@jbrowse/plugin-linear-genome-view 1.7.0 → 1.7.4

package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts

@@ -1,124 +1,132 @@
-import React from 'react';
-import { Instance } from 'mobx-state-tree';
-import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
-import { ContentBlock } from '@jbrowse/core/util/blockTypes';
-import { Assembly } from '@jbrowse/core/assemblyManager/assembly';
-import { LinearGenomeViewModel } from '..';
-declare const Polygon: ({ model, overview, useOffset, }: {
-    model: LGV;
-    overview: Instance<Base1DViewModel>;
-    useOffset?: boolean | undefined;
-}) => JSX.Element | null;
-declare type LGV = LinearGenomeViewModel;
-declare const Cytobands: ({ overview, block, assembly, }: {
-    overview: Base1DViewModel;
-    assembly?: (import("mobx-state-tree").ModelInstanceTypeProps<{
-        configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-    }> & {
-        error: Error | undefined;
-        regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-        refNameAliases: {
-            [key: string]: string;
-        } | undefined;
-        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-    } & {
-        readonly initialized: boolean;
-        readonly name: string;
-        readonly aliases: string[];
-        hasName(name: string): boolean;
-        readonly allAliases: string[];
-        readonly refNames: string[] | undefined;
-        readonly allRefNames: string[] | undefined;
-        readonly rpcManager: any;
-        readonly refNameColors: string[];
-    } & {
-        getCanonicalRefName(refName: string): string;
-        getRefNameColor(refName: string): string | undefined;
-        isValidRefName(refName: string): boolean;
-    } & {
-        setLoading(): void;
-        setLoaded({ adapterRegionsWithAssembly, refNameAliases, cytobands, }: {
-            adapterRegionsWithAssembly: import("@jbrowse/core/util").Region[];
-            refNameAliases: Record<string, string>;
-            cytobands: import("@jbrowse/core/util").Feature[];
-        }): void;
-        setError(e: Error): void;
-        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-        setRefNameAliases(refNameAliases: Record<string, string>): void;
-        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-        afterAttach(): void;
-    } & {
-        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
-            forwardMap: {
-                [k: string]: string;
-            };
-            reverseMap: {
-                [k: string]: string;
-            };
-        }>;
-        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
-            [k: string]: string;
-        }>;
-        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
-            [k: string]: string;
-        }>;
-    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-        configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-    }, {
-        error: Error | undefined;
-        regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-        refNameAliases: {
-            [key: string]: string;
-        } | undefined;
-        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-    } & {
-        readonly initialized: boolean;
-        readonly name: string;
-        readonly aliases: string[];
-        hasName(name: string): boolean;
-        readonly allAliases: string[];
-        readonly refNames: string[] | undefined;
-        readonly allRefNames: string[] | undefined;
-        readonly rpcManager: any;
-        readonly refNameColors: string[];
-    } & {
-        getCanonicalRefName(refName: string): string;
-        getRefNameColor(refName: string): string | undefined;
-        isValidRefName(refName: string): boolean;
-    } & {
-        setLoading(): void;
-        setLoaded({ adapterRegionsWithAssembly, refNameAliases, cytobands, }: {
-            adapterRegionsWithAssembly: import("@jbrowse/core/util").Region[];
-            refNameAliases: Record<string, string>;
-            cytobands: import("@jbrowse/core/util").Feature[];
-        }): void;
-        setError(e: Error): void;
-        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-        setRefNameAliases(refNameAliases: Record<string, string>): void;
-        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-        afterAttach(): void;
-    } & {
-        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
-            forwardMap: {
-                [k: string]: string;
-            };
-            reverseMap: {
-                [k: string]: string;
-            };
-        }>;
-        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
-            [k: string]: string;
-        }>;
-        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
-            [k: string]: string;
-        }>;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
-    block: ContentBlock;
-}) => JSX.Element | null;
-declare function OverviewScaleBar({ model, children, }: {
-    model: LGV;
-    children: React.ReactNode;
-}): JSX.Element;
-declare const _default: typeof OverviewScaleBar;
-export default _default;
-export { Cytobands, Polygon };
+import React from 'react';
+import { Instance } from 'mobx-state-tree';
+import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
+import { ContentBlock } from '@jbrowse/core/util/blockTypes';
+import { Assembly } from '@jbrowse/core/assemblyManager/assembly';
+import { LinearGenomeViewModel } from '..';
+declare const Polygon: ({ model, overview, useOffset, }: {
+    model: LGV;
+    overview: Instance<Base1DViewModel>;
+    useOffset?: boolean | undefined;
+}) => JSX.Element | null;
+declare type LGV = LinearGenomeViewModel;
+declare const Cytobands: ({ overview, block, assembly, }: {
+    overview: Base1DViewModel;
+    assembly?: (import("mobx-state-tree").ModelInstanceTypeProps<{
+        configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+    }> & {
+        error: Error | undefined;
+        regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+        refNameAliases: {
+            [key: string]: string;
+        } | undefined;
+        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+    } & {
+        readonly initialized: boolean;
+        readonly name: string;
+        readonly aliases: string[];
+        hasName(name: string): boolean;
+        readonly allAliases: string[];
+        readonly refNames: string[] | undefined;
+        readonly allRefNames: string[] | undefined;
+        readonly rpcManager: any;
+        readonly refNameColors: string[];
+    } & {
+        getCanonicalRefName(refName: string): string;
+        getRefNameColor(refName: string): string | undefined;
+        isValidRefName(refName: string): boolean;
+    } & {
+        setLoading(): void;
+        setLoaded({ adapterRegionsWithAssembly, refNameAliases, cytobands, }: {
+            adapterRegionsWithAssembly: import("@jbrowse/core/util").Region[];
+            refNameAliases: {
+                [x: string]: string;
+            };
+            cytobands: import("@jbrowse/core/util").Feature[];
+        }): void;
+        setError(e: Error): void;
+        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+        setRefNameAliases(refNameAliases: {
+            [x: string]: string;
+        }): void;
+        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+        afterAttach(): void;
+    } & {
+        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
+            forwardMap: {
+                [k: string]: string;
+            };
+            reverseMap: {
+                [k: string]: string;
+            };
+        }>;
+        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
+            [k: string]: string;
+        }>;
+        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
+            [k: string]: string;
+        }>;
+    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+        configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+    }, {
+        error: Error | undefined;
+        regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+        refNameAliases: {
+            [key: string]: string;
+        } | undefined;
+        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+    } & {
+        readonly initialized: boolean;
+        readonly name: string;
+        readonly aliases: string[];
+        hasName(name: string): boolean;
+        readonly allAliases: string[];
+        readonly refNames: string[] | undefined;
+        readonly allRefNames: string[] | undefined;
+        readonly rpcManager: any;
+        readonly refNameColors: string[];
+    } & {
+        getCanonicalRefName(refName: string): string;
+        getRefNameColor(refName: string): string | undefined;
+        isValidRefName(refName: string): boolean;
+    } & {
+        setLoading(): void;
+        setLoaded({ adapterRegionsWithAssembly, refNameAliases, cytobands, }: {
+            adapterRegionsWithAssembly: import("@jbrowse/core/util").Region[];
+            refNameAliases: {
+                [x: string]: string;
+            };
+            cytobands: import("@jbrowse/core/util").Feature[];
+        }): void;
+        setError(e: Error): void;
+        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+        setRefNameAliases(refNameAliases: {
+            [x: string]: string;
+        }): void;
+        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+        afterAttach(): void;
+    } & {
+        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
+            forwardMap: {
+                [k: string]: string;
+            };
+            reverseMap: {
+                [k: string]: string;
+            };
+        }>;
+        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
+            [k: string]: string;
+        }>;
+        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
+            [k: string]: string;
+        }>;
+    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
+    block: ContentBlock;
+}) => JSX.Element | null;
+declare function OverviewScaleBar({ model, children, }: {
+    model: LGV;
+    children: React.ReactNode;
+}): JSX.Element;
+declare const _default: typeof OverviewScaleBar;
+export default _default;
+export { Cytobands, Polygon };

package/dist/LinearGenomeView/components/OverviewScaleBar.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = exports.Polygon = exports.Cytobands = void 0;
+exports.default = exports.Polygon = exports.Cytobands = void 0;
 
 var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
@@ -33,7 +33,7 @@ var _OverviewRubberBand = _interopRequireDefault(require("./OverviewRubberBand")
 
 function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
 
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
 
 var wholeSeqSpacer = 2;
 var useStyles = (0, _core.makeStyles)(function (theme) {
@@ -45,7 +45,7 @@ var useStyles = (0, _core.makeStyles)(function (theme) {
       border: '1px solid'
     },
     scaleBarContig: {
-      backgroundColor: theme.palette.background["default"],
+      backgroundColor: theme.palette.background.default,
       position: 'absolute',
       top: 0,
       height: _.HEADER_OVERVIEW_HEIGHT
@@ -122,7 +122,7 @@ var Polygon = (0, _mobxReact.observer)(function (_ref) {
   var startPx = Math.max(0, -offsetPx);
   var endPx = startPx + totalWidthPxWithoutBorders + contentBlocks.length * interRegionPaddingWidth / 2;
   var points = [[startPx, _.HEADER_BAR_HEIGHT], [endPx, _.HEADER_BAR_HEIGHT], [topRight, 0], [topLeft, 0]];
-  return /*#__PURE__*/_react["default"].createElement("polygon", {
+  return /*#__PURE__*/_react.default.createElement("polygon", {
     points: points.toString(),
     fill: (0, _core.alpha)(polygonColor, 0.3),
     stroke: (0, _core.alpha)(polygonColor, 0.8)
@@ -185,10 +185,10 @@ var Cytobands = (0, _mobxReact.observer)(function (_ref2) {
   var lcap = reversed ? arr.length - 1 : 0;
   var rcap = reversed ? 0 : arr.length - 1;
   var firstCent = true;
-  return cytobands ? /*#__PURE__*/_react["default"].createElement("g", {
+  return cytobands ? /*#__PURE__*/_react.default.createElement("g", {
     transform: "translate(-".concat(offsetPx, ")")
   }, cytobands.map(function (_ref3, index) {
-    var _ref4 = (0, _slicedToArray2["default"])(_ref3, 3),
+    var _ref4 = (0, _slicedToArray2.default)(_ref3, 3),
         start = _ref4[0],
         end = _ref4[1],
         type = _ref4[2];
@@ -197,7 +197,7 @@ var Cytobands = (0, _mobxReact.observer)(function (_ref2) {
 
     if (type === 'acen' && firstCent) {
       firstCent = false;
-      return /*#__PURE__*/_react["default"].createElement("polygon", {
+      return /*#__PURE__*/_react.default.createElement("polygon", {
         key: key,
         points: [[start, 0], [end, _.HEADER_OVERVIEW_HEIGHT / 2], [start, _.HEADER_OVERVIEW_HEIGHT]].toString(),
         fill: colorMap[type]
@@ -205,7 +205,7 @@ var Cytobands = (0, _mobxReact.observer)(function (_ref2) {
     }
 
     if (type === 'acen' && !firstCent) {
-      return /*#__PURE__*/_react["default"].createElement("polygon", {
+      return /*#__PURE__*/_react.default.createElement("polygon", {
         key: key,
         points: [[start, _.HEADER_OVERVIEW_HEIGHT / 2], [end, 0], [end, _.HEADER_OVERVIEW_HEIGHT]].toString(),
         fill: colorMap[type]
@@ -213,19 +213,19 @@ var Cytobands = (0, _mobxReact.observer)(function (_ref2) {
     }
 
     if (lcap === index) {
-      return /*#__PURE__*/_react["default"].createElement("path", {
+      return /*#__PURE__*/_react.default.createElement("path", {
         key: key,
         d: leftRoundedRect(Math.min(start, end), 0, Math.abs(end - start), _.HEADER_OVERVIEW_HEIGHT, 8),
         fill: colorMap[type]
       });
     } else if (rcap === index) {
-      return /*#__PURE__*/_react["default"].createElement("path", {
+      return /*#__PURE__*/_react.default.createElement("path", {
         key: key,
         d: rightRoundedRect(Math.min(start, end), 0, Math.abs(end - start) - 2, _.HEADER_OVERVIEW_HEIGHT, 8),
         fill: colorMap[type]
       });
     } else {
-      return /*#__PURE__*/_react["default"].createElement("rect", {
+      return /*#__PURE__*/_react.default.createElement("rect", {
         key: key,
         x: Math.min(start, end),
         y: 0,
@@ -266,21 +266,21 @@ var OverviewBox = (0, _mobxReact.observer)(function (_ref5) {
     tickLabels.push(reversed ? end - offsetLabel : start + offsetLabel);
   }
 
-  return /*#__PURE__*/_react["default"].createElement("div", null, /*#__PURE__*/_react["default"].createElement(_core.Typography, {
+  return /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement(_core.Typography, {
     style: {
       left: block.offsetPx + 3,
       color: showCytobands ? 'black' : refNameColor
     },
     className: classes.scaleBarRefName
-  }, refName), /*#__PURE__*/_react["default"].createElement("div", {
-    className: (0, _clsx["default"])(classes.scaleBarContig, showCytobands ? undefined : reversed ? classes.scaleBarContigReverse : classes.scaleBarContigForward, !showCytobands ? classes.scaleBarBorder : undefined),
+  }, refName), /*#__PURE__*/_react.default.createElement("div", {
+    className: (0, _clsx.default)(classes.scaleBarContig, showCytobands ? undefined : reversed ? classes.scaleBarContigReverse : classes.scaleBarContigForward, !showCytobands ? classes.scaleBarBorder : undefined),
     style: {
       left: block.offsetPx + cytobandOffset,
       width: block.widthPx,
       borderColor: refNameColor
     }
   }, !showCytobands ? tickLabels.map(function (tickLabel, labelIdx) {
-    return /*#__PURE__*/_react["default"].createElement(_core.Typography, {
+    return /*#__PURE__*/_react.default.createElement(_core.Typography, {
       key: "".concat(JSON.stringify(block), "-").concat(tickLabel, "-").concat(labelIdx),
       className: classes.scaleBarLabel,
       variant: "body2",
@@ -290,11 +290,11 @@ var OverviewBox = (0, _mobxReact.observer)(function (_ref5) {
         color: refNameColor
       }
     }, tickLabel.toLocaleString('en-US'));
-  }) : null, showCytobands ? /*#__PURE__*/_react["default"].createElement("svg", {
+  }) : null, showCytobands ? /*#__PURE__*/_react.default.createElement("svg", {
     style: {
       width: '100%'
     }
-  }, /*#__PURE__*/_react["default"].createElement(Cytobands, {
+  }, /*#__PURE__*/_react.default.createElement(Cytobands, {
     overview: overview,
     assembly: assembly,
     block: block
@@ -330,9 +330,9 @@ var ScaleBar = (0, _mobxReact.observer)(function (_ref6) {
   })) || 0;
   var color = showCytobands ? '#f00' : scaleBarColor;
   var transparency = showCytobands ? 0.1 : 0.3;
-  return /*#__PURE__*/_react["default"].createElement("div", {
+  return /*#__PURE__*/_react.default.createElement("div", {
     className: classes.scaleBar
-  }, /*#__PURE__*/_react["default"].createElement("div", {
+  }, /*#__PURE__*/_react.default.createElement("div", {
     className: classes.scaleBarVisibleRegion,
     style: {
       width: lastOverviewPx - firstOverviewPx,
@@ -341,7 +341,7 @@ var ScaleBar = (0, _mobxReact.observer)(function (_ref6) {
       borderColor: color
     }
   }), overviewVisibleRegions.map(function (block, idx) {
-    return !(block instanceof _blockTypes.ContentBlock) ? /*#__PURE__*/_react["default"].createElement("div", {
+    return !(block instanceof _blockTypes.ContentBlock) ? /*#__PURE__*/_react.default.createElement("div", {
       key: "".concat(JSON.stringify(block), "-").concat(idx),
       className: classes.scaleBarContig,
       style: {
@@ -350,7 +350,7 @@ var ScaleBar = (0, _mobxReact.observer)(function (_ref6) {
         backgroundColor: '#999',
         backgroundImage: 'repeating-linear-gradient(90deg, transparent, transparent 1px, rgba(255,255,255,.5) 1px, rgba(255,255,255,.5) 3px)'
       }
-    }) : /*#__PURE__*/_react["default"].createElement(OverviewBox, {
+    }) : /*#__PURE__*/_react.default.createElement(OverviewBox, {
       scale: scale,
       block: block,
       model: model,
@@ -369,7 +369,7 @@ function OverviewScaleBar(_ref7) {
       cytobandOffset = model.cytobandOffset,
       displayedRegions = model.displayedRegions;
 
-  var overview = _Base1DViewModel["default"].create({
+  var overview = _Base1DViewModel.default.create({
     displayedRegions: JSON.parse(JSON.stringify(displayedRegions)),
     interRegionPaddingWidth: 0,
     minimumBlockWidth: model.minimumBlockWidth
@@ -379,20 +379,20 @@ function OverviewScaleBar(_ref7) {
   overview.setVolatileWidth(modWidth);
   overview.showAllRegions();
   var scale = totalBp / (modWidth - (displayedRegions.length - 1) * wholeSeqSpacer);
-  return /*#__PURE__*/_react["default"].createElement("div", null, /*#__PURE__*/_react["default"].createElement(_OverviewRubberBand["default"], {
+  return /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement(_OverviewRubberBand.default, {
     model: model,
     overview: overview,
-    ControlComponent: /*#__PURE__*/_react["default"].createElement(ScaleBar, {
+    ControlComponent: /*#__PURE__*/_react.default.createElement(ScaleBar, {
       model: model,
       overview: overview,
       scale: scale
     })
-  }), /*#__PURE__*/_react["default"].createElement("div", {
+  }), /*#__PURE__*/_react.default.createElement("div", {
     className: classes.overview
-  }, /*#__PURE__*/_react["default"].createElement("svg", {
+  }, /*#__PURE__*/_react.default.createElement("svg", {
     height: _.HEADER_BAR_HEIGHT,
     className: classes.overviewSvg
-  }, /*#__PURE__*/_react["default"].createElement(Polygon, {
+  }, /*#__PURE__*/_react.default.createElement(Polygon, {
     model: model,
     overview: overview
   })), children));
@@ -400,4 +400,4 @@ function OverviewScaleBar(_ref7) {
 
 var _default = (0, _mobxReact.observer)(OverviewScaleBar);
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts

@@ -1,21 +1,21 @@
-import React from 'react';
-import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
-import { TextFieldProps as TFP } from '@material-ui/core';
-import { LinearGenomeViewModel } from '..';
-export interface Option {
-    group?: string;
-    result: BaseResult;
-}
-declare function RefNameAutocomplete({ model, showHelp, onSelect, assemblyName, style, fetchResults, value, minWidth, TextFieldProps, }: {
-    model: LinearGenomeViewModel;
-    onSelect: (region: BaseResult) => void;
-    assemblyName?: string;
-    value?: string;
-    fetchResults: (query: string) => Promise<BaseResult[]>;
-    style?: React.CSSProperties;
-    minWidth?: number;
-    showHelp?: boolean;
-    TextFieldProps?: TFP;
-}): JSX.Element;
-declare const _default: typeof RefNameAutocomplete;
-export default _default;
+import React from 'react';
+import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
+import { TextFieldProps as TFP } from '@material-ui/core';
+import { LinearGenomeViewModel } from '..';
+export interface Option {
+    group?: string;
+    result: BaseResult;
+}
+declare function RefNameAutocomplete({ model, showHelp, onSelect, assemblyName, style, fetchResults, value, minWidth, TextFieldProps, }: {
+    model: LinearGenomeViewModel;
+    onSelect: (region: BaseResult) => void;
+    assemblyName?: string;
+    value?: string;
+    fetchResults: (query: string) => Promise<BaseResult[]>;
+    style?: React.CSSProperties;
+    minWidth?: number;
+    showHelp?: boolean;
+    TextFieldProps?: TFP;
+}): JSX.Element;
+declare const _default: typeof RefNameAutocomplete;
+export default _default;