@jbrowse/plugin-linear-genome-view 3.6.5 → 4.0.0

package/dist/LinearGenomeView/components/TracksContainer.js

@@ -1,84 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const Gridlines_1 = __importDefault(require("./Gridlines"));
-const Rubberband_1 = __importDefault(require("./Rubberband"));
-const Scalebar_1 = __importDefault(require("./Scalebar"));
-const VerticalGuide_1 = __importDefault(require("./VerticalGuide"));
-const consts_1 = require("../consts");
-const useRangeSelect_1 = require("./useRangeSelect");
-const useSideScroll_1 = require("./useSideScroll");
-const useWheelScroll_1 = require("./useWheelScroll");
-const CenterLine = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./CenterLine'))));
-const Highlight = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./Highlight'))));
-const RubberbandSpan = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./RubberbandSpan'))));
-const useStyles = (0, mui_1.makeStyles)()({
-    tracksContainer: {
-        position: 'relative',
-    },
-});
-const TracksContainer = (0, mobx_react_1.observer)(function TracksContainer({ children, model, }) {
-    const { classes } = useStyles();
-    const { pluginManager } = (0, util_1.getEnv)(model);
-    const { mouseDown: mouseDown1, mouseUp } = (0, useSideScroll_1.useSideScroll)(model);
-    const { stickyViewHeaders, rubberbandTop, showGridlines, showCenterLine } = model;
-    const ref = (0, react_1.useRef)(null);
-    const { guideX, rubberbandOn, leftBpOffset, rightBpOffset, numOfBpSelected, width, left, anchorPosition, open, handleMenuItemClick, handleClose, mouseMove, mouseDown: mouseDown2, } = (0, useRangeSelect_1.useRangeSelect)(ref, model, true);
-    (0, useWheelScroll_1.useWheelScroll)(ref, model);
-    const additional = pluginManager.evaluateExtensionPoint('LinearGenomeView-TracksContainerComponent', undefined, { model });
-    return ((0, jsx_runtime_1.jsxs)("div", { ref: ref, "data-testid": "tracksContainer", className: classes.tracksContainer, onMouseDown: event => {
-            mouseDown1(event);
-            mouseDown2(event);
-        }, onMouseMove: mouseMove, onMouseUp: mouseUp, children: [showGridlines ? (0, jsx_runtime_1.jsx)(Gridlines_1.default, { model: model }) : null, (0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: null, children: showCenterLine ? (0, jsx_runtime_1.jsx)(CenterLine, { model: model }) : null }), guideX !== undefined ? ((0, jsx_runtime_1.jsx)(VerticalGuide_1.default, { model: model, coordX: guideX })) : rubberbandOn ? ((0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: null, children: (0, jsx_runtime_1.jsx)(RubberbandSpan, { leftBpOffset: leftBpOffset, rightBpOffset: rightBpOffset, numOfBpSelected: numOfBpSelected, width: width, left: left, top: rubberbandTop, sticky: stickyViewHeaders }) })) : null, anchorPosition ? ((0, jsx_runtime_1.jsx)(ui_1.Menu, { anchorReference: "anchorPosition", anchorPosition: {
-                    left: anchorPosition.clientX,
-                    top: anchorPosition.clientY,
-                }, onMenuItemClick: handleMenuItemClick, open: open, onClose: handleClose, menuItems: model.rubberBandMenuItems() })) : null, (0, jsx_runtime_1.jsx)(Rubberband_1.default, { model: model, ControlComponent: (0, jsx_runtime_1.jsx)(Scalebar_1.default, { model: model, style: {
-                        height: consts_1.SCALE_BAR_HEIGHT,
-                        boxSizing: 'border-box',
-                    } }) }), (0, jsx_runtime_1.jsx)(HighlightGroup, { model: model }), additional, children] }));
-});
-const HighlightGroup = (0, mobx_react_1.observer)(function HighlightGroup({ model, }) {
-    return model.highlight.length ? ((0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: null, children: model.highlight.map((highlight, idx) => ((0, jsx_runtime_1.jsx)(Highlight, { model: model, highlight: highlight }, `${JSON.stringify(highlight)}-${idx}`))) })) : null;
-});
-exports.default = TracksContainer;

package/dist/LinearGenomeView/components/VerticalGuide.d.ts

@@ -1,7 +0,0 @@
-import type { LinearGenomeViewModel } from '..';
-type LGV = LinearGenomeViewModel;
-declare const VerticalGuide: ({ model, coordX, }: {
-    model: LGV;
-    coordX: number;
-}) => import("react/jsx-runtime").JSX.Element;
-export default VerticalGuide;

package/dist/LinearGenomeView/components/VerticalGuide.js

@@ -1,31 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const util_1 = require("@jbrowse/core/util");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const useStyles = (0, mui_1.makeStyles)()({
-    guide: {
-        pointerEvents: 'none',
-        height: '100%',
-        width: 1,
-        position: 'absolute',
-        background: 'red',
-        zIndex: 1001,
-    },
-    tooltipTarget: {
-        position: 'sticky',
-        width: 1,
-    },
-});
-const VerticalGuide = (0, mobx_react_1.observer)(function VerticalGuide({ model, coordX, }) {
-    const { classes } = useStyles();
-    const { stickyViewHeaders, rubberbandTop } = model;
-    return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.Tooltip, { open: true, placement: "top", title: (0, util_1.stringify)(model.pxToBp(coordX)), arrow: true, children: (0, jsx_runtime_1.jsx)("div", { className: classes.tooltipTarget, style: {
-                        left: coordX + 6,
-                        top: rubberbandTop,
-                        position: stickyViewHeaders ? 'sticky' : undefined,
-                    } }) }), (0, jsx_runtime_1.jsx)("div", { className: classes.guide, style: { left: coordX } })] }));
-});
-exports.default = VerticalGuide;

package/dist/LinearGenomeView/components/fetchSequence.d.ts

@@ -1,4 +0,0 @@
-import type { LinearGenomeViewModel } from '../model';
-import type { Feature } from '@jbrowse/core/util';
-import type { Region } from '@jbrowse/core/util/types';
-export declare function fetchSequence(model: LinearGenomeViewModel, regions: Region[]): Promise<Feature[]>;

package/dist/LinearGenomeView/components/fetchSequence.js

@@ -1,29 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.fetchSequence = fetchSequence;
-const configuration_1 = require("@jbrowse/core/configuration");
-const util_1 = require("@jbrowse/core/util");
-async function fetchSequence(model, regions) {
-    const session = (0, util_1.getSession)(model);
-    const { leftOffset, rightOffset } = model;
-    if (!leftOffset || !rightOffset) {
-        throw new Error('no offsets on model to use for range');
-    }
-    const assemblyNames = new Set(regions.map(r => r.assemblyName));
-    if (assemblyNames.size > 1) {
-        throw new Error('not able to fetch sequences from multiple assemblies currently');
-    }
-    const { rpcManager, assemblyManager } = session;
-    const assemblyName = leftOffset.assemblyName || rightOffset.assemblyName || '';
-    const assembly = assemblyManager.get(assemblyName);
-    if (!assembly) {
-        throw new Error(`assembly ${assemblyName} not found`);
-    }
-    const adapterConfig = (0, configuration_1.getConf)(assembly, ['sequence', 'adapter']);
-    const sessionId = 'getSequence';
-    return rpcManager.call(sessionId, 'CoreGetFeatures', {
-        adapterConfig,
-        regions,
-        sessionId,
-    });
-}

package/dist/LinearGenomeView/components/useRangeSelect.d.ts

@@ -1,59 +0,0 @@
-import type React from 'react';
-import type { LinearGenomeViewModel } from '..';
-interface AnchorPosition {
-    offsetX: number;
-    clientX: number;
-    clientY: number;
-}
-export declare function useRangeSelect(ref: React.RefObject<HTMLDivElement | null>, model: LinearGenomeViewModel, shiftOnly?: boolean): {
-    open: boolean;
-    guideX: number | undefined;
-    mouseDown: (event: React.MouseEvent<HTMLDivElement>) => void;
-    mouseMove: (event: React.MouseEvent<HTMLDivElement>) => void;
-    mouseOut: () => void;
-    handleMenuItemClick: (_: unknown, callback: () => void) => void;
-    rubberbandOn?: undefined;
-    handleClose?: undefined;
-    leftBpOffset?: undefined;
-    rightBpOffset?: undefined;
-    anchorPosition?: undefined;
-    numOfBpSelected?: undefined;
-    width?: undefined;
-    left?: undefined;
-} | {
-    open: boolean;
-    rubberbandOn: boolean;
-    mouseDown: (event: React.MouseEvent<HTMLDivElement>) => void;
-    mouseMove: (event: React.MouseEvent<HTMLDivElement>) => void;
-    mouseOut: () => void;
-    handleClose: () => void;
-    handleMenuItemClick: (_: unknown, callback: () => void) => void;
-    leftBpOffset: {
-        coord: number;
-        index: number;
-        refName: string;
-        oob: boolean;
-        assemblyName: string;
-        offset: number;
-        start: number;
-        end: number;
-        reversed?: boolean;
-    };
-    rightBpOffset: {
-        coord: number;
-        index: number;
-        refName: string;
-        oob: boolean;
-        assemblyName: string;
-        offset: number;
-        start: number;
-        end: number;
-        reversed?: boolean;
-    };
-    anchorPosition: AnchorPosition | undefined;
-    numOfBpSelected: number;
-    width: number;
-    left: number;
-    guideX?: undefined;
-};
-export {};

package/dist/LinearGenomeView/components/useRangeSelect.js

@@ -1,131 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.useRangeSelect = useRangeSelect;
-const react_1 = require("react");
-const util_1 = require("./util");
-function useRangeSelect(ref, model, shiftOnly) {
-    const [startX, setStartX] = (0, react_1.useState)();
-    const [currentX, setCurrentX] = (0, react_1.useState)();
-    const [anchorPosition, setAnchorPosition] = (0, react_1.useState)();
-    const [guideX, setGuideX] = (0, react_1.useState)();
-    const mouseDragging = startX !== undefined && anchorPosition === undefined;
-    (0, react_1.useEffect)(() => {
-        function computeOffsets(offsetX) {
-            if (startX === undefined) {
-                return;
-            }
-            const leftPx = Math.min(startX, offsetX);
-            const rightPx = Math.max(startX, offsetX);
-            return {
-                leftOffset: model.pxToBp(leftPx),
-                rightOffset: model.pxToBp(rightPx),
-            };
-        }
-        function globalMouseMove(event) {
-            if (ref.current && mouseDragging) {
-                const relativeX = (0, util_1.getRelativeX)(event, ref.current);
-                setCurrentX(relativeX);
-            }
-        }
-        function globalMouseUp(event) {
-            if (startX !== undefined && ref.current) {
-                const { clientX, clientY } = event;
-                const offsetX = (0, util_1.getRelativeX)(event, ref.current);
-                setAnchorPosition({
-                    offsetX,
-                    clientX,
-                    clientY,
-                });
-                const args = computeOffsets(offsetX);
-                if (args) {
-                    model.setOffsets(args.leftOffset, args.rightOffset);
-                }
-                setGuideX(undefined);
-            }
-        }
-        if (mouseDragging) {
-            window.addEventListener('mousemove', globalMouseMove);
-            window.addEventListener('mouseup', globalMouseUp);
-            return () => {
-                window.removeEventListener('mousemove', globalMouseMove);
-                window.removeEventListener('mouseup', globalMouseUp);
-            };
-        }
-        return () => { };
-    }, [startX, mouseDragging, model, ref]);
-    (0, react_1.useEffect)(() => {
-        if (!mouseDragging &&
-            currentX !== undefined &&
-            startX !== undefined &&
-            Math.abs(currentX - startX) <= 3) {
-            handleClose();
-        }
-    }, [mouseDragging, currentX, startX]);
-    function mouseDown(event) {
-        if (shiftOnly && !event.shiftKey) {
-            return;
-        }
-        event.preventDefault();
-        event.stopPropagation();
-        const relativeX = (0, util_1.getRelativeX)(event, ref.current);
-        setStartX(relativeX);
-        setCurrentX(relativeX);
-    }
-    function mouseMove(event) {
-        if (shiftOnly) {
-            if (event.shiftKey) {
-                setGuideX((0, util_1.getRelativeX)(event, ref.current));
-            }
-            else {
-                setGuideX(undefined);
-            }
-        }
-        else {
-            setGuideX((0, util_1.getRelativeX)(event, ref.current));
-        }
-    }
-    function mouseOut() {
-        setGuideX(undefined);
-    }
-    function handleClose() {
-        setAnchorPosition(undefined);
-        setStartX(undefined);
-        setCurrentX(undefined);
-    }
-    function handleMenuItemClick(_, callback) {
-        callback();
-        handleClose();
-    }
-    const open = Boolean(anchorPosition);
-    if (startX === undefined) {
-        return {
-            open,
-            guideX,
-            mouseDown,
-            mouseMove,
-            mouseOut,
-            handleMenuItemClick,
-        };
-    }
-    const right = anchorPosition ? anchorPosition.offsetX : currentX || 0;
-    const left = Math.min(right, startX);
-    const width = Math.abs(right - startX);
-    const leftBpOffset = model.pxToBp(left);
-    const rightBpOffset = model.pxToBp(left + width);
-    const numOfBpSelected = Math.ceil(width * model.bpPerPx);
-    return {
-        open,
-        rubberbandOn: true,
-        mouseDown,
-        mouseMove,
-        mouseOut,
-        handleClose,
-        handleMenuItemClick,
-        leftBpOffset,
-        rightBpOffset,
-        anchorPosition,
-        numOfBpSelected,
-        width,
-        left,
-    };
-}

package/dist/LinearGenomeView/components/useSideScroll.d.ts

@@ -1,6 +0,0 @@
-import type React from 'react';
-import type { LinearGenomeViewModel } from '..';
-export declare function useSideScroll(model: LinearGenomeViewModel): {
-    mouseDown: (event: React.MouseEvent) => void;
-    mouseUp: (event: React.MouseEvent) => void;
-};

package/dist/LinearGenomeView/components/useSideScroll.js

@@ -1,60 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.useSideScroll = useSideScroll;
-const react_1 = require("react");
-function useSideScroll(model) {
-    const [mouseDragging, setMouseDragging] = (0, react_1.useState)(false);
-    const scheduled = (0, react_1.useRef)(false);
-    const prevX = (0, react_1.useRef)(0);
-    (0, react_1.useEffect)(() => {
-        let cleanup = () => { };
-        function globalMouseMove(event) {
-            event.preventDefault();
-            const currX = event.clientX;
-            const distance = currX - prevX.current;
-            if (distance) {
-                if (!scheduled.current) {
-                    scheduled.current = true;
-                    window.requestAnimationFrame(() => {
-                        model.horizontalScroll(-distance);
-                        scheduled.current = false;
-                        prevX.current = event.clientX;
-                    });
-                }
-            }
-        }
-        function globalMouseUp() {
-            prevX.current = 0;
-            if (mouseDragging) {
-                setMouseDragging(false);
-            }
-        }
-        if (mouseDragging) {
-            window.addEventListener('mousemove', globalMouseMove, true);
-            window.addEventListener('mouseup', globalMouseUp, true);
-            cleanup = () => {
-                window.removeEventListener('mousemove', globalMouseMove, true);
-                window.removeEventListener('mouseup', globalMouseUp, true);
-            };
-        }
-        return cleanup;
-    }, [model, mouseDragging]);
-    function mouseDown(event) {
-        if (event.shiftKey) {
-            return;
-        }
-        const target = event.target;
-        if (target.draggable || target.dataset.resizer) {
-            return;
-        }
-        if (event.button === 0) {
-            prevX.current = event.clientX;
-            setMouseDragging(true);
-        }
-    }
-    function mouseUp(event) {
-        event.preventDefault();
-        setMouseDragging(false);
-    }
-    return { mouseDown, mouseUp };
-}

package/dist/LinearGenomeView/components/useWheelScroll.d.ts

@@ -1,7 +0,0 @@
-import type React from 'react';
-export declare function useWheelScroll(ref: React.RefObject<HTMLDivElement | null>, model: {
-    bpPerPx: number;
-    zoomTo: (arg: number, arg2?: number) => void;
-    setScaleFactor: (arg: number) => void;
-    horizontalScroll: (arg: number) => void;
-}): void;

package/dist/LinearGenomeView/components/useWheelScroll.js

@@ -1,62 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.useWheelScroll = useWheelScroll;
-const react_1 = require("react");
-const util_1 = require("@jbrowse/core/util");
-function useWheelScroll(ref, model) {
-    const delta = (0, react_1.useRef)(0);
-    const timeout = (0, react_1.useRef)(null);
-    const scheduled = (0, react_1.useRef)(false);
-    (0, react_1.useEffect)(() => {
-        let samples = [];
-        const curr = ref.current;
-        function onWheel(event) {
-            if (event.ctrlKey) {
-                event.preventDefault();
-                samples.push(event.deltaY);
-                const averageDeltaY = Math.abs((0, util_1.sum)(samples)) / samples.length;
-                const normalizer = averageDeltaY < 6
-                    ? 25
-                    : averageDeltaY > 30
-                        ? averageDeltaY > 150
-                            ? 500
-                            : 150
-                        : 75;
-                delta.current += event.deltaY / normalizer;
-                model.setScaleFactor(delta.current < 0 ? 1 - delta.current : 1 / (1 + delta.current));
-                if (timeout.current) {
-                    clearTimeout(timeout.current);
-                }
-                timeout.current = setTimeout(() => {
-                    model.setScaleFactor(1);
-                    model.zoomTo(delta.current > 0
-                        ? model.bpPerPx * (1 + delta.current)
-                        : model.bpPerPx / (1 - delta.current), event.clientX - ((curr === null || curr === void 0 ? void 0 : curr.getBoundingClientRect().left) || 0));
-                    delta.current = 0;
-                    samples = [];
-                }, 300);
-            }
-            else {
-                if (Math.abs(event.deltaX) > Math.abs(2 * event.deltaY)) {
-                    event.preventDefault();
-                }
-                delta.current += event.deltaX;
-                if (!scheduled.current) {
-                    scheduled.current = true;
-                    window.requestAnimationFrame(() => {
-                        model.horizontalScroll(delta.current);
-                        delta.current = 0;
-                        scheduled.current = false;
-                    });
-                }
-            }
-        }
-        if (curr) {
-            curr.addEventListener('wheel', onWheel);
-            return () => {
-                curr.removeEventListener('wheel', onWheel);
-            };
-        }
-        return () => { };
-    }, [model, ref]);
-}

package/dist/LinearGenomeView/components/util.d.ts

@@ -1,25 +0,0 @@
-import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
-import type { SearchScope } from '@jbrowse/core/TextSearch/TextSearchManager';
-import type { Assembly } from '@jbrowse/core/assemblyManager/assembly';
-import type { SearchType } from '@jbrowse/core/data_adapters/BaseAdapter';
-import type { TextSearchManager } from '@jbrowse/core/util';
-export declare function fetchResults({ queryString, searchType, searchScope, rankSearchResults, textSearchManager, assembly, }: {
-    queryString: string;
-    searchScope: SearchScope;
-    rankSearchResults: (results: BaseResult[]) => BaseResult[];
-    searchType?: SearchType;
-    textSearchManager?: TextSearchManager;
-    assembly?: Assembly;
-}): Promise<BaseResult[]>;
-export declare function splitLast(str: string, split: string): [string, string];
-export declare function getRelativeX(event: {
-    clientX: number;
-    target: EventTarget | null;
-}, element: HTMLElement | null): number;
-export declare function getCytobands(assembly: Assembly | undefined, refName: string): {
-    refName: string;
-    start: number;
-    end: number;
-    type: string;
-    name: any;
-}[];

package/dist/LinearGenomeView/components/util.js

@@ -1,49 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.fetchResults = fetchResults;
-exports.splitLast = splitLast;
-exports.getRelativeX = getRelativeX;
-exports.getCytobands = getCytobands;
-const BaseResults_1 = __importDefault(require("@jbrowse/core/TextSearch/BaseResults"));
-const util_1 = require("@jbrowse/core/util");
-async function fetchResults({ queryString, searchType, searchScope, rankSearchResults, textSearchManager, assembly, }) {
-    var _a;
-    if (!textSearchManager) {
-        console.warn('No text search manager');
-    }
-    const textSearchResults = (await (textSearchManager === null || textSearchManager === void 0 ? void 0 : textSearchManager.search({
-        queryString,
-        searchType,
-    }, searchScope, rankSearchResults))) || [];
-    const refNameResults = ((_a = assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) === null || _a === void 0 ? void 0 : _a.filter(ref => ref.toLowerCase().startsWith(queryString.toLowerCase())).slice(0, 10).map(r => new BaseResults_1.default({
-        label: r,
-    }))) || [];
-    return (0, util_1.dedupe)([...refNameResults, ...textSearchResults], elt => elt.getId());
-}
-function splitLast(str, split) {
-    const lastIndex = str.lastIndexOf(split);
-    if (lastIndex === -1) {
-        return [str, ''];
-    }
-    else {
-        const before = str.slice(0, lastIndex);
-        const after = str.slice(lastIndex + 1);
-        return [before, after];
-    }
-}
-function getRelativeX(event, element) {
-    return event.clientX - ((element === null || element === void 0 ? void 0 : element.getBoundingClientRect().left) || 0);
-}
-function getCytobands(assembly, refName) {
-    var _a;
-    return (((_a = assembly === null || assembly === void 0 ? void 0 : assembly.cytobands) === null || _a === void 0 ? void 0 : _a.map(f => ({
-        refName: assembly.getCanonicalRefName(f.get('refName')) || f.get('refName'),
-        start: f.get('start'),
-        end: f.get('end'),
-        type: f.get('gieStain'),
-        name: f.get('name'),
-    })).filter(f => f.refName === refName)) || []);
-}

package/dist/LinearGenomeView/consts.d.ts

@@ -1,7 +0,0 @@
-export declare const HEADER_BAR_HEIGHT = 48;
-export declare const HEADER_OVERVIEW_HEIGHT = 20;
-export declare const SCALE_BAR_HEIGHT = 17;
-export declare const RESIZE_HANDLE_HEIGHT = 3;
-export declare const INTER_REGION_PADDING_WIDTH = 2;
-export declare const SPACING = 7;
-export declare const WIDGET_HEIGHT = 32;

package/dist/LinearGenomeView/consts.js

@@ -1,10 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.WIDGET_HEIGHT = exports.SPACING = exports.INTER_REGION_PADDING_WIDTH = exports.RESIZE_HANDLE_HEIGHT = exports.SCALE_BAR_HEIGHT = exports.HEADER_OVERVIEW_HEIGHT = exports.HEADER_BAR_HEIGHT = void 0;
-exports.HEADER_BAR_HEIGHT = 48;
-exports.HEADER_OVERVIEW_HEIGHT = 20;
-exports.SCALE_BAR_HEIGHT = 17;
-exports.RESIZE_HANDLE_HEIGHT = 3;
-exports.INTER_REGION_PADDING_WIDTH = 2;
-exports.SPACING = 7;
-exports.WIDGET_HEIGHT = 32;

package/dist/LinearGenomeView/index.d.ts

@@ -1,3 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function LinearGenomeViewF(pluginManager: PluginManager): void;
-export * from './model';

package/dist/LinearGenomeView/index.js

@@ -1,53 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __exportStar = (this && this.__exportStar) || function(m, exports) {
-    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = LinearGenomeViewF;
-const react_1 = require("react");
-const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
-const model_1 = require("./model");
-function LinearGenomeViewF(pluginManager) {
-    pluginManager.addViewType(() => {
-        return new pluggableElementTypes_1.ViewType({
-            name: 'LinearGenomeView',
-            displayName: 'Linear genome view',
-            stateModel: (0, model_1.stateModelFactory)(pluginManager),
-            ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/LinearGenomeView')))),
-        });
-    });
-}
-__exportStar(require("./model"), exports);