@jbrowse/plugin-linear-genome-view 3.6.5 → 4.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (392) hide show
  1. package/esm/BaseLinearDisplay/SVGLegend.d.ts +6 -0
  2. package/esm/BaseLinearDisplay/SVGLegend.js +17 -0
  3. package/esm/BaseLinearDisplay/calculateSvgLegendWidth.d.ts +2 -0
  4. package/esm/BaseLinearDisplay/calculateSvgLegendWidth.js +11 -0
  5. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +3 -3
  6. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js +13 -24
  7. package/esm/BaseLinearDisplay/components/Block.js +2 -2
  8. package/esm/BaseLinearDisplay/components/BlockErrorMessage.js +2 -2
  9. package/esm/BaseLinearDisplay/components/BlockMsg.js +11 -2
  10. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/CollapseIntronsDialog.d.ts +9 -0
  11. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/CollapseIntronsDialog.js +42 -0
  12. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/TranscriptTable.d.ts +11 -0
  13. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/TranscriptTable.js +40 -0
  14. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/util.d.ts +19 -0
  15. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/util.js +45 -0
  16. package/esm/BaseLinearDisplay/components/FloatingLabels.d.ts +5 -0
  17. package/esm/BaseLinearDisplay/components/FloatingLabels.js +89 -0
  18. package/esm/BaseLinearDisplay/components/FloatingLegend.d.ts +8 -0
  19. package/esm/BaseLinearDisplay/components/FloatingLegend.js +43 -0
  20. package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +1 -5
  21. package/esm/BaseLinearDisplay/components/LinearBlocks.js +5 -42
  22. package/esm/BaseLinearDisplay/components/LoadingOverlay.d.ts +4 -0
  23. package/esm/BaseLinearDisplay/components/LoadingOverlay.js +49 -0
  24. package/esm/BaseLinearDisplay/components/MaxHeightReachedIndicator.d.ts +4 -0
  25. package/esm/BaseLinearDisplay/components/MaxHeightReachedIndicator.js +26 -0
  26. package/esm/BaseLinearDisplay/components/MenuPage.d.ts +8 -0
  27. package/esm/BaseLinearDisplay/components/MenuPage.js +24 -0
  28. package/esm/BaseLinearDisplay/components/NonBlockCanvasDisplayComponent.d.ts +19 -0
  29. package/esm/BaseLinearDisplay/components/NonBlockCanvasDisplayComponent.js +48 -0
  30. package/esm/BaseLinearDisplay/components/RenderedBlocks.d.ts +12 -0
  31. package/esm/BaseLinearDisplay/components/RenderedBlocks.js +22 -0
  32. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
  33. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +5 -8
  34. package/esm/BaseLinearDisplay/components/TooLargeMessage.js +3 -3
  35. package/esm/BaseLinearDisplay/components/Tooltip.d.ts +2 -0
  36. package/esm/BaseLinearDisplay/components/Tooltip.js +10 -7
  37. package/esm/BaseLinearDisplay/components/types.d.ts +1 -0
  38. package/esm/BaseLinearDisplay/components/types.js +1 -0
  39. package/esm/BaseLinearDisplay/components/util.d.ts +21 -0
  40. package/esm/BaseLinearDisplay/components/util.js +116 -0
  41. package/esm/BaseLinearDisplay/index.d.ts +17 -8
  42. package/esm/BaseLinearDisplay/index.js +13 -6
  43. package/esm/BaseLinearDisplay/model.d.ts +1177 -0
  44. package/esm/BaseLinearDisplay/model.js +424 -0
  45. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +5 -5
  46. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.js +11 -14
  47. package/esm/BaseLinearDisplay/models/NonBlockCanvasDisplayMixin.d.ts +21 -0
  48. package/esm/BaseLinearDisplay/models/NonBlockCanvasDisplayMixin.js +46 -0
  49. package/esm/BaseLinearDisplay/models/TrackHeightMixin.d.ts +3 -3
  50. package/esm/BaseLinearDisplay/models/TrackHeightMixin.js +2 -3
  51. package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +1 -1
  52. package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.js +2 -3
  53. package/esm/BaseLinearDisplay/models/calculateLabelPositions.d.ts +24 -0
  54. package/esm/BaseLinearDisplay/models/calculateLabelPositions.js +60 -0
  55. package/esm/BaseLinearDisplay/models/configSchema.d.ts +2 -2
  56. package/esm/BaseLinearDisplay/models/configSchema.js +3 -3
  57. package/esm/BaseLinearDisplay/models/renderSvg.d.ts +3 -7
  58. package/esm/BaseLinearDisplay/models/renderSvg.js +22 -11
  59. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +37 -19
  60. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +151 -135
  61. package/esm/BaseLinearDisplay/models/util.d.ts +4 -4
  62. package/esm/BaseLinearDisplay/models/util.js +16 -13
  63. package/esm/BaseLinearDisplay/renderSvg.d.ts +3 -0
  64. package/esm/BaseLinearDisplay/renderSvg.js +59 -0
  65. package/esm/BaseLinearDisplay/types.d.ts +47 -0
  66. package/esm/BaseLinearDisplay/types.js +3 -0
  67. package/esm/BaseLinearDisplay/util.d.ts +15 -0
  68. package/esm/BaseLinearDisplay/util.js +61 -0
  69. package/esm/BasicTrack/configSchema.d.ts +16 -11
  70. package/esm/BasicTrack/index.js +1 -1
  71. package/esm/FeatureTrack/configSchema.d.ts +16 -11
  72. package/esm/FeatureTrack/index.js +1 -1
  73. package/esm/LaunchLinearGenomeView/index.js +12 -62
  74. package/esm/LinearBareDisplay/configSchema.d.ts +4 -4
  75. package/esm/LinearBareDisplay/configSchema.js +1 -1
  76. package/esm/LinearBareDisplay/index.d.ts +2 -2
  77. package/esm/LinearBareDisplay/index.js +5 -5
  78. package/esm/LinearBareDisplay/model.d.ts +959 -92
  79. package/esm/LinearBareDisplay/model.js +3 -6
  80. package/esm/LinearBasicDisplay/components/LinearBasicDisplayComponent.d.ts +5 -0
  81. package/esm/LinearBasicDisplay/components/LinearBasicDisplayComponent.js +9 -0
  82. package/esm/LinearBasicDisplay/configSchema.d.ts +4 -4
  83. package/esm/LinearBasicDisplay/configSchema.js +1 -1
  84. package/esm/LinearBasicDisplay/index.d.ts +2 -2
  85. package/esm/LinearBasicDisplay/index.js +6 -6
  86. package/esm/LinearBasicDisplay/model.d.ts +1134 -122
  87. package/esm/LinearBasicDisplay/model.js +116 -116
  88. package/esm/{LinearBasicDisplay → LinearFeatureDisplay}/components/AddFiltersDialog.js +2 -2
  89. package/esm/{LinearBasicDisplay → LinearFeatureDisplay}/components/SetMaxHeightDialog.js +3 -3
  90. package/{dist/LinearBasicDisplay → esm/LinearFeatureDisplay}/configSchema.d.ts +4 -4
  91. package/esm/LinearFeatureDisplay/configSchema.js +11 -0
  92. package/esm/LinearFeatureDisplay/index.d.ts +3 -0
  93. package/esm/LinearFeatureDisplay/index.js +2 -0
  94. package/esm/LinearFeatureDisplay/model.d.ts +1415 -0
  95. package/esm/LinearFeatureDisplay/model.js +265 -0
  96. package/esm/LinearGenomeView/SVGErrorBox.d.ts +5 -0
  97. package/esm/LinearGenomeView/SVGErrorBox.js +4 -0
  98. package/esm/LinearGenomeView/afterAttach.d.ts +5 -0
  99. package/esm/LinearGenomeView/afterAttach.js +95 -0
  100. package/esm/LinearGenomeView/components/CenterLine.js +6 -4
  101. package/esm/LinearGenomeView/components/Cytobands.js +4 -4
  102. package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +1 -1
  103. package/esm/LinearGenomeView/components/ExportSvgDialog.js +5 -1
  104. package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +8 -2
  105. package/esm/LinearGenomeView/components/GetSequenceDialog.js +13 -16
  106. package/esm/LinearGenomeView/components/Gridlines.js +18 -15
  107. package/esm/LinearGenomeView/components/Header.js +9 -9
  108. package/esm/LinearGenomeView/components/HeaderPanControls.js +2 -2
  109. package/esm/LinearGenomeView/components/HeaderRegionWidth.js +4 -5
  110. package/esm/LinearGenomeView/components/HeaderTrackSelectorButton.js +2 -2
  111. package/esm/LinearGenomeView/components/HeaderZoomControls.js +3 -3
  112. package/esm/LinearGenomeView/components/Highlight.d.ts +1 -1
  113. package/esm/LinearGenomeView/components/Highlight.js +6 -6
  114. package/esm/LinearGenomeView/components/ImportForm.d.ts +1 -1
  115. package/esm/LinearGenomeView/components/ImportForm.js +14 -12
  116. package/esm/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +3 -3
  117. package/esm/LinearGenomeView/components/LinearGenomeView.js +7 -7
  118. package/esm/LinearGenomeView/components/LinearGenomeViewContainer.js +7 -8
  119. package/esm/LinearGenomeView/components/MiniControls.js +6 -6
  120. package/esm/LinearGenomeView/components/NoTracksActiveButton.js +2 -2
  121. package/esm/LinearGenomeView/components/OverviewHighlight.d.ts +1 -1
  122. package/esm/LinearGenomeView/components/OverviewHighlight.js +5 -5
  123. package/esm/LinearGenomeView/components/OverviewRubberband.js +4 -4
  124. package/esm/LinearGenomeView/components/OverviewRubberbandHoverTooltip.js +9 -5
  125. package/esm/LinearGenomeView/components/OverviewScalebar.js +36 -28
  126. package/esm/LinearGenomeView/components/OverviewScalebarPolygon.js +5 -5
  127. package/esm/LinearGenomeView/components/OverviewScalebarTickLabels.js +7 -7
  128. package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +1 -1
  129. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +1 -1
  130. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.js +10 -10
  131. package/esm/LinearGenomeView/components/RegionWidthEditorDialog.d.ts +1 -1
  132. package/esm/LinearGenomeView/components/RegionWidthEditorDialog.js +6 -4
  133. package/esm/LinearGenomeView/components/Rubberband.js +9 -7
  134. package/esm/LinearGenomeView/components/RubberbandSpan.js +4 -5
  135. package/esm/LinearGenomeView/components/Scalebar.js +8 -10
  136. package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.d.ts +1 -1
  137. package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.js +50 -17
  138. package/esm/LinearGenomeView/components/ScalebarRefNameLabels.d.ts +1 -1
  139. package/esm/LinearGenomeView/components/ScalebarRefNameLabels.js +13 -11
  140. package/esm/LinearGenomeView/components/SearchBox.d.ts +1 -1
  141. package/esm/LinearGenomeView/components/SearchBox.js +8 -9
  142. package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts +1 -1
  143. package/esm/LinearGenomeView/components/SearchResultsDialog.js +2 -2
  144. package/esm/LinearGenomeView/components/SearchResultsTable.d.ts +1 -1
  145. package/esm/LinearGenomeView/components/SearchResultsTable.js +4 -6
  146. package/esm/LinearGenomeView/components/SequenceSearchDialog.js +6 -6
  147. package/esm/LinearGenomeView/components/TrackContainer.js +32 -20
  148. package/esm/LinearGenomeView/components/TrackLabel.js +10 -11
  149. package/esm/LinearGenomeView/components/TrackLabelContainer.js +7 -8
  150. package/esm/LinearGenomeView/components/TrackLabelDragHandle.js +1 -1
  151. package/esm/LinearGenomeView/components/TrackLabelMenu.js +80 -68
  152. package/esm/LinearGenomeView/components/TrackRenderingContainer.d.ts +1 -2
  153. package/esm/LinearGenomeView/components/TrackRenderingContainer.js +5 -5
  154. package/esm/LinearGenomeView/components/TracksContainer.js +18 -15
  155. package/esm/LinearGenomeView/components/VerticalGuide.js +5 -3
  156. package/esm/LinearGenomeView/components/fetchSequence.d.ts +7 -2
  157. package/esm/LinearGenomeView/components/useRangeSelect.d.ts +27 -2
  158. package/esm/LinearGenomeView/components/useRangeSelect.js +26 -20
  159. package/esm/LinearGenomeView/components/useWheelScroll.js +22 -12
  160. package/esm/LinearGenomeView/components/util.d.ts +2 -13
  161. package/esm/LinearGenomeView/components/util.js +12 -31
  162. package/esm/LinearGenomeView/index.d.ts +1 -1
  163. package/esm/LinearGenomeView/index.js +3 -3
  164. package/esm/LinearGenomeView/keyboardHandler.d.ts +2 -0
  165. package/esm/LinearGenomeView/keyboardHandler.js +29 -0
  166. package/esm/LinearGenomeView/menuItems.d.ts +7 -0
  167. package/esm/LinearGenomeView/menuItems.js +299 -0
  168. package/esm/LinearGenomeView/model.d.ts +92 -89
  169. package/esm/LinearGenomeView/model.js +166 -414
  170. package/esm/LinearGenomeView/svgExportUtil.d.ts +9 -0
  171. package/esm/LinearGenomeView/svgExportUtil.js +6 -0
  172. package/{dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts → esm/LinearGenomeView/svgcomponents/SVGGridlines.d.ts} +2 -2
  173. package/esm/LinearGenomeView/svgcomponents/SVGGridlines.js +20 -0
  174. package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +5 -5
  175. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +4 -3
  176. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +24 -12
  177. package/esm/LinearGenomeView/svgcomponents/SVGRuler.js +13 -5
  178. package/esm/LinearGenomeView/svgcomponents/SVGTracks.js +2 -2
  179. package/esm/LinearGenomeView/types.d.ts +5 -1
  180. package/esm/LinearGenomeView/util.d.ts +2 -2
  181. package/esm/LinearGenomeView/util.js +8 -6
  182. package/esm/index.d.ts +975 -94
  183. package/esm/index.js +37 -38
  184. package/esm/searchUtils.d.ts +1 -1
  185. package/esm/searchUtils.js +6 -4
  186. package/package.json +28 -33
  187. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +0 -8
  188. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +0 -72
  189. package/dist/BaseLinearDisplay/components/Block.d.ts +0 -14
  190. package/dist/BaseLinearDisplay/components/Block.js +0 -50
  191. package/dist/BaseLinearDisplay/components/BlockErrorMessage.d.ts +0 -7
  192. package/dist/BaseLinearDisplay/components/BlockErrorMessage.js +0 -27
  193. package/dist/BaseLinearDisplay/components/BlockLoadingMessage.d.ts +0 -6
  194. package/dist/BaseLinearDisplay/components/BlockLoadingMessage.js +0 -26
  195. package/dist/BaseLinearDisplay/components/BlockMsg.d.ts +0 -6
  196. package/dist/BaseLinearDisplay/components/BlockMsg.js +0 -20
  197. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +0 -9
  198. package/dist/BaseLinearDisplay/components/LinearBlocks.js +0 -61
  199. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +0 -11
  200. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +0 -59
  201. package/dist/BaseLinearDisplay/components/TooLargeMessage.d.ts +0 -10
  202. package/dist/BaseLinearDisplay/components/TooLargeMessage.js +0 -25
  203. package/dist/BaseLinearDisplay/components/Tooltip.d.ts +0 -11
  204. package/dist/BaseLinearDisplay/components/Tooltip.js +0 -24
  205. package/dist/BaseLinearDisplay/index.d.ts +0 -8
  206. package/dist/BaseLinearDisplay/index.js +0 -20
  207. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +0 -311
  208. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +0 -325
  209. package/dist/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +0 -32
  210. package/dist/BaseLinearDisplay/models/FeatureDensityMixin.js +0 -122
  211. package/dist/BaseLinearDisplay/models/TrackHeightMixin.d.ts +0 -11
  212. package/dist/BaseLinearDisplay/models/TrackHeightMixin.js +0 -35
  213. package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +0 -2
  214. package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.js +0 -33
  215. package/dist/BaseLinearDisplay/models/configSchema.d.ts +0 -29
  216. package/dist/BaseLinearDisplay/models/configSchema.js +0 -35
  217. package/dist/BaseLinearDisplay/models/renderSvg.d.ts +0 -7
  218. package/dist/BaseLinearDisplay/models/renderSvg.js +0 -80
  219. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +0 -78
  220. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +0 -229
  221. package/dist/BaseLinearDisplay/models/util.d.ts +0 -22
  222. package/dist/BaseLinearDisplay/models/util.js +0 -45
  223. package/dist/BasicTrack/configSchema.d.ts +0 -80
  224. package/dist/BasicTrack/configSchema.js +0 -10
  225. package/dist/BasicTrack/index.d.ts +0 -2
  226. package/dist/BasicTrack/index.js +0 -18
  227. package/dist/FeatureTrack/configSchema.d.ts +0 -80
  228. package/dist/FeatureTrack/configSchema.js +0 -10
  229. package/dist/FeatureTrack/index.d.ts +0 -2
  230. package/dist/FeatureTrack/index.js +0 -19
  231. package/dist/LaunchLinearGenomeView/index.d.ts +0 -2
  232. package/dist/LaunchLinearGenomeView/index.js +0 -70
  233. package/dist/LinearBareDisplay/configSchema.d.ts +0 -32
  234. package/dist/LinearBareDisplay/configSchema.js +0 -13
  235. package/dist/LinearBareDisplay/index.d.ts +0 -4
  236. package/dist/LinearBareDisplay/index.js +0 -26
  237. package/dist/LinearBareDisplay/model.d.ts +0 -309
  238. package/dist/LinearBareDisplay/model.js +0 -38
  239. package/dist/LinearBasicDisplay/components/AddFiltersDialog.js +0 -61
  240. package/dist/LinearBasicDisplay/components/SetMaxHeightDialog.js +0 -28
  241. package/dist/LinearBasicDisplay/configSchema.js +0 -13
  242. package/dist/LinearBasicDisplay/index.d.ts +0 -4
  243. package/dist/LinearBasicDisplay/index.js +0 -29
  244. package/dist/LinearBasicDisplay/model.d.ts +0 -346
  245. package/dist/LinearBasicDisplay/model.js +0 -192
  246. package/dist/LinearGenomeView/components/CenterLine.d.ts +0 -6
  247. package/dist/LinearGenomeView/components/CenterLine.js +0 -38
  248. package/dist/LinearGenomeView/components/Cytobands.d.ts +0 -9
  249. package/dist/LinearGenomeView/components/Cytobands.js +0 -89
  250. package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +0 -7
  251. package/dist/LinearGenomeView/components/ExportSvgDialog.js +0 -57
  252. package/dist/LinearGenomeView/components/GetSequenceDialog.d.ts +0 -6
  253. package/dist/LinearGenomeView/components/GetSequenceDialog.js +0 -109
  254. package/dist/LinearGenomeView/components/Gridlines.d.ts +0 -7
  255. package/dist/LinearGenomeView/components/Gridlines.js +0 -70
  256. package/dist/LinearGenomeView/components/Header.d.ts +0 -5
  257. package/dist/LinearGenomeView/components/Header.js +0 -38
  258. package/dist/LinearGenomeView/components/HeaderPanControls.d.ts +0 -6
  259. package/dist/LinearGenomeView/components/HeaderPanControls.js +0 -27
  260. package/dist/LinearGenomeView/components/HeaderRegionWidth.d.ts +0 -5
  261. package/dist/LinearGenomeView/components/HeaderRegionWidth.js +0 -21
  262. package/dist/LinearGenomeView/components/HeaderTrackSelectorButton.d.ts +0 -5
  263. package/dist/LinearGenomeView/components/HeaderTrackSelectorButton.js +0 -19
  264. package/dist/LinearGenomeView/components/HeaderZoomControls.d.ts +0 -5
  265. package/dist/LinearGenomeView/components/HeaderZoomControls.js +0 -109
  266. package/dist/LinearGenomeView/components/Highlight.d.ts +0 -12
  267. package/dist/LinearGenomeView/components/Highlight.js +0 -95
  268. package/dist/LinearGenomeView/components/ImportForm.d.ts +0 -6
  269. package/dist/LinearGenomeView/components/ImportForm.js +0 -80
  270. package/dist/LinearGenomeView/components/ImportFormRefNameAutocomplete.d.ts +0 -11
  271. package/dist/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +0 -32
  272. package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +0 -5
  273. package/dist/LinearGenomeView/components/LinearGenomeView.js +0 -57
  274. package/dist/LinearGenomeView/components/LinearGenomeViewContainer.d.ts +0 -5
  275. package/dist/LinearGenomeView/components/LinearGenomeViewContainer.js +0 -98
  276. package/dist/LinearGenomeView/components/MiniControls.d.ts +0 -5
  277. package/dist/LinearGenomeView/components/MiniControls.js +0 -36
  278. package/dist/LinearGenomeView/components/NoTracksActiveButton.d.ts +0 -5
  279. package/dist/LinearGenomeView/components/NoTracksActiveButton.js +0 -23
  280. package/dist/LinearGenomeView/components/OverviewHighlight.d.ts +0 -8
  281. package/dist/LinearGenomeView/components/OverviewHighlight.js +0 -50
  282. package/dist/LinearGenomeView/components/OverviewRubberband.d.ts +0 -9
  283. package/dist/LinearGenomeView/components/OverviewRubberband.js +0 -113
  284. package/dist/LinearGenomeView/components/OverviewRubberbandHoverTooltip.d.ts +0 -10
  285. package/dist/LinearGenomeView/components/OverviewRubberbandHoverTooltip.js +0 -28
  286. package/dist/LinearGenomeView/components/OverviewScalebar.d.ts +0 -7
  287. package/dist/LinearGenomeView/components/OverviewScalebar.js +0 -146
  288. package/dist/LinearGenomeView/components/OverviewScalebarPolygon.d.ts +0 -8
  289. package/dist/LinearGenomeView/components/OverviewScalebarPolygon.js +0 -41
  290. package/dist/LinearGenomeView/components/OverviewScalebarTickLabels.d.ts +0 -10
  291. package/dist/LinearGenomeView/components/OverviewScalebarTickLabels.js +0 -37
  292. package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +0 -8
  293. package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +0 -18
  294. package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +0 -3
  295. package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +0 -56
  296. package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.d.ts +0 -3
  297. package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js +0 -11
  298. package/dist/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +0 -16
  299. package/dist/LinearGenomeView/components/RefNameAutocomplete/index.js +0 -127
  300. package/dist/LinearGenomeView/components/RefNameAutocomplete/util.d.ts +0 -10
  301. package/dist/LinearGenomeView/components/RefNameAutocomplete/util.js +0 -53
  302. package/dist/LinearGenomeView/components/RegionWidthEditorDialog.d.ts +0 -6
  303. package/dist/LinearGenomeView/components/RegionWidthEditorDialog.js +0 -30
  304. package/dist/LinearGenomeView/components/Rubberband.d.ts +0 -7
  305. package/dist/LinearGenomeView/components/Rubberband.js +0 -35
  306. package/dist/LinearGenomeView/components/RubberbandSpan.d.ts +0 -15
  307. package/dist/LinearGenomeView/components/RubberbandSpan.js +0 -39
  308. package/dist/LinearGenomeView/components/RubberbandTooltip.d.ts +0 -5
  309. package/dist/LinearGenomeView/components/RubberbandTooltip.js +0 -20
  310. package/dist/LinearGenomeView/components/Scalebar.d.ts +0 -10
  311. package/dist/LinearGenomeView/components/Scalebar.js +0 -40
  312. package/dist/LinearGenomeView/components/ScalebarCoordinateLabels.d.ts +0 -6
  313. package/dist/LinearGenomeView/components/ScalebarCoordinateLabels.js +0 -29
  314. package/dist/LinearGenomeView/components/ScalebarCoordinateTicks.d.ts +0 -6
  315. package/dist/LinearGenomeView/components/ScalebarCoordinateTicks.js +0 -38
  316. package/dist/LinearGenomeView/components/ScalebarRefNameLabels.d.ts +0 -6
  317. package/dist/LinearGenomeView/components/ScalebarRefNameLabels.js +0 -46
  318. package/dist/LinearGenomeView/components/SearchBox.d.ts +0 -6
  319. package/dist/LinearGenomeView/components/SearchBox.js +0 -88
  320. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +0 -9
  321. package/dist/LinearGenomeView/components/SearchResultsDialog.js +0 -15
  322. package/dist/LinearGenomeView/components/SearchResultsTable.d.ts +0 -8
  323. package/dist/LinearGenomeView/components/SearchResultsTable.js +0 -74
  324. package/dist/LinearGenomeView/components/SequenceSearchDialog.d.ts +0 -8
  325. package/dist/LinearGenomeView/components/SequenceSearchDialog.js +0 -67
  326. package/dist/LinearGenomeView/components/TrackContainer.d.ts +0 -8
  327. package/dist/LinearGenomeView/components/TrackContainer.js +0 -51
  328. package/dist/LinearGenomeView/components/TrackLabel.d.ts +0 -7
  329. package/dist/LinearGenomeView/components/TrackLabel.js +0 -49
  330. package/dist/LinearGenomeView/components/TrackLabelContainer.d.ts +0 -8
  331. package/dist/LinearGenomeView/components/TrackLabelContainer.js +0 -31
  332. package/dist/LinearGenomeView/components/TrackLabelDragHandle.d.ts +0 -8
  333. package/dist/LinearGenomeView/components/TrackLabelDragHandle.js +0 -32
  334. package/dist/LinearGenomeView/components/TrackLabelMenu.d.ts +0 -5
  335. package/dist/LinearGenomeView/components/TrackLabelMenu.js +0 -93
  336. package/dist/LinearGenomeView/components/TrackRenderingContainer.d.ts +0 -9
  337. package/dist/LinearGenomeView/components/TrackRenderingContainer.js +0 -50
  338. package/dist/LinearGenomeView/components/TracksContainer.d.ts +0 -7
  339. package/dist/LinearGenomeView/components/TracksContainer.js +0 -84
  340. package/dist/LinearGenomeView/components/VerticalGuide.d.ts +0 -7
  341. package/dist/LinearGenomeView/components/VerticalGuide.js +0 -31
  342. package/dist/LinearGenomeView/components/fetchSequence.d.ts +0 -4
  343. package/dist/LinearGenomeView/components/fetchSequence.js +0 -29
  344. package/dist/LinearGenomeView/components/useRangeSelect.d.ts +0 -59
  345. package/dist/LinearGenomeView/components/useRangeSelect.js +0 -131
  346. package/dist/LinearGenomeView/components/useSideScroll.d.ts +0 -6
  347. package/dist/LinearGenomeView/components/useSideScroll.js +0 -60
  348. package/dist/LinearGenomeView/components/useWheelScroll.d.ts +0 -7
  349. package/dist/LinearGenomeView/components/useWheelScroll.js +0 -62
  350. package/dist/LinearGenomeView/components/util.d.ts +0 -25
  351. package/dist/LinearGenomeView/components/util.js +0 -49
  352. package/dist/LinearGenomeView/consts.d.ts +0 -7
  353. package/dist/LinearGenomeView/consts.js +0 -10
  354. package/dist/LinearGenomeView/index.d.ts +0 -3
  355. package/dist/LinearGenomeView/index.js +0 -53
  356. package/dist/LinearGenomeView/model.d.ts +0 -268
  357. package/dist/LinearGenomeView/model.js +0 -1109
  358. package/dist/LinearGenomeView/svgcomponents/SVGBackground.d.ts +0 -5
  359. package/dist/LinearGenomeView/svgcomponents/SVGBackground.js +0 -10
  360. package/dist/LinearGenomeView/svgcomponents/SVGHeader.d.ts +0 -7
  361. package/dist/LinearGenomeView/svgcomponents/SVGHeader.js +0 -47
  362. package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +0 -6
  363. package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +0 -42
  364. package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +0 -8
  365. package/dist/LinearGenomeView/svgcomponents/SVGRuler.d.ts +0 -7
  366. package/dist/LinearGenomeView/svgcomponents/SVGRuler.js +0 -39
  367. package/dist/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +0 -7
  368. package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js +0 -17
  369. package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +0 -7
  370. package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js +0 -14
  371. package/dist/LinearGenomeView/svgcomponents/SVGTracks.d.ts +0 -21
  372. package/dist/LinearGenomeView/svgcomponents/SVGTracks.js +0 -32
  373. package/dist/LinearGenomeView/svgcomponents/util.d.ts +0 -8
  374. package/dist/LinearGenomeView/svgcomponents/util.js +0 -8
  375. package/dist/LinearGenomeView/types.d.ts +0 -43
  376. package/dist/LinearGenomeView/types.js +0 -2
  377. package/dist/LinearGenomeView/util.d.ts +0 -26
  378. package/dist/LinearGenomeView/util.js +0 -138
  379. package/dist/index.d.ts +0 -353
  380. package/dist/index.js +0 -120
  381. package/dist/searchUtils.d.ts +0 -26
  382. package/dist/searchUtils.js +0 -80
  383. package/esm/BaseLinearDisplay/components/BlockLoadingMessage.d.ts +0 -6
  384. package/esm/BaseLinearDisplay/components/BlockLoadingMessage.js +0 -24
  385. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +0 -311
  386. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +0 -286
  387. package/esm/LinearBasicDisplay/components/AddFiltersDialog.d.ts +0 -9
  388. package/esm/LinearBasicDisplay/components/SetMaxHeightDialog.d.ts +0 -8
  389. package/esm/LinearGenomeView/components/ScalebarCoordinateTicks.d.ts +0 -6
  390. package/esm/LinearGenomeView/components/ScalebarCoordinateTicks.js +0 -36
  391. /package/{dist/LinearBasicDisplay → esm/LinearFeatureDisplay}/components/AddFiltersDialog.d.ts +0 -0
  392. /package/{dist/LinearBasicDisplay → esm/LinearFeatureDisplay}/components/SetMaxHeightDialog.d.ts +0 -0
package/esm/index.d.ts CHANGED
@@ -4,32 +4,32 @@ export default class LinearGenomeViewPlugin extends Plugin {
4
4
  name: string;
5
5
  exports: {
6
6
  BaseLinearDisplayComponent: (props: {
7
- model: import("./BaseLinearDisplay").BaseLinearDisplayModel;
7
+ model: import("./index.ts").BaseLinearDisplayModel;
8
8
  children?: React.ReactNode;
9
9
  }) => import("react/jsx-runtime").JSX.Element;
10
- BaseLinearDisplay: import("mobx-state-tree").IModelType<{
11
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
12
- type: import("mobx-state-tree").ISimpleType<string>;
13
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
10
+ BaseLinearDisplay: import("@jbrowse/mobx-state-tree").IModelType<{
11
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
12
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
13
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
14
14
  } & {
15
- heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
15
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
16
16
  } & {
17
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
18
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
17
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
18
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
19
19
  } & {
20
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
21
- key: import("mobx-state-tree").ISimpleType<string>;
22
- region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
23
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
24
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
25
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
20
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
21
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
22
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
23
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
24
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
25
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
26
26
  }, {
27
- stopToken: string | undefined;
27
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
28
28
  filled: boolean;
29
29
  reactElement: React.ReactElement | undefined;
30
30
  features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
31
31
  layout: any;
32
- status: string;
32
+ blockStatusMessage: string;
33
33
  error: unknown;
34
34
  message: string | undefined;
35
35
  maxHeightReached: boolean;
@@ -37,25 +37,32 @@ export default class LinearGenomeViewPlugin extends Plugin {
37
37
  model: {
38
38
  error?: unknown;
39
39
  reload: () => void;
40
- message: React.ReactNode;
41
- filled?: boolean;
42
- status?: string;
40
+ message?: React.ReactNode;
41
+ statusMessage?: string;
43
42
  reactElement?: React.ReactElement;
43
+ isRenderingPending?: boolean;
44
44
  };
45
- }) => import("react/jsx-runtime").JSX.Element | undefined;
45
+ }) => import("react/jsx-runtime").JSX.Element;
46
46
  renderProps: any;
47
+ renderArgs: Record<string, unknown> | undefined;
48
+ isRenderingPending: boolean;
49
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
47
50
  } & {
48
51
  doReload(): void;
49
- afterAttach(): void;
50
- setStatus(message: string): void;
51
- setLoading(newStopToken: string): void;
52
+ setStatusMessage(message: string): void;
53
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
52
54
  setMessage(messageText: string): void;
53
- setRendered(props: import("./BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
55
+ setRendered(props: import("./BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
54
56
  setError(error: unknown): void;
55
57
  reload(): void;
58
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
56
59
  beforeDestroy(): void;
57
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
58
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
60
+ } & {
61
+ readonly statusMessage: any;
62
+ } & {
63
+ afterAttach(): void;
64
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
65
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
59
66
  maxFeatureScreenDensity: {
60
67
  type: string;
61
68
  description: string;
@@ -82,30 +89,32 @@ export default class LinearGenomeViewPlugin extends Plugin {
82
89
  description: string;
83
90
  defaultValue: never[];
84
91
  };
85
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
92
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
93
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
94
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
86
95
  }, {
87
96
  rendererTypeName: string;
88
97
  error: unknown;
89
- message: string | undefined;
98
+ statusMessage: string | undefined;
90
99
  } & {
91
100
  readonly RenderingComponent: React.FC<{
92
101
  model: {
93
102
  id: string;
94
103
  type: string;
95
104
  rpcDriverName: string | undefined;
96
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
105
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
97
106
  rendererTypeName: string;
98
107
  error: unknown;
99
- message: string | undefined;
100
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
101
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
102
- type: import("mobx-state-tree").ISimpleType<string>;
103
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
108
+ statusMessage: string | undefined;
109
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
110
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
111
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
112
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
104
113
  }, {
105
114
  rendererTypeName: string;
106
115
  error: unknown;
107
- message: string | undefined;
108
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
116
+ statusMessage: string | undefined;
117
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
109
118
  onHorizontalScroll?: () => void;
110
119
  blockState?: Record<string, any>;
111
120
  }>;
@@ -114,30 +123,142 @@ export default class LinearGenomeViewPlugin extends Plugin {
114
123
  id: string;
115
124
  type: string;
116
125
  rpcDriverName: string | undefined;
117
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
126
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
118
127
  rendererTypeName: string;
119
128
  error: unknown;
120
- message: string | undefined;
121
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
122
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
123
- type: import("mobx-state-tree").ISimpleType<string>;
124
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
129
+ statusMessage: string | undefined;
130
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
131
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
132
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
133
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
125
134
  }, {
126
135
  rendererTypeName: string;
127
136
  error: unknown;
128
- message: string | undefined;
129
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
137
+ statusMessage: string | undefined;
138
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
130
139
  }> | null;
131
140
  readonly adapterConfig: any;
132
- readonly parentTrack: any;
141
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
142
+ readonly parentDisplay: any;
143
+ readonly effectiveRpcDriverName: any;
144
+ } & {
133
145
  renderProps(): any;
146
+ renderingProps(): {
147
+ displayModel: {
148
+ id: string;
149
+ type: string;
150
+ rpcDriverName: string | undefined;
151
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
152
+ rendererTypeName: string;
153
+ error: unknown;
154
+ statusMessage: string | undefined;
155
+ } & {
156
+ readonly RenderingComponent: React.FC<{
157
+ model: {
158
+ id: string;
159
+ type: string;
160
+ rpcDriverName: string | undefined;
161
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
162
+ rendererTypeName: string;
163
+ error: unknown;
164
+ statusMessage: string | undefined;
165
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
166
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
167
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
168
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
169
+ }, {
170
+ rendererTypeName: string;
171
+ error: unknown;
172
+ statusMessage: string | undefined;
173
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
174
+ onHorizontalScroll?: () => void;
175
+ blockState?: Record<string, any>;
176
+ }>;
177
+ readonly DisplayBlurb: React.FC<{
178
+ model: {
179
+ id: string;
180
+ type: string;
181
+ rpcDriverName: string | undefined;
182
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
183
+ rendererTypeName: string;
184
+ error: unknown;
185
+ statusMessage: string | undefined;
186
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
187
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
188
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
189
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
190
+ }, {
191
+ rendererTypeName: string;
192
+ error: unknown;
193
+ statusMessage: string | undefined;
194
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
195
+ }> | null;
196
+ readonly adapterConfig: any;
197
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
198
+ readonly parentDisplay: any;
199
+ readonly effectiveRpcDriverName: any;
200
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
201
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
202
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
203
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
204
+ }, {
205
+ rendererTypeName: string;
206
+ error: unknown;
207
+ statusMessage: string | undefined;
208
+ } & {
209
+ readonly RenderingComponent: React.FC<{
210
+ model: {
211
+ id: string;
212
+ type: string;
213
+ rpcDriverName: string | undefined;
214
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
215
+ rendererTypeName: string;
216
+ error: unknown;
217
+ statusMessage: string | undefined;
218
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
219
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
220
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
221
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
222
+ }, {
223
+ rendererTypeName: string;
224
+ error: unknown;
225
+ statusMessage: string | undefined;
226
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
227
+ onHorizontalScroll?: () => void;
228
+ blockState?: Record<string, any>;
229
+ }>;
230
+ readonly DisplayBlurb: React.FC<{
231
+ model: {
232
+ id: string;
233
+ type: string;
234
+ rpcDriverName: string | undefined;
235
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
236
+ rendererTypeName: string;
237
+ error: unknown;
238
+ statusMessage: string | undefined;
239
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
240
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
241
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
242
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
243
+ }, {
244
+ rendererTypeName: string;
245
+ error: unknown;
246
+ statusMessage: string | undefined;
247
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
248
+ }> | null;
249
+ readonly adapterConfig: any;
250
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
251
+ readonly parentDisplay: any;
252
+ readonly effectiveRpcDriverName: any;
253
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
254
+ };
134
255
  readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
135
256
  readonly DisplayMessageComponent: undefined | React.FC<any>;
136
257
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
137
258
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
138
259
  regionCannotBeRendered(): null;
139
260
  } & {
140
- setMessage(arg?: string): void;
261
+ setStatusMessage(arg?: string): void;
141
262
  setError(error?: unknown): void;
142
263
  setRpcDriverName(rpcDriverName: string): void;
143
264
  reload(): void;
@@ -172,11 +293,13 @@ export default class LinearGenomeViewPlugin extends Plugin {
172
293
  readonly regionTooLarge: boolean;
173
294
  readonly regionTooLargeReason: string;
174
295
  } & {
175
- readonly statsReadyAndRegionNotTooLarge: boolean;
296
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
176
297
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
177
298
  regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
178
299
  } & {
300
+ mouseoverExtraInformation: string | undefined;
179
301
  featureIdUnderMouse: undefined | string;
302
+ subfeatureIdUnderMouse: undefined | string;
180
303
  contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
181
304
  } & {
182
305
  readonly DisplayMessageComponent: undefined | React.FC<any>;
@@ -185,14 +308,23 @@ export default class LinearGenomeViewPlugin extends Plugin {
185
308
  } & {
186
309
  readonly renderDelay: number;
187
310
  readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
311
+ legendItems(_theme?: import("@mui/material").Theme): import("./index.ts").LegendItem[];
312
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
188
313
  readonly selectedFeatureId: string | undefined;
189
- copyInfoToClipboard(feature: import("@jbrowse/core/util").Feature): void;
314
+ readonly featureWidgetType: {
315
+ type: string;
316
+ id: string;
317
+ };
190
318
  } & {
319
+ readonly showTooltipsEnabled: boolean;
191
320
  readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
192
321
  readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
322
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
323
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("./BaseLinearDisplay/types.ts").LayoutRecord>;
193
324
  getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
194
- getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
195
- searchFeatureByID(id: string): [number, number, number, number] | undefined;
325
+ getFeatureByID(blockKey: string, id: string): import("./BaseLinearDisplay/types.ts").LayoutRecord | undefined;
326
+ searchFeatureByID(id: string): import("./BaseLinearDisplay/types.ts").LayoutRecord | undefined;
327
+ readonly floatingLabelData: Map<string, import("./BaseLinearDisplay/components/util.ts").FeatureLabelData>;
196
328
  } & {
197
329
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
198
330
  deleteBlock(key: string): void;
@@ -200,39 +332,773 @@ export default class LinearGenomeViewPlugin extends Plugin {
200
332
  navToFeature(feature: import("@jbrowse/core/util").Feature): void;
201
333
  clearFeatureSelection(): void;
202
334
  setFeatureIdUnderMouse(feature?: string): void;
335
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
203
336
  setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
337
+ setMouseoverExtraInformation(extra?: string): void;
338
+ setShowLegend(s: boolean): void;
339
+ setShowTooltips(arg: boolean): void;
204
340
  } & {
205
341
  reload(): Promise<void>;
342
+ } & {
343
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
344
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
206
345
  } & {
207
346
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
208
347
  contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
348
+ renderingProps(): {
349
+ displayModel: {
350
+ id: string;
351
+ type: string;
352
+ rpcDriverName: string | undefined;
353
+ heightPreConfig: number | undefined;
354
+ userBpPerPxLimit: number | undefined;
355
+ userByteSizeLimit: number | undefined;
356
+ blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
357
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
358
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
359
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
360
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
361
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
362
+ }, {
363
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
364
+ filled: boolean;
365
+ reactElement: React.ReactElement | undefined;
366
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
367
+ layout: any;
368
+ blockStatusMessage: string;
369
+ error: unknown;
370
+ message: string | undefined;
371
+ maxHeightReached: boolean;
372
+ ReactComponent: ({ model, }: {
373
+ model: {
374
+ error?: unknown;
375
+ reload: () => void;
376
+ message?: React.ReactNode;
377
+ statusMessage?: string;
378
+ reactElement?: React.ReactElement;
379
+ isRenderingPending?: boolean;
380
+ };
381
+ }) => import("react/jsx-runtime").JSX.Element;
382
+ renderProps: any;
383
+ renderArgs: Record<string, unknown> | undefined;
384
+ isRenderingPending: boolean;
385
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
386
+ } & {
387
+ doReload(): void;
388
+ setStatusMessage(message: string): void;
389
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
390
+ setMessage(messageText: string): void;
391
+ setRendered(props: import("./BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
392
+ setError(error: unknown): void;
393
+ reload(): void;
394
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
395
+ beforeDestroy(): void;
396
+ } & {
397
+ readonly statusMessage: any;
398
+ } & {
399
+ afterAttach(): void;
400
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
401
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
402
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
403
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
404
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
405
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
406
+ }, {
407
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
408
+ filled: boolean;
409
+ reactElement: React.ReactElement | undefined;
410
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
411
+ layout: any;
412
+ blockStatusMessage: string;
413
+ error: unknown;
414
+ message: string | undefined;
415
+ maxHeightReached: boolean;
416
+ ReactComponent: ({ model, }: {
417
+ model: {
418
+ error?: unknown;
419
+ reload: () => void;
420
+ message?: React.ReactNode;
421
+ statusMessage?: string;
422
+ reactElement?: React.ReactElement;
423
+ isRenderingPending?: boolean;
424
+ };
425
+ }) => import("react/jsx-runtime").JSX.Element;
426
+ renderProps: any;
427
+ renderArgs: Record<string, unknown> | undefined;
428
+ isRenderingPending: boolean;
429
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
430
+ } & {
431
+ doReload(): void;
432
+ setStatusMessage(message: string): void;
433
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
434
+ setMessage(messageText: string): void;
435
+ setRendered(props: import("./BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
436
+ setError(error: unknown): void;
437
+ reload(): void;
438
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
439
+ beforeDestroy(): void;
440
+ } & {
441
+ readonly statusMessage: any;
442
+ } & {
443
+ afterAttach(): void;
444
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
445
+ configuration: {
446
+ [x: string]: any;
447
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
448
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
449
+ [x: string]: any;
450
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
451
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
452
+ [x: string]: any;
453
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
454
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
455
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
456
+ maxFeatureScreenDensity: {
457
+ type: string;
458
+ description: string;
459
+ defaultValue: number;
460
+ };
461
+ fetchSizeLimit: {
462
+ type: string;
463
+ defaultValue: number;
464
+ description: string;
465
+ };
466
+ height: {
467
+ type: string;
468
+ defaultValue: number;
469
+ description: string;
470
+ };
471
+ mouseover: {
472
+ type: string;
473
+ description: string;
474
+ defaultValue: string;
475
+ contextVariable: string[];
476
+ };
477
+ jexlFilters: {
478
+ type: string;
479
+ description: string;
480
+ defaultValue: never[];
481
+ };
482
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
483
+ showLegend: boolean | undefined;
484
+ showTooltips: boolean | undefined;
485
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
486
+ rendererTypeName: string;
487
+ error: unknown;
488
+ statusMessage: string | undefined;
489
+ } & {
490
+ readonly RenderingComponent: React.FC<{
491
+ model: {
492
+ id: string;
493
+ type: string;
494
+ rpcDriverName: string | undefined;
495
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
496
+ rendererTypeName: string;
497
+ error: unknown;
498
+ statusMessage: string | undefined;
499
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
500
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
501
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
502
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
503
+ }, {
504
+ rendererTypeName: string;
505
+ error: unknown;
506
+ statusMessage: string | undefined;
507
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
508
+ onHorizontalScroll?: () => void;
509
+ blockState?: Record<string, any>;
510
+ }>;
511
+ readonly DisplayBlurb: React.FC<{
512
+ model: {
513
+ id: string;
514
+ type: string;
515
+ rpcDriverName: string | undefined;
516
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
517
+ rendererTypeName: string;
518
+ error: unknown;
519
+ statusMessage: string | undefined;
520
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
521
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
522
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
523
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
524
+ }, {
525
+ rendererTypeName: string;
526
+ error: unknown;
527
+ statusMessage: string | undefined;
528
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
529
+ }> | null;
530
+ readonly adapterConfig: any;
531
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
532
+ readonly parentDisplay: any;
533
+ readonly effectiveRpcDriverName: any;
534
+ } & {
535
+ renderProps(): any;
536
+ renderingProps(): {
537
+ displayModel: {
538
+ id: string;
539
+ type: string;
540
+ rpcDriverName: string | undefined;
541
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
542
+ rendererTypeName: string;
543
+ error: unknown;
544
+ statusMessage: string | undefined;
545
+ } & {
546
+ readonly RenderingComponent: React.FC<{
547
+ model: {
548
+ id: string;
549
+ type: string;
550
+ rpcDriverName: string | undefined;
551
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
552
+ rendererTypeName: string;
553
+ error: unknown;
554
+ statusMessage: string | undefined;
555
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
556
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
557
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
558
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
559
+ }, {
560
+ rendererTypeName: string;
561
+ error: unknown;
562
+ statusMessage: string | undefined;
563
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
564
+ onHorizontalScroll?: () => void;
565
+ blockState?: Record<string, any>;
566
+ }>;
567
+ readonly DisplayBlurb: React.FC<{
568
+ model: {
569
+ id: string;
570
+ type: string;
571
+ rpcDriverName: string | undefined;
572
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
573
+ rendererTypeName: string;
574
+ error: unknown;
575
+ statusMessage: string | undefined;
576
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
577
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
578
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
579
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
580
+ }, {
581
+ rendererTypeName: string;
582
+ error: unknown;
583
+ statusMessage: string | undefined;
584
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
585
+ }> | null;
586
+ readonly adapterConfig: any;
587
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
588
+ readonly parentDisplay: any;
589
+ readonly effectiveRpcDriverName: any;
590
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
591
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
592
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
593
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
594
+ }, {
595
+ rendererTypeName: string;
596
+ error: unknown;
597
+ statusMessage: string | undefined;
598
+ } & {
599
+ readonly RenderingComponent: React.FC<{
600
+ model: {
601
+ id: string;
602
+ type: string;
603
+ rpcDriverName: string | undefined;
604
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
605
+ rendererTypeName: string;
606
+ error: unknown;
607
+ statusMessage: string | undefined;
608
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
609
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
610
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
611
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
612
+ }, {
613
+ rendererTypeName: string;
614
+ error: unknown;
615
+ statusMessage: string | undefined;
616
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
617
+ onHorizontalScroll?: () => void;
618
+ blockState?: Record<string, any>;
619
+ }>;
620
+ readonly DisplayBlurb: React.FC<{
621
+ model: {
622
+ id: string;
623
+ type: string;
624
+ rpcDriverName: string | undefined;
625
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
626
+ rendererTypeName: string;
627
+ error: unknown;
628
+ statusMessage: string | undefined;
629
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
630
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
631
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
632
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
633
+ }, {
634
+ rendererTypeName: string;
635
+ error: unknown;
636
+ statusMessage: string | undefined;
637
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
638
+ }> | null;
639
+ readonly adapterConfig: any;
640
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
641
+ readonly parentDisplay: any;
642
+ readonly effectiveRpcDriverName: any;
643
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
644
+ };
645
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
646
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
647
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
648
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
649
+ regionCannotBeRendered(): null;
650
+ } & {
651
+ setStatusMessage(arg?: string): void;
652
+ setError(error?: unknown): void;
653
+ setRpcDriverName(rpcDriverName: string): void;
654
+ reload(): void;
655
+ } & {
656
+ scrollTop: number;
657
+ } & {
658
+ readonly height: number;
659
+ } & {
660
+ setScrollTop(scrollTop: number): void;
661
+ setHeight(displayHeight: number): number;
662
+ resizeHeight(distance: number): number;
663
+ } & {
664
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
665
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
666
+ currStatsBpPerPx: number;
667
+ } & {
668
+ readonly currentBytesRequested: number;
669
+ readonly currentFeatureScreenDensity: number;
670
+ readonly maxFeatureScreenDensity: any;
671
+ readonly featureDensityStatsReady: boolean;
672
+ readonly maxAllowableBytes: number;
673
+ } & {
674
+ afterAttach(): void;
675
+ } & {
676
+ setCurrStatsBpPerPx(n: number): void;
677
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
678
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
679
+ setFeatureDensityStatsP(arg: any): void;
680
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
681
+ clearFeatureDensityStats(): void;
682
+ } & {
683
+ readonly regionTooLarge: boolean;
684
+ readonly regionTooLargeReason: string;
685
+ } & {
686
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
687
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
688
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
689
+ } & {
690
+ mouseoverExtraInformation: string | undefined;
691
+ featureIdUnderMouse: undefined | string;
692
+ subfeatureIdUnderMouse: undefined | string;
693
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
694
+ } & {
695
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
696
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
697
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
698
+ } & {
699
+ readonly renderDelay: number;
700
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
701
+ legendItems(_theme?: import("@mui/material").Theme): import("./index.ts").LegendItem[];
702
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
703
+ readonly selectedFeatureId: string | undefined;
704
+ readonly featureWidgetType: {
705
+ type: string;
706
+ id: string;
707
+ };
708
+ } & {
709
+ readonly showTooltipsEnabled: boolean;
710
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
711
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
712
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
713
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("./BaseLinearDisplay/types.ts").LayoutRecord>;
714
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
715
+ getFeatureByID(blockKey: string, id: string): import("./BaseLinearDisplay/types.ts").LayoutRecord | undefined;
716
+ searchFeatureByID(id: string): import("./BaseLinearDisplay/types.ts").LayoutRecord | undefined;
717
+ readonly floatingLabelData: Map<string, import("./BaseLinearDisplay/components/util.ts").FeatureLabelData>;
718
+ } & {
719
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
720
+ deleteBlock(key: string): void;
721
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
722
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
723
+ clearFeatureSelection(): void;
724
+ setFeatureIdUnderMouse(feature?: string): void;
725
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
726
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
727
+ setMouseoverExtraInformation(extra?: string): void;
728
+ setShowLegend(s: boolean): void;
729
+ setShowTooltips(arg: boolean): void;
730
+ } & {
731
+ reload(): Promise<void>;
732
+ } & {
733
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
734
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
735
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
736
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
737
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
738
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
739
+ } & {
740
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
741
+ } & {
742
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
743
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
744
+ } & {
745
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
746
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
747
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
748
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
749
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
750
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
751
+ }, {
752
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
753
+ filled: boolean;
754
+ reactElement: React.ReactElement | undefined;
755
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
756
+ layout: any;
757
+ blockStatusMessage: string;
758
+ error: unknown;
759
+ message: string | undefined;
760
+ maxHeightReached: boolean;
761
+ ReactComponent: ({ model, }: {
762
+ model: {
763
+ error?: unknown;
764
+ reload: () => void;
765
+ message?: React.ReactNode;
766
+ statusMessage?: string;
767
+ reactElement?: React.ReactElement;
768
+ isRenderingPending?: boolean;
769
+ };
770
+ }) => import("react/jsx-runtime").JSX.Element;
771
+ renderProps: any;
772
+ renderArgs: Record<string, unknown> | undefined;
773
+ isRenderingPending: boolean;
774
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
775
+ } & {
776
+ doReload(): void;
777
+ setStatusMessage(message: string): void;
778
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
779
+ setMessage(messageText: string): void;
780
+ setRendered(props: import("./BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
781
+ setError(error: unknown): void;
782
+ reload(): void;
783
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
784
+ beforeDestroy(): void;
785
+ } & {
786
+ readonly statusMessage: any;
787
+ } & {
788
+ afterAttach(): void;
789
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
790
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
791
+ maxFeatureScreenDensity: {
792
+ type: string;
793
+ description: string;
794
+ defaultValue: number;
795
+ };
796
+ fetchSizeLimit: {
797
+ type: string;
798
+ defaultValue: number;
799
+ description: string;
800
+ };
801
+ height: {
802
+ type: string;
803
+ defaultValue: number;
804
+ description: string;
805
+ };
806
+ mouseover: {
807
+ type: string;
808
+ description: string;
809
+ defaultValue: string;
810
+ contextVariable: string[];
811
+ };
812
+ jexlFilters: {
813
+ type: string;
814
+ description: string;
815
+ defaultValue: never[];
816
+ };
817
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
818
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
819
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
820
+ }, {
821
+ rendererTypeName: string;
822
+ error: unknown;
823
+ statusMessage: string | undefined;
824
+ } & {
825
+ readonly RenderingComponent: React.FC<{
826
+ model: {
827
+ id: string;
828
+ type: string;
829
+ rpcDriverName: string | undefined;
830
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
831
+ rendererTypeName: string;
832
+ error: unknown;
833
+ statusMessage: string | undefined;
834
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
835
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
836
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
837
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
838
+ }, {
839
+ rendererTypeName: string;
840
+ error: unknown;
841
+ statusMessage: string | undefined;
842
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
843
+ onHorizontalScroll?: () => void;
844
+ blockState?: Record<string, any>;
845
+ }>;
846
+ readonly DisplayBlurb: React.FC<{
847
+ model: {
848
+ id: string;
849
+ type: string;
850
+ rpcDriverName: string | undefined;
851
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
852
+ rendererTypeName: string;
853
+ error: unknown;
854
+ statusMessage: string | undefined;
855
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
856
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
857
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
858
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
859
+ }, {
860
+ rendererTypeName: string;
861
+ error: unknown;
862
+ statusMessage: string | undefined;
863
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
864
+ }> | null;
865
+ readonly adapterConfig: any;
866
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
867
+ readonly parentDisplay: any;
868
+ readonly effectiveRpcDriverName: any;
869
+ } & {
870
+ renderProps(): any;
871
+ renderingProps(): {
872
+ displayModel: {
873
+ id: string;
874
+ type: string;
875
+ rpcDriverName: string | undefined;
876
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
877
+ rendererTypeName: string;
878
+ error: unknown;
879
+ statusMessage: string | undefined;
880
+ } & {
881
+ readonly RenderingComponent: React.FC<{
882
+ model: {
883
+ id: string;
884
+ type: string;
885
+ rpcDriverName: string | undefined;
886
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
887
+ rendererTypeName: string;
888
+ error: unknown;
889
+ statusMessage: string | undefined;
890
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
891
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
892
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
893
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
894
+ }, {
895
+ rendererTypeName: string;
896
+ error: unknown;
897
+ statusMessage: string | undefined;
898
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
899
+ onHorizontalScroll?: () => void;
900
+ blockState?: Record<string, any>;
901
+ }>;
902
+ readonly DisplayBlurb: React.FC<{
903
+ model: {
904
+ id: string;
905
+ type: string;
906
+ rpcDriverName: string | undefined;
907
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
908
+ rendererTypeName: string;
909
+ error: unknown;
910
+ statusMessage: string | undefined;
911
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
912
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
913
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
914
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
915
+ }, {
916
+ rendererTypeName: string;
917
+ error: unknown;
918
+ statusMessage: string | undefined;
919
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
920
+ }> | null;
921
+ readonly adapterConfig: any;
922
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
923
+ readonly parentDisplay: any;
924
+ readonly effectiveRpcDriverName: any;
925
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
926
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
927
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
928
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
929
+ }, {
930
+ rendererTypeName: string;
931
+ error: unknown;
932
+ statusMessage: string | undefined;
933
+ } & {
934
+ readonly RenderingComponent: React.FC<{
935
+ model: {
936
+ id: string;
937
+ type: string;
938
+ rpcDriverName: string | undefined;
939
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
940
+ rendererTypeName: string;
941
+ error: unknown;
942
+ statusMessage: string | undefined;
943
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
944
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
945
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
946
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
947
+ }, {
948
+ rendererTypeName: string;
949
+ error: unknown;
950
+ statusMessage: string | undefined;
951
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
952
+ onHorizontalScroll?: () => void;
953
+ blockState?: Record<string, any>;
954
+ }>;
955
+ readonly DisplayBlurb: React.FC<{
956
+ model: {
957
+ id: string;
958
+ type: string;
959
+ rpcDriverName: string | undefined;
960
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
961
+ rendererTypeName: string;
962
+ error: unknown;
963
+ statusMessage: string | undefined;
964
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
965
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
966
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
967
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
968
+ }, {
969
+ rendererTypeName: string;
970
+ error: unknown;
971
+ statusMessage: string | undefined;
972
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
973
+ }> | null;
974
+ readonly adapterConfig: any;
975
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
976
+ readonly parentDisplay: any;
977
+ readonly effectiveRpcDriverName: any;
978
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
979
+ };
980
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
981
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
982
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
983
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
984
+ regionCannotBeRendered(): null;
985
+ } & {
986
+ setStatusMessage(arg?: string): void;
987
+ setError(error?: unknown): void;
988
+ setRpcDriverName(rpcDriverName: string): void;
989
+ reload(): void;
990
+ } & {
991
+ scrollTop: number;
992
+ } & {
993
+ readonly height: number;
994
+ } & {
995
+ setScrollTop(scrollTop: number): void;
996
+ setHeight(displayHeight: number): number;
997
+ resizeHeight(distance: number): number;
998
+ } & {
999
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1000
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
1001
+ currStatsBpPerPx: number;
1002
+ } & {
1003
+ readonly currentBytesRequested: number;
1004
+ readonly currentFeatureScreenDensity: number;
1005
+ readonly maxFeatureScreenDensity: any;
1006
+ readonly featureDensityStatsReady: boolean;
1007
+ readonly maxAllowableBytes: number;
1008
+ } & {
1009
+ afterAttach(): void;
1010
+ } & {
1011
+ setCurrStatsBpPerPx(n: number): void;
1012
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1013
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1014
+ setFeatureDensityStatsP(arg: any): void;
1015
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1016
+ clearFeatureDensityStats(): void;
1017
+ } & {
1018
+ readonly regionTooLarge: boolean;
1019
+ readonly regionTooLargeReason: string;
1020
+ } & {
1021
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
1022
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
1023
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
1024
+ } & {
1025
+ mouseoverExtraInformation: string | undefined;
1026
+ featureIdUnderMouse: undefined | string;
1027
+ subfeatureIdUnderMouse: undefined | string;
1028
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
1029
+ } & {
1030
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
1031
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
1032
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
1033
+ } & {
1034
+ readonly renderDelay: number;
1035
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
1036
+ legendItems(_theme?: import("@mui/material").Theme): import("./index.ts").LegendItem[];
1037
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
1038
+ readonly selectedFeatureId: string | undefined;
1039
+ readonly featureWidgetType: {
1040
+ type: string;
1041
+ id: string;
1042
+ };
1043
+ } & {
1044
+ readonly showTooltipsEnabled: boolean;
1045
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
1046
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
1047
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
1048
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("./BaseLinearDisplay/types.ts").LayoutRecord>;
1049
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
1050
+ getFeatureByID(blockKey: string, id: string): import("./BaseLinearDisplay/types.ts").LayoutRecord | undefined;
1051
+ searchFeatureByID(id: string): import("./BaseLinearDisplay/types.ts").LayoutRecord | undefined;
1052
+ readonly floatingLabelData: Map<string, import("./BaseLinearDisplay/components/util.ts").FeatureLabelData>;
1053
+ } & {
1054
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
1055
+ deleteBlock(key: string): void;
1056
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
1057
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
1058
+ clearFeatureSelection(): void;
1059
+ setFeatureIdUnderMouse(feature?: string): void;
1060
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
1061
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
1062
+ setMouseoverExtraInformation(extra?: string): void;
1063
+ setShowLegend(s: boolean): void;
1064
+ setShowTooltips(arg: boolean): void;
1065
+ } & {
1066
+ reload(): Promise<void>;
1067
+ } & {
1068
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1069
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1070
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1071
+ onMouseMove(_: unknown, featureId?: string): void;
1072
+ onMouseLeave(_: unknown): void;
1073
+ onContextMenu(_: unknown): void;
1074
+ };
209
1075
  renderProps(): any;
210
1076
  } & {
211
- renderSvg(opts: import("./BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
1077
+ renderSvg(opts: import("./index.ts").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
212
1078
  afterAttach(): void;
213
- }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
214
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
215
- type: import("mobx-state-tree").ISimpleType<string>;
216
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
1079
+ }, import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
1080
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1081
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1082
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
217
1083
  } & {
218
- heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
1084
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
219
1085
  } & {
220
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
221
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
1086
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1087
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
222
1088
  } & {
223
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
224
- key: import("mobx-state-tree").ISimpleType<string>;
225
- region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
226
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
227
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
228
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1089
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
1090
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1091
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1092
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1093
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1094
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
229
1095
  }, {
230
- stopToken: string | undefined;
1096
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
231
1097
  filled: boolean;
232
1098
  reactElement: React.ReactElement | undefined;
233
1099
  features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
234
1100
  layout: any;
235
- status: string;
1101
+ blockStatusMessage: string;
236
1102
  error: unknown;
237
1103
  message: string | undefined;
238
1104
  maxHeightReached: boolean;
@@ -240,25 +1106,32 @@ export default class LinearGenomeViewPlugin extends Plugin {
240
1106
  model: {
241
1107
  error?: unknown;
242
1108
  reload: () => void;
243
- message: React.ReactNode;
244
- filled?: boolean;
245
- status?: string;
1109
+ message?: React.ReactNode;
1110
+ statusMessage?: string;
246
1111
  reactElement?: React.ReactElement;
1112
+ isRenderingPending?: boolean;
247
1113
  };
248
- }) => import("react/jsx-runtime").JSX.Element | undefined;
1114
+ }) => import("react/jsx-runtime").JSX.Element;
249
1115
  renderProps: any;
1116
+ renderArgs: Record<string, unknown> | undefined;
1117
+ isRenderingPending: boolean;
1118
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
250
1119
  } & {
251
1120
  doReload(): void;
252
- afterAttach(): void;
253
- setStatus(message: string): void;
254
- setLoading(newStopToken: string): void;
1121
+ setStatusMessage(message: string): void;
1122
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
255
1123
  setMessage(messageText: string): void;
256
- setRendered(props: import("./BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
1124
+ setRendered(props: import("./BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
257
1125
  setError(error: unknown): void;
258
1126
  reload(): void;
1127
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
259
1128
  beforeDestroy(): void;
260
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
261
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
1129
+ } & {
1130
+ readonly statusMessage: any;
1131
+ } & {
1132
+ afterAttach(): void;
1133
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1134
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
262
1135
  maxFeatureScreenDensity: {
263
1136
  type: string;
264
1137
  description: string;
@@ -285,17 +1158,21 @@ export default class LinearGenomeViewPlugin extends Plugin {
285
1158
  description: string;
286
1159
  defaultValue: never[];
287
1160
  };
288
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
1161
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
1162
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1163
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
289
1164
  }>>, {
290
- type: string;
291
1165
  id: string;
292
- configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
1166
+ type: string;
1167
+ configuration: import("@jbrowse/mobx-state-tree").ModelSnapshotType<Record<string, any>>;
293
1168
  rpcDriverName: string | undefined;
294
1169
  heightPreConfig: number | undefined;
295
1170
  userBpPerPxLimit: number | undefined;
296
1171
  userByteSizeLimit: number | undefined;
1172
+ showLegend: boolean | undefined;
1173
+ showTooltips: boolean | undefined;
297
1174
  }>;
298
- baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
1175
+ baseLinearDisplayConfigSchema: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
299
1176
  maxFeatureScreenDensity: {
300
1177
  type: string;
301
1178
  description: string;
@@ -322,32 +1199,36 @@ export default class LinearGenomeViewPlugin extends Plugin {
322
1199
  description: string;
323
1200
  defaultValue: never[];
324
1201
  };
325
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
1202
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
326
1203
  SearchBox: ({ model, showHelp, }: {
327
1204
  showHelp?: boolean;
328
- model: import("./LinearGenomeView").LinearGenomeViewModel;
1205
+ model: import("./index.ts").LinearGenomeViewModel;
329
1206
  }) => import("react/jsx-runtime").JSX.Element;
330
1207
  ZoomControls: ({ model, }: {
331
- model: import("./LinearGenomeView").LinearGenomeViewModel;
1208
+ model: import("./index.ts").LinearGenomeViewModel;
332
1209
  }) => import("react/jsx-runtime").JSX.Element;
333
1210
  LinearGenomeView: ({ model, }: {
334
- model: import("./LinearGenomeView").LinearGenomeViewModel;
1211
+ model: import("./index.ts").LinearGenomeViewModel;
335
1212
  }) => import("react/jsx-runtime").JSX.Element;
336
1213
  };
337
- configurationSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
1214
+ configurationSchema: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
338
1215
  trackLabels: {
339
1216
  type: string;
340
1217
  defaultValue: string;
341
- model: import("mobx-state-tree").ISimpleType<string>;
1218
+ model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
342
1219
  };
343
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
1220
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
344
1221
  install(pluginManager: PluginManager): void;
345
1222
  configure(pluginManager: PluginManager): void;
346
1223
  }
347
- export type { BaseLinearDisplayModel, BlockModel, ExportSvgDisplayOptions, } from './BaseLinearDisplay';
348
- export { configSchemaFactory as linearBareDisplayConfigSchemaFactory, stateModelFactory as linearBareDisplayStateModelFactory, } from './LinearBareDisplay';
349
- export { BaseLinearDisplay, BaseLinearDisplayComponent, BlockMsg, FeatureDensityMixin, TooLargeMessage, TrackHeightMixin, baseLinearDisplayConfigSchema, } from './BaseLinearDisplay';
350
- export { type LinearGenomeViewModel, type LinearGenomeViewStateModel, RefNameAutocomplete, SearchBox, } from './LinearGenomeView';
351
- export { SVGRuler, SVGTracks, renderToSvg, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
352
- export { totalHeight } from './LinearGenomeView/svgcomponents/util';
353
- export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';
1224
+ export type { BaseLinearDisplayModel, BlockModel, ExportSvgDisplayOptions, FloatingLabelData, LayoutFeatureMetadata, LegendItem, } from './BaseLinearDisplay/index.ts';
1225
+ export { configSchemaFactory as linearBareDisplayConfigSchemaFactory, stateModelFactory as linearBareDisplayStateModelFactory, } from './LinearBareDisplay/index.ts';
1226
+ export { BaseLinearDisplay, BaseLinearDisplayComponent, BlockMsg, FeatureDensityMixin, FloatingLegend, NonBlockCanvasDisplayComponent, NonBlockCanvasDisplayMixin, SVGLegend, TooLargeMessage, TrackHeightMixin, baseLinearDisplayConfigSchema, calculateSvgLegendWidth, createSubfeatureLabelMetadata, drawCanvasImageData, } from './BaseLinearDisplay/index.ts';
1227
+ export type { NonBlockCanvasDisplayMixinType, NonBlockCanvasDisplayModel, } from './BaseLinearDisplay/index.ts';
1228
+ export { type LinearGenomeViewModel, type LinearGenomeViewStateModel, RefNameAutocomplete, SearchBox, } from './LinearGenomeView/index.ts';
1229
+ export { SVGGridlines, SVGRuler, SVGTracks, renderToSvg, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView.tsx';
1230
+ export { totalHeight } from './LinearGenomeView/svgcomponents/util.ts';
1231
+ export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay/index.ts';
1232
+ export { configSchema as linearFeatureDisplayConfigSchemaFactory, modelFactory as linearFeatureDisplayModelFactory, } from './LinearFeatureDisplay/index.ts';
1233
+ export type { LinearFeatureDisplayModel, LinearFeatureDisplayStateModel, } from './LinearFeatureDisplay/index.ts';
1234
+ export { default as LinearBasicDisplayComponent } from './LinearBasicDisplay/components/LinearBasicDisplayComponent.tsx';