@jbrowse/plugin-linear-genome-view 1.7.0 → 1.7.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (89) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +13 -13
  2. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +18 -18
  3. package/dist/BaseLinearDisplay/components/Block.d.ts +15 -15
  4. package/dist/BaseLinearDisplay/components/Block.js +4 -4
  5. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +12 -12
  6. package/dist/BaseLinearDisplay/components/LinearBlocks.js +11 -11
  7. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
  8. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +16 -16
  9. package/dist/BaseLinearDisplay/index.d.ts +5 -5
  10. package/dist/BaseLinearDisplay/index.js +2 -2
  11. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +227 -230
  12. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +32 -32
  13. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -1
  14. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -96
  15. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +9 -9
  16. package/dist/LinearBareDisplay/configSchema.d.ts +2 -2
  17. package/dist/LinearBareDisplay/index.d.ts +2 -2
  18. package/dist/LinearBareDisplay/model.d.ts +192 -192
  19. package/dist/LinearBareDisplay/model.js +1 -1
  20. package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -10
  21. package/dist/LinearBasicDisplay/components/SetMaxHeight.js +11 -11
  22. package/dist/LinearBasicDisplay/configSchema.d.ts +2 -2
  23. package/dist/LinearBasicDisplay/configSchema.js +1 -1
  24. package/dist/LinearBasicDisplay/index.d.ts +2 -2
  25. package/dist/LinearBasicDisplay/index.js +2 -2
  26. package/dist/LinearBasicDisplay/model.d.ts +213 -213
  27. package/dist/LinearBasicDisplay/model.js +10 -10
  28. package/dist/LinearGenomeView/components/CenterLine.d.ts +14 -14
  29. package/dist/LinearGenomeView/components/CenterLine.js +5 -5
  30. package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -6
  31. package/dist/LinearGenomeView/components/ExportSvgDialog.js +16 -16
  32. package/dist/LinearGenomeView/components/Header.d.ts +7 -7
  33. package/dist/LinearGenomeView/components/Header.js +20 -20
  34. package/dist/LinearGenomeView/components/HelpDialog.d.ts +5 -5
  35. package/dist/LinearGenomeView/components/HelpDialog.js +4 -4
  36. package/dist/LinearGenomeView/components/ImportForm.d.ts +7 -7
  37. package/dist/LinearGenomeView/components/ImportForm.js +28 -28
  38. package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +7 -7
  39. package/dist/LinearGenomeView/components/LinearGenomeView.js +15 -15
  40. package/dist/LinearGenomeView/components/LinearGenomeView.test.js +9 -9
  41. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -4
  42. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +40 -40
  43. package/dist/LinearGenomeView/components/MiniControls.d.ts +6 -6
  44. package/dist/LinearGenomeView/components/MiniControls.js +9 -9
  45. package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -22
  46. package/dist/LinearGenomeView/components/OverviewRubberBand.js +19 -19
  47. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +132 -124
  48. package/dist/LinearGenomeView/components/OverviewScaleBar.js +28 -28
  49. package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +21 -21
  50. package/dist/LinearGenomeView/components/RefNameAutocomplete.js +27 -27
  51. package/dist/LinearGenomeView/components/RubberBand.d.ts +9 -20
  52. package/dist/LinearGenomeView/components/RubberBand.js +18 -18
  53. package/dist/LinearGenomeView/components/Ruler.d.ts +27 -27
  54. package/dist/LinearGenomeView/components/Ruler.js +11 -11
  55. package/dist/LinearGenomeView/components/ScaleBar.d.ts +401 -401
  56. package/dist/LinearGenomeView/components/ScaleBar.js +19 -19
  57. package/dist/LinearGenomeView/components/ScaleBar.test.js +3 -3
  58. package/dist/LinearGenomeView/components/SearchBox.d.ts +8 -8
  59. package/dist/LinearGenomeView/components/SearchBox.js +9 -9
  60. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +8 -8
  61. package/dist/LinearGenomeView/components/SearchResultsDialog.js +15 -15
  62. package/dist/LinearGenomeView/components/SequenceDialog.d.ts +8 -8
  63. package/dist/LinearGenomeView/components/SequenceDialog.js +21 -21
  64. package/dist/LinearGenomeView/components/TrackContainer.d.ts +9 -9
  65. package/dist/LinearGenomeView/components/TrackContainer.js +14 -14
  66. package/dist/LinearGenomeView/components/TrackLabel.d.ts +44 -44
  67. package/dist/LinearGenomeView/components/TrackLabel.js +14 -14
  68. package/dist/LinearGenomeView/components/TracksContainer.d.ts +10 -10
  69. package/dist/LinearGenomeView/components/TracksContainer.js +10 -10
  70. package/dist/LinearGenomeView/components/VerticalGuides.d.ts +9 -9
  71. package/dist/LinearGenomeView/components/VerticalGuides.js +11 -11
  72. package/dist/LinearGenomeView/components/ZoomControls.d.ts +7 -7
  73. package/dist/LinearGenomeView/components/ZoomControls.js +9 -9
  74. package/dist/LinearGenomeView/components/util.d.ts +2 -2
  75. package/dist/LinearGenomeView/index.d.ts +292 -292
  76. package/dist/LinearGenomeView/index.js +35 -35
  77. package/dist/LinearGenomeView/index.test.js +19 -19
  78. package/dist/LinearGenomeView/util.d.ts +14 -14
  79. package/dist/index.d.ts +565 -565
  80. package/dist/index.js +18 -18
  81. package/package.json +5 -5
  82. package/dist/LinearBareDisplay/index.test.d.ts +0 -1
  83. package/dist/LinearGenomeView/components/LinearGenomeView.test.d.ts +0 -1
  84. package/dist/plugin-linear-genome-view.cjs.development.js +0 -8121
  85. package/dist/plugin-linear-genome-view.cjs.development.js.map +0 -1
  86. package/dist/plugin-linear-genome-view.cjs.production.min.js +0 -2
  87. package/dist/plugin-linear-genome-view.cjs.production.min.js.map +0 -1
  88. package/dist/plugin-linear-genome-view.esm.js +0 -8105
  89. package/dist/plugin-linear-genome-view.esm.js.map +0 -1
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
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  Object.defineProperty(exports, "__esModule", {
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- exports["default"] = void 0;
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@@ -31,7 +31,7 @@ var _excluded = ["model", "style", "className"];
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  function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
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- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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  var useStyles = (0, _core.makeStyles)(function (theme) {
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@@ -85,8 +85,8 @@ var RenderedRefNameLabels = (0, _mobxReact.observer)(function (_ref) {
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- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, model.staticBlocks.map(function (block, index) {
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@@ -100,23 +100,23 @@ var RenderedRefNameLabels = (0, _mobxReact.observer)(function (_ref) {
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  var RenderedScaleBarLabels = (0, _mobxReact.observer)(function (_ref2) {
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  var model = _ref2.model;
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  var classes = useStyles();
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- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, model.staticBlocks.map(function (block, index) {
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  if (block instanceof _blockTypes.ContentBlock) {
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  if (tick.type === 'major') {
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  var x = (block.reversed ? block.end - tick.base : tick.base - block.start) / model.bpPerPx;
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  var baseNumber = (tick.base + 1).toLocaleString('en-US');
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- return /*#__PURE__*/_react["default"].createElement("div", {
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  key: tick.base,
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  style: {
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  className: classes.majorTickLabel
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@@ -126,14 +126,14 @@ var RenderedScaleBarLabels = (0, _mobxReact.observer)(function (_ref2) {
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  if (block instanceof _blockTypes.ElidedBlock) {
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  if (block instanceof _blockTypes.InterRegionPaddingBlock) {
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- return /*#__PURE__*/_react["default"].createElement(_Block.InterRegionPaddingBlock, {
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  key: block.key,
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  width: block.widthPx,
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  style: {
@@ -147,38 +147,38 @@ var RenderedScaleBarLabels = (0, _mobxReact.observer)(function (_ref2) {
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  }));
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  });
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- var ScaleBar = /*#__PURE__*/_react["default"].forwardRef(function (_ref3, ref) {
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+ var ScaleBar = /*#__PURE__*/_react.default.forwardRef(function (_ref3, ref) {
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  var model = _ref3.model,
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  style = _ref3.style,
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  className = _ref3.className,
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- other = (0, _objectWithoutProperties2["default"])(_ref3, _excluded);
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+ other = (0, _objectWithoutProperties2.default)(_ref3, _excluded);
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  var classes = useStyles();
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  var offsetLeft = model.staticBlocks.offsetPx - model.offsetPx;
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- return /*#__PURE__*/_react["default"].createElement(_core.Paper, (0, _extends2["default"])({
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  "data-resizer": "true" // used to avoid click-and-drag scrolls on trackscontainer
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  ,
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- className: (0, _clsx["default"])(classes.scaleBarContainer, className),
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+ className: (0, _clsx.default)(classes.scaleBarContainer, className),
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  variant: "outlined",
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  ref: ref,
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  style: style
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- }, other), /*#__PURE__*/_react["default"].createElement("div", {
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+ }, other), /*#__PURE__*/_react.default.createElement("div", {
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  className: classes.scaleBarZoomContainer,
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  style: {
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  transform: model.scaleFactor !== 1 ? "scaleX(".concat(model.scaleFactor, ")") : undefined
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  }
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- }, /*#__PURE__*/_react["default"].createElement("div", {
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+ }, /*#__PURE__*/_react.default.createElement("div", {
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  className: classes.scaleBar,
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  style: _objectSpread({
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  left: offsetLeft - 1,
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  width: model.staticBlocks.totalWidthPx
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  }, style)
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- }, /*#__PURE__*/_react["default"].createElement(RenderedScaleBarLabels, {
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+ }, /*#__PURE__*/_react.default.createElement(RenderedScaleBarLabels, {
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  model: model
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  model: model
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  }));
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  });
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+ exports.default = _default;
@@ -55,7 +55,7 @@ describe('ScaleBar genome view component', function () {
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  });
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  var model = session.views[0];
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- var _render = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(_ScaleBar["default"], {
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+ var _render = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_ScaleBar.default, {
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  })),
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  getByTestId = _render.getByTestId;
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  });
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  var model = session.views[0];
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  getByTestId = _render2.getByTestId;
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  });
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  var model = session.views[0];
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+ var _render3 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_ScaleBar.default, {
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  model: model
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  })),
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  queryByTestId = _render3.queryByTestId;
@@ -1,8 +1,8 @@
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- /// <reference types="react" />
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- import { LinearGenomeViewModel } from '..';
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- declare function SearchBox({ model, showHelp, }: {
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- showHelp?: boolean;
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- model: LinearGenomeViewModel;
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- }): JSX.Element;
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- declare const _default: typeof SearchBox;
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- export default _default;
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+ /// <reference types="react" />
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+ import { LinearGenomeViewModel } from '..';
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+ declare function SearchBox({ model, showHelp, }: {
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+ showHelp?: boolean;
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+ }): JSX.Element;
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+ export default _default;
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+ return new _BaseResults.default({
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@@ -103,10 +103,10 @@ function SearchBox(_ref) {
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  onSelect: handleSelectedRegion,
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- /// <reference types="react" />
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- export declare const useStyles: (props?: any) => Record<"dialogContent" | "closeButton", string>;
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- export default function SearchResultsDialog({ model, optAssemblyName, handleClose, }: {
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- model: LinearGenomeViewModel;
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- optAssemblyName?: string;
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- handleClose: () => void;
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- }): JSX.Element;
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+ import { LinearGenomeViewModel } from '../..';
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+ export declare const useStyles: (props?: any) => import("@material-ui/styles").ClassNameMap<"closeButton" | "dialogContent">;
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+ export default function SearchResultsDialog({ model, optAssemblyName, handleClose, }: {
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+ model: LinearGenomeViewModel;
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+ optAssemblyName?: string;
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+ handleClose: () => void;
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+ }): JSX.Element;
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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- exports["default"] = SearchResultsDialog;
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+ exports.default = SearchResultsDialog;
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  exports.useStyles = void 0;
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@@ -105,37 +105,37 @@ function SearchResultsDialog(_ref) {
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  return '';
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+ return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
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  open: true,
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  maxWidth: "xl",
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  onClose: handleClose
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  "data-testid": "close-resultsDialog",
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  className: classes.closeButton,
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  onClick: function onClick() {
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  handleClose();
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  }
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- }, /*#__PURE__*/_react["default"].createElement(_Close["default"], null)) : null), /*#__PURE__*/_react["default"].createElement(_core.Divider, null), /*#__PURE__*/_react["default"].createElement(_core.DialogContent, null, !((_model$searchResults = model.searchResults) !== null && _model$searchResults !== void 0 && _model$searchResults.length) ? /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "No results found for ", /*#__PURE__*/_react["default"].createElement("b", null, model.searchQuery)) : /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "Showing results for ", /*#__PURE__*/_react["default"].createElement("b", null, model.searchQuery)), /*#__PURE__*/_react["default"].createElement(_core.TableContainer, {
118
+ }, /*#__PURE__*/_react.default.createElement(_Close.default, null)) : null), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, !((_model$searchResults = model.searchResults) !== null && _model$searchResults !== void 0 && _model$searchResults.length) ? /*#__PURE__*/_react.default.createElement(_core.Typography, null, "No results found for ", /*#__PURE__*/_react.default.createElement("b", null, model.searchQuery)) : /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Showing results for ", /*#__PURE__*/_react.default.createElement("b", null, model.searchQuery)), /*#__PURE__*/_react.default.createElement(_core.TableContainer, {
119
119
  component: _core.Paper
120
- }, /*#__PURE__*/_react["default"].createElement(_core.Table, null, /*#__PURE__*/_react["default"].createElement(_core.TableHead, null, /*#__PURE__*/_react["default"].createElement(_core.TableRow, null, /*#__PURE__*/_react["default"].createElement(_core.TableCell, null, "Name"), /*#__PURE__*/_react["default"].createElement(_core.TableCell, {
120
+ }, /*#__PURE__*/_react.default.createElement(_core.Table, null, /*#__PURE__*/_react.default.createElement(_core.TableHead, null, /*#__PURE__*/_react.default.createElement(_core.TableRow, null, /*#__PURE__*/_react.default.createElement(_core.TableCell, null, "Name"), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
121
121
  align: "right"
122
- }, "Location"), /*#__PURE__*/_react["default"].createElement(_core.TableCell, {
122
+ }, "Location"), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
123
123
  align: "right"
124
- }, "Track"), /*#__PURE__*/_react["default"].createElement(_core.TableCell, {
124
+ }, "Track"), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
125
125
  align: "right"
126
- }))), /*#__PURE__*/_react["default"].createElement(_core.TableBody, null, model.searchResults.map(function (result) {
127
- return /*#__PURE__*/_react["default"].createElement(_core.TableRow, {
126
+ }))), /*#__PURE__*/_react.default.createElement(_core.TableBody, null, model.searchResults.map(function (result) {
127
+ return /*#__PURE__*/_react.default.createElement(_core.TableRow, {
128
128
  key: "".concat(result.getId())
129
- }, /*#__PURE__*/_react["default"].createElement(_core.TableCell, {
129
+ }, /*#__PURE__*/_react.default.createElement(_core.TableCell, {
130
130
  component: "th",
131
131
  scope: "row"
132
- }, result.getLabel()), /*#__PURE__*/_react["default"].createElement(_core.TableCell, {
132
+ }, result.getLabel()), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
133
133
  align: "right"
134
- }, result.getLocation()), /*#__PURE__*/_react["default"].createElement(_core.TableCell, {
134
+ }, result.getLocation()), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
135
135
  align: "right"
136
- }, getTrackName(result.getTrackId()) || 'N/A'), /*#__PURE__*/_react["default"].createElement(_core.TableCell, {
136
+ }, getTrackName(result.getTrackId()) || 'N/A'), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
137
137
  align: "right"
138
- }, /*#__PURE__*/_react["default"].createElement(_core.Button, {
138
+ }, /*#__PURE__*/_react.default.createElement(_core.Button, {
139
139
  onClick: function onClick() {
140
140
  handleClick(result.getLocation());
141
141
  var resultTrackId = result.getTrackId();
@@ -150,7 +150,7 @@ function SearchResultsDialog(_ref) {
150
150
  color: "primary",
151
151
  variant: "contained"
152
152
  }, "Go")));
153
- })))))), /*#__PURE__*/_react["default"].createElement(_core.Divider, null), /*#__PURE__*/_react["default"].createElement(_core.DialogActions, null, /*#__PURE__*/_react["default"].createElement(_core.Button, {
153
+ })))))), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
154
154
  onClick: function onClick() {
155
155
  return handleClose();
156
156
  },
@@ -1,8 +1,8 @@
1
- /// <reference types="react" />
2
- import { LinearGenomeViewModel } from '..';
3
- declare function SequenceDialog({ model, handleClose, }: {
4
- model: LinearGenomeViewModel;
5
- handleClose: () => void;
6
- }): JSX.Element;
7
- declare const _default: typeof SequenceDialog;
8
- export default _default;
1
+ /// <reference types="react" />
2
+ import { LinearGenomeViewModel } from '..';
3
+ declare function SequenceDialog({ model, handleClose, }: {
4
+ model: LinearGenomeViewModel;
5
+ handleClose: () => void;
6
+ }): JSX.Element;
7
+ declare const _default: typeof SequenceDialog;
8
+ export default _default;
@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
7
7
  Object.defineProperty(exports, "__esModule", {
8
8
  value: true
9
9
  });
10
- exports["default"] = void 0;
10
+ exports.default = void 0;
11
11
 
12
12
  var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
13
13
 
@@ -39,7 +39,7 @@ var _GetApp = _interopRequireDefault(require("@material-ui/icons/GetApp"));
39
39
 
40
40
  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
41
41
 
42
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
42
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
43
43
 
44
44
  // icons
45
45
  var useStyles = (0, _core.makeStyles)(function (theme) {
@@ -70,9 +70,9 @@ function fetchSequence(_x, _x2, _x3) {
70
70
  }
71
71
 
72
72
  function _fetchSequence() {
73
- _fetchSequence = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2(model, regions, signal) {
73
+ _fetchSequence = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(model, regions, signal) {
74
74
  var session, leftOffset, rightOffset, rpcManager, assemblyManager, assemblyName, assembly, adapterConfig, sessionId, chunks;
75
- return _regenerator["default"].wrap(function _callee2$(_context2) {
75
+ return _regenerator.default.wrap(function _callee2$(_context2) {
76
76
  while (1) {
77
77
  switch (_context2.prev = _context2.next) {
78
78
  case 0:
@@ -142,12 +142,12 @@ function SequenceDialog(_ref) {
142
142
  var session = (0, _util.getSession)(model);
143
143
 
144
144
  var _useState = (0, _react.useState)(),
145
- _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
145
+ _useState2 = (0, _slicedToArray2.default)(_useState, 2),
146
146
  error = _useState2[0],
147
147
  setError = _useState2[1];
148
148
 
149
149
  var _useState3 = (0, _react.useState)(),
150
- _useState4 = (0, _slicedToArray2["default"])(_useState3, 2),
150
+ _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
151
151
  sequence = _useState4[0],
152
152
  setSequence = _useState4[1];
153
153
 
@@ -163,9 +163,9 @@ function SequenceDialog(_ref) {
163
163
  (0, _react.useEffect)(function () {
164
164
  var active = true;
165
165
  var controller = new AbortController();
166
- (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
166
+ (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
167
167
  var chunks;
168
- return _regenerator["default"].wrap(function _callee$(_context) {
168
+ return _regenerator.default.wrap(function _callee$(_context) {
169
169
  while (1) {
170
170
  switch (_context.prev = _context.next) {
171
171
  case 0:
@@ -235,31 +235,31 @@ function SequenceDialog(_ref) {
235
235
  };
236
236
  }, [model, session, regionsSelected, setSequence]);
237
237
  var sequenceTooLarge = sequence ? sequence.length > 1000000 : false;
238
- return /*#__PURE__*/_react["default"].createElement(_core.Dialog, {
238
+ return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
239
239
  "data-testid": "sequence-dialog",
240
240
  maxWidth: "xl",
241
241
  open: true,
242
242
  onClose: handleClose,
243
243
  "aria-labelledby": "alert-dialog-title",
244
244
  "aria-describedby": "alert-dialog-description"
245
- }, /*#__PURE__*/_react["default"].createElement(_core.DialogTitle, {
245
+ }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, {
246
246
  id: "alert-dialog-title"
247
- }, "Reference sequence", handleClose ? /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
247
+ }, "Reference sequence", handleClose ? /*#__PURE__*/_react.default.createElement(_core.IconButton, {
248
248
  "data-testid": "close-seqDialog",
249
249
  className: classes.closeButton,
250
250
  onClick: function onClick() {
251
251
  handleClose();
252
252
  model.setOffsets(undefined, undefined);
253
253
  }
254
- }, /*#__PURE__*/_react["default"].createElement(_Close["default"], null)) : null), /*#__PURE__*/_react["default"].createElement(_core.Divider, null), /*#__PURE__*/_react["default"].createElement(_core.DialogContent, null, error ? /*#__PURE__*/_react["default"].createElement(_core.Typography, {
254
+ }, /*#__PURE__*/_react.default.createElement(_Close.default, null)) : null), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, error ? /*#__PURE__*/_react.default.createElement(_core.Typography, {
255
255
  color: "error"
256
- }, "".concat(error)) : null, loading && !error ? /*#__PURE__*/_react["default"].createElement(_core.Container, null, "Retrieving reference sequence...", /*#__PURE__*/_react["default"].createElement(_core.CircularProgress, {
256
+ }, "".concat(error)) : null, loading && !error ? /*#__PURE__*/_react.default.createElement(_core.Container, null, "Retrieving reference sequence...", /*#__PURE__*/_react.default.createElement(_core.CircularProgress, {
257
257
  style: {
258
258
  marginLeft: 10
259
259
  },
260
260
  size: 20,
261
261
  disableShrink: true
262
- })) : null, /*#__PURE__*/_react["default"].createElement(_core.TextField, {
262
+ })) : null, /*#__PURE__*/_react.default.createElement(_core.TextField, {
263
263
  "data-testid": "rubberband-sequence",
264
264
  variant: "outlined",
265
265
  multiline: true,
@@ -274,15 +274,15 @@ function SequenceDialog(_ref) {
274
274
  input: classes.textAreaFont
275
275
  }
276
276
  }
277
- })), /*#__PURE__*/_react["default"].createElement(_core.DialogActions, null, /*#__PURE__*/_react["default"].createElement(_core.Button, {
277
+ })), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
278
278
  onClick: function onClick() {
279
- (0, _copyToClipboard["default"])(sequence || '');
279
+ (0, _copyToClipboard.default)(sequence || '');
280
280
  session.notify('Copied to clipboard', 'success');
281
281
  },
282
282
  disabled: loading || !!error || sequenceTooLarge,
283
283
  color: "primary",
284
- startIcon: /*#__PURE__*/_react["default"].createElement(_Icons.ContentCopy, null)
285
- }, "Copy to clipboard"), /*#__PURE__*/_react["default"].createElement(_core.Button, {
284
+ startIcon: /*#__PURE__*/_react.default.createElement(_Icons.ContentCopy, null)
285
+ }, "Copy to clipboard"), /*#__PURE__*/_react.default.createElement(_core.Button, {
286
286
  onClick: function onClick() {
287
287
  var seqFastaFile = new Blob([sequence || ''], {
288
288
  type: 'text/x-fasta;charset=utf-8'
@@ -291,8 +291,8 @@ function SequenceDialog(_ref) {
291
291
  },
292
292
  disabled: loading || !!error,
293
293
  color: "primary",
294
- startIcon: /*#__PURE__*/_react["default"].createElement(_GetApp["default"], null)
295
- }, "Download FASTA"), /*#__PURE__*/_react["default"].createElement(_core.Button, {
294
+ startIcon: /*#__PURE__*/_react.default.createElement(_GetApp.default, null)
295
+ }, "Download FASTA"), /*#__PURE__*/_react.default.createElement(_core.Button, {
296
296
  onClick: handleClose,
297
297
  color: "primary",
298
298
  autoFocus: true
@@ -301,4 +301,4 @@ function SequenceDialog(_ref) {
301
301
 
302
302
  var _default = (0, _mobxReact.observer)(SequenceDialog);
303
303
 
304
- exports["default"] = _default;
304
+ exports.default = _default;
@@ -1,9 +1,9 @@
1
- /// <reference types="react" />
2
- import { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
3
- import { LinearGenomeViewModel } from '..';
4
- declare function TrackContainer({ model, track, }: {
5
- model: LinearGenomeViewModel;
6
- track: BaseTrackModel;
7
- }): JSX.Element;
8
- declare const _default: typeof TrackContainer;
9
- export default _default;
1
+ /// <reference types="react" />
2
+ import { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
3
+ import { LinearGenomeViewModel } from '..';
4
+ declare function TrackContainer({ model, track, }: {
5
+ model: LinearGenomeViewModel;
6
+ track: BaseTrackModel;
7
+ }): JSX.Element;
8
+ declare const _default: typeof TrackContainer;
9
+ export default _default;
@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
7
7
  Object.defineProperty(exports, "__esModule", {
8
8
  value: true
9
9
  });
10
- exports["default"] = void 0;
10
+ exports.default = void 0;
11
11
 
12
12
  var _react = _interopRequireWildcard(require("react"));
13
13
 
@@ -33,7 +33,7 @@ var _TrackLabel = _interopRequireDefault(require("./TrackLabel"));
33
33
 
34
34
  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
35
35
 
36
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
36
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
37
37
 
38
38
  var useStyles = (0, _styles.makeStyles)(function (theme) {
39
39
  return {
@@ -89,9 +89,9 @@ var TrackContainerLabel = (0, _mobxReact.observer)(function (_ref) {
89
89
  view = _ref.view;
90
90
  var classes = useStyles();
91
91
  var labelStyle = view.trackLabels === 'overlapping' ? classes.trackLabelOverlap : classes.trackLabelInline;
92
- return view.trackLabels !== 'hidden' ? /*#__PURE__*/_react["default"].createElement(_TrackLabel["default"], {
92
+ return view.trackLabels !== 'hidden' ? /*#__PURE__*/_react.default.createElement(_TrackLabel.default, {
93
93
  track: model,
94
- className: (0, _clsx["default"])(classes.trackLabel, labelStyle)
94
+ className: (0, _clsx.default)(classes.trackLabel, labelStyle)
95
95
  }) : null;
96
96
  });
97
97
 
@@ -126,13 +126,13 @@ function TrackContainer(_ref2) {
126
126
  var RenderingComponent = display.RenderingComponent,
127
127
  DisplayBlurb = display.DisplayBlurb;
128
128
  var dimmed = draggingTrackId !== undefined && draggingTrackId !== display.id;
129
- return /*#__PURE__*/_react["default"].createElement(_Paper["default"], {
129
+ return /*#__PURE__*/_react.default.createElement(_Paper.default, {
130
130
  className: classes.root,
131
131
  variant: "outlined"
132
- }, /*#__PURE__*/_react["default"].createElement(TrackContainerLabel, {
132
+ }, /*#__PURE__*/_react.default.createElement(TrackContainerLabel, {
133
133
  model: track,
134
134
  view: model
135
- }), /*#__PURE__*/_react["default"].createElement("div", {
135
+ }), /*#__PURE__*/_react.default.createElement("div", {
136
136
  className: classes.trackRenderingContainer,
137
137
  style: {
138
138
  height: height
@@ -144,31 +144,31 @@ function TrackContainer(_ref2) {
144
144
  onDragEnter: debouncedOnDragEnter,
145
145
  "data-testid": "trackRenderingContainer-".concat(model.id, "-").concat(trackId),
146
146
  role: "presentation"
147
- }, /*#__PURE__*/_react["default"].createElement("div", {
147
+ }, /*#__PURE__*/_react.default.createElement("div", {
148
148
  ref: ref,
149
149
  className: classes.renderingComponentContainer,
150
150
  style: {
151
151
  transform: "scaleX(".concat(model.scaleFactor, ")")
152
152
  }
153
- }, /*#__PURE__*/_react["default"].createElement(RenderingComponent, {
153
+ }, /*#__PURE__*/_react.default.createElement(RenderingComponent, {
154
154
  model: display,
155
155
  onHorizontalScroll: horizontalScroll
156
- })), DisplayBlurb ? /*#__PURE__*/_react["default"].createElement("div", {
156
+ })), DisplayBlurb ? /*#__PURE__*/_react.default.createElement("div", {
157
157
  style: {
158
158
  position: 'absolute',
159
159
  left: 0,
160
160
  top: display.height - 20
161
161
  }
162
- }, /*#__PURE__*/_react["default"].createElement(DisplayBlurb, {
162
+ }, /*#__PURE__*/_react.default.createElement(DisplayBlurb, {
163
163
  model: display
164
- })) : null), /*#__PURE__*/_react["default"].createElement("div", {
164
+ })) : null), /*#__PURE__*/_react.default.createElement("div", {
165
165
  className: classes.overlay,
166
166
  style: {
167
167
  height: display.height,
168
168
  background: dimmed ? 'rgba(0, 0, 0, 0.4)' : undefined
169
169
  },
170
170
  onDragEnter: debouncedOnDragEnter
171
- }), /*#__PURE__*/_react["default"].createElement(_ui.ResizeHandle, {
171
+ }), /*#__PURE__*/_react.default.createElement(_ui.ResizeHandle, {
172
172
  onDrag: display.resizeHeight,
173
173
  className: classes.resizeHandle
174
174
  }));
@@ -176,4 +176,4 @@ function TrackContainer(_ref2) {
176
176
 
177
177
  var _default = (0, _mobxReact.observer)(TrackContainer);
178
178
 
179
- exports["default"] = _default;
179
+ exports.default = _default;