@jbrowse/plugin-linear-genome-view 3.6.5 → 4.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/BaseLinearDisplay/SVGLegend.d.ts +6 -0
- package/esm/BaseLinearDisplay/SVGLegend.js +17 -0
- package/esm/BaseLinearDisplay/calculateSvgLegendWidth.d.ts +2 -0
- package/esm/BaseLinearDisplay/calculateSvgLegendWidth.js +11 -0
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +3 -3
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js +13 -24
- package/esm/BaseLinearDisplay/components/Block.js +2 -2
- package/esm/BaseLinearDisplay/components/BlockErrorMessage.js +2 -2
- package/esm/BaseLinearDisplay/components/BlockMsg.js +11 -2
- package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/CollapseIntronsDialog.d.ts +9 -0
- package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/CollapseIntronsDialog.js +42 -0
- package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/TranscriptTable.d.ts +11 -0
- package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/TranscriptTable.js +40 -0
- package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/util.d.ts +19 -0
- package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/util.js +45 -0
- package/esm/BaseLinearDisplay/components/FloatingLabels.d.ts +5 -0
- package/esm/BaseLinearDisplay/components/FloatingLabels.js +89 -0
- package/esm/BaseLinearDisplay/components/FloatingLegend.d.ts +8 -0
- package/esm/BaseLinearDisplay/components/FloatingLegend.js +43 -0
- package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +1 -5
- package/esm/BaseLinearDisplay/components/LinearBlocks.js +5 -42
- package/esm/BaseLinearDisplay/components/LoadingOverlay.d.ts +4 -0
- package/esm/BaseLinearDisplay/components/LoadingOverlay.js +49 -0
- package/esm/BaseLinearDisplay/components/MaxHeightReachedIndicator.d.ts +4 -0
- package/esm/BaseLinearDisplay/components/MaxHeightReachedIndicator.js +26 -0
- package/esm/BaseLinearDisplay/components/MenuPage.d.ts +8 -0
- package/esm/BaseLinearDisplay/components/MenuPage.js +24 -0
- package/esm/BaseLinearDisplay/components/NonBlockCanvasDisplayComponent.d.ts +19 -0
- package/esm/BaseLinearDisplay/components/NonBlockCanvasDisplayComponent.js +48 -0
- package/esm/BaseLinearDisplay/components/RenderedBlocks.d.ts +12 -0
- package/esm/BaseLinearDisplay/components/RenderedBlocks.js +22 -0
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +5 -8
- package/esm/BaseLinearDisplay/components/TooLargeMessage.js +3 -3
- package/esm/BaseLinearDisplay/components/Tooltip.d.ts +2 -0
- package/esm/BaseLinearDisplay/components/Tooltip.js +10 -7
- package/esm/BaseLinearDisplay/components/types.d.ts +1 -0
- package/esm/BaseLinearDisplay/components/types.js +1 -0
- package/esm/BaseLinearDisplay/components/util.d.ts +21 -0
- package/esm/BaseLinearDisplay/components/util.js +116 -0
- package/esm/BaseLinearDisplay/index.d.ts +17 -8
- package/esm/BaseLinearDisplay/index.js +13 -6
- package/esm/BaseLinearDisplay/model.d.ts +1177 -0
- package/esm/BaseLinearDisplay/model.js +424 -0
- package/esm/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +5 -5
- package/esm/BaseLinearDisplay/models/FeatureDensityMixin.js +11 -14
- package/esm/BaseLinearDisplay/models/NonBlockCanvasDisplayMixin.d.ts +21 -0
- package/esm/BaseLinearDisplay/models/NonBlockCanvasDisplayMixin.js +46 -0
- package/esm/BaseLinearDisplay/models/TrackHeightMixin.d.ts +3 -3
- package/esm/BaseLinearDisplay/models/TrackHeightMixin.js +2 -3
- package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +1 -1
- package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.js +2 -3
- package/esm/BaseLinearDisplay/models/calculateLabelPositions.d.ts +24 -0
- package/esm/BaseLinearDisplay/models/calculateLabelPositions.js +60 -0
- package/esm/BaseLinearDisplay/models/configSchema.d.ts +2 -2
- package/esm/BaseLinearDisplay/models/configSchema.js +3 -3
- package/esm/BaseLinearDisplay/models/renderSvg.d.ts +3 -7
- package/esm/BaseLinearDisplay/models/renderSvg.js +22 -11
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +37 -19
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +151 -135
- package/esm/BaseLinearDisplay/models/util.d.ts +4 -4
- package/esm/BaseLinearDisplay/models/util.js +16 -13
- package/esm/BaseLinearDisplay/renderSvg.d.ts +3 -0
- package/esm/BaseLinearDisplay/renderSvg.js +59 -0
- package/esm/BaseLinearDisplay/types.d.ts +47 -0
- package/esm/BaseLinearDisplay/types.js +3 -0
- package/esm/BaseLinearDisplay/util.d.ts +15 -0
- package/esm/BaseLinearDisplay/util.js +61 -0
- package/esm/BasicTrack/configSchema.d.ts +16 -11
- package/esm/BasicTrack/index.js +1 -1
- package/esm/FeatureTrack/configSchema.d.ts +16 -11
- package/esm/FeatureTrack/index.js +1 -1
- package/esm/LaunchLinearGenomeView/index.js +12 -62
- package/esm/LinearBareDisplay/configSchema.d.ts +4 -4
- package/esm/LinearBareDisplay/configSchema.js +1 -1
- package/esm/LinearBareDisplay/index.d.ts +2 -2
- package/esm/LinearBareDisplay/index.js +5 -5
- package/esm/LinearBareDisplay/model.d.ts +959 -92
- package/esm/LinearBareDisplay/model.js +3 -6
- package/esm/LinearBasicDisplay/components/LinearBasicDisplayComponent.d.ts +5 -0
- package/esm/LinearBasicDisplay/components/LinearBasicDisplayComponent.js +9 -0
- package/esm/LinearBasicDisplay/configSchema.d.ts +4 -4
- package/esm/LinearBasicDisplay/configSchema.js +1 -1
- package/esm/LinearBasicDisplay/index.d.ts +2 -2
- package/esm/LinearBasicDisplay/index.js +6 -6
- package/esm/LinearBasicDisplay/model.d.ts +1134 -122
- package/esm/LinearBasicDisplay/model.js +116 -116
- package/esm/{LinearBasicDisplay → LinearFeatureDisplay}/components/AddFiltersDialog.js +2 -2
- package/esm/{LinearBasicDisplay → LinearFeatureDisplay}/components/SetMaxHeightDialog.js +3 -3
- package/{dist/LinearBasicDisplay → esm/LinearFeatureDisplay}/configSchema.d.ts +4 -4
- package/esm/LinearFeatureDisplay/configSchema.js +11 -0
- package/esm/LinearFeatureDisplay/index.d.ts +3 -0
- package/esm/LinearFeatureDisplay/index.js +2 -0
- package/esm/LinearFeatureDisplay/model.d.ts +1415 -0
- package/esm/LinearFeatureDisplay/model.js +265 -0
- package/esm/LinearGenomeView/SVGErrorBox.d.ts +5 -0
- package/esm/LinearGenomeView/SVGErrorBox.js +4 -0
- package/esm/LinearGenomeView/afterAttach.d.ts +5 -0
- package/esm/LinearGenomeView/afterAttach.js +95 -0
- package/esm/LinearGenomeView/components/CenterLine.js +6 -4
- package/esm/LinearGenomeView/components/Cytobands.js +4 -4
- package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +1 -1
- package/esm/LinearGenomeView/components/ExportSvgDialog.js +5 -1
- package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +8 -2
- package/esm/LinearGenomeView/components/GetSequenceDialog.js +13 -16
- package/esm/LinearGenomeView/components/Gridlines.js +18 -15
- package/esm/LinearGenomeView/components/Header.js +9 -9
- package/esm/LinearGenomeView/components/HeaderPanControls.js +2 -2
- package/esm/LinearGenomeView/components/HeaderRegionWidth.js +4 -5
- package/esm/LinearGenomeView/components/HeaderTrackSelectorButton.js +2 -2
- package/esm/LinearGenomeView/components/HeaderZoomControls.js +3 -3
- package/esm/LinearGenomeView/components/Highlight.d.ts +1 -1
- package/esm/LinearGenomeView/components/Highlight.js +6 -6
- package/esm/LinearGenomeView/components/ImportForm.d.ts +1 -1
- package/esm/LinearGenomeView/components/ImportForm.js +14 -12
- package/esm/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +3 -3
- package/esm/LinearGenomeView/components/LinearGenomeView.js +7 -7
- package/esm/LinearGenomeView/components/LinearGenomeViewContainer.js +7 -8
- package/esm/LinearGenomeView/components/MiniControls.js +6 -6
- package/esm/LinearGenomeView/components/NoTracksActiveButton.js +2 -2
- package/esm/LinearGenomeView/components/OverviewHighlight.d.ts +1 -1
- package/esm/LinearGenomeView/components/OverviewHighlight.js +5 -5
- package/esm/LinearGenomeView/components/OverviewRubberband.js +4 -4
- package/esm/LinearGenomeView/components/OverviewRubberbandHoverTooltip.js +9 -5
- package/esm/LinearGenomeView/components/OverviewScalebar.js +36 -28
- package/esm/LinearGenomeView/components/OverviewScalebarPolygon.js +5 -5
- package/esm/LinearGenomeView/components/OverviewScalebarTickLabels.js +7 -7
- package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +1 -1
- package/esm/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +1 -1
- package/esm/LinearGenomeView/components/RefNameAutocomplete/index.js +10 -10
- package/esm/LinearGenomeView/components/RegionWidthEditorDialog.d.ts +1 -1
- package/esm/LinearGenomeView/components/RegionWidthEditorDialog.js +6 -4
- package/esm/LinearGenomeView/components/Rubberband.js +9 -7
- package/esm/LinearGenomeView/components/RubberbandSpan.js +4 -5
- package/esm/LinearGenomeView/components/Scalebar.js +8 -10
- package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.d.ts +1 -1
- package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.js +50 -17
- package/esm/LinearGenomeView/components/ScalebarRefNameLabels.d.ts +1 -1
- package/esm/LinearGenomeView/components/ScalebarRefNameLabels.js +13 -11
- package/esm/LinearGenomeView/components/SearchBox.d.ts +1 -1
- package/esm/LinearGenomeView/components/SearchBox.js +8 -9
- package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts +1 -1
- package/esm/LinearGenomeView/components/SearchResultsDialog.js +2 -2
- package/esm/LinearGenomeView/components/SearchResultsTable.d.ts +1 -1
- package/esm/LinearGenomeView/components/SearchResultsTable.js +4 -6
- package/esm/LinearGenomeView/components/SequenceSearchDialog.js +6 -6
- package/esm/LinearGenomeView/components/TrackContainer.js +32 -20
- package/esm/LinearGenomeView/components/TrackLabel.js +10 -11
- package/esm/LinearGenomeView/components/TrackLabelContainer.js +7 -8
- package/esm/LinearGenomeView/components/TrackLabelDragHandle.js +1 -1
- package/esm/LinearGenomeView/components/TrackLabelMenu.js +80 -68
- package/esm/LinearGenomeView/components/TrackRenderingContainer.d.ts +1 -2
- package/esm/LinearGenomeView/components/TrackRenderingContainer.js +5 -5
- package/esm/LinearGenomeView/components/TracksContainer.js +18 -15
- package/esm/LinearGenomeView/components/VerticalGuide.js +5 -3
- package/esm/LinearGenomeView/components/fetchSequence.d.ts +7 -2
- package/esm/LinearGenomeView/components/useRangeSelect.d.ts +27 -2
- package/esm/LinearGenomeView/components/useRangeSelect.js +26 -20
- package/esm/LinearGenomeView/components/useWheelScroll.js +22 -12
- package/esm/LinearGenomeView/components/util.d.ts +2 -13
- package/esm/LinearGenomeView/components/util.js +12 -31
- package/esm/LinearGenomeView/index.d.ts +1 -1
- package/esm/LinearGenomeView/index.js +3 -3
- package/esm/LinearGenomeView/keyboardHandler.d.ts +2 -0
- package/esm/LinearGenomeView/keyboardHandler.js +29 -0
- package/esm/LinearGenomeView/menuItems.d.ts +7 -0
- package/esm/LinearGenomeView/menuItems.js +299 -0
- package/esm/LinearGenomeView/model.d.ts +92 -89
- package/esm/LinearGenomeView/model.js +166 -414
- package/esm/LinearGenomeView/svgExportUtil.d.ts +9 -0
- package/esm/LinearGenomeView/svgExportUtil.js +6 -0
- package/{dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts → esm/LinearGenomeView/svgcomponents/SVGGridlines.d.ts} +2 -2
- package/esm/LinearGenomeView/svgcomponents/SVGGridlines.js +20 -0
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +5 -5
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +4 -3
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +24 -12
- package/esm/LinearGenomeView/svgcomponents/SVGRuler.js +13 -5
- package/esm/LinearGenomeView/svgcomponents/SVGTracks.js +2 -2
- package/esm/LinearGenomeView/types.d.ts +5 -1
- package/esm/LinearGenomeView/util.d.ts +2 -2
- package/esm/LinearGenomeView/util.js +8 -6
- package/esm/index.d.ts +975 -94
- package/esm/index.js +37 -38
- package/esm/searchUtils.d.ts +1 -1
- package/esm/searchUtils.js +6 -4
- package/package.json +28 -33
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +0 -8
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +0 -72
- package/dist/BaseLinearDisplay/components/Block.d.ts +0 -14
- package/dist/BaseLinearDisplay/components/Block.js +0 -50
- package/dist/BaseLinearDisplay/components/BlockErrorMessage.d.ts +0 -7
- package/dist/BaseLinearDisplay/components/BlockErrorMessage.js +0 -27
- package/dist/BaseLinearDisplay/components/BlockLoadingMessage.d.ts +0 -6
- package/dist/BaseLinearDisplay/components/BlockLoadingMessage.js +0 -26
- package/dist/BaseLinearDisplay/components/BlockMsg.d.ts +0 -6
- package/dist/BaseLinearDisplay/components/BlockMsg.js +0 -20
- package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +0 -9
- package/dist/BaseLinearDisplay/components/LinearBlocks.js +0 -61
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +0 -11
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +0 -59
- package/dist/BaseLinearDisplay/components/TooLargeMessage.d.ts +0 -10
- package/dist/BaseLinearDisplay/components/TooLargeMessage.js +0 -25
- package/dist/BaseLinearDisplay/components/Tooltip.d.ts +0 -11
- package/dist/BaseLinearDisplay/components/Tooltip.js +0 -24
- package/dist/BaseLinearDisplay/index.d.ts +0 -8
- package/dist/BaseLinearDisplay/index.js +0 -20
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +0 -311
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +0 -325
- package/dist/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +0 -32
- package/dist/BaseLinearDisplay/models/FeatureDensityMixin.js +0 -122
- package/dist/BaseLinearDisplay/models/TrackHeightMixin.d.ts +0 -11
- package/dist/BaseLinearDisplay/models/TrackHeightMixin.js +0 -35
- package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +0 -2
- package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.js +0 -33
- package/dist/BaseLinearDisplay/models/configSchema.d.ts +0 -29
- package/dist/BaseLinearDisplay/models/configSchema.js +0 -35
- package/dist/BaseLinearDisplay/models/renderSvg.d.ts +0 -7
- package/dist/BaseLinearDisplay/models/renderSvg.js +0 -80
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +0 -78
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +0 -229
- package/dist/BaseLinearDisplay/models/util.d.ts +0 -22
- package/dist/BaseLinearDisplay/models/util.js +0 -45
- package/dist/BasicTrack/configSchema.d.ts +0 -80
- package/dist/BasicTrack/configSchema.js +0 -10
- package/dist/BasicTrack/index.d.ts +0 -2
- package/dist/BasicTrack/index.js +0 -18
- package/dist/FeatureTrack/configSchema.d.ts +0 -80
- package/dist/FeatureTrack/configSchema.js +0 -10
- package/dist/FeatureTrack/index.d.ts +0 -2
- package/dist/FeatureTrack/index.js +0 -19
- package/dist/LaunchLinearGenomeView/index.d.ts +0 -2
- package/dist/LaunchLinearGenomeView/index.js +0 -70
- package/dist/LinearBareDisplay/configSchema.d.ts +0 -32
- package/dist/LinearBareDisplay/configSchema.js +0 -13
- package/dist/LinearBareDisplay/index.d.ts +0 -4
- package/dist/LinearBareDisplay/index.js +0 -26
- package/dist/LinearBareDisplay/model.d.ts +0 -309
- package/dist/LinearBareDisplay/model.js +0 -38
- package/dist/LinearBasicDisplay/components/AddFiltersDialog.js +0 -61
- package/dist/LinearBasicDisplay/components/SetMaxHeightDialog.js +0 -28
- package/dist/LinearBasicDisplay/configSchema.js +0 -13
- package/dist/LinearBasicDisplay/index.d.ts +0 -4
- package/dist/LinearBasicDisplay/index.js +0 -29
- package/dist/LinearBasicDisplay/model.d.ts +0 -346
- package/dist/LinearBasicDisplay/model.js +0 -192
- package/dist/LinearGenomeView/components/CenterLine.d.ts +0 -6
- package/dist/LinearGenomeView/components/CenterLine.js +0 -38
- package/dist/LinearGenomeView/components/Cytobands.d.ts +0 -9
- package/dist/LinearGenomeView/components/Cytobands.js +0 -89
- package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +0 -7
- package/dist/LinearGenomeView/components/ExportSvgDialog.js +0 -57
- package/dist/LinearGenomeView/components/GetSequenceDialog.d.ts +0 -6
- package/dist/LinearGenomeView/components/GetSequenceDialog.js +0 -109
- package/dist/LinearGenomeView/components/Gridlines.d.ts +0 -7
- package/dist/LinearGenomeView/components/Gridlines.js +0 -70
- package/dist/LinearGenomeView/components/Header.d.ts +0 -5
- package/dist/LinearGenomeView/components/Header.js +0 -38
- package/dist/LinearGenomeView/components/HeaderPanControls.d.ts +0 -6
- package/dist/LinearGenomeView/components/HeaderPanControls.js +0 -27
- package/dist/LinearGenomeView/components/HeaderRegionWidth.d.ts +0 -5
- package/dist/LinearGenomeView/components/HeaderRegionWidth.js +0 -21
- package/dist/LinearGenomeView/components/HeaderTrackSelectorButton.d.ts +0 -5
- package/dist/LinearGenomeView/components/HeaderTrackSelectorButton.js +0 -19
- package/dist/LinearGenomeView/components/HeaderZoomControls.d.ts +0 -5
- package/dist/LinearGenomeView/components/HeaderZoomControls.js +0 -109
- package/dist/LinearGenomeView/components/Highlight.d.ts +0 -12
- package/dist/LinearGenomeView/components/Highlight.js +0 -95
- package/dist/LinearGenomeView/components/ImportForm.d.ts +0 -6
- package/dist/LinearGenomeView/components/ImportForm.js +0 -80
- package/dist/LinearGenomeView/components/ImportFormRefNameAutocomplete.d.ts +0 -11
- package/dist/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +0 -32
- package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +0 -5
- package/dist/LinearGenomeView/components/LinearGenomeView.js +0 -57
- package/dist/LinearGenomeView/components/LinearGenomeViewContainer.d.ts +0 -5
- package/dist/LinearGenomeView/components/LinearGenomeViewContainer.js +0 -98
- package/dist/LinearGenomeView/components/MiniControls.d.ts +0 -5
- package/dist/LinearGenomeView/components/MiniControls.js +0 -36
- package/dist/LinearGenomeView/components/NoTracksActiveButton.d.ts +0 -5
- package/dist/LinearGenomeView/components/NoTracksActiveButton.js +0 -23
- package/dist/LinearGenomeView/components/OverviewHighlight.d.ts +0 -8
- package/dist/LinearGenomeView/components/OverviewHighlight.js +0 -50
- package/dist/LinearGenomeView/components/OverviewRubberband.d.ts +0 -9
- package/dist/LinearGenomeView/components/OverviewRubberband.js +0 -113
- package/dist/LinearGenomeView/components/OverviewRubberbandHoverTooltip.d.ts +0 -10
- package/dist/LinearGenomeView/components/OverviewRubberbandHoverTooltip.js +0 -28
- package/dist/LinearGenomeView/components/OverviewScalebar.d.ts +0 -7
- package/dist/LinearGenomeView/components/OverviewScalebar.js +0 -146
- package/dist/LinearGenomeView/components/OverviewScalebarPolygon.d.ts +0 -8
- package/dist/LinearGenomeView/components/OverviewScalebarPolygon.js +0 -41
- package/dist/LinearGenomeView/components/OverviewScalebarTickLabels.d.ts +0 -10
- package/dist/LinearGenomeView/components/OverviewScalebarTickLabels.js +0 -37
- package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +0 -8
- package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +0 -18
- package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +0 -3
- package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +0 -56
- package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.d.ts +0 -3
- package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js +0 -11
- package/dist/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +0 -16
- package/dist/LinearGenomeView/components/RefNameAutocomplete/index.js +0 -127
- package/dist/LinearGenomeView/components/RefNameAutocomplete/util.d.ts +0 -10
- package/dist/LinearGenomeView/components/RefNameAutocomplete/util.js +0 -53
- package/dist/LinearGenomeView/components/RegionWidthEditorDialog.d.ts +0 -6
- package/dist/LinearGenomeView/components/RegionWidthEditorDialog.js +0 -30
- package/dist/LinearGenomeView/components/Rubberband.d.ts +0 -7
- package/dist/LinearGenomeView/components/Rubberband.js +0 -35
- package/dist/LinearGenomeView/components/RubberbandSpan.d.ts +0 -15
- package/dist/LinearGenomeView/components/RubberbandSpan.js +0 -39
- package/dist/LinearGenomeView/components/RubberbandTooltip.d.ts +0 -5
- package/dist/LinearGenomeView/components/RubberbandTooltip.js +0 -20
- package/dist/LinearGenomeView/components/Scalebar.d.ts +0 -10
- package/dist/LinearGenomeView/components/Scalebar.js +0 -40
- package/dist/LinearGenomeView/components/ScalebarCoordinateLabels.d.ts +0 -6
- package/dist/LinearGenomeView/components/ScalebarCoordinateLabels.js +0 -29
- package/dist/LinearGenomeView/components/ScalebarCoordinateTicks.d.ts +0 -6
- package/dist/LinearGenomeView/components/ScalebarCoordinateTicks.js +0 -38
- package/dist/LinearGenomeView/components/ScalebarRefNameLabels.d.ts +0 -6
- package/dist/LinearGenomeView/components/ScalebarRefNameLabels.js +0 -46
- package/dist/LinearGenomeView/components/SearchBox.d.ts +0 -6
- package/dist/LinearGenomeView/components/SearchBox.js +0 -88
- package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +0 -9
- package/dist/LinearGenomeView/components/SearchResultsDialog.js +0 -15
- package/dist/LinearGenomeView/components/SearchResultsTable.d.ts +0 -8
- package/dist/LinearGenomeView/components/SearchResultsTable.js +0 -74
- package/dist/LinearGenomeView/components/SequenceSearchDialog.d.ts +0 -8
- package/dist/LinearGenomeView/components/SequenceSearchDialog.js +0 -67
- package/dist/LinearGenomeView/components/TrackContainer.d.ts +0 -8
- package/dist/LinearGenomeView/components/TrackContainer.js +0 -51
- package/dist/LinearGenomeView/components/TrackLabel.d.ts +0 -7
- package/dist/LinearGenomeView/components/TrackLabel.js +0 -49
- package/dist/LinearGenomeView/components/TrackLabelContainer.d.ts +0 -8
- package/dist/LinearGenomeView/components/TrackLabelContainer.js +0 -31
- package/dist/LinearGenomeView/components/TrackLabelDragHandle.d.ts +0 -8
- package/dist/LinearGenomeView/components/TrackLabelDragHandle.js +0 -32
- package/dist/LinearGenomeView/components/TrackLabelMenu.d.ts +0 -5
- package/dist/LinearGenomeView/components/TrackLabelMenu.js +0 -93
- package/dist/LinearGenomeView/components/TrackRenderingContainer.d.ts +0 -9
- package/dist/LinearGenomeView/components/TrackRenderingContainer.js +0 -50
- package/dist/LinearGenomeView/components/TracksContainer.d.ts +0 -7
- package/dist/LinearGenomeView/components/TracksContainer.js +0 -84
- package/dist/LinearGenomeView/components/VerticalGuide.d.ts +0 -7
- package/dist/LinearGenomeView/components/VerticalGuide.js +0 -31
- package/dist/LinearGenomeView/components/fetchSequence.d.ts +0 -4
- package/dist/LinearGenomeView/components/fetchSequence.js +0 -29
- package/dist/LinearGenomeView/components/useRangeSelect.d.ts +0 -59
- package/dist/LinearGenomeView/components/useRangeSelect.js +0 -131
- package/dist/LinearGenomeView/components/useSideScroll.d.ts +0 -6
- package/dist/LinearGenomeView/components/useSideScroll.js +0 -60
- package/dist/LinearGenomeView/components/useWheelScroll.d.ts +0 -7
- package/dist/LinearGenomeView/components/useWheelScroll.js +0 -62
- package/dist/LinearGenomeView/components/util.d.ts +0 -25
- package/dist/LinearGenomeView/components/util.js +0 -49
- package/dist/LinearGenomeView/consts.d.ts +0 -7
- package/dist/LinearGenomeView/consts.js +0 -10
- package/dist/LinearGenomeView/index.d.ts +0 -3
- package/dist/LinearGenomeView/index.js +0 -53
- package/dist/LinearGenomeView/model.d.ts +0 -268
- package/dist/LinearGenomeView/model.js +0 -1109
- package/dist/LinearGenomeView/svgcomponents/SVGBackground.d.ts +0 -5
- package/dist/LinearGenomeView/svgcomponents/SVGBackground.js +0 -10
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.d.ts +0 -7
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.js +0 -47
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +0 -6
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +0 -42
- package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +0 -8
- package/dist/LinearGenomeView/svgcomponents/SVGRuler.d.ts +0 -7
- package/dist/LinearGenomeView/svgcomponents/SVGRuler.js +0 -39
- package/dist/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +0 -7
- package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js +0 -17
- package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +0 -7
- package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js +0 -14
- package/dist/LinearGenomeView/svgcomponents/SVGTracks.d.ts +0 -21
- package/dist/LinearGenomeView/svgcomponents/SVGTracks.js +0 -32
- package/dist/LinearGenomeView/svgcomponents/util.d.ts +0 -8
- package/dist/LinearGenomeView/svgcomponents/util.js +0 -8
- package/dist/LinearGenomeView/types.d.ts +0 -43
- package/dist/LinearGenomeView/types.js +0 -2
- package/dist/LinearGenomeView/util.d.ts +0 -26
- package/dist/LinearGenomeView/util.js +0 -138
- package/dist/index.d.ts +0 -353
- package/dist/index.js +0 -120
- package/dist/searchUtils.d.ts +0 -26
- package/dist/searchUtils.js +0 -80
- package/esm/BaseLinearDisplay/components/BlockLoadingMessage.d.ts +0 -6
- package/esm/BaseLinearDisplay/components/BlockLoadingMessage.js +0 -24
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +0 -311
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +0 -286
- package/esm/LinearBasicDisplay/components/AddFiltersDialog.d.ts +0 -9
- package/esm/LinearBasicDisplay/components/SetMaxHeightDialog.d.ts +0 -8
- package/esm/LinearGenomeView/components/ScalebarCoordinateTicks.d.ts +0 -6
- package/esm/LinearGenomeView/components/ScalebarCoordinateTicks.js +0 -36
- /package/{dist/LinearBasicDisplay → esm/LinearFeatureDisplay}/components/AddFiltersDialog.d.ts +0 -0
- /package/{dist/LinearBasicDisplay → esm/LinearFeatureDisplay}/components/SetMaxHeightDialog.d.ts +0 -0
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const configuration_1 = require("@jbrowse/core/configuration");
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const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
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const compositeMap_1 = __importDefault(require("@jbrowse/core/util/compositeMap"));
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const tracks_1 = require("@jbrowse/core/util/tracks");
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const CenterFocusStrong_1 = __importDefault(require("@mui/icons-material/CenterFocusStrong"));
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const ContentCopy_1 = __importDefault(require("@mui/icons-material/ContentCopy"));
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const FeatureDensityMixin_1 = __importDefault(require("./FeatureDensityMixin"));
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const serverSideRenderedBlock_1 = __importDefault(require("./serverSideRenderedBlock"));
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const Tooltip = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../components/Tooltip'))));
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function stateModelFactory() {
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.compose('BaseLinearDisplay', models_1.BaseDisplay, (0, TrackHeightMixin_1.default)(), (0, FeatureDensityMixin_1.default)(), mobx_state_tree_1.types.model({
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get renderDelay() {
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copyInfoToClipboard(feature) {
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track,
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descriptions,
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navToFeature(feature) {
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refName: feature.get('refName'),
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clearFeatureSelection() {
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setFeatureIdUnderMouse(feature) {
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},
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setContextMenuFeature(feature) {
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}))
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.actions(self => {
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async reload() {
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self.setError();
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self.clearFeatureDensityStats();
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val.doReload();
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}
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superReload();
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},
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};
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})
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.views(self => ({
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trackMenuItems() {
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return [];
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},
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contextMenuItems() {
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const feat = self.contextMenuFeature;
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return feat
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? [
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{
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label: 'Open feature details',
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icon: MenuOpen_1.default,
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onClick: () => {
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self.selectFeature(feat);
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},
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},
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{
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label: 'Zoom to feature',
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icon: CenterFocusStrong_1.default,
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onClick: () => {
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self.navToFeature(feat);
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},
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},
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{
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label: 'Copy info to clipboard',
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icon: ContentCopy_1.default,
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onClick: () => {
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self.copyInfoToClipboard(feat);
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},
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},
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]
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: [];
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},
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renderProps() {
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return {
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...(0, tracks_1.getParentRenderProps)(self),
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notReady: !self.featureDensityStatsReady,
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rpcDriverName: self.rpcDriverName,
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displayModel: self,
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onFeatureClick(_, featureId) {
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const f = featureId || self.featureIdUnderMouse;
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if (!f) {
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self.clearFeatureSelection();
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}
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else {
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const feature = self.features.get(f);
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if (feature) {
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self.selectFeature(feature);
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}
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}
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},
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onClick() {
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self.clearFeatureSelection();
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},
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onFeatureContextMenu(_, featureId) {
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const f = featureId || self.featureIdUnderMouse;
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if (!f) {
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self.clearFeatureSelection();
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}
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else {
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afterAttach() {
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.postProcessSnapshot(snap => {
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return rest;
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});
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}
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exports.BaseLinearDisplay = stateModelFactory();
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@@ -1,32 +0,0 @@
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1
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import type { FeatureDensityStats } from '@jbrowse/core/data_adapters/BaseAdapter';
|
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2
|
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import type { Region } from '@jbrowse/core/util/types';
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export default function FeatureDensityMixin(): import("mobx-state-tree").IModelType<{
|
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4
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userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
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userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
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}, {
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|
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featureDensityStatsP: undefined | Promise<FeatureDensityStats>;
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featureDensityStats: undefined | FeatureDensityStats;
|
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currStatsBpPerPx: number;
|
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} & {
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readonly currentBytesRequested: number;
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|
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readonly currentFeatureScreenDensity: number;
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|
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readonly maxFeatureScreenDensity: any;
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readonly featureDensityStatsReady: boolean;
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readonly maxAllowableBytes: number;
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} & {
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afterAttach(): void;
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} & {
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setCurrStatsBpPerPx(n: number): void;
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setFeatureDensityStatsLimit(stats?: FeatureDensityStats): void;
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getFeatureDensityStats(): Promise<FeatureDensityStats>;
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setFeatureDensityStatsP(arg: any): void;
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|
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setFeatureDensityStats(featureDensityStats?: FeatureDensityStats): void;
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clearFeatureDensityStats(): void;
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} & {
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readonly regionTooLarge: boolean;
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readonly regionTooLargeReason: string;
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|
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} & {
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|
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readonly statsReadyAndRegionNotTooLarge: boolean;
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|
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regionCannotBeRenderedText(_region: Region): "" | "Force load to see features";
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regionCannotBeRendered(_region: Region): import("react/jsx-runtime").JSX.Element | null;
|
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|
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
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@@ -1,122 +0,0 @@
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1
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"use strict";
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var __importDefault = (this && this.__importDefault) || function (mod) {
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return (mod && mod.__esModule) ? mod : { "default": mod };
|
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};
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|
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Object.defineProperty(exports, "__esModule", { value: true });
|
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|
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exports.default = FeatureDensityMixin;
|
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7
|
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const jsx_runtime_1 = require("react/jsx-runtime");
|
|
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|
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const configuration_1 = require("@jbrowse/core/configuration");
|
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|
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const util_1 = require("@jbrowse/core/util");
|
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const mobx_1 = require("mobx");
|
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const mobx_state_tree_1 = require("mobx-state-tree");
|
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|
-
const autorunFeatureDensityStats_1 = __importDefault(require("./autorunFeatureDensityStats"));
|
|
13
|
-
const util_2 = require("./util");
|
|
14
|
-
const TooLargeMessage_1 = __importDefault(require("../components/TooLargeMessage"));
|
|
15
|
-
function FeatureDensityMixin() {
|
|
16
|
-
return mobx_state_tree_1.types
|
|
17
|
-
.model({
|
|
18
|
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userBpPerPxLimit: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
|
|
19
|
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userByteSizeLimit: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
|
|
20
|
-
})
|
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|
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.volatile(() => ({
|
|
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|
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featureDensityStatsP: undefined,
|
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|
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featureDensityStats: undefined,
|
|
24
|
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currStatsBpPerPx: 0,
|
|
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|
-
}))
|
|
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|
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.views(self => ({
|
|
27
|
-
get currentBytesRequested() {
|
|
28
|
-
var _a;
|
|
29
|
-
return ((_a = self.featureDensityStats) === null || _a === void 0 ? void 0 : _a.bytes) || 0;
|
|
30
|
-
},
|
|
31
|
-
get currentFeatureScreenDensity() {
|
|
32
|
-
var _a;
|
|
33
|
-
const view = (0, util_1.getContainingView)(self);
|
|
34
|
-
return (((_a = self.featureDensityStats) === null || _a === void 0 ? void 0 : _a.featureDensity) || 0) * view.bpPerPx;
|
|
35
|
-
},
|
|
36
|
-
get maxFeatureScreenDensity() {
|
|
37
|
-
return (0, configuration_1.getConf)(self, 'maxFeatureScreenDensity');
|
|
38
|
-
},
|
|
39
|
-
get featureDensityStatsReady() {
|
|
40
|
-
const view = (0, util_1.getContainingView)(self);
|
|
41
|
-
return (self.currStatsBpPerPx === view.bpPerPx &&
|
|
42
|
-
(!!self.featureDensityStats || !!self.userBpPerPxLimit));
|
|
43
|
-
},
|
|
44
|
-
get maxAllowableBytes() {
|
|
45
|
-
var _a;
|
|
46
|
-
return (self.userByteSizeLimit ||
|
|
47
|
-
((_a = self.featureDensityStats) === null || _a === void 0 ? void 0 : _a.fetchSizeLimit) ||
|
|
48
|
-
(0, configuration_1.getConf)(self, 'fetchSizeLimit'));
|
|
49
|
-
},
|
|
50
|
-
}))
|
|
51
|
-
.actions(self => ({
|
|
52
|
-
afterAttach() {
|
|
53
|
-
(0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(() => (0, autorunFeatureDensityStats_1.default)(self)));
|
|
54
|
-
},
|
|
55
|
-
}))
|
|
56
|
-
.actions(self => ({
|
|
57
|
-
setCurrStatsBpPerPx(n) {
|
|
58
|
-
self.currStatsBpPerPx = n;
|
|
59
|
-
},
|
|
60
|
-
setFeatureDensityStatsLimit(stats) {
|
|
61
|
-
const view = (0, util_1.getContainingView)(self);
|
|
62
|
-
if (stats === null || stats === void 0 ? void 0 : stats.bytes) {
|
|
63
|
-
self.userByteSizeLimit = stats.bytes;
|
|
64
|
-
}
|
|
65
|
-
else {
|
|
66
|
-
self.userBpPerPxLimit = view.bpPerPx;
|
|
67
|
-
}
|
|
68
|
-
},
|
|
69
|
-
getFeatureDensityStats() {
|
|
70
|
-
if (!self.featureDensityStatsP) {
|
|
71
|
-
self.featureDensityStatsP = (0, util_2.getFeatureDensityStatsPre)(self).catch((e) => {
|
|
72
|
-
if ((0, mobx_state_tree_1.isAlive)(self)) {
|
|
73
|
-
this.setFeatureDensityStatsP(undefined);
|
|
74
|
-
}
|
|
75
|
-
throw e;
|
|
76
|
-
});
|
|
77
|
-
}
|
|
78
|
-
return self.featureDensityStatsP;
|
|
79
|
-
},
|
|
80
|
-
setFeatureDensityStatsP(arg) {
|
|
81
|
-
self.featureDensityStatsP = arg;
|
|
82
|
-
},
|
|
83
|
-
setFeatureDensityStats(featureDensityStats) {
|
|
84
|
-
self.featureDensityStats = featureDensityStats;
|
|
85
|
-
},
|
|
86
|
-
clearFeatureDensityStats() {
|
|
87
|
-
self.featureDensityStatsP = undefined;
|
|
88
|
-
self.featureDensityStats = undefined;
|
|
89
|
-
},
|
|
90
|
-
}))
|
|
91
|
-
.views(self => ({
|
|
92
|
-
get regionTooLarge() {
|
|
93
|
-
const view = (0, util_1.getContainingView)(self);
|
|
94
|
-
if (!self.featureDensityStatsReady ||
|
|
95
|
-
view.dynamicBlocks.totalBp < 20000) {
|
|
96
|
-
return false;
|
|
97
|
-
}
|
|
98
|
-
return (self.currentBytesRequested > self.maxAllowableBytes ||
|
|
99
|
-
(self.userBpPerPxLimit
|
|
100
|
-
? view.bpPerPx > self.userBpPerPxLimit
|
|
101
|
-
: self.currentFeatureScreenDensity > self.maxFeatureScreenDensity));
|
|
102
|
-
},
|
|
103
|
-
get regionTooLargeReason() {
|
|
104
|
-
const req = self.currentBytesRequested;
|
|
105
|
-
const max = self.maxAllowableBytes;
|
|
106
|
-
return req && req > max
|
|
107
|
-
? `Requested too much data (${(0, util_2.getDisplayStr)(req)})`
|
|
108
|
-
: '';
|
|
109
|
-
},
|
|
110
|
-
}))
|
|
111
|
-
.views(self => ({
|
|
112
|
-
get statsReadyAndRegionNotTooLarge() {
|
|
113
|
-
return self.featureDensityStatsReady && !self.regionTooLarge;
|
|
114
|
-
},
|
|
115
|
-
regionCannotBeRenderedText(_region) {
|
|
116
|
-
return self.regionTooLarge ? 'Force load to see features' : '';
|
|
117
|
-
},
|
|
118
|
-
regionCannotBeRendered(_region) {
|
|
119
|
-
return self.regionTooLarge ? ((0, jsx_runtime_1.jsx)(TooLargeMessage_1.default, { model: self })) : null;
|
|
120
|
-
},
|
|
121
|
-
}));
|
|
122
|
-
}
|
|
@@ -1,11 +0,0 @@
|
|
|
1
|
-
export default function TrackHeightMixin(): import("mobx-state-tree").IModelType<{
|
|
2
|
-
heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
3
|
-
}, {
|
|
4
|
-
scrollTop: number;
|
|
5
|
-
} & {
|
|
6
|
-
readonly height: number;
|
|
7
|
-
} & {
|
|
8
|
-
setScrollTop(scrollTop: number): void;
|
|
9
|
-
setHeight(displayHeight: number): number;
|
|
10
|
-
resizeHeight(distance: number): number;
|
|
11
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
@@ -1,35 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.default = TrackHeightMixin;
|
|
4
|
-
const configuration_1 = require("@jbrowse/core/configuration");
|
|
5
|
-
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
6
|
-
const minDisplayHeight = 20;
|
|
7
|
-
function TrackHeightMixin() {
|
|
8
|
-
return mobx_state_tree_1.types
|
|
9
|
-
.model({
|
|
10
|
-
heightPreConfig: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.refinement('displayHeight', mobx_state_tree_1.types.number, n => n >= minDisplayHeight)),
|
|
11
|
-
})
|
|
12
|
-
.volatile(() => ({
|
|
13
|
-
scrollTop: 0,
|
|
14
|
-
}))
|
|
15
|
-
.views(self => ({
|
|
16
|
-
get height() {
|
|
17
|
-
var _a;
|
|
18
|
-
return (_a = self.heightPreConfig) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, 'height');
|
|
19
|
-
},
|
|
20
|
-
}))
|
|
21
|
-
.actions(self => ({
|
|
22
|
-
setScrollTop(scrollTop) {
|
|
23
|
-
self.scrollTop = scrollTop;
|
|
24
|
-
},
|
|
25
|
-
setHeight(displayHeight) {
|
|
26
|
-
self.heightPreConfig = Math.max(displayHeight, minDisplayHeight);
|
|
27
|
-
return self.height;
|
|
28
|
-
},
|
|
29
|
-
resizeHeight(distance) {
|
|
30
|
-
const oldHeight = self.height;
|
|
31
|
-
const newHeight = this.setHeight(self.height + distance);
|
|
32
|
-
return newHeight - oldHeight;
|
|
33
|
-
},
|
|
34
|
-
}));
|
|
35
|
-
}
|
|
@@ -1,33 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.default = autorunFeatureDensityStats;
|
|
4
|
-
const util_1 = require("@jbrowse/core/util");
|
|
5
|
-
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
6
|
-
async function autorunFeatureDensityStats(self) {
|
|
7
|
-
var _a;
|
|
8
|
-
try {
|
|
9
|
-
const view = (0, util_1.getContainingView)(self);
|
|
10
|
-
if (!view.initialized ||
|
|
11
|
-
!view.staticBlocks.contentBlocks.length ||
|
|
12
|
-
view.bpPerPx === self.currStatsBpPerPx ||
|
|
13
|
-
self.error) {
|
|
14
|
-
return;
|
|
15
|
-
}
|
|
16
|
-
if (((_a = self.featureDensityStats) === null || _a === void 0 ? void 0 : _a.featureDensity) !== undefined) {
|
|
17
|
-
self.setCurrStatsBpPerPx(view.bpPerPx);
|
|
18
|
-
return;
|
|
19
|
-
}
|
|
20
|
-
self.clearFeatureDensityStats();
|
|
21
|
-
self.setCurrStatsBpPerPx(view.bpPerPx);
|
|
22
|
-
const stats = await self.getFeatureDensityStats();
|
|
23
|
-
if ((0, mobx_state_tree_1.isAlive)(self)) {
|
|
24
|
-
self.setFeatureDensityStats(stats);
|
|
25
|
-
}
|
|
26
|
-
}
|
|
27
|
-
catch (e) {
|
|
28
|
-
console.error(e);
|
|
29
|
-
if ((0, mobx_state_tree_1.isAlive)(self) && !(0, util_1.isAbortException)(e)) {
|
|
30
|
-
self.setError(e);
|
|
31
|
-
}
|
|
32
|
-
}
|
|
33
|
-
}
|
|
@@ -1,29 +0,0 @@
|
|
|
1
|
-
declare const baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
2
|
-
maxFeatureScreenDensity: {
|
|
3
|
-
type: string;
|
|
4
|
-
description: string;
|
|
5
|
-
defaultValue: number;
|
|
6
|
-
};
|
|
7
|
-
fetchSizeLimit: {
|
|
8
|
-
type: string;
|
|
9
|
-
defaultValue: number;
|
|
10
|
-
description: string;
|
|
11
|
-
};
|
|
12
|
-
height: {
|
|
13
|
-
type: string;
|
|
14
|
-
defaultValue: number;
|
|
15
|
-
description: string;
|
|
16
|
-
};
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|
17
|
-
mouseover: {
|
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18
|
-
type: string;
|
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19
|
-
description: string;
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|
20
|
-
defaultValue: string;
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21
|
-
contextVariable: string[];
|
|
22
|
-
};
|
|
23
|
-
jexlFilters: {
|
|
24
|
-
type: string;
|
|
25
|
-
description: string;
|
|
26
|
-
defaultValue: never[];
|
|
27
|
-
};
|
|
28
|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
|
|
29
|
-
export default baseLinearDisplayConfigSchema;
|
|
@@ -1,35 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
const configuration_1 = require("@jbrowse/core/configuration");
|
|
4
|
-
function x() { }
|
|
5
|
-
const baseLinearDisplayConfigSchema = (0, configuration_1.ConfigurationSchema)('BaseLinearDisplay', {
|
|
6
|
-
maxFeatureScreenDensity: {
|
|
7
|
-
type: 'number',
|
|
8
|
-
description: 'maximum features per pixel that is displayed in the view, used if byte size estimates not available',
|
|
9
|
-
defaultValue: 0.3,
|
|
10
|
-
},
|
|
11
|
-
fetchSizeLimit: {
|
|
12
|
-
type: 'number',
|
|
13
|
-
defaultValue: 1000000,
|
|
14
|
-
description: "maximum data to attempt to download for a given track, used if adapter doesn't specify one",
|
|
15
|
-
},
|
|
16
|
-
height: {
|
|
17
|
-
type: 'number',
|
|
18
|
-
defaultValue: 100,
|
|
19
|
-
description: 'default height for the track',
|
|
20
|
-
},
|
|
21
|
-
mouseover: {
|
|
22
|
-
type: 'string',
|
|
23
|
-
description: 'text to display when the cursor hovers over a feature',
|
|
24
|
-
defaultValue: `jexl:get(feature,'name')`,
|
|
25
|
-
contextVariable: ['feature'],
|
|
26
|
-
},
|
|
27
|
-
jexlFilters: {
|
|
28
|
-
type: 'stringArray',
|
|
29
|
-
description: 'default set of jexl filters to apply to a track. note: these do not use the jexl prefix because they have a deferred evaluation system',
|
|
30
|
-
defaultValue: [],
|
|
31
|
-
},
|
|
32
|
-
}, {
|
|
33
|
-
explicitIdentifier: 'displayId',
|
|
34
|
-
});
|
|
35
|
-
exports.default = baseLinearDisplayConfigSchema;
|
|
@@ -1,7 +0,0 @@
|
|
|
1
|
-
import type { BaseLinearDisplayModel } from './BaseLinearDisplayModel';
|
|
2
|
-
import type { ExportSvgOptions } from '../../LinearGenomeView/types';
|
|
3
|
-
import type { ThemeOptions } from '@mui/material';
|
|
4
|
-
export declare function renderBaseLinearDisplaySvg(self: BaseLinearDisplayModel, opts: ExportSvgOptions & {
|
|
5
|
-
overrideHeight: number;
|
|
6
|
-
theme?: ThemeOptions;
|
|
7
|
-
}): Promise<import("react/jsx-runtime").JSX.Element>;
|