@jbrowse/plugin-linear-genome-view 3.6.5 → 4.0.0

package/dist/FeatureTrack/index.js

@@ -1,19 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = FeatureTrackF;
-const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
-const configSchema_1 = __importDefault(require("./configSchema"));
-function FeatureTrackF(pm) {
-    pm.addTrackType(() => {
-        const configSchema = (0, configSchema_1.default)(pm);
-        return new pluggableElementTypes_1.TrackType({
-            name: 'FeatureTrack',
-            displayName: 'Feature track',
-            configSchema,
-            stateModel: (0, pluggableElementTypes_1.createBaseTrackModel)(pm, 'FeatureTrack', configSchema),
-        });
-    });
-}

package/dist/LaunchLinearGenomeView/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function LaunchLinearGenomeViewF(pluginManager: PluginManager): void;

package/dist/LaunchLinearGenomeView/index.js

@@ -1,70 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = LaunchLinearGenomeViewF;
-const util_1 = require("@jbrowse/core/util");
-const searchUtils_1 = require("../searchUtils");
-function LaunchLinearGenomeViewF(pluginManager) {
-    pluginManager.addToExtensionPoint('LaunchView-LinearGenomeView', async ({ session, assembly, loc, tracks = [], tracklist, nav, highlight, }) => {
-        try {
-            const { assemblyManager } = session;
-            const view = session.addView('LinearGenomeView', {});
-            await (0, util_1.when)(() => !!view.volatileWidth);
-            if (!assembly) {
-                throw new Error('No assembly provided when launching linear genome view');
-            }
-            const asm = await assemblyManager.waitForAssembly(assembly);
-            if (!asm) {
-                throw new Error(`Assembly "${assembly}" not found when launching linear genome view`);
-            }
-            if (tracklist) {
-                view.activateTrackSelector();
-            }
-            if (nav !== undefined) {
-                view.setHideHeader(!nav);
-            }
-            if (highlight !== undefined) {
-                for (const h of highlight) {
-                    const p = (0, util_1.parseLocString)(h, refName => assemblyManager.isValidRefName(refName, assembly));
-                    const { start, end } = p;
-                    if (start !== undefined && end !== undefined) {
-                        view.addToHighlights({
-                            ...p,
-                            start,
-                            end,
-                            assemblyName: assembly,
-                        });
-                    }
-                }
-            }
-            await (0, searchUtils_1.handleSelectedRegion)({
-                input: loc,
-                model: view,
-                assembly: asm,
-            });
-            const idsNotFound = [];
-            for (const track of tracks) {
-                tryTrack(view, track, idsNotFound);
-            }
-            if (idsNotFound.length) {
-                throw new Error(`Could not resolve identifiers: ${idsNotFound.join(',')}`);
-            }
-        }
-        catch (e) {
-            session.notifyError(`${e}`, e);
-            throw e;
-        }
-    });
-}
-function tryTrack(model, trackId, idsNotFound) {
-    try {
-        model.showTrack(trackId);
-    }
-    catch (e) {
-        if (/Could not resolve identifier/.exec(`${e}`)) {
-            idsNotFound.push(trackId);
-        }
-        else {
-            throw e;
-        }
-    }
-}

package/dist/LinearBareDisplay/configSchema.d.ts

@@ -1,32 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    renderer: import("mobx-state-tree").IAnyModelType;
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    maxFeatureScreenDensity: {
-        type: string;
-        description: string;
-        defaultValue: number;
-    };
-    fetchSizeLimit: {
-        type: string;
-        defaultValue: number;
-        description: string;
-    };
-    height: {
-        type: string;
-        defaultValue: number;
-        description: string;
-    };
-    mouseover: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    jexlFilters: {
-        type: string;
-        description: string;
-        defaultValue: never[];
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;
-export { configSchemaFactory };

package/dist/LinearBareDisplay/configSchema.js

@@ -1,13 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.configSchemaFactory = configSchemaFactory;
-const configuration_1 = require("@jbrowse/core/configuration");
-const BaseLinearDisplay_1 = require("../BaseLinearDisplay");
-function configSchemaFactory(pluginManager) {
-    return (0, configuration_1.ConfigurationSchema)('LinearBareDisplay', {
-        renderer: pluginManager.pluggableConfigSchemaType('renderer'),
-    }, {
-        baseConfiguration: BaseLinearDisplay_1.baseLinearDisplayConfigSchema,
-        explicitlyTyped: true,
-    });
-}

package/dist/LinearBareDisplay/index.d.ts

@@ -1,4 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function LinearBareDisplayF(pluginManager: PluginManager): void;
-export { configSchemaFactory } from './configSchema';
-export { stateModelFactory } from './model';

package/dist/LinearBareDisplay/index.js

@@ -1,26 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.stateModelFactory = exports.configSchemaFactory = void 0;
-exports.default = LinearBareDisplayF;
-const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
-const configSchema_1 = require("./configSchema");
-const model_1 = require("./model");
-const BaseLinearDisplay_1 = require("../BaseLinearDisplay/");
-function LinearBareDisplayF(pluginManager) {
-    pluginManager.addDisplayType(() => {
-        const configSchema = (0, configSchema_1.configSchemaFactory)(pluginManager);
-        return new pluggableElementTypes_1.DisplayType({
-            name: 'LinearBareDisplay',
-            configSchema,
-            displayName: 'Bare feature display',
-            stateModel: (0, model_1.stateModelFactory)(configSchema),
-            trackType: 'BasicTrack',
-            viewType: 'LinearGenomeView',
-            ReactComponent: BaseLinearDisplay_1.BaseLinearDisplayComponent,
-        });
-    });
-}
-var configSchema_2 = require("./configSchema");
-Object.defineProperty(exports, "configSchemaFactory", { enumerable: true, get: function () { return configSchema_2.configSchemaFactory; } });
-var model_2 = require("./model");
-Object.defineProperty(exports, "stateModelFactory", { enumerable: true, get: function () { return model_2.stateModelFactory; } });

package/dist/LinearBareDisplay/model.d.ts

@@ -1,309 +0,0 @@
-import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
-export declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<string>;
-    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-} & {
-    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-} & {
-    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-} & {
-    blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
-        key: import("mobx-state-tree").ISimpleType<string>;
-        region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
-        reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
-        isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    }, {
-        stopToken: string | undefined;
-        filled: boolean;
-        reactElement: React.ReactElement | undefined;
-        features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
-        layout: any;
-        status: string;
-        error: unknown;
-        message: string | undefined;
-        maxHeightReached: boolean;
-        ReactComponent: ({ model, }: {
-            model: {
-                error?: unknown;
-                reload: () => void;
-                message: React.ReactNode;
-                filled?: boolean;
-                status?: string;
-                reactElement?: React.ReactElement;
-            };
-        }) => import("react/jsx-runtime").JSX.Element | undefined;
-        renderProps: any;
-    } & {
-        doReload(): void;
-        afterAttach(): void;
-        setStatus(message: string): void;
-        setLoading(newStopToken: string): void;
-        setMessage(messageText: string): void;
-        setRendered(props: import("../BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
-        setError(error: unknown): void;
-        reload(): void;
-        beforeDestroy(): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        maxFeatureScreenDensity: {
-            type: string;
-            description: string;
-            defaultValue: number;
-        };
-        fetchSizeLimit: {
-            type: string;
-            defaultValue: number;
-            description: string;
-        };
-        height: {
-            type: string;
-            defaultValue: number;
-            description: string;
-        };
-        mouseover: {
-            type: string;
-            description: string;
-            defaultValue: string;
-            contextVariable: string[];
-        };
-        jexlFilters: {
-            type: string;
-            description: string;
-            defaultValue: never[];
-        };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
-} & {
-    type: import("mobx-state-tree").ISimpleType<"LinearBareDisplay">;
-    configuration: AnyConfigurationSchemaType;
-}, {
-    rendererTypeName: string;
-    error: unknown;
-    message: string | undefined;
-} & {
-    readonly RenderingComponent: React.FC<{
-        model: {
-            id: string;
-            type: string;
-            rpcDriverName: string | undefined;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            rendererTypeName: string;
-            error: unknown;
-            message: string | undefined;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }, {
-            rendererTypeName: string;
-            error: unknown;
-            message: string | undefined;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        onHorizontalScroll?: () => void;
-        blockState?: Record<string, any>;
-    }>;
-    readonly DisplayBlurb: React.FC<{
-        model: {
-            id: string;
-            type: string;
-            rpcDriverName: string | undefined;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            rendererTypeName: string;
-            error: unknown;
-            message: string | undefined;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }, {
-            rendererTypeName: string;
-            error: unknown;
-            message: string | undefined;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    }> | null;
-    readonly adapterConfig: any;
-    readonly parentTrack: any;
-    renderProps(): any;
-    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
-    readonly DisplayMessageComponent: undefined | React.FC<any>;
-    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-    readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-    regionCannotBeRendered(): null;
-} & {
-    setMessage(arg?: string): void;
-    setError(error?: unknown): void;
-    setRpcDriverName(rpcDriverName: string): void;
-    reload(): void;
-} & {
-    scrollTop: number;
-} & {
-    readonly height: number;
-} & {
-    setScrollTop(scrollTop: number): void;
-    setHeight(displayHeight: number): number;
-    resizeHeight(distance: number): number;
-} & {
-    featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
-    featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
-    currStatsBpPerPx: number;
-} & {
-    readonly currentBytesRequested: number;
-    readonly currentFeatureScreenDensity: number;
-    readonly maxFeatureScreenDensity: any;
-    readonly featureDensityStatsReady: boolean;
-    readonly maxAllowableBytes: number;
-} & {
-    afterAttach(): void;
-} & {
-    setCurrStatsBpPerPx(n: number): void;
-    setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
-    getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
-    setFeatureDensityStatsP(arg: any): void;
-    setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
-    clearFeatureDensityStats(): void;
-} & {
-    readonly regionTooLarge: boolean;
-    readonly regionTooLargeReason: string;
-} & {
-    readonly statsReadyAndRegionNotTooLarge: boolean;
-    regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
-} & {
-    featureIdUnderMouse: undefined | string;
-    contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
-} & {
-    readonly DisplayMessageComponent: undefined | React.FC<any>;
-    readonly blockType: "staticBlocks" | "dynamicBlocks";
-    readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
-} & {
-    readonly renderDelay: number;
-    readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
-    readonly selectedFeatureId: string | undefined;
-    copyInfoToClipboard(feature: import("@jbrowse/core/util").Feature): void;
-} & {
-    readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
-    readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-    getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
-    getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
-    searchFeatureByID(id: string): [number, number, number, number] | undefined;
-} & {
-    addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
-    deleteBlock(key: string): void;
-    selectFeature(feature: import("@jbrowse/core/util").Feature): void;
-    navToFeature(feature: import("@jbrowse/core/util").Feature): void;
-    clearFeatureSelection(): void;
-    setFeatureIdUnderMouse(feature?: string): void;
-    setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
-} & {
-    reload(): Promise<void>;
-} & {
-    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-    contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-    renderProps(): any;
-} & {
-    renderSvg(opts: import("../BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
-    afterAttach(): void;
-} & {
-    readonly rendererConfig: {
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-                [x: string]: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
-        } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
-    } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
-    readonly rendererTypeName: any;
-} & {
-    renderProps(): any;
-}, {
-    type: string;
-} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<string>;
-    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-} & {
-    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-} & {
-    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-} & {
-    blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
-        key: import("mobx-state-tree").ISimpleType<string>;
-        region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
-        reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
-        isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    }, {
-        stopToken: string | undefined;
-        filled: boolean;
-        reactElement: React.ReactElement | undefined;
-        features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
-        layout: any;
-        status: string;
-        error: unknown;
-        message: string | undefined;
-        maxHeightReached: boolean;
-        ReactComponent: ({ model, }: {
-            model: {
-                error?: unknown;
-                reload: () => void;
-                message: React.ReactNode;
-                filled?: boolean;
-                status?: string;
-                reactElement?: React.ReactElement;
-            };
-        }) => import("react/jsx-runtime").JSX.Element | undefined;
-        renderProps: any;
-    } & {
-        doReload(): void;
-        afterAttach(): void;
-        setStatus(message: string): void;
-        setLoading(newStopToken: string): void;
-        setMessage(messageText: string): void;
-        setRendered(props: import("../BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
-        setError(error: unknown): void;
-        reload(): void;
-        beforeDestroy(): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        maxFeatureScreenDensity: {
-            type: string;
-            description: string;
-            defaultValue: number;
-        };
-        fetchSizeLimit: {
-            type: string;
-            defaultValue: number;
-            description: string;
-        };
-        height: {
-            type: string;
-            defaultValue: number;
-            description: string;
-        };
-        mouseover: {
-            type: string;
-            description: string;
-            defaultValue: string;
-            contextVariable: string[];
-        };
-        jexlFilters: {
-            type: string;
-            description: string;
-            defaultValue: never[];
-        };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
-}>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
-    type: string;
-    id: string;
-    configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
-    rpcDriverName: string | undefined;
-    heightPreConfig: number | undefined;
-    userBpPerPxLimit: number | undefined;
-    userByteSizeLimit: number | undefined;
-} & import("mobx-state-tree")._NotCustomized>;

package/dist/LinearBareDisplay/model.js

@@ -1,38 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.stateModelFactory = stateModelFactory;
-const configuration_1 = require("@jbrowse/core/configuration");
-const util_1 = require("@jbrowse/core/util");
-const tracks_1 = require("@jbrowse/core/util/tracks");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const BaseLinearDisplay_1 = require("../BaseLinearDisplay");
-function stateModelFactory(configSchema) {
-    return mobx_state_tree_1.types
-        .compose('LinearBareDisplay', BaseLinearDisplay_1.BaseLinearDisplay, mobx_state_tree_1.types.model({
-        type: mobx_state_tree_1.types.literal('LinearBareDisplay'),
-        configuration: (0, configuration_1.ConfigurationReference)(configSchema),
-    }))
-        .views(self => ({
-        get rendererConfig() {
-            const configBlob = (0, configuration_1.getConf)(self, ['renderer']) || {};
-            const config = configBlob;
-            return self.rendererType.configSchema.create(config, (0, util_1.getEnv)(self));
-        },
-        get rendererTypeName() {
-            return (0, configuration_1.getConf)(self, ['renderer', 'type']);
-        },
-    }))
-        .views(self => {
-        const { renderProps: superRenderProps } = self;
-        return {
-            renderProps() {
-                return {
-                    ...superRenderProps(),
-                    ...(0, tracks_1.getParentRenderProps)(self),
-                    rpcDriverName: self.rpcDriverName,
-                    config: self.rendererConfig,
-                };
-            },
-        };
-    });
-}

package/dist/LinearBasicDisplay/components/AddFiltersDialog.js

@@ -1,61 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const jexlStrings_1 = require("@jbrowse/core/util/jexlStrings");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const useStyles = (0, mui_1.makeStyles)()({
-    dialogContent: {
-        width: '80em',
-    },
-    textAreaFont: {
-        fontFamily: 'Courier New',
-    },
-    error: {
-        color: 'red',
-        fontSize: '0.8em',
-    },
-});
-function checkJexl(code) {
-    (0, jexlStrings_1.stringToJexlExpression)(code);
-}
-const AddFiltersDialog = (0, mobx_react_1.observer)(function ({ model, handleClose, }) {
-    const { classes } = useStyles();
-    const { activeFilters } = model;
-    const [data, setData] = (0, react_1.useState)(activeFilters.join('\n'));
-    const [error, setError] = (0, react_1.useState)();
-    (0, react_1.useEffect)(() => {
-        try {
-            data
-                .split('\n')
-                .map(line => line.trim())
-                .filter(line => !!line)
-                .map(line => {
-                checkJexl(line.trim());
-            });
-            setError(undefined);
-        }
-        catch (e) {
-            console.error(e);
-            setError(e);
-        }
-    }, [data]);
-    return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { maxWidth: "xl", open: true, onClose: handleClose, title: "Add track filters", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { children: [(0, jsx_runtime_1.jsxs)("div", { children: ["Add filters, in jexl format, one per line, starting with the string jexl:. Examples:", ' ', (0, jsx_runtime_1.jsxs)("ul", { children: [(0, jsx_runtime_1.jsxs)("li", { children: [(0, jsx_runtime_1.jsx)("code", { children: "jexl:get(feature,'name')=='BRCA1'" }), " - show only feature where the name attribute is BRCA1"] }), (0, jsx_runtime_1.jsxs)("li", { children: [(0, jsx_runtime_1.jsx)("code", { children: "jexl:get(feature,'type')=='gene'" }), " - show only gene type features in a GFF that has many other feature types"] }), (0, jsx_runtime_1.jsxs)("li", { children: [(0, jsx_runtime_1.jsx)("code", { children: "jexl:get(feature,'score') > 400" }), " - show only features that have a score greater than 400"] }), (0, jsx_runtime_1.jsxs)("li", { children: [(0, jsx_runtime_1.jsx)("code", { children: "jexl:get(feature,'end') - get(feature,'start') < 1000000" }), ' ', "- show only features with length less than 1Mbp"] })] })] }), error ? (0, jsx_runtime_1.jsx)("p", { className: classes.error, children: `${error}` }) : null, (0, jsx_runtime_1.jsx)(material_1.TextField, { variant: "outlined", multiline: true, minRows: 5, maxRows: 10, className: classes.dialogContent, fullWidth: true, value: data, onChange: event => {
-                            setData(event.target.value);
-                        }, slotProps: {
-                            input: {
-                                classes: {
-                                    input: classes.textAreaFont,
-                                },
-                            },
-                        } })] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", type: "submit", autoFocus: true, disabled: !!error, onClick: () => {
-                            model.setJexlFilters(data.split('\n'));
-                            handleClose();
-                        }, children: "Submit" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
-                            handleClose();
-                        }, children: "Cancel" })] })] }));
-});
-exports.default = AddFiltersDialog;

package/dist/LinearBasicDisplay/components/SetMaxHeightDialog.js

@@ -1,28 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const useStyles = (0, mui_1.makeStyles)()({
-    root: {
-        width: 500,
-    },
-});
-const SetMaxHeightDialog = (0, mobx_react_1.observer)(function ({ model, handleClose, }) {
-    const { classes } = useStyles();
-    const { maxHeight = '' } = model;
-    const [max, setMax] = (0, react_1.useState)(`${maxHeight}`);
-    const ok = max !== '' && !Number.isNaN(+max);
-    return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { open: true, onClose: handleClose, title: "Set max height", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { className: classes.root, children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Set max height for the track. For example, you can increase this if the layout says \"Max height reached\"" }), (0, jsx_runtime_1.jsx)(material_1.TextField, { value: max, onChange: event => {
-                            setMax(event.target.value);
-                        }, placeholder: "Enter max score" }), !ok ? (0, jsx_runtime_1.jsx)("div", { style: { color: 'red' }, children: "Invalid number" }) : null] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", type: "submit", autoFocus: true, disabled: !ok, onClick: () => {
-                            model.setMaxHeight(+max);
-                            handleClose();
-                        }, children: "Submit" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
-                            handleClose();
-                        }, children: "Cancel" })] })] }));
-});
-exports.default = SetMaxHeightDialog;

package/dist/LinearBasicDisplay/configSchema.js

@@ -1,13 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-const BaseLinearDisplay_1 = require("../BaseLinearDisplay");
-function configSchemaFactory(pluginManager) {
-    return (0, configuration_1.ConfigurationSchema)('LinearBasicDisplay', {
-        renderer: pluginManager.pluggableConfigSchemaType('renderer'),
-    }, {
-        baseConfiguration: BaseLinearDisplay_1.baseLinearDisplayConfigSchema,
-        explicitlyTyped: true,
-    });
-}
-exports.default = configSchemaFactory;

package/dist/LinearBasicDisplay/index.d.ts

@@ -1,4 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function LinearBasicDisplay(pluginManager: PluginManager): void;
-export { default as modelFactory } from './model';
-export { default as configSchema } from './configSchema';