@jbrowse/plugin-linear-genome-view 1.7.0 → 1.7.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (89) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +13 -13
  2. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +18 -18
  3. package/dist/BaseLinearDisplay/components/Block.d.ts +15 -15
  4. package/dist/BaseLinearDisplay/components/Block.js +4 -4
  5. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +12 -12
  6. package/dist/BaseLinearDisplay/components/LinearBlocks.js +11 -11
  7. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
  8. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +16 -16
  9. package/dist/BaseLinearDisplay/index.d.ts +5 -5
  10. package/dist/BaseLinearDisplay/index.js +2 -2
  11. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +227 -230
  12. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +32 -32
  13. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -1
  14. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -96
  15. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +9 -9
  16. package/dist/LinearBareDisplay/configSchema.d.ts +2 -2
  17. package/dist/LinearBareDisplay/index.d.ts +2 -2
  18. package/dist/LinearBareDisplay/model.d.ts +192 -192
  19. package/dist/LinearBareDisplay/model.js +1 -1
  20. package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -10
  21. package/dist/LinearBasicDisplay/components/SetMaxHeight.js +11 -11
  22. package/dist/LinearBasicDisplay/configSchema.d.ts +2 -2
  23. package/dist/LinearBasicDisplay/configSchema.js +1 -1
  24. package/dist/LinearBasicDisplay/index.d.ts +2 -2
  25. package/dist/LinearBasicDisplay/index.js +2 -2
  26. package/dist/LinearBasicDisplay/model.d.ts +213 -213
  27. package/dist/LinearBasicDisplay/model.js +10 -10
  28. package/dist/LinearGenomeView/components/CenterLine.d.ts +14 -14
  29. package/dist/LinearGenomeView/components/CenterLine.js +5 -5
  30. package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -6
  31. package/dist/LinearGenomeView/components/ExportSvgDialog.js +16 -16
  32. package/dist/LinearGenomeView/components/Header.d.ts +7 -7
  33. package/dist/LinearGenomeView/components/Header.js +20 -20
  34. package/dist/LinearGenomeView/components/HelpDialog.d.ts +5 -5
  35. package/dist/LinearGenomeView/components/HelpDialog.js +4 -4
  36. package/dist/LinearGenomeView/components/ImportForm.d.ts +7 -7
  37. package/dist/LinearGenomeView/components/ImportForm.js +28 -28
  38. package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +7 -7
  39. package/dist/LinearGenomeView/components/LinearGenomeView.js +15 -15
  40. package/dist/LinearGenomeView/components/LinearGenomeView.test.js +9 -9
  41. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -4
  42. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +40 -40
  43. package/dist/LinearGenomeView/components/MiniControls.d.ts +6 -6
  44. package/dist/LinearGenomeView/components/MiniControls.js +9 -9
  45. package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -22
  46. package/dist/LinearGenomeView/components/OverviewRubberBand.js +19 -19
  47. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +132 -124
  48. package/dist/LinearGenomeView/components/OverviewScaleBar.js +28 -28
  49. package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +21 -21
  50. package/dist/LinearGenomeView/components/RefNameAutocomplete.js +27 -27
  51. package/dist/LinearGenomeView/components/RubberBand.d.ts +9 -20
  52. package/dist/LinearGenomeView/components/RubberBand.js +18 -18
  53. package/dist/LinearGenomeView/components/Ruler.d.ts +27 -27
  54. package/dist/LinearGenomeView/components/Ruler.js +11 -11
  55. package/dist/LinearGenomeView/components/ScaleBar.d.ts +401 -401
  56. package/dist/LinearGenomeView/components/ScaleBar.js +19 -19
  57. package/dist/LinearGenomeView/components/ScaleBar.test.js +3 -3
  58. package/dist/LinearGenomeView/components/SearchBox.d.ts +8 -8
  59. package/dist/LinearGenomeView/components/SearchBox.js +9 -9
  60. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +8 -8
  61. package/dist/LinearGenomeView/components/SearchResultsDialog.js +15 -15
  62. package/dist/LinearGenomeView/components/SequenceDialog.d.ts +8 -8
  63. package/dist/LinearGenomeView/components/SequenceDialog.js +21 -21
  64. package/dist/LinearGenomeView/components/TrackContainer.d.ts +9 -9
  65. package/dist/LinearGenomeView/components/TrackContainer.js +14 -14
  66. package/dist/LinearGenomeView/components/TrackLabel.d.ts +44 -44
  67. package/dist/LinearGenomeView/components/TrackLabel.js +14 -14
  68. package/dist/LinearGenomeView/components/TracksContainer.d.ts +10 -10
  69. package/dist/LinearGenomeView/components/TracksContainer.js +10 -10
  70. package/dist/LinearGenomeView/components/VerticalGuides.d.ts +9 -9
  71. package/dist/LinearGenomeView/components/VerticalGuides.js +11 -11
  72. package/dist/LinearGenomeView/components/ZoomControls.d.ts +7 -7
  73. package/dist/LinearGenomeView/components/ZoomControls.js +9 -9
  74. package/dist/LinearGenomeView/components/util.d.ts +2 -2
  75. package/dist/LinearGenomeView/index.d.ts +292 -292
  76. package/dist/LinearGenomeView/index.js +35 -35
  77. package/dist/LinearGenomeView/index.test.js +19 -19
  78. package/dist/LinearGenomeView/util.d.ts +14 -14
  79. package/dist/index.d.ts +565 -565
  80. package/dist/index.js +18 -18
  81. package/package.json +5 -5
  82. package/dist/LinearBareDisplay/index.test.d.ts +0 -1
  83. package/dist/LinearGenomeView/components/LinearGenomeView.test.d.ts +0 -1
  84. package/dist/plugin-linear-genome-view.cjs.development.js +0 -8121
  85. package/dist/plugin-linear-genome-view.cjs.development.js.map +0 -1
  86. package/dist/plugin-linear-genome-view.cjs.production.min.js +0 -2
  87. package/dist/plugin-linear-genome-view.cjs.production.min.js.map +0 -1
  88. package/dist/plugin-linear-genome-view.esm.js +0 -8105
  89. package/dist/plugin-linear-genome-view.esm.js.map +0 -1
@@ -39,10 +39,10 @@ var assemblyConf = {
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  }
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  };
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  describe('<LinearGenomeView />', function () {
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- it('renders setup wizard', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
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+ it('renders setup wizard', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
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  var session, model, _render, findByText;
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- return _regenerator["default"].wrap(function _callee$(_context) {
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+ return _regenerator.default.wrap(function _callee$(_context) {
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  while (1) {
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  switch (_context.prev = _context.next) {
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  case 0:
@@ -53,7 +53,7 @@ describe('<LinearGenomeView />', function () {
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  });
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  model = session.views[0];
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  model.setWidth(800);
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- _render = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(_LinearGenomeView["default"], {
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+ _render = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_LinearGenomeView.default, {
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  model: model
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  })), findByText = _render.findByText;
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  expect(model.displayedRegions.length).toEqual(0);
@@ -78,10 +78,10 @@ describe('<LinearGenomeView />', function () {
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  }
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  }, _callee);
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  })));
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- it('renders one track, one region', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
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+ it('renders one track, one region', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
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  var session, model, _render2, container, findByText;
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- return _regenerator["default"].wrap(function _callee2$(_context2) {
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+ return _regenerator.default.wrap(function _callee2$(_context2) {
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  while (1) {
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  switch (_context2.prev = _context2.next) {
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  case 0:
@@ -121,7 +121,7 @@ describe('<LinearGenomeView />', function () {
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  });
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  model = session.views[0];
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  model.setWidth(800);
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- _render2 = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(_LinearGenomeView["default"], {
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+ _render2 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_LinearGenomeView.default, {
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  model: model
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  })), container = _render2.container, findByText = _render2.findByText;
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  _context2.next = 9;
@@ -141,10 +141,10 @@ describe('<LinearGenomeView />', function () {
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  }
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  }, _callee2);
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  })));
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- it('renders two tracks, two regions', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3() {
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+ it('renders two tracks, two regions', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
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  var session, model, _render3, container, findByText, findAllByTestId;
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- return _regenerator["default"].wrap(function _callee3$(_context3) {
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+ return _regenerator.default.wrap(function _callee3$(_context3) {
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  while (1) {
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  switch (_context3.prev = _context3.next) {
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  case 0:
@@ -207,7 +207,7 @@ describe('<LinearGenomeView />', function () {
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  });
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  model = session.views[0];
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  model.setWidth(800);
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- _render3 = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(_LinearGenomeView["default"], {
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+ _render3 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_LinearGenomeView.default, {
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  model: model
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  })), container = _render3.container, findByText = _render3.findByText, findAllByTestId = _render3.findAllByTestId;
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  _context3.next = 10;
@@ -1,4 +1,4 @@
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- import { LinearGenomeViewModel, ExportSvgOptions } from '..';
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- declare type LGV = LinearGenomeViewModel;
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- export declare function renderToSvg(model: LGV, opts: ExportSvgOptions): Promise<string>;
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- export {};
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+ import { LinearGenomeViewModel, ExportSvgOptions } from '..';
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+ declare type LGV = LinearGenomeViewModel;
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+ export declare function renderToSvg(model: LGV, opts: ExportSvgOptions): Promise<string>;
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+ export {};
@@ -35,7 +35,7 @@ var _OverviewScaleBar = require("./OverviewScaleBar");
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  function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
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- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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  function ScaleBar(_ref) {
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  var model = _ref.model,
@@ -47,25 +47,25 @@ function ScaleBar(_ref) {
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  var displayBp = (0, _util.getBpDisplayStr)(totalBp);
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  var x0 = Math.max(-offsetPx, 0);
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  var x1 = x0 + totalWidthPx;
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- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, /*#__PURE__*/_react["default"].createElement("line", {
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+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement("line", {
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  x1: x0,
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  x2: x1,
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  y1: 10,
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  y2: 10,
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  stroke: "black"
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- }), /*#__PURE__*/_react["default"].createElement("line", {
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+ }), /*#__PURE__*/_react.default.createElement("line", {
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  x1: x0,
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  x2: x0,
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  y1: 5,
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  y2: 15,
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  stroke: "black"
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- }), /*#__PURE__*/_react["default"].createElement("line", {
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+ }), /*#__PURE__*/_react.default.createElement("line", {
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  x1: x1,
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  x2: x1,
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  y1: 5,
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  y2: 15,
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  stroke: "black"
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- }), /*#__PURE__*/_react["default"].createElement("text", {
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+ }), /*#__PURE__*/_react.default.createElement("text", {
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  x: x0 + (x1 - x0) / 2,
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  y: fontSize * 2,
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  textAnchor: "middle",
@@ -81,9 +81,9 @@ function SVGRuler(_ref2) {
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  viewOffsetPx = model.offsetPx,
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  bpPerPx = model.bpPerPx;
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  var renderRuler = contentBlocks.length < 5;
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- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, /*#__PURE__*/_react["default"].createElement("defs", null, /*#__PURE__*/_react["default"].createElement("clipPath", {
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+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement("defs", null, /*#__PURE__*/_react.default.createElement("clipPath", {
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  id: "clip-ruler"
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- }, /*#__PURE__*/_react["default"].createElement("rect", {
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+ }, /*#__PURE__*/_react.default.createElement("rect", {
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  x: 0,
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  y: 0,
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  width: width,
@@ -96,22 +96,22 @@ function SVGRuler(_ref2) {
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  offsetPx = block.offsetPx,
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  refName = block.refName;
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  var offsetLeft = offsetPx - viewOffsetPx;
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- return /*#__PURE__*/_react["default"].createElement("g", {
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+ return /*#__PURE__*/_react.default.createElement("g", {
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  key: "".concat(key),
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  transform: "translate(".concat(offsetLeft, " 0)")
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- }, /*#__PURE__*/_react["default"].createElement("text", {
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+ }, /*#__PURE__*/_react.default.createElement("text", {
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  x: offsetLeft / bpPerPx,
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  y: fontSize,
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  fontSize: fontSize
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- }, refName), renderRuler ? /*#__PURE__*/_react["default"].createElement("g", {
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+ }, refName), renderRuler ? /*#__PURE__*/_react.default.createElement("g", {
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  transform: "translate(0 20)",
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  clipPath: "url(#clip-ruler)"
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- }, /*#__PURE__*/_react["default"].createElement(_Ruler["default"], {
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+ }, /*#__PURE__*/_react.default.createElement(_Ruler.default, {
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  start: start,
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  end: end,
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  bpPerPx: bpPerPx,
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  reversed: reversed
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- })) : /*#__PURE__*/_react["default"].createElement("line", {
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+ })) : /*#__PURE__*/_react.default.createElement("line", {
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  strokeWidth: 1,
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  stroke: "black",
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  x1: start / bpPerPx,
@@ -150,7 +150,7 @@ var SVGHeader = function SVGHeader(_ref3) {
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  var assemblyName = assemblyNames.length > 1 ? '' : assemblyNames[0];
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  var assembly = assemblyManager.get(assemblyName);
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- var overview = _Base1DViewModel["default"].create({
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+ var overview = _Base1DViewModel.default.create({
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  displayedRegions: JSON.parse(JSON.stringify(displayedRegions)),
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  interRegionPaddingWidth: 0,
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  minimumBlockWidth: model.minimumBlockWidth
@@ -169,39 +169,39 @@ var SVGHeader = function SVGHeader(_ref3) {
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  coord: last.reversed ? last.start : last.end
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  })) || 0;
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  var cytobandHeight = showCytobands ? cytobandHeightIfExists : 0;
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- return /*#__PURE__*/_react["default"].createElement("g", {
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+ return /*#__PURE__*/_react.default.createElement("g", {
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  id: "header"
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- }, /*#__PURE__*/_react["default"].createElement("text", {
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+ }, /*#__PURE__*/_react.default.createElement("text", {
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  x: 0,
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  y: fontSize,
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  fontSize: fontSize
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- }, assemblyName), showCytobands ? /*#__PURE__*/_react["default"].createElement("g", {
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+ }, assemblyName), showCytobands ? /*#__PURE__*/_react.default.createElement("g", {
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  transform: "translate(0 ".concat(rulerHeight, ")")
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- }, /*#__PURE__*/_react["default"].createElement(_OverviewScaleBar.Cytobands, {
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+ }, /*#__PURE__*/_react.default.createElement(_OverviewScaleBar.Cytobands, {
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  overview: overview,
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  assembly: assembly,
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  block: block
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- }), /*#__PURE__*/_react["default"].createElement("rect", {
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+ }), /*#__PURE__*/_react.default.createElement("rect", {
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  stroke: "red",
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  fill: "rgb(255,0,0,0.1)",
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  width: Math.max(lastOverviewPx - firstOverviewPx, 0.5),
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  height: _.HEADER_OVERVIEW_HEIGHT - 1,
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  x: firstOverviewPx,
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  y: 0.5
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- }), /*#__PURE__*/_react["default"].createElement("g", {
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+ }), /*#__PURE__*/_react.default.createElement("g", {
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  transform: "translate(0,".concat(_.HEADER_OVERVIEW_HEIGHT, ")")
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- }, /*#__PURE__*/_react["default"].createElement(_OverviewScaleBar.Polygon, {
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+ }, /*#__PURE__*/_react.default.createElement(_OverviewScaleBar.Polygon, {
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  overview: overview,
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  model: model,
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  useOffset: false
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- }))) : null, /*#__PURE__*/_react["default"].createElement("g", {
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+ }))) : null, /*#__PURE__*/_react.default.createElement("g", {
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  transform: "translate(0 ".concat(fontSize + cytobandHeight, ")")
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- }, /*#__PURE__*/_react["default"].createElement(ScaleBar, {
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+ }, /*#__PURE__*/_react.default.createElement(ScaleBar, {
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  model: model,
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  fontSize: fontSize
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- })), /*#__PURE__*/_react["default"].createElement("g", {
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+ })), /*#__PURE__*/_react.default.createElement("g", {
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  transform: "translate(0 ".concat(rulerHeight + cytobandHeight, ")")
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- }, /*#__PURE__*/_react["default"].createElement(SVGRuler, {
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+ }, /*#__PURE__*/_react.default.createElement(SVGRuler, {
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  model: model,
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  fontSize: fontSize,
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  width: width
@@ -215,8 +215,8 @@ var SVGRegionSeparators = function SVGRegionSeparators(_ref4) {
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  var dynamicBlocks = model.dynamicBlocks,
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  offsetPx = model.offsetPx,
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  interRegionPaddingWidth = model.interRegionPaddingWidth;
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- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, dynamicBlocks.contentBlocks.slice(1).map(function (block) {
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- return /*#__PURE__*/_react["default"].createElement("rect", {
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+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, dynamicBlocks.contentBlocks.slice(1).map(function (block) {
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+ return /*#__PURE__*/_react.default.createElement("rect", {
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  key: block.key,
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  x: block.offsetPx - offsetPx - interRegionPaddingWidth,
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  width: interRegionPaddingWidth,
@@ -233,22 +233,22 @@ function SVGTracks(_ref5) {
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  var displayResults = _ref5.displayResults,
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  model = _ref5.model,
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  offset = _ref5.offset;
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- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, displayResults.map(function (_ref6) {
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+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, displayResults.map(function (_ref6) {
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  var track = _ref6.track,
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  result = _ref6.result;
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  var current = offset;
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  var trackName = (0, _configuration.getConf)(track, 'name') || "Reference sequence (".concat((0, _configuration.readConfObject)((0, _mobxStateTree.getParent)(track.configuration), 'name'), ")");
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  var display = track.displays[0];
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  offset += display.height + paddingHeight + textHeight;
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- return /*#__PURE__*/_react["default"].createElement("g", {
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+ return /*#__PURE__*/_react.default.createElement("g", {
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  key: track.configuration.trackId,
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  transform: "translate(0 ".concat(current, ")")
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- }, /*#__PURE__*/_react["default"].createElement("text", {
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+ }, /*#__PURE__*/_react.default.createElement("text", {
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  fontSize: fontSize,
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  x: Math.max(-model.offsetPx, 0)
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- }, trackName), /*#__PURE__*/_react["default"].createElement("g", {
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+ }, trackName), /*#__PURE__*/_react.default.createElement("g", {
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  transform: "translate(0 ".concat(textHeight, ")")
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- }, result, /*#__PURE__*/_react["default"].createElement(SVGRegionSeparators, {
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+ }, result, /*#__PURE__*/_react.default.createElement(SVGRegionSeparators, {
252
252
  model: model,
253
253
  height: display.height
254
254
  })));
@@ -261,9 +261,9 @@ function renderToSvg(_x, _x2) {
261
261
  }
262
262
 
263
263
  function _renderToSvg() {
264
- _renderToSvg = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2(model, opts) {
264
+ _renderToSvg = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(model, opts) {
265
265
  var width, tracks, showCytobands, shift, offset, height, displayResults;
266
- return _regenerator["default"].wrap(function _callee2$(_context2) {
266
+ return _regenerator.default.wrap(function _callee2$(_context2) {
267
267
  while (1) {
268
268
  switch (_context2.prev = _context2.next) {
269
269
  case 0:
@@ -279,9 +279,9 @@ function _renderToSvg() {
279
279
  height = totalHeight(tracks) + offset;
280
280
  _context2.next = 8;
281
281
  return Promise.all(tracks.map( /*#__PURE__*/function () {
282
- var _ref7 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(track) {
282
+ var _ref7 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(track) {
283
283
  var display, result;
284
- return _regenerator["default"].wrap(function _callee$(_context) {
284
+ return _regenerator.default.wrap(function _callee$(_context) {
285
285
  while (1) {
286
286
  switch (_context.prev = _context.next) {
287
287
  case 0:
@@ -317,22 +317,22 @@ function _renderToSvg() {
317
317
 
318
318
  case 8:
319
319
  displayResults = _context2.sent;
320
- return _context2.abrupt("return", (0, _server.renderToStaticMarkup)( /*#__PURE__*/_react["default"].createElement("svg", {
320
+ return _context2.abrupt("return", (0, _server.renderToStaticMarkup)( /*#__PURE__*/_react.default.createElement("svg", {
321
321
  width: width,
322
322
  height: height,
323
323
  xmlns: "http://www.w3.org/2000/svg",
324
324
  xmlnsXlink: "http://www.w3.org/1999/xlink",
325
325
  viewBox: [0, 0, width + shift * 2, height].toString()
326
- }, /*#__PURE__*/_react["default"].createElement("rect", {
326
+ }, /*#__PURE__*/_react.default.createElement("rect", {
327
327
  width: width + shift * 2,
328
328
  height: height,
329
329
  fill: "white"
330
- }), /*#__PURE__*/_react["default"].createElement("g", {
330
+ }), /*#__PURE__*/_react.default.createElement("g", {
331
331
  stroke: "none",
332
332
  transform: "translate(".concat(shift, " ").concat(fontSize, ")")
333
- }, /*#__PURE__*/_react["default"].createElement(SVGHeader, {
333
+ }, /*#__PURE__*/_react.default.createElement(SVGHeader, {
334
334
  model: model
335
- }), /*#__PURE__*/_react["default"].createElement(SVGTracks, {
335
+ }), /*#__PURE__*/_react.default.createElement(SVGTracks, {
336
336
  model: model,
337
337
  displayResults: displayResults,
338
338
  offset: offset
@@ -1,6 +1,6 @@
1
- /// <reference types="react" />
2
- import { LinearGenomeViewModel } from '..';
3
- declare const MiniControls: (props: {
4
- model: LinearGenomeViewModel;
5
- }) => JSX.Element;
6
- export default MiniControls;
1
+ /// <reference types="react" />
2
+ import { LinearGenomeViewModel } from '..';
3
+ declare const MiniControls: (props: {
4
+ model: LinearGenomeViewModel;
5
+ }) => JSX.Element;
6
+ export default MiniControls;
@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
7
7
  Object.defineProperty(exports, "__esModule", {
8
8
  value: true
9
9
  });
10
- exports["default"] = void 0;
10
+ exports.default = void 0;
11
11
 
12
12
  var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
13
13
 
@@ -29,7 +29,7 @@ var _Menu = _interopRequireDefault(require("@jbrowse/core/ui/Menu"));
29
29
 
30
30
  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
31
31
 
32
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
32
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
33
33
 
34
34
  var MiniControls = (0, _mobxReact.observer)(function (props) {
35
35
  var model = props.model;
@@ -39,34 +39,34 @@ var MiniControls = (0, _mobxReact.observer)(function (props) {
39
39
  scaleFactor = model.scaleFactor;
40
40
 
41
41
  var _useState = (0, _react.useState)(),
42
- _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
42
+ _useState2 = (0, _slicedToArray2.default)(_useState, 2),
43
43
  anchorEl = _useState2[0],
44
44
  setAnchorEl = _useState2[1];
45
45
 
46
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, /*#__PURE__*/_react["default"].createElement(_Paper["default"], {
46
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_Paper.default, {
47
47
  style: {
48
48
  background: '#aaa7'
49
49
  }
50
- }, /*#__PURE__*/_react["default"].createElement(_IconButton["default"], {
50
+ }, /*#__PURE__*/_react.default.createElement(_IconButton.default, {
51
51
  color: "secondary",
52
52
  onClick: function onClick(event) {
53
53
  setAnchorEl(event.currentTarget);
54
54
  }
55
- }, /*#__PURE__*/_react["default"].createElement(_KeyboardArrowDown["default"], null)), /*#__PURE__*/_react["default"].createElement(_IconButton["default"], {
55
+ }, /*#__PURE__*/_react.default.createElement(_KeyboardArrowDown.default, null)), /*#__PURE__*/_react.default.createElement(_IconButton.default, {
56
56
  "data-testid": "zoom_out",
57
57
  onClick: function onClick() {
58
58
  model.zoom(bpPerPx * 2);
59
59
  },
60
60
  disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1,
61
61
  color: "secondary"
62
- }, /*#__PURE__*/_react["default"].createElement(_ZoomOut["default"], null)), /*#__PURE__*/_react["default"].createElement(_IconButton["default"], {
62
+ }, /*#__PURE__*/_react.default.createElement(_ZoomOut.default, null)), /*#__PURE__*/_react.default.createElement(_IconButton.default, {
63
63
  "data-testid": "zoom_in",
64
64
  onClick: function onClick() {
65
65
  model.zoom(model.bpPerPx / 2);
66
66
  },
67
67
  disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1,
68
68
  color: "secondary"
69
- }, /*#__PURE__*/_react["default"].createElement(_ZoomIn["default"], null))), /*#__PURE__*/_react["default"].createElement(_Menu["default"], {
69
+ }, /*#__PURE__*/_react.default.createElement(_ZoomIn.default, null))), /*#__PURE__*/_react.default.createElement(_Menu.default, {
70
70
  anchorEl: anchorEl,
71
71
  open: Boolean(anchorEl),
72
72
  onMenuItemClick: function onMenuItemClick(_, callback) {
@@ -80,4 +80,4 @@ var MiniControls = (0, _mobxReact.observer)(function (props) {
80
80
  }));
81
81
  });
82
82
  var _default = MiniControls;
83
- exports["default"] = _default;
83
+ exports.default = _default;
@@ -1,22 +1,22 @@
1
- import React from 'react';
2
- import ReactPropTypes from 'prop-types';
3
- import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
4
- import { LinearGenomeViewModel } from '..';
5
- declare type LGV = LinearGenomeViewModel;
6
- declare function OverviewRubberBand({ model, overview, ControlComponent, }: {
7
- model: LGV;
8
- overview: Base1DViewModel;
9
- ControlComponent?: React.ReactElement;
10
- }): JSX.Element;
11
- declare namespace OverviewRubberBand {
12
- var propTypes: {
13
- model: ReactPropTypes.Validator<any>;
14
- overview: ReactPropTypes.Validator<any>;
15
- ControlComponent: ReactPropTypes.Requireable<ReactPropTypes.ReactNodeLike>;
16
- };
17
- var defaultProps: {
18
- ControlComponent: JSX.Element;
19
- };
20
- }
21
- declare const _default: typeof OverviewRubberBand;
22
- export default _default;
1
+ import React from 'react';
2
+ import ReactPropTypes from 'prop-types';
3
+ import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
4
+ import { LinearGenomeViewModel } from '..';
5
+ declare type LGV = LinearGenomeViewModel;
6
+ declare function OverviewRubberBand({ model, overview, ControlComponent, }: {
7
+ model: LGV;
8
+ overview: Base1DViewModel;
9
+ ControlComponent?: React.ReactElement;
10
+ }): JSX.Element;
11
+ declare namespace OverviewRubberBand {
12
+ var propTypes: {
13
+ model: ReactPropTypes.Validator<any>;
14
+ overview: ReactPropTypes.Validator<any>;
15
+ ControlComponent: ReactPropTypes.Requireable<ReactPropTypes.ReactNodeLike>;
16
+ };
17
+ var defaultProps: {
18
+ ControlComponent: JSX.Element;
19
+ };
20
+ }
21
+ declare const _default: typeof OverviewRubberBand;
22
+ export default _default;
@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
7
7
  Object.defineProperty(exports, "__esModule", {
8
8
  value: true
9
9
  });
10
- exports["default"] = void 0;
10
+ exports.default = void 0;
11
11
 
12
12
  var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
13
13
 
@@ -25,7 +25,7 @@ var _ = require("..");
25
25
 
26
26
  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
27
27
 
28
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
28
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
29
29
 
30
30
  var useStyles = (0, _core.makeStyles)(function (theme) {
31
31
  var _theme$palette = theme.palette,
@@ -84,12 +84,12 @@ var HoverTooltip = (0, _mobxReact.observer)(function (_ref) {
84
84
  var cytoband = assembly === null || assembly === void 0 ? void 0 : (_assembly$cytobands = assembly.cytobands) === null || _assembly$cytobands === void 0 ? void 0 : _assembly$cytobands.find(function (f) {
85
85
  return px.coord > f.get('start') && px.coord < f.get('end') && px.refName === assembly.getCanonicalRefName(f.get('refName'));
86
86
  });
87
- return /*#__PURE__*/_react["default"].createElement(_core.Tooltip, {
87
+ return /*#__PURE__*/_react.default.createElement(_core.Tooltip, {
88
88
  open: open,
89
89
  placement: "top",
90
90
  title: [(0, _util.stringify)(px), cytoband === null || cytoband === void 0 ? void 0 : cytoband.get('name')].join(' '),
91
91
  arrow: true
92
- }, /*#__PURE__*/_react["default"].createElement("div", {
92
+ }, /*#__PURE__*/_react.default.createElement("div", {
93
93
  className: classes.guide,
94
94
  style: {
95
95
  left: guideX
@@ -101,21 +101,21 @@ function OverviewRubberBand(_ref2) {
101
101
  var model = _ref2.model,
102
102
  overview = _ref2.overview,
103
103
  _ref2$ControlComponen = _ref2.ControlComponent,
104
- ControlComponent = _ref2$ControlComponen === void 0 ? /*#__PURE__*/_react["default"].createElement("div", null) : _ref2$ControlComponen;
104
+ ControlComponent = _ref2$ControlComponen === void 0 ? /*#__PURE__*/_react.default.createElement("div", null) : _ref2$ControlComponen;
105
105
  var cytobandOffset = model.cytobandOffset;
106
106
 
107
107
  var _useState = (0, _react.useState)(),
108
- _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
108
+ _useState2 = (0, _slicedToArray2.default)(_useState, 2),
109
109
  startX = _useState2[0],
110
110
  setStartX = _useState2[1];
111
111
 
112
112
  var _useState3 = (0, _react.useState)(),
113
- _useState4 = (0, _slicedToArray2["default"])(_useState3, 2),
113
+ _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
114
114
  currentX = _useState4[0],
115
115
  setCurrentX = _useState4[1];
116
116
 
117
117
  var _useState5 = (0, _react.useState)(),
118
- _useState6 = (0, _slicedToArray2["default"])(_useState5, 2),
118
+ _useState6 = (0, _slicedToArray2.default)(_useState5, 2),
119
119
  guideX = _useState6[0],
120
120
  setGuideX = _useState6[1];
121
121
 
@@ -196,16 +196,16 @@ function OverviewRubberBand(_ref2) {
196
196
  }
197
197
 
198
198
  if (startX === undefined) {
199
- return /*#__PURE__*/_react["default"].createElement("div", {
199
+ return /*#__PURE__*/_react.default.createElement("div", {
200
200
  style: {
201
201
  position: 'relative'
202
202
  }
203
- }, guideX !== undefined ? /*#__PURE__*/_react["default"].createElement(HoverTooltip, {
203
+ }, guideX !== undefined ? /*#__PURE__*/_react.default.createElement(HoverTooltip, {
204
204
  model: model,
205
205
  open: !mouseDragging,
206
206
  overview: overview,
207
207
  guideX: guideX
208
- }) : null, /*#__PURE__*/_react["default"].createElement("div", {
208
+ }) : null, /*#__PURE__*/_react.default.createElement("div", {
209
209
  className: classes.rubberBandControl,
210
210
  role: "presentation",
211
211
  ref: controlsRef,
@@ -239,11 +239,11 @@ function OverviewRubberBand(_ref2) {
239
239
  }
240
240
  }
241
241
 
242
- return /*#__PURE__*/_react["default"].createElement("div", {
242
+ return /*#__PURE__*/_react.default.createElement("div", {
243
243
  style: {
244
244
  position: 'relative'
245
245
  }
246
- }, rubberBandRef.current ? /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, /*#__PURE__*/_react["default"].createElement(_core.Popover, {
246
+ }, rubberBandRef.current ? /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_core.Popover, {
247
247
  className: classes.popover,
248
248
  classes: {
249
249
  paper: classes.paper
@@ -260,7 +260,7 @@ function OverviewRubberBand(_ref2) {
260
260
  },
261
261
  keepMounted: true,
262
262
  disableRestoreFocus: true
263
- }, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, leftBpOffset ? (0, _util.stringify)(leftBpOffset) : '')), /*#__PURE__*/_react["default"].createElement(_core.Popover, {
263
+ }, /*#__PURE__*/_react.default.createElement(_core.Typography, null, leftBpOffset ? (0, _util.stringify)(leftBpOffset) : '')), /*#__PURE__*/_react.default.createElement(_core.Popover, {
264
264
  className: classes.popover,
265
265
  classes: {
266
266
  paper: classes.paper
@@ -277,7 +277,7 @@ function OverviewRubberBand(_ref2) {
277
277
  },
278
278
  keepMounted: true,
279
279
  disableRestoreFocus: true
280
- }, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, rightBpOffset ? (0, _util.stringify)(rightBpOffset) : ''))) : null, /*#__PURE__*/_react["default"].createElement("div", {
280
+ }, /*#__PURE__*/_react.default.createElement(_core.Typography, null, rightBpOffset ? (0, _util.stringify)(rightBpOffset) : ''))) : null, /*#__PURE__*/_react.default.createElement("div", {
281
281
  ref: rubberBandRef,
282
282
  className: classes.rubberBand,
283
283
  style: {
@@ -285,7 +285,7 @@ function OverviewRubberBand(_ref2) {
285
285
  width: Math.abs(width),
286
286
  height: _.HEADER_OVERVIEW_HEIGHT
287
287
  }
288
- }), /*#__PURE__*/_react["default"].createElement("div", {
288
+ }), /*#__PURE__*/_react.default.createElement("div", {
289
289
  "data-testid": "rubberBand_controls",
290
290
  className: classes.rubberBandControl,
291
291
  role: "presentation",
@@ -299,12 +299,12 @@ function OverviewRubberBand(_ref2) {
299
299
  OverviewRubberBand.propTypes = {
300
300
  model: _mobxReact.PropTypes.objectOrObservableObject.isRequired,
301
301
  overview: _mobxReact.PropTypes.objectOrObservableObject.isRequired,
302
- ControlComponent: _propTypes["default"].node
302
+ ControlComponent: _propTypes.default.node
303
303
  };
304
304
  OverviewRubberBand.defaultProps = {
305
- ControlComponent: /*#__PURE__*/_react["default"].createElement("div", null)
305
+ ControlComponent: /*#__PURE__*/_react.default.createElement("div", null)
306
306
  };
307
307
 
308
308
  var _default = (0, _mobxReact.observer)(OverviewRubberBand);
309
309
 
310
- exports["default"] = _default;
310
+ exports.default = _default;