@jbrowse/plugin-linear-genome-view 1.7.0 → 1.7.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (89) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +13 -13
  2. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +18 -18
  3. package/dist/BaseLinearDisplay/components/Block.d.ts +15 -15
  4. package/dist/BaseLinearDisplay/components/Block.js +4 -4
  5. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +12 -12
  6. package/dist/BaseLinearDisplay/components/LinearBlocks.js +11 -11
  7. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
  8. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +16 -16
  9. package/dist/BaseLinearDisplay/index.d.ts +5 -5
  10. package/dist/BaseLinearDisplay/index.js +2 -2
  11. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +227 -230
  12. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +32 -32
  13. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -1
  14. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -96
  15. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +9 -9
  16. package/dist/LinearBareDisplay/configSchema.d.ts +2 -2
  17. package/dist/LinearBareDisplay/index.d.ts +2 -2
  18. package/dist/LinearBareDisplay/model.d.ts +192 -192
  19. package/dist/LinearBareDisplay/model.js +1 -1
  20. package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -10
  21. package/dist/LinearBasicDisplay/components/SetMaxHeight.js +11 -11
  22. package/dist/LinearBasicDisplay/configSchema.d.ts +2 -2
  23. package/dist/LinearBasicDisplay/configSchema.js +1 -1
  24. package/dist/LinearBasicDisplay/index.d.ts +2 -2
  25. package/dist/LinearBasicDisplay/index.js +2 -2
  26. package/dist/LinearBasicDisplay/model.d.ts +213 -213
  27. package/dist/LinearBasicDisplay/model.js +10 -10
  28. package/dist/LinearGenomeView/components/CenterLine.d.ts +14 -14
  29. package/dist/LinearGenomeView/components/CenterLine.js +5 -5
  30. package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -6
  31. package/dist/LinearGenomeView/components/ExportSvgDialog.js +16 -16
  32. package/dist/LinearGenomeView/components/Header.d.ts +7 -7
  33. package/dist/LinearGenomeView/components/Header.js +20 -20
  34. package/dist/LinearGenomeView/components/HelpDialog.d.ts +5 -5
  35. package/dist/LinearGenomeView/components/HelpDialog.js +4 -4
  36. package/dist/LinearGenomeView/components/ImportForm.d.ts +7 -7
  37. package/dist/LinearGenomeView/components/ImportForm.js +28 -28
  38. package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +7 -7
  39. package/dist/LinearGenomeView/components/LinearGenomeView.js +15 -15
  40. package/dist/LinearGenomeView/components/LinearGenomeView.test.js +9 -9
  41. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -4
  42. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +40 -40
  43. package/dist/LinearGenomeView/components/MiniControls.d.ts +6 -6
  44. package/dist/LinearGenomeView/components/MiniControls.js +9 -9
  45. package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -22
  46. package/dist/LinearGenomeView/components/OverviewRubberBand.js +19 -19
  47. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +132 -124
  48. package/dist/LinearGenomeView/components/OverviewScaleBar.js +28 -28
  49. package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +21 -21
  50. package/dist/LinearGenomeView/components/RefNameAutocomplete.js +27 -27
  51. package/dist/LinearGenomeView/components/RubberBand.d.ts +9 -20
  52. package/dist/LinearGenomeView/components/RubberBand.js +18 -18
  53. package/dist/LinearGenomeView/components/Ruler.d.ts +27 -27
  54. package/dist/LinearGenomeView/components/Ruler.js +11 -11
  55. package/dist/LinearGenomeView/components/ScaleBar.d.ts +401 -401
  56. package/dist/LinearGenomeView/components/ScaleBar.js +19 -19
  57. package/dist/LinearGenomeView/components/ScaleBar.test.js +3 -3
  58. package/dist/LinearGenomeView/components/SearchBox.d.ts +8 -8
  59. package/dist/LinearGenomeView/components/SearchBox.js +9 -9
  60. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +8 -8
  61. package/dist/LinearGenomeView/components/SearchResultsDialog.js +15 -15
  62. package/dist/LinearGenomeView/components/SequenceDialog.d.ts +8 -8
  63. package/dist/LinearGenomeView/components/SequenceDialog.js +21 -21
  64. package/dist/LinearGenomeView/components/TrackContainer.d.ts +9 -9
  65. package/dist/LinearGenomeView/components/TrackContainer.js +14 -14
  66. package/dist/LinearGenomeView/components/TrackLabel.d.ts +44 -44
  67. package/dist/LinearGenomeView/components/TrackLabel.js +14 -14
  68. package/dist/LinearGenomeView/components/TracksContainer.d.ts +10 -10
  69. package/dist/LinearGenomeView/components/TracksContainer.js +10 -10
  70. package/dist/LinearGenomeView/components/VerticalGuides.d.ts +9 -9
  71. package/dist/LinearGenomeView/components/VerticalGuides.js +11 -11
  72. package/dist/LinearGenomeView/components/ZoomControls.d.ts +7 -7
  73. package/dist/LinearGenomeView/components/ZoomControls.js +9 -9
  74. package/dist/LinearGenomeView/components/util.d.ts +2 -2
  75. package/dist/LinearGenomeView/index.d.ts +292 -292
  76. package/dist/LinearGenomeView/index.js +35 -35
  77. package/dist/LinearGenomeView/index.test.js +19 -19
  78. package/dist/LinearGenomeView/util.d.ts +14 -14
  79. package/dist/index.d.ts +565 -565
  80. package/dist/index.js +18 -18
  81. package/package.json +5 -5
  82. package/dist/LinearBareDisplay/index.test.d.ts +0 -1
  83. package/dist/LinearGenomeView/components/LinearGenomeView.test.d.ts +0 -1
  84. package/dist/plugin-linear-genome-view.cjs.development.js +0 -8121
  85. package/dist/plugin-linear-genome-view.cjs.development.js.map +0 -1
  86. package/dist/plugin-linear-genome-view.cjs.production.min.js +0 -2
  87. package/dist/plugin-linear-genome-view.cjs.production.min.js.map +0 -1
  88. package/dist/plugin-linear-genome-view.esm.js +0 -8105
  89. package/dist/plugin-linear-genome-view.esm.js.map +0 -1
@@ -1,213 +1,213 @@
1
- /// <reference types="react" />
2
- import { MenuItem } from '@jbrowse/core/ui';
3
- import { Instance } from 'mobx-state-tree';
4
- import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration/configurationSchema';
5
- declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
6
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
7
- type: import("mobx-state-tree").ISimpleType<string>;
8
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
9
- } & {
10
- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
11
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
12
- key: import("mobx-state-tree").ISimpleType<string>;
13
- region: import("mobx-state-tree").IModelType<{
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- refName: import("mobx-state-tree").ISimpleType<string>;
15
- start: import("mobx-state-tree").ISimpleType<number>;
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- end: import("mobx-state-tree").ISimpleType<number>;
17
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
18
- } & {
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- assemblyName: import("mobx-state-tree").ISimpleType<string>;
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- }, {
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- setRefName(newRefName: string): void;
22
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
23
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
24
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
25
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
26
- }, {
27
- renderInProgress: AbortController | undefined;
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- filled: boolean;
29
- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
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- features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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- layout: any;
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- status: string;
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- error: unknown;
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- message: string | undefined;
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- maxHeightReached: boolean;
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- ReactComponent: ({ model, }: {
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- model: any;
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- }) => any;
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- renderProps: any;
40
- } & {
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- doReload(): void;
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- afterAttach(): void;
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- setStatus(message: string): void;
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- setLoading(abortController: AbortController): void;
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- setMessage(messageText: string): void;
46
- setRendered(props: {
47
- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
48
- features: Map<string, import("@jbrowse/core/util").Feature>;
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- layout: any;
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- maxHeightReached: boolean;
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- renderProps: any;
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- } | undefined): void;
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- setError(error: unknown): void;
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- reload(): void;
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- beforeDestroy(): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
57
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
58
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
59
- } & {
60
- type: import("mobx-state-tree").ISimpleType<"LinearBasicDisplay">;
61
- trackShowLabels: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
62
- trackShowDescriptions: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
63
- trackDisplayMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
64
- trackMaxHeight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
65
- configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
66
- }, {
67
- rendererTypeName: string;
68
- error: unknown;
69
- } & {
70
- readonly RenderingComponent: import("react").FC<{
71
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
72
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
73
- type: import("mobx-state-tree").ISimpleType<string>;
74
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
75
- }> & {
76
- rendererTypeName: string;
77
- error: unknown;
78
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
79
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
80
- type: import("mobx-state-tree").ISimpleType<string>;
81
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
82
- }, {
83
- rendererTypeName: string;
84
- error: unknown;
85
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
86
- onHorizontalScroll?: Function | undefined;
87
- blockState?: Record<string, any> | undefined;
88
- }>;
89
- readonly DisplayBlurb: import("react").FC<{
90
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
91
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
92
- type: import("mobx-state-tree").ISimpleType<string>;
93
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
94
- }> & {
95
- rendererTypeName: string;
96
- error: unknown;
97
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
98
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
99
- type: import("mobx-state-tree").ISimpleType<string>;
100
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
101
- }, {
102
- rendererTypeName: string;
103
- error: unknown;
104
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
105
- }> | null;
106
- readonly adapterConfig: any;
107
- readonly parentTrack: any;
108
- renderProps(): any;
109
- readonly rendererType: any;
110
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
111
- trackMenuItems(): MenuItem[];
112
- readonly viewMenuActions: MenuItem[];
113
- regionCannotBeRendered(): undefined;
114
- } & {
115
- setError(error?: unknown): void;
116
- setRpcDriverName(rpcDriverName: string): void;
117
- reload(): void;
118
- } & {
119
- currBpPerPx: number;
120
- message: string;
121
- featureIdUnderMouse: string | undefined;
122
- contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
123
- scrollTop: number;
124
- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
125
- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
126
- } & {
127
- readonly blockType: "staticBlocks" | "dynamicBlocks";
128
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
129
- } & {
130
- readonly renderDelay: number;
131
- readonly TooltipComponent: import("react").FC<any>;
132
- readonly selectedFeatureId: string | undefined;
133
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
134
- } & {
135
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
136
- readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
137
- getFeatureOverlapping(blockKey: string, x: number, y: number): any;
138
- getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
139
- searchFeatureByID(id: string): [number, number, number, number] | undefined;
140
- readonly currentBytesRequested: number;
141
- readonly currentFeatureScreenDensity: number;
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- readonly maxFeatureScreenDensity: any;
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- readonly estimatedStatsReady: boolean;
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- readonly maxAllowableBytes: number;
145
- } & {
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- setMessage(message: string): void;
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- afterAttach(): void;
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- estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
149
- headers?: Record<string, string> | undefined;
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- signal?: AbortSignal | undefined;
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- filters?: string[] | undefined;
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- }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
153
- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
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- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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- clearRegionStats(): void;
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- setHeight(displayHeight: number): number;
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- resizeHeight(distance: number): number;
158
- setScrollTop(scrollTop: number): void;
159
- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
160
- addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
161
- setCurrBpPerPx(n: number): void;
162
- deleteBlock(key: string): void;
163
- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
164
- clearFeatureSelection(): void;
165
- setFeatureIdUnderMouse(feature: string | undefined): void;
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- reload(): void;
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- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
168
- } & {
169
- readonly regionTooLarge: boolean;
170
- readonly regionTooLargeReason: string;
171
- } & {
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- reload(): Promise<void>;
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- afterAttach(): void;
174
- } & {
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- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
176
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
177
- trackMenuItems(): MenuItem[];
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- contextMenuItems(): {
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- label: string;
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- icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
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- onClick: () => void;
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- }[];
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- renderProps(): any;
184
- } & {
185
- renderSvg(opts: import("../LinearGenomeView").ExportSvgOptions & {
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- overrideHeight: number;
187
- }): Promise<JSX.Element>;
188
- } & {
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- readonly rendererTypeName: any;
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- readonly showLabels: any;
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- readonly showDescriptions: any;
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- readonly maxHeight: any;
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- readonly displayMode: any;
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- readonly rendererConfig: any;
195
- } & {
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- toggleShowLabels(): void;
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- toggleShowDescriptions(): void;
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- setDisplayMode(val: string): void;
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- setMaxHeight(val: number): void;
200
- } & {
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- renderProps(): any;
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- trackMenuItems(): MenuItem[];
203
- }, import("mobx-state-tree")._NotCustomized, {
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- id: string;
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- type: string;
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- rpcDriverName: string | undefined;
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- height: number;
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- userBpPerPxLimit: number | undefined;
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- userByteSizeLimit: number | undefined;
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- } & import("mobx-state-tree")._NotCustomized>;
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- export declare type FeatureTrackStateModel = ReturnType<typeof stateModelFactory>;
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- export declare type FeatureTrackModel = Instance<FeatureTrackStateModel>;
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- export default stateModelFactory;
1
+ /// <reference types="react" />
2
+ import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
3
+ import { MenuItem } from '@jbrowse/core/ui';
4
+ import { Instance } from 'mobx-state-tree';
5
+ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
6
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
7
+ type: import("mobx-state-tree").ISimpleType<string>;
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+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
9
+ } & {
10
+ height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
11
+ blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
12
+ key: import("mobx-state-tree").ISimpleType<string>;
13
+ region: import("mobx-state-tree").IModelType<{
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+ refName: import("mobx-state-tree").ISimpleType<string>;
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+ start: import("mobx-state-tree").ISimpleType<number>;
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+ end: import("mobx-state-tree").ISimpleType<number>;
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+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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+ } & {
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+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
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+ }, {
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+ setRefName(newRefName: string): void;
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+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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+ reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
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+ isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ }, {
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+ renderInProgress: AbortController | undefined;
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+ filled: boolean;
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+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
30
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
31
+ layout: any;
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+ status: string;
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+ error: unknown;
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+ message: string | undefined;
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+ maxHeightReached: boolean;
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+ ReactComponent: ({ model, }: {
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+ model: any;
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+ }) => any;
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+ renderProps: any;
40
+ } & {
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+ doReload(): void;
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+ afterAttach(): void;
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+ setStatus(message: string): void;
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+ setLoading(abortController: AbortController): void;
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+ setMessage(messageText: string): void;
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+ setRendered(props: {
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+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
48
+ features: Map<string, import("@jbrowse/core/util").Feature>;
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+ layout: any;
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+ maxHeightReached: boolean;
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+ renderProps: any;
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+ } | undefined): void;
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+ setError(error: unknown): void;
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+ reload(): void;
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+ beforeDestroy(): void;
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+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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+ } & {
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+ type: import("mobx-state-tree").ISimpleType<"LinearBasicDisplay">;
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+ trackShowLabels: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
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+ trackShowDescriptions: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
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+ trackDisplayMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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+ trackMaxHeight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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+ configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
66
+ }, {
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+ rendererTypeName: string;
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+ error: unknown;
69
+ } & {
70
+ readonly RenderingComponent: import("react").FC<{
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+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
72
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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+ type: import("mobx-state-tree").ISimpleType<string>;
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+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
75
+ }> & {
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+ rendererTypeName: string;
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+ error: unknown;
78
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
79
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
80
+ type: import("mobx-state-tree").ISimpleType<string>;
81
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
82
+ }, {
83
+ rendererTypeName: string;
84
+ error: unknown;
85
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
86
+ onHorizontalScroll?: Function | undefined;
87
+ blockState?: Record<string, any> | undefined;
88
+ }>;
89
+ readonly DisplayBlurb: import("react").FC<{
90
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
91
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
92
+ type: import("mobx-state-tree").ISimpleType<string>;
93
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
94
+ }> & {
95
+ rendererTypeName: string;
96
+ error: unknown;
97
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
98
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
99
+ type: import("mobx-state-tree").ISimpleType<string>;
100
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
101
+ }, {
102
+ rendererTypeName: string;
103
+ error: unknown;
104
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
105
+ }> | null;
106
+ readonly adapterConfig: any;
107
+ readonly parentTrack: any;
108
+ renderProps(): any;
109
+ readonly rendererType: any;
110
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
111
+ trackMenuItems(): MenuItem[];
112
+ readonly viewMenuActions: MenuItem[];
113
+ regionCannotBeRendered(): undefined;
114
+ } & {
115
+ setError(error?: unknown): void;
116
+ setRpcDriverName(rpcDriverName: string): void;
117
+ reload(): void;
118
+ } & {
119
+ currBpPerPx: number;
120
+ message: string;
121
+ featureIdUnderMouse: string | undefined;
122
+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
123
+ scrollTop: number;
124
+ estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
125
+ estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
126
+ } & {
127
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
128
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
129
+ } & {
130
+ readonly renderDelay: number;
131
+ readonly TooltipComponent: import("react").FC<any>;
132
+ readonly selectedFeatureId: string | undefined;
133
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
134
+ } & {
135
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
136
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
137
+ getFeatureOverlapping(blockKey: string, x: number, y: number): any;
138
+ getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
139
+ searchFeatureByID(id: string): [number, number, number, number] | undefined;
140
+ readonly currentBytesRequested: number;
141
+ readonly currentFeatureScreenDensity: number;
142
+ readonly maxFeatureScreenDensity: any;
143
+ readonly estimatedStatsReady: boolean;
144
+ readonly maxAllowableBytes: number;
145
+ } & {
146
+ setMessage(message: string): void;
147
+ afterAttach(): void;
148
+ estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
149
+ headers?: Record<string, string> | undefined;
150
+ signal?: AbortSignal | undefined;
151
+ filters?: string[] | undefined;
152
+ }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
153
+ setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
154
+ setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
155
+ clearRegionStats(): void;
156
+ setHeight(displayHeight: number): number;
157
+ resizeHeight(distance: number): number;
158
+ setScrollTop(scrollTop: number): void;
159
+ updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
160
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
161
+ setCurrBpPerPx(n: number): void;
162
+ deleteBlock(key: string): void;
163
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
164
+ clearFeatureSelection(): void;
165
+ setFeatureIdUnderMouse(feature: string | undefined): void;
166
+ reload(): void;
167
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
168
+ } & {
169
+ readonly regionTooLarge: boolean;
170
+ readonly regionTooLargeReason: string;
171
+ } & {
172
+ reload(): Promise<void>;
173
+ afterAttach(): void;
174
+ } & {
175
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
176
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
177
+ trackMenuItems(): MenuItem[];
178
+ contextMenuItems(): {
179
+ label: string;
180
+ icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
181
+ onClick: () => void;
182
+ }[];
183
+ renderProps(): any;
184
+ } & {
185
+ renderSvg(opts: import("../LinearGenomeView").ExportSvgOptions & {
186
+ overrideHeight: number;
187
+ }): Promise<JSX.Element>;
188
+ } & {
189
+ readonly rendererTypeName: any;
190
+ readonly showLabels: any;
191
+ readonly showDescriptions: any;
192
+ readonly maxHeight: any;
193
+ readonly displayMode: any;
194
+ readonly rendererConfig: any;
195
+ } & {
196
+ toggleShowLabels(): void;
197
+ toggleShowDescriptions(): void;
198
+ setDisplayMode(val: string): void;
199
+ setMaxHeight(val: number): void;
200
+ } & {
201
+ renderProps(): any;
202
+ trackMenuItems(): MenuItem[];
203
+ }, import("mobx-state-tree")._NotCustomized, {
204
+ id: string;
205
+ type: string;
206
+ rpcDriverName: string | undefined;
207
+ height: number;
208
+ userBpPerPxLimit: number | undefined;
209
+ userByteSizeLimit: number | undefined;
210
+ } & import("mobx-state-tree")._NotCustomized>;
211
+ export declare type FeatureTrackStateModel = ReturnType<typeof stateModelFactory>;
212
+ export declare type FeatureTrackModel = Instance<FeatureTrackStateModel>;
213
+ export default stateModelFactory;
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = void 0;
8
+ exports.default = void 0;
9
9
 
10
10
  var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
11
11
 
@@ -27,11 +27,11 @@ var _BaseLinearDisplay = require("../BaseLinearDisplay");
27
27
 
28
28
  function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
29
29
 
30
- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
30
+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
31
31
 
32
32
  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
33
33
 
34
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || (0, _typeof2["default"])(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
34
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || (0, _typeof2.default)(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
35
35
 
36
36
  var SetMaxHeightDlg = /*#__PURE__*/(0, _react.lazy)(function () {
37
37
  return Promise.resolve().then(function () {
@@ -42,8 +42,8 @@ var SetMaxHeightDlg = /*#__PURE__*/(0, _react.lazy)(function () {
42
42
  var stateModelFactory = function stateModelFactory(configSchema) {
43
43
  return _mobxStateTree.types.compose('LinearBasicDisplay', _BaseLinearDisplay.BaseLinearDisplay, _mobxStateTree.types.model({
44
44
  type: _mobxStateTree.types.literal('LinearBasicDisplay'),
45
- trackShowLabels: _mobxStateTree.types.maybe(_mobxStateTree.types["boolean"]),
46
- trackShowDescriptions: _mobxStateTree.types.maybe(_mobxStateTree.types["boolean"]),
45
+ trackShowLabels: _mobxStateTree.types.maybe(_mobxStateTree.types.boolean),
46
+ trackShowDescriptions: _mobxStateTree.types.maybe(_mobxStateTree.types.boolean),
47
47
  trackDisplayMode: _mobxStateTree.types.maybe(_mobxStateTree.types.string),
48
48
  trackMaxHeight: _mobxStateTree.types.maybe(_mobxStateTree.types.number),
49
49
  configuration: (0, _configuration.ConfigurationReference)(configSchema)
@@ -115,9 +115,9 @@ var stateModelFactory = function stateModelFactory(configSchema) {
115
115
  });
116
116
  },
117
117
  trackMenuItems: function trackMenuItems() {
118
- return [].concat((0, _toConsumableArray2["default"])(superTrackMenuItems()), [{
118
+ return [].concat((0, _toConsumableArray2.default)(superTrackMenuItems()), [{
119
119
  label: 'Show labels',
120
- icon: _Visibility["default"],
120
+ icon: _Visibility.default,
121
121
  type: 'checkbox',
122
122
  checked: self.showLabels,
123
123
  onClick: function onClick() {
@@ -125,7 +125,7 @@ var stateModelFactory = function stateModelFactory(configSchema) {
125
125
  }
126
126
  }, {
127
127
  label: 'Show descriptions',
128
- icon: _Visibility["default"],
128
+ icon: _Visibility.default,
129
129
  type: 'checkbox',
130
130
  checked: self.showDescriptions,
131
131
  onClick: function onClick() {
@@ -133,7 +133,7 @@ var stateModelFactory = function stateModelFactory(configSchema) {
133
133
  }
134
134
  }, {
135
135
  label: 'Display mode',
136
- icon: _Visibility["default"],
136
+ icon: _Visibility.default,
137
137
  subMenu: ['compact', 'reducedRepresentation', 'normal', 'collapse'].map(function (val) {
138
138
  return {
139
139
  label: val,
@@ -159,4 +159,4 @@ var stateModelFactory = function stateModelFactory(configSchema) {
159
159
  };
160
160
 
161
161
  var _default = stateModelFactory;
162
- exports["default"] = _default;
162
+ exports.default = _default;
@@ -1,14 +1,14 @@
1
- /// <reference types="react" />
2
- import { Instance } from 'mobx-state-tree';
3
- import { LinearGenomeViewStateModel } from '..';
4
- declare type LGV = Instance<LinearGenomeViewStateModel>;
5
- declare function CenterLine({ model }: {
6
- model: LGV;
7
- }): JSX.Element | null;
8
- declare namespace CenterLine {
9
- var propTypes: {
10
- model: import("prop-types").Validator<any>;
11
- };
12
- }
13
- declare const _default: typeof CenterLine;
14
- export default _default;
1
+ /// <reference types="react" />
2
+ import { Instance } from 'mobx-state-tree';
3
+ import { LinearGenomeViewStateModel } from '..';
4
+ declare type LGV = Instance<LinearGenomeViewStateModel>;
5
+ declare function CenterLine({ model }: {
6
+ model: LGV;
7
+ }): JSX.Element | null;
8
+ declare namespace CenterLine {
9
+ var propTypes: {
10
+ model: import("prop-types").Validator<any>;
11
+ };
12
+ }
13
+ declare const _default: typeof CenterLine;
14
+ export default _default;
@@ -5,7 +5,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = void 0;
8
+ exports.default = void 0;
9
9
 
10
10
  var _styles = require("@material-ui/core/styles");
11
11
 
@@ -15,7 +15,7 @@ var _react = _interopRequireWildcard(require("react"));
15
15
 
16
16
  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
17
17
 
18
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
18
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
19
19
 
20
20
  var useStyles = (0, _styles.makeStyles)(function () {
21
21
  return {
@@ -49,7 +49,7 @@ function CenterLine(_ref) {
49
49
  var ref = (0, _react.useRef)(null);
50
50
  var classes = useStyles();
51
51
  var startingPosition = width / 2;
52
- return tracks.length ? /*#__PURE__*/_react["default"].createElement("div", {
52
+ return tracks.length ? /*#__PURE__*/_react.default.createElement("div", {
53
53
  "data-testid": "centerline_container",
54
54
  className: classes.centerLineContainer,
55
55
  role: "presentation",
@@ -58,7 +58,7 @@ function CenterLine(_ref) {
58
58
  left: "".concat(startingPosition, "px"),
59
59
  width: Math.max(1 / bpPerPx, 1)
60
60
  }
61
- }, centerLineInfo && /*#__PURE__*/_react["default"].createElement("div", {
61
+ }, centerLineInfo && /*#__PURE__*/_react.default.createElement("div", {
62
62
  // text that indicates what bp is center, positioned
63
63
  // at the bottom right of the center line
64
64
  "data-testid": "centerline_text",
@@ -77,4 +77,4 @@ CenterLine.propTypes = {
77
77
 
78
78
  var _default = (0, _mobxReact.observer)(CenterLine);
79
79
 
80
- exports["default"] = _default;
80
+ exports.default = _default;
@@ -1,6 +1,6 @@
1
- /// <reference types="react" />
2
- import { LinearGenomeViewModel as LGV } from '..';
3
- export default function ExportSvgDlg({ model, handleClose, }: {
4
- model: LGV;
5
- handleClose: () => void;
6
- }): JSX.Element;
1
+ /// <reference types="react" />
2
+ import { LinearGenomeViewModel as LGV } from '..';
3
+ export default function ExportSvgDlg({ model, handleClose, }: {
4
+ model: LGV;
5
+ handleClose: () => void;
6
+ }): JSX.Element;