@jbrowse/plugin-linear-genome-view 3.6.5 → 4.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/BaseLinearDisplay/SVGLegend.d.ts +6 -0
- package/esm/BaseLinearDisplay/SVGLegend.js +17 -0
- package/esm/BaseLinearDisplay/calculateSvgLegendWidth.d.ts +2 -0
- package/esm/BaseLinearDisplay/calculateSvgLegendWidth.js +11 -0
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +3 -3
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js +13 -24
- package/esm/BaseLinearDisplay/components/Block.js +2 -2
- package/esm/BaseLinearDisplay/components/BlockErrorMessage.js +2 -2
- package/esm/BaseLinearDisplay/components/BlockMsg.js +11 -2
- package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/CollapseIntronsDialog.d.ts +9 -0
- package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/CollapseIntronsDialog.js +42 -0
- package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/TranscriptTable.d.ts +11 -0
- package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/TranscriptTable.js +40 -0
- package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/util.d.ts +19 -0
- package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/util.js +45 -0
- package/esm/BaseLinearDisplay/components/FloatingLabels.d.ts +5 -0
- package/esm/BaseLinearDisplay/components/FloatingLabels.js +89 -0
- package/esm/BaseLinearDisplay/components/FloatingLegend.d.ts +8 -0
- package/esm/BaseLinearDisplay/components/FloatingLegend.js +43 -0
- package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +1 -5
- package/esm/BaseLinearDisplay/components/LinearBlocks.js +5 -42
- package/esm/BaseLinearDisplay/components/LoadingOverlay.d.ts +4 -0
- package/esm/BaseLinearDisplay/components/LoadingOverlay.js +49 -0
- package/esm/BaseLinearDisplay/components/MaxHeightReachedIndicator.d.ts +4 -0
- package/esm/BaseLinearDisplay/components/MaxHeightReachedIndicator.js +26 -0
- package/esm/BaseLinearDisplay/components/MenuPage.d.ts +8 -0
- package/esm/BaseLinearDisplay/components/MenuPage.js +24 -0
- package/esm/BaseLinearDisplay/components/NonBlockCanvasDisplayComponent.d.ts +19 -0
- package/esm/BaseLinearDisplay/components/NonBlockCanvasDisplayComponent.js +48 -0
- package/esm/BaseLinearDisplay/components/RenderedBlocks.d.ts +12 -0
- package/esm/BaseLinearDisplay/components/RenderedBlocks.js +22 -0
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +5 -8
- package/esm/BaseLinearDisplay/components/TooLargeMessage.js +3 -3
- package/esm/BaseLinearDisplay/components/Tooltip.d.ts +2 -0
- package/esm/BaseLinearDisplay/components/Tooltip.js +10 -7
- package/esm/BaseLinearDisplay/components/types.d.ts +1 -0
- package/esm/BaseLinearDisplay/components/types.js +1 -0
- package/esm/BaseLinearDisplay/components/util.d.ts +21 -0
- package/esm/BaseLinearDisplay/components/util.js +116 -0
- package/esm/BaseLinearDisplay/index.d.ts +17 -8
- package/esm/BaseLinearDisplay/index.js +13 -6
- package/esm/BaseLinearDisplay/model.d.ts +1177 -0
- package/esm/BaseLinearDisplay/model.js +424 -0
- package/esm/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +5 -5
- package/esm/BaseLinearDisplay/models/FeatureDensityMixin.js +11 -14
- package/esm/BaseLinearDisplay/models/NonBlockCanvasDisplayMixin.d.ts +21 -0
- package/esm/BaseLinearDisplay/models/NonBlockCanvasDisplayMixin.js +46 -0
- package/esm/BaseLinearDisplay/models/TrackHeightMixin.d.ts +3 -3
- package/esm/BaseLinearDisplay/models/TrackHeightMixin.js +2 -3
- package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +1 -1
- package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.js +2 -3
- package/esm/BaseLinearDisplay/models/calculateLabelPositions.d.ts +24 -0
- package/esm/BaseLinearDisplay/models/calculateLabelPositions.js +60 -0
- package/esm/BaseLinearDisplay/models/configSchema.d.ts +2 -2
- package/esm/BaseLinearDisplay/models/configSchema.js +3 -3
- package/esm/BaseLinearDisplay/models/renderSvg.d.ts +3 -7
- package/esm/BaseLinearDisplay/models/renderSvg.js +22 -11
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +37 -19
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +151 -135
- package/esm/BaseLinearDisplay/models/util.d.ts +4 -4
- package/esm/BaseLinearDisplay/models/util.js +16 -13
- package/esm/BaseLinearDisplay/renderSvg.d.ts +3 -0
- package/esm/BaseLinearDisplay/renderSvg.js +59 -0
- package/esm/BaseLinearDisplay/types.d.ts +47 -0
- package/esm/BaseLinearDisplay/types.js +3 -0
- package/esm/BaseLinearDisplay/util.d.ts +15 -0
- package/esm/BaseLinearDisplay/util.js +61 -0
- package/esm/BasicTrack/configSchema.d.ts +16 -11
- package/esm/BasicTrack/index.js +1 -1
- package/esm/FeatureTrack/configSchema.d.ts +16 -11
- package/esm/FeatureTrack/index.js +1 -1
- package/esm/LaunchLinearGenomeView/index.js +12 -62
- package/esm/LinearBareDisplay/configSchema.d.ts +4 -4
- package/esm/LinearBareDisplay/configSchema.js +1 -1
- package/esm/LinearBareDisplay/index.d.ts +2 -2
- package/esm/LinearBareDisplay/index.js +5 -5
- package/esm/LinearBareDisplay/model.d.ts +959 -92
- package/esm/LinearBareDisplay/model.js +3 -6
- package/esm/LinearBasicDisplay/components/LinearBasicDisplayComponent.d.ts +5 -0
- package/esm/LinearBasicDisplay/components/LinearBasicDisplayComponent.js +9 -0
- package/esm/LinearBasicDisplay/configSchema.d.ts +4 -4
- package/esm/LinearBasicDisplay/configSchema.js +1 -1
- package/esm/LinearBasicDisplay/index.d.ts +2 -2
- package/esm/LinearBasicDisplay/index.js +6 -6
- package/esm/LinearBasicDisplay/model.d.ts +1134 -122
- package/esm/LinearBasicDisplay/model.js +116 -116
- package/esm/{LinearBasicDisplay → LinearFeatureDisplay}/components/AddFiltersDialog.js +2 -2
- package/esm/{LinearBasicDisplay → LinearFeatureDisplay}/components/SetMaxHeightDialog.js +3 -3
- package/{dist/LinearBasicDisplay → esm/LinearFeatureDisplay}/configSchema.d.ts +4 -4
- package/esm/LinearFeatureDisplay/configSchema.js +11 -0
- package/esm/LinearFeatureDisplay/index.d.ts +3 -0
- package/esm/LinearFeatureDisplay/index.js +2 -0
- package/esm/LinearFeatureDisplay/model.d.ts +1415 -0
- package/esm/LinearFeatureDisplay/model.js +265 -0
- package/esm/LinearGenomeView/SVGErrorBox.d.ts +5 -0
- package/esm/LinearGenomeView/SVGErrorBox.js +4 -0
- package/esm/LinearGenomeView/afterAttach.d.ts +5 -0
- package/esm/LinearGenomeView/afterAttach.js +95 -0
- package/esm/LinearGenomeView/components/CenterLine.js +6 -4
- package/esm/LinearGenomeView/components/Cytobands.js +4 -4
- package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +1 -1
- package/esm/LinearGenomeView/components/ExportSvgDialog.js +5 -1
- package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +8 -2
- package/esm/LinearGenomeView/components/GetSequenceDialog.js +13 -16
- package/esm/LinearGenomeView/components/Gridlines.js +18 -15
- package/esm/LinearGenomeView/components/Header.js +9 -9
- package/esm/LinearGenomeView/components/HeaderPanControls.js +2 -2
- package/esm/LinearGenomeView/components/HeaderRegionWidth.js +4 -5
- package/esm/LinearGenomeView/components/HeaderTrackSelectorButton.js +2 -2
- package/esm/LinearGenomeView/components/HeaderZoomControls.js +3 -3
- package/esm/LinearGenomeView/components/Highlight.d.ts +1 -1
- package/esm/LinearGenomeView/components/Highlight.js +6 -6
- package/esm/LinearGenomeView/components/ImportForm.d.ts +1 -1
- package/esm/LinearGenomeView/components/ImportForm.js +14 -12
- package/esm/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +3 -3
- package/esm/LinearGenomeView/components/LinearGenomeView.js +7 -7
- package/esm/LinearGenomeView/components/LinearGenomeViewContainer.js +7 -8
- package/esm/LinearGenomeView/components/MiniControls.js +6 -6
- package/esm/LinearGenomeView/components/NoTracksActiveButton.js +2 -2
- package/esm/LinearGenomeView/components/OverviewHighlight.d.ts +1 -1
- package/esm/LinearGenomeView/components/OverviewHighlight.js +5 -5
- package/esm/LinearGenomeView/components/OverviewRubberband.js +4 -4
- package/esm/LinearGenomeView/components/OverviewRubberbandHoverTooltip.js +9 -5
- package/esm/LinearGenomeView/components/OverviewScalebar.js +36 -28
- package/esm/LinearGenomeView/components/OverviewScalebarPolygon.js +5 -5
- package/esm/LinearGenomeView/components/OverviewScalebarTickLabels.js +7 -7
- package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +1 -1
- package/esm/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +1 -1
- package/esm/LinearGenomeView/components/RefNameAutocomplete/index.js +10 -10
- package/esm/LinearGenomeView/components/RegionWidthEditorDialog.d.ts +1 -1
- package/esm/LinearGenomeView/components/RegionWidthEditorDialog.js +6 -4
- package/esm/LinearGenomeView/components/Rubberband.js +9 -7
- package/esm/LinearGenomeView/components/RubberbandSpan.js +4 -5
- package/esm/LinearGenomeView/components/Scalebar.js +8 -10
- package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.d.ts +1 -1
- package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.js +50 -17
- package/esm/LinearGenomeView/components/ScalebarRefNameLabels.d.ts +1 -1
- package/esm/LinearGenomeView/components/ScalebarRefNameLabels.js +13 -11
- package/esm/LinearGenomeView/components/SearchBox.d.ts +1 -1
- package/esm/LinearGenomeView/components/SearchBox.js +8 -9
- package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts +1 -1
- package/esm/LinearGenomeView/components/SearchResultsDialog.js +2 -2
- package/esm/LinearGenomeView/components/SearchResultsTable.d.ts +1 -1
- package/esm/LinearGenomeView/components/SearchResultsTable.js +4 -6
- package/esm/LinearGenomeView/components/SequenceSearchDialog.js +6 -6
- package/esm/LinearGenomeView/components/TrackContainer.js +32 -20
- package/esm/LinearGenomeView/components/TrackLabel.js +10 -11
- package/esm/LinearGenomeView/components/TrackLabelContainer.js +7 -8
- package/esm/LinearGenomeView/components/TrackLabelDragHandle.js +1 -1
- package/esm/LinearGenomeView/components/TrackLabelMenu.js +80 -68
- package/esm/LinearGenomeView/components/TrackRenderingContainer.d.ts +1 -2
- package/esm/LinearGenomeView/components/TrackRenderingContainer.js +5 -5
- package/esm/LinearGenomeView/components/TracksContainer.js +18 -15
- package/esm/LinearGenomeView/components/VerticalGuide.js +5 -3
- package/esm/LinearGenomeView/components/fetchSequence.d.ts +7 -2
- package/esm/LinearGenomeView/components/useRangeSelect.d.ts +27 -2
- package/esm/LinearGenomeView/components/useRangeSelect.js +26 -20
- package/esm/LinearGenomeView/components/useWheelScroll.js +22 -12
- package/esm/LinearGenomeView/components/util.d.ts +2 -13
- package/esm/LinearGenomeView/components/util.js +12 -31
- package/esm/LinearGenomeView/index.d.ts +1 -1
- package/esm/LinearGenomeView/index.js +3 -3
- package/esm/LinearGenomeView/keyboardHandler.d.ts +2 -0
- package/esm/LinearGenomeView/keyboardHandler.js +29 -0
- package/esm/LinearGenomeView/menuItems.d.ts +7 -0
- package/esm/LinearGenomeView/menuItems.js +299 -0
- package/esm/LinearGenomeView/model.d.ts +92 -89
- package/esm/LinearGenomeView/model.js +166 -414
- package/esm/LinearGenomeView/svgExportUtil.d.ts +9 -0
- package/esm/LinearGenomeView/svgExportUtil.js +6 -0
- package/{dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts → esm/LinearGenomeView/svgcomponents/SVGGridlines.d.ts} +2 -2
- package/esm/LinearGenomeView/svgcomponents/SVGGridlines.js +20 -0
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +5 -5
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +4 -3
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +24 -12
- package/esm/LinearGenomeView/svgcomponents/SVGRuler.js +13 -5
- package/esm/LinearGenomeView/svgcomponents/SVGTracks.js +2 -2
- package/esm/LinearGenomeView/types.d.ts +5 -1
- package/esm/LinearGenomeView/util.d.ts +2 -2
- package/esm/LinearGenomeView/util.js +8 -6
- package/esm/index.d.ts +975 -94
- package/esm/index.js +37 -38
- package/esm/searchUtils.d.ts +1 -1
- package/esm/searchUtils.js +6 -4
- package/package.json +28 -33
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +0 -8
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +0 -72
- package/dist/BaseLinearDisplay/components/Block.d.ts +0 -14
- package/dist/BaseLinearDisplay/components/Block.js +0 -50
- package/dist/BaseLinearDisplay/components/BlockErrorMessage.d.ts +0 -7
- package/dist/BaseLinearDisplay/components/BlockErrorMessage.js +0 -27
- package/dist/BaseLinearDisplay/components/BlockLoadingMessage.d.ts +0 -6
- package/dist/BaseLinearDisplay/components/BlockLoadingMessage.js +0 -26
- package/dist/BaseLinearDisplay/components/BlockMsg.d.ts +0 -6
- package/dist/BaseLinearDisplay/components/BlockMsg.js +0 -20
- package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +0 -9
- package/dist/BaseLinearDisplay/components/LinearBlocks.js +0 -61
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +0 -11
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +0 -59
- package/dist/BaseLinearDisplay/components/TooLargeMessage.d.ts +0 -10
- package/dist/BaseLinearDisplay/components/TooLargeMessage.js +0 -25
- package/dist/BaseLinearDisplay/components/Tooltip.d.ts +0 -11
- package/dist/BaseLinearDisplay/components/Tooltip.js +0 -24
- package/dist/BaseLinearDisplay/index.d.ts +0 -8
- package/dist/BaseLinearDisplay/index.js +0 -20
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +0 -311
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +0 -325
- package/dist/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +0 -32
- package/dist/BaseLinearDisplay/models/FeatureDensityMixin.js +0 -122
- package/dist/BaseLinearDisplay/models/TrackHeightMixin.d.ts +0 -11
- package/dist/BaseLinearDisplay/models/TrackHeightMixin.js +0 -35
- package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +0 -2
- package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.js +0 -33
- package/dist/BaseLinearDisplay/models/configSchema.d.ts +0 -29
- package/dist/BaseLinearDisplay/models/configSchema.js +0 -35
- package/dist/BaseLinearDisplay/models/renderSvg.d.ts +0 -7
- package/dist/BaseLinearDisplay/models/renderSvg.js +0 -80
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +0 -78
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +0 -229
- package/dist/BaseLinearDisplay/models/util.d.ts +0 -22
- package/dist/BaseLinearDisplay/models/util.js +0 -45
- package/dist/BasicTrack/configSchema.d.ts +0 -80
- package/dist/BasicTrack/configSchema.js +0 -10
- package/dist/BasicTrack/index.d.ts +0 -2
- package/dist/BasicTrack/index.js +0 -18
- package/dist/FeatureTrack/configSchema.d.ts +0 -80
- package/dist/FeatureTrack/configSchema.js +0 -10
- package/dist/FeatureTrack/index.d.ts +0 -2
- package/dist/FeatureTrack/index.js +0 -19
- package/dist/LaunchLinearGenomeView/index.d.ts +0 -2
- package/dist/LaunchLinearGenomeView/index.js +0 -70
- package/dist/LinearBareDisplay/configSchema.d.ts +0 -32
- package/dist/LinearBareDisplay/configSchema.js +0 -13
- package/dist/LinearBareDisplay/index.d.ts +0 -4
- package/dist/LinearBareDisplay/index.js +0 -26
- package/dist/LinearBareDisplay/model.d.ts +0 -309
- package/dist/LinearBareDisplay/model.js +0 -38
- package/dist/LinearBasicDisplay/components/AddFiltersDialog.js +0 -61
- package/dist/LinearBasicDisplay/components/SetMaxHeightDialog.js +0 -28
- package/dist/LinearBasicDisplay/configSchema.js +0 -13
- package/dist/LinearBasicDisplay/index.d.ts +0 -4
- package/dist/LinearBasicDisplay/index.js +0 -29
- package/dist/LinearBasicDisplay/model.d.ts +0 -346
- package/dist/LinearBasicDisplay/model.js +0 -192
- package/dist/LinearGenomeView/components/CenterLine.d.ts +0 -6
- package/dist/LinearGenomeView/components/CenterLine.js +0 -38
- package/dist/LinearGenomeView/components/Cytobands.d.ts +0 -9
- package/dist/LinearGenomeView/components/Cytobands.js +0 -89
- package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +0 -7
- package/dist/LinearGenomeView/components/ExportSvgDialog.js +0 -57
- package/dist/LinearGenomeView/components/GetSequenceDialog.d.ts +0 -6
- package/dist/LinearGenomeView/components/GetSequenceDialog.js +0 -109
- package/dist/LinearGenomeView/components/Gridlines.d.ts +0 -7
- package/dist/LinearGenomeView/components/Gridlines.js +0 -70
- package/dist/LinearGenomeView/components/Header.d.ts +0 -5
- package/dist/LinearGenomeView/components/Header.js +0 -38
- package/dist/LinearGenomeView/components/HeaderPanControls.d.ts +0 -6
- package/dist/LinearGenomeView/components/HeaderPanControls.js +0 -27
- package/dist/LinearGenomeView/components/HeaderRegionWidth.d.ts +0 -5
- package/dist/LinearGenomeView/components/HeaderRegionWidth.js +0 -21
- package/dist/LinearGenomeView/components/HeaderTrackSelectorButton.d.ts +0 -5
- package/dist/LinearGenomeView/components/HeaderTrackSelectorButton.js +0 -19
- package/dist/LinearGenomeView/components/HeaderZoomControls.d.ts +0 -5
- package/dist/LinearGenomeView/components/HeaderZoomControls.js +0 -109
- package/dist/LinearGenomeView/components/Highlight.d.ts +0 -12
- package/dist/LinearGenomeView/components/Highlight.js +0 -95
- package/dist/LinearGenomeView/components/ImportForm.d.ts +0 -6
- package/dist/LinearGenomeView/components/ImportForm.js +0 -80
- package/dist/LinearGenomeView/components/ImportFormRefNameAutocomplete.d.ts +0 -11
- package/dist/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +0 -32
- package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +0 -5
- package/dist/LinearGenomeView/components/LinearGenomeView.js +0 -57
- package/dist/LinearGenomeView/components/LinearGenomeViewContainer.d.ts +0 -5
- package/dist/LinearGenomeView/components/LinearGenomeViewContainer.js +0 -98
- package/dist/LinearGenomeView/components/MiniControls.d.ts +0 -5
- package/dist/LinearGenomeView/components/MiniControls.js +0 -36
- package/dist/LinearGenomeView/components/NoTracksActiveButton.d.ts +0 -5
- package/dist/LinearGenomeView/components/NoTracksActiveButton.js +0 -23
- package/dist/LinearGenomeView/components/OverviewHighlight.d.ts +0 -8
- package/dist/LinearGenomeView/components/OverviewHighlight.js +0 -50
- package/dist/LinearGenomeView/components/OverviewRubberband.d.ts +0 -9
- package/dist/LinearGenomeView/components/OverviewRubberband.js +0 -113
- package/dist/LinearGenomeView/components/OverviewRubberbandHoverTooltip.d.ts +0 -10
- package/dist/LinearGenomeView/components/OverviewRubberbandHoverTooltip.js +0 -28
- package/dist/LinearGenomeView/components/OverviewScalebar.d.ts +0 -7
- package/dist/LinearGenomeView/components/OverviewScalebar.js +0 -146
- package/dist/LinearGenomeView/components/OverviewScalebarPolygon.d.ts +0 -8
- package/dist/LinearGenomeView/components/OverviewScalebarPolygon.js +0 -41
- package/dist/LinearGenomeView/components/OverviewScalebarTickLabels.d.ts +0 -10
- package/dist/LinearGenomeView/components/OverviewScalebarTickLabels.js +0 -37
- package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +0 -8
- package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +0 -18
- package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +0 -3
- package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +0 -56
- package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.d.ts +0 -3
- package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js +0 -11
- package/dist/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +0 -16
- package/dist/LinearGenomeView/components/RefNameAutocomplete/index.js +0 -127
- package/dist/LinearGenomeView/components/RefNameAutocomplete/util.d.ts +0 -10
- package/dist/LinearGenomeView/components/RefNameAutocomplete/util.js +0 -53
- package/dist/LinearGenomeView/components/RegionWidthEditorDialog.d.ts +0 -6
- package/dist/LinearGenomeView/components/RegionWidthEditorDialog.js +0 -30
- package/dist/LinearGenomeView/components/Rubberband.d.ts +0 -7
- package/dist/LinearGenomeView/components/Rubberband.js +0 -35
- package/dist/LinearGenomeView/components/RubberbandSpan.d.ts +0 -15
- package/dist/LinearGenomeView/components/RubberbandSpan.js +0 -39
- package/dist/LinearGenomeView/components/RubberbandTooltip.d.ts +0 -5
- package/dist/LinearGenomeView/components/RubberbandTooltip.js +0 -20
- package/dist/LinearGenomeView/components/Scalebar.d.ts +0 -10
- package/dist/LinearGenomeView/components/Scalebar.js +0 -40
- package/dist/LinearGenomeView/components/ScalebarCoordinateLabels.d.ts +0 -6
- package/dist/LinearGenomeView/components/ScalebarCoordinateLabels.js +0 -29
- package/dist/LinearGenomeView/components/ScalebarCoordinateTicks.d.ts +0 -6
- package/dist/LinearGenomeView/components/ScalebarCoordinateTicks.js +0 -38
- package/dist/LinearGenomeView/components/ScalebarRefNameLabels.d.ts +0 -6
- package/dist/LinearGenomeView/components/ScalebarRefNameLabels.js +0 -46
- package/dist/LinearGenomeView/components/SearchBox.d.ts +0 -6
- package/dist/LinearGenomeView/components/SearchBox.js +0 -88
- package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +0 -9
- package/dist/LinearGenomeView/components/SearchResultsDialog.js +0 -15
- package/dist/LinearGenomeView/components/SearchResultsTable.d.ts +0 -8
- package/dist/LinearGenomeView/components/SearchResultsTable.js +0 -74
- package/dist/LinearGenomeView/components/SequenceSearchDialog.d.ts +0 -8
- package/dist/LinearGenomeView/components/SequenceSearchDialog.js +0 -67
- package/dist/LinearGenomeView/components/TrackContainer.d.ts +0 -8
- package/dist/LinearGenomeView/components/TrackContainer.js +0 -51
- package/dist/LinearGenomeView/components/TrackLabel.d.ts +0 -7
- package/dist/LinearGenomeView/components/TrackLabel.js +0 -49
- package/dist/LinearGenomeView/components/TrackLabelContainer.d.ts +0 -8
- package/dist/LinearGenomeView/components/TrackLabelContainer.js +0 -31
- package/dist/LinearGenomeView/components/TrackLabelDragHandle.d.ts +0 -8
- package/dist/LinearGenomeView/components/TrackLabelDragHandle.js +0 -32
- package/dist/LinearGenomeView/components/TrackLabelMenu.d.ts +0 -5
- package/dist/LinearGenomeView/components/TrackLabelMenu.js +0 -93
- package/dist/LinearGenomeView/components/TrackRenderingContainer.d.ts +0 -9
- package/dist/LinearGenomeView/components/TrackRenderingContainer.js +0 -50
- package/dist/LinearGenomeView/components/TracksContainer.d.ts +0 -7
- package/dist/LinearGenomeView/components/TracksContainer.js +0 -84
- package/dist/LinearGenomeView/components/VerticalGuide.d.ts +0 -7
- package/dist/LinearGenomeView/components/VerticalGuide.js +0 -31
- package/dist/LinearGenomeView/components/fetchSequence.d.ts +0 -4
- package/dist/LinearGenomeView/components/fetchSequence.js +0 -29
- package/dist/LinearGenomeView/components/useRangeSelect.d.ts +0 -59
- package/dist/LinearGenomeView/components/useRangeSelect.js +0 -131
- package/dist/LinearGenomeView/components/useSideScroll.d.ts +0 -6
- package/dist/LinearGenomeView/components/useSideScroll.js +0 -60
- package/dist/LinearGenomeView/components/useWheelScroll.d.ts +0 -7
- package/dist/LinearGenomeView/components/useWheelScroll.js +0 -62
- package/dist/LinearGenomeView/components/util.d.ts +0 -25
- package/dist/LinearGenomeView/components/util.js +0 -49
- package/dist/LinearGenomeView/consts.d.ts +0 -7
- package/dist/LinearGenomeView/consts.js +0 -10
- package/dist/LinearGenomeView/index.d.ts +0 -3
- package/dist/LinearGenomeView/index.js +0 -53
- package/dist/LinearGenomeView/model.d.ts +0 -268
- package/dist/LinearGenomeView/model.js +0 -1109
- package/dist/LinearGenomeView/svgcomponents/SVGBackground.d.ts +0 -5
- package/dist/LinearGenomeView/svgcomponents/SVGBackground.js +0 -10
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.d.ts +0 -7
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.js +0 -47
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +0 -6
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +0 -42
- package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +0 -8
- package/dist/LinearGenomeView/svgcomponents/SVGRuler.d.ts +0 -7
- package/dist/LinearGenomeView/svgcomponents/SVGRuler.js +0 -39
- package/dist/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +0 -7
- package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js +0 -17
- package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +0 -7
- package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js +0 -14
- package/dist/LinearGenomeView/svgcomponents/SVGTracks.d.ts +0 -21
- package/dist/LinearGenomeView/svgcomponents/SVGTracks.js +0 -32
- package/dist/LinearGenomeView/svgcomponents/util.d.ts +0 -8
- package/dist/LinearGenomeView/svgcomponents/util.js +0 -8
- package/dist/LinearGenomeView/types.d.ts +0 -43
- package/dist/LinearGenomeView/types.js +0 -2
- package/dist/LinearGenomeView/util.d.ts +0 -26
- package/dist/LinearGenomeView/util.js +0 -138
- package/dist/index.d.ts +0 -353
- package/dist/index.js +0 -120
- package/dist/searchUtils.d.ts +0 -26
- package/dist/searchUtils.js +0 -80
- package/esm/BaseLinearDisplay/components/BlockLoadingMessage.d.ts +0 -6
- package/esm/BaseLinearDisplay/components/BlockLoadingMessage.js +0 -24
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +0 -311
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +0 -286
- package/esm/LinearBasicDisplay/components/AddFiltersDialog.d.ts +0 -9
- package/esm/LinearBasicDisplay/components/SetMaxHeightDialog.d.ts +0 -8
- package/esm/LinearGenomeView/components/ScalebarCoordinateTicks.d.ts +0 -6
- package/esm/LinearGenomeView/components/ScalebarCoordinateTicks.js +0 -36
- /package/{dist/LinearBasicDisplay → esm/LinearFeatureDisplay}/components/AddFiltersDialog.d.ts +0 -0
- /package/{dist/LinearBasicDisplay → esm/LinearFeatureDisplay}/components/SetMaxHeightDialog.d.ts +0 -0
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}
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-
self.features = features;
|
|
91
|
-
self.layout = layout;
|
|
92
|
-
self.error = undefined;
|
|
93
|
-
self.maxHeightReached = maxHeightReached;
|
|
94
|
-
self.renderProps = renderProps;
|
|
95
|
-
self.stopToken = undefined;
|
|
96
|
-
},
|
|
97
|
-
setError(error) {
|
|
98
|
-
console.error(error);
|
|
99
|
-
if (self.stopToken !== undefined) {
|
|
100
|
-
(0, stopToken_1.stopStopToken)(self.stopToken);
|
|
101
|
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}
|
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102
|
-
self.filled = false;
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103
|
-
self.message = undefined;
|
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104
|
-
self.reactElement = undefined;
|
|
105
|
-
self.features = undefined;
|
|
106
|
-
self.layout = undefined;
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|
107
|
-
self.maxHeightReached = false;
|
|
108
|
-
self.error = error;
|
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109
|
-
self.renderProps = undefined;
|
|
110
|
-
self.stopToken = undefined;
|
|
111
|
-
if ((0, types_1.isRetryException)(error)) {
|
|
112
|
-
this.reload();
|
|
113
|
-
}
|
|
114
|
-
},
|
|
115
|
-
reload() {
|
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116
|
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self.stopToken = undefined;
|
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117
|
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self.filled = false;
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|
118
|
-
self.reactElement = undefined;
|
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119
|
-
self.features = undefined;
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120
|
-
self.layout = undefined;
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121
|
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self.error = undefined;
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122
|
-
self.message = undefined;
|
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123
|
-
self.maxHeightReached = false;
|
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|
-
self.ReactComponent = ServerSideRenderedBlockContent_1.default;
|
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|
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self.renderProps = undefined;
|
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126
|
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(0, mobx_state_tree_1.getParent)(self, 2).reload();
|
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},
|
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128
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-
beforeDestroy() {
|
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129
|
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;
|
|
130
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(async () => {
|
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131
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try {
|
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|
-
if (self.stopToken !== undefined) {
|
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133
|
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(0, stopToken_1.stopStopToken)(self.stopToken);
|
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|
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}
|
|
135
|
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const display = (0, util_1.getContainingDisplay)(self);
|
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136
|
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const { rpcManager } = (0, util_1.getSession)(self);
|
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const { rendererType } = display;
|
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|
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const { renderArgs } = renderBlockData((0, mobx_state_tree_1.cast)(self));
|
|
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|
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if (renderArgs) {
|
|
140
|
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await rendererType.freeResourcesInClient(rpcManager, JSON.parse(JSON.stringify(renderArgs)));
|
|
141
|
-
}
|
|
142
|
-
}
|
|
143
|
-
catch (e) {
|
|
144
|
-
console.error('Error while destroying block', e);
|
|
145
|
-
}
|
|
146
|
-
})();
|
|
147
|
-
},
|
|
148
|
-
}));
|
|
149
|
-
exports.default = blockState;
|
|
150
|
-
function renderBlockData(self, optDisplay) {
|
|
151
|
-
try {
|
|
152
|
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const display = optDisplay || (0, util_1.getContainingDisplay)(self);
|
|
153
|
-
const { assemblyManager, rpcManager } = (0, util_1.getSession)(display);
|
|
154
|
-
const { adapterConfig, rendererType, error, parentTrack } = display;
|
|
155
|
-
const assemblyNames = (0, tracks_1.getTrackAssemblyNames)(parentTrack);
|
|
156
|
-
const regionAsm = self.region.assemblyName;
|
|
157
|
-
if (!assemblyNames.includes(regionAsm) &&
|
|
158
|
-
!assemblyNames.some(name => { var _a; return (_a = assemblyManager.get(name)) === null || _a === void 0 ? void 0 : _a.hasName(regionAsm); })) {
|
|
159
|
-
throw new Error(`region assembly (${regionAsm}) does not match track assemblies (${assemblyNames})`);
|
|
160
|
-
}
|
|
161
|
-
const renderProps = display.renderProps();
|
|
162
|
-
const { config } = renderProps;
|
|
163
|
-
(0, configuration_1.readConfObject)(config);
|
|
164
|
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const sessionId = (0, tracks_1.getRpcSessionId)(display);
|
|
165
|
-
const layoutId = (0, util_1.getContainingTrack)(display).id;
|
|
166
|
-
const cannotBeRenderedReason = display.regionCannotBeRendered(self.region);
|
|
167
|
-
return {
|
|
168
|
-
rendererType,
|
|
169
|
-
rpcManager,
|
|
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|
-
renderProps,
|
|
171
|
-
cannotBeRenderedReason,
|
|
172
|
-
displayError: error,
|
|
173
|
-
renderArgs: {
|
|
174
|
-
statusCallback: (message) => {
|
|
175
|
-
if ((0, mobx_state_tree_1.isAlive)(self)) {
|
|
176
|
-
self.setStatus(message);
|
|
177
|
-
}
|
|
178
|
-
},
|
|
179
|
-
assemblyName: self.region.assemblyName,
|
|
180
|
-
regions: [self.region],
|
|
181
|
-
adapterConfig,
|
|
182
|
-
rendererType: rendererType.name,
|
|
183
|
-
sessionId,
|
|
184
|
-
layoutId,
|
|
185
|
-
blockKey: self.key,
|
|
186
|
-
reloadFlag: self.reloadFlag,
|
|
187
|
-
timeout: 1000000,
|
|
188
|
-
},
|
|
189
|
-
};
|
|
190
|
-
}
|
|
191
|
-
catch (e) {
|
|
192
|
-
return { displayError: e };
|
|
193
|
-
}
|
|
194
|
-
}
|
|
195
|
-
async function renderBlockEffect(props, stopToken, self) {
|
|
196
|
-
if (!props) {
|
|
197
|
-
return;
|
|
198
|
-
}
|
|
199
|
-
const { rendererType, renderProps, rpcManager, renderArgs, cannotBeRenderedReason, displayError, } = props;
|
|
200
|
-
if (!(0, mobx_state_tree_1.isAlive)(self)) {
|
|
201
|
-
return undefined;
|
|
202
|
-
}
|
|
203
|
-
else if (displayError) {
|
|
204
|
-
self.setError(displayError);
|
|
205
|
-
return undefined;
|
|
206
|
-
}
|
|
207
|
-
else if (cannotBeRenderedReason) {
|
|
208
|
-
self.setMessage(cannotBeRenderedReason);
|
|
209
|
-
return undefined;
|
|
210
|
-
}
|
|
211
|
-
else if (renderProps.notReady) {
|
|
212
|
-
return undefined;
|
|
213
|
-
}
|
|
214
|
-
else {
|
|
215
|
-
const { reactElement, features, layout, maxHeightReached } = await rendererType.renderInClient(rpcManager, {
|
|
216
|
-
...renderArgs,
|
|
217
|
-
...renderProps,
|
|
218
|
-
viewParams: (0, util_1.getViewParams)(self),
|
|
219
|
-
stopToken,
|
|
220
|
-
});
|
|
221
|
-
return {
|
|
222
|
-
reactElement,
|
|
223
|
-
features,
|
|
224
|
-
layout,
|
|
225
|
-
maxHeightReached,
|
|
226
|
-
renderProps,
|
|
227
|
-
};
|
|
228
|
-
}
|
|
229
|
-
}
|
|
@@ -1,22 +0,0 @@
|
|
|
1
|
-
import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
|
|
2
|
-
import type { FeatureDensityStats } from '@jbrowse/core/data_adapters/BaseAdapter';
|
|
3
|
-
import type { IAnyStateTreeNode } from 'mobx-state-tree';
|
|
4
|
-
export interface RenderProps {
|
|
5
|
-
rendererType: any;
|
|
6
|
-
renderArgs: Record<string, any>;
|
|
7
|
-
renderProps: Record<string, any>;
|
|
8
|
-
displayError: unknown;
|
|
9
|
-
rpcManager: {
|
|
10
|
-
call: (...args: unknown[]) => void;
|
|
11
|
-
};
|
|
12
|
-
cannotBeRenderedReason: string;
|
|
13
|
-
}
|
|
14
|
-
export interface ErrorProps {
|
|
15
|
-
displayError: string;
|
|
16
|
-
}
|
|
17
|
-
export declare function getDisplayStr(totalBytes: number): string;
|
|
18
|
-
export declare function getId(id: string, index: number): string;
|
|
19
|
-
export declare function getFeatureDensityStatsPre(self: IAnyStateTreeNode & {
|
|
20
|
-
adapterConfig?: AnyConfigurationModel;
|
|
21
|
-
setMessage: (arg: string) => void;
|
|
22
|
-
}): Promise<FeatureDensityStats>;
|
|
@@ -1,45 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.getDisplayStr = getDisplayStr;
|
|
4
|
-
exports.getId = getId;
|
|
5
|
-
exports.getFeatureDensityStatsPre = getFeatureDensityStatsPre;
|
|
6
|
-
const util_1 = require("@jbrowse/core/util");
|
|
7
|
-
const tracks_1 = require("@jbrowse/core/util/tracks");
|
|
8
|
-
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
9
|
-
function getDisplayStr(totalBytes) {
|
|
10
|
-
if (Math.floor(totalBytes / 1000000) > 0) {
|
|
11
|
-
return `${Number.parseFloat((totalBytes / 1000000).toPrecision(3))} Mb`;
|
|
12
|
-
}
|
|
13
|
-
else if (Math.floor(totalBytes / 1000) > 0) {
|
|
14
|
-
return `${Number.parseFloat((totalBytes / 1000).toPrecision(3))} Kb`;
|
|
15
|
-
}
|
|
16
|
-
else {
|
|
17
|
-
return `${Math.floor(totalBytes)} bytes`;
|
|
18
|
-
}
|
|
19
|
-
}
|
|
20
|
-
function getId(id, index) {
|
|
21
|
-
const notJest = typeof jest === 'undefined';
|
|
22
|
-
return ['clip', notJest ? id : 'jest', index, notJest ? Math.random() : '']
|
|
23
|
-
.filter(f => !!f)
|
|
24
|
-
.join('-');
|
|
25
|
-
}
|
|
26
|
-
async function getFeatureDensityStatsPre(self) {
|
|
27
|
-
const view = (0, util_1.getContainingView)(self);
|
|
28
|
-
const regions = view.staticBlocks.contentBlocks;
|
|
29
|
-
const { rpcManager } = (0, util_1.getSession)(self);
|
|
30
|
-
const { adapterConfig } = self;
|
|
31
|
-
if (!adapterConfig) {
|
|
32
|
-
return {};
|
|
33
|
-
}
|
|
34
|
-
const sessionId = (0, tracks_1.getRpcSessionId)(self);
|
|
35
|
-
return rpcManager.call(sessionId, 'CoreGetFeatureDensityStats', {
|
|
36
|
-
sessionId,
|
|
37
|
-
regions,
|
|
38
|
-
adapterConfig,
|
|
39
|
-
statusCallback: (message) => {
|
|
40
|
-
if ((0, mobx_state_tree_1.isAlive)(self)) {
|
|
41
|
-
self.setMessage(message);
|
|
42
|
-
}
|
|
43
|
-
},
|
|
44
|
-
});
|
|
45
|
-
}
|
|
@@ -1,80 +0,0 @@
|
|
|
1
|
-
import type PluginManager from '@jbrowse/core/PluginManager';
|
|
2
|
-
declare const configSchema: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
3
|
-
name: {
|
|
4
|
-
description: string;
|
|
5
|
-
type: string;
|
|
6
|
-
defaultValue: string;
|
|
7
|
-
};
|
|
8
|
-
assemblyNames: {
|
|
9
|
-
description: string;
|
|
10
|
-
type: string;
|
|
11
|
-
defaultValue: string[];
|
|
12
|
-
};
|
|
13
|
-
description: {
|
|
14
|
-
description: string;
|
|
15
|
-
type: string;
|
|
16
|
-
defaultValue: string;
|
|
17
|
-
};
|
|
18
|
-
category: {
|
|
19
|
-
description: string;
|
|
20
|
-
type: string;
|
|
21
|
-
defaultValue: never[];
|
|
22
|
-
};
|
|
23
|
-
metadata: {
|
|
24
|
-
type: string;
|
|
25
|
-
description: string;
|
|
26
|
-
defaultValue: {};
|
|
27
|
-
};
|
|
28
|
-
adapter: import("mobx-state-tree").IAnyModelType;
|
|
29
|
-
textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
30
|
-
indexingAttributes: {
|
|
31
|
-
type: string;
|
|
32
|
-
description: string;
|
|
33
|
-
defaultValue: string[];
|
|
34
|
-
};
|
|
35
|
-
indexingFeatureTypesToExclude: {
|
|
36
|
-
type: string;
|
|
37
|
-
description: string;
|
|
38
|
-
defaultValue: string[];
|
|
39
|
-
};
|
|
40
|
-
textSearchAdapter: import("mobx-state-tree").IAnyModelType;
|
|
41
|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
42
|
-
displays: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
|
|
43
|
-
formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
44
|
-
feature: {
|
|
45
|
-
type: string;
|
|
46
|
-
description: string;
|
|
47
|
-
defaultValue: {};
|
|
48
|
-
contextVariable: string[];
|
|
49
|
-
};
|
|
50
|
-
subfeatures: {
|
|
51
|
-
type: string;
|
|
52
|
-
description: string;
|
|
53
|
-
defaultValue: {};
|
|
54
|
-
contextVariable: string[];
|
|
55
|
-
};
|
|
56
|
-
depth: {
|
|
57
|
-
type: string;
|
|
58
|
-
defaultValue: number;
|
|
59
|
-
description: string;
|
|
60
|
-
};
|
|
61
|
-
maxDepth: {
|
|
62
|
-
type: string;
|
|
63
|
-
defaultValue: number;
|
|
64
|
-
description: string;
|
|
65
|
-
};
|
|
66
|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
67
|
-
formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
68
|
-
config: {
|
|
69
|
-
type: string;
|
|
70
|
-
description: string;
|
|
71
|
-
defaultValue: {};
|
|
72
|
-
contextVariable: string[];
|
|
73
|
-
};
|
|
74
|
-
hideUris: {
|
|
75
|
-
type: string;
|
|
76
|
-
defaultValue: boolean;
|
|
77
|
-
};
|
|
78
|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
79
|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>, "trackId">>;
|
|
80
|
-
export default configSchema;
|
|
@@ -1,10 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
const configuration_1 = require("@jbrowse/core/configuration");
|
|
4
|
-
const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
|
|
5
|
-
function x() { }
|
|
6
|
-
const configSchema = (pluginManager) => (0, configuration_1.ConfigurationSchema)('BasicTrack', {}, {
|
|
7
|
-
baseConfiguration: (0, pluggableElementTypes_1.createBaseTrackConfig)(pluginManager),
|
|
8
|
-
explicitIdentifier: 'trackId',
|
|
9
|
-
});
|
|
10
|
-
exports.default = configSchema;
|
package/dist/BasicTrack/index.js
DELETED
|
@@ -1,18 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
-
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
-
};
|
|
5
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
exports.default = BasicTrackF;
|
|
7
|
-
const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
|
|
8
|
-
const configSchema_1 = __importDefault(require("./configSchema"));
|
|
9
|
-
function BasicTrackF(pm) {
|
|
10
|
-
pm.addTrackType(() => {
|
|
11
|
-
const configSchema = (0, configSchema_1.default)(pm);
|
|
12
|
-
return new pluggableElementTypes_1.TrackType({
|
|
13
|
-
name: 'BasicTrack',
|
|
14
|
-
configSchema,
|
|
15
|
-
stateModel: (0, pluggableElementTypes_1.createBaseTrackModel)(pm, 'BasicTrack', configSchema),
|
|
16
|
-
});
|
|
17
|
-
});
|
|
18
|
-
}
|
|
@@ -1,80 +0,0 @@
|
|
|
1
|
-
import type PluginManager from '@jbrowse/core/PluginManager';
|
|
2
|
-
declare const configSchema: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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name: {
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description: string;
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type: string;
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defaultValue: string;
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};
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assemblyNames: {
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description: string;
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type: string;
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defaultValue: string[];
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};
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description: {
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description: string;
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type: string;
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defaultValue: string;
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};
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category: {
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description: string;
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type: string;
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defaultValue: never[];
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};
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metadata: {
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type: string;
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description: string;
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defaultValue: {};
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};
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adapter: import("mobx-state-tree").IAnyModelType;
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textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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indexingAttributes: {
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type: string;
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description: string;
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defaultValue: string[];
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};
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indexingFeatureTypesToExclude: {
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type: string;
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description: string;
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defaultValue: string[];
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};
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textSearchAdapter: import("mobx-state-tree").IAnyModelType;
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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displays: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
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formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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feature: {
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type: string;
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description: string;
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defaultValue: {};
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contextVariable: string[];
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};
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|
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subfeatures: {
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type: string;
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description: string;
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defaultValue: {};
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contextVariable: string[];
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};
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depth: {
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type: string;
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defaultValue: number;
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description: string;
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|
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};
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|
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|
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maxDepth: {
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|
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type: string;
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|
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defaultValue: number;
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|
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|
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description: string;
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|
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|
-
};
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|
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|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
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|
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formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
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|
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config: {
|
|
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|
-
type: string;
|
|
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|
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description: string;
|
|
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|
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defaultValue: {};
|
|
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|
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contextVariable: string[];
|
|
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|
-
};
|
|
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|
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hideUris: {
|
|
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|
-
type: string;
|
|
76
|
-
defaultValue: boolean;
|
|
77
|
-
};
|
|
78
|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
79
|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>, "trackId">>;
|
|
80
|
-
export default configSchema;
|
|
@@ -1,10 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
const configuration_1 = require("@jbrowse/core/configuration");
|
|
4
|
-
const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
|
|
5
|
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function x() { }
|
|
6
|
-
const configSchema = (pluginManager) => (0, configuration_1.ConfigurationSchema)('FeatureTrack', {}, {
|
|
7
|
-
baseConfiguration: (0, pluggableElementTypes_1.createBaseTrackConfig)(pluginManager),
|
|
8
|
-
explicitIdentifier: 'trackId',
|
|
9
|
-
});
|
|
10
|
-
exports.default = configSchema;
|