@jbrowse/plugin-linear-genome-view 1.7.0 → 1.7.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (89) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +13 -13
  2. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +18 -18
  3. package/dist/BaseLinearDisplay/components/Block.d.ts +15 -15
  4. package/dist/BaseLinearDisplay/components/Block.js +4 -4
  5. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +12 -12
  6. package/dist/BaseLinearDisplay/components/LinearBlocks.js +11 -11
  7. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
  8. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +16 -16
  9. package/dist/BaseLinearDisplay/index.d.ts +5 -5
  10. package/dist/BaseLinearDisplay/index.js +2 -2
  11. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +227 -230
  12. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +32 -32
  13. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -1
  14. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -96
  15. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +9 -9
  16. package/dist/LinearBareDisplay/configSchema.d.ts +2 -2
  17. package/dist/LinearBareDisplay/index.d.ts +2 -2
  18. package/dist/LinearBareDisplay/model.d.ts +192 -192
  19. package/dist/LinearBareDisplay/model.js +1 -1
  20. package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -10
  21. package/dist/LinearBasicDisplay/components/SetMaxHeight.js +11 -11
  22. package/dist/LinearBasicDisplay/configSchema.d.ts +2 -2
  23. package/dist/LinearBasicDisplay/configSchema.js +1 -1
  24. package/dist/LinearBasicDisplay/index.d.ts +2 -2
  25. package/dist/LinearBasicDisplay/index.js +2 -2
  26. package/dist/LinearBasicDisplay/model.d.ts +213 -213
  27. package/dist/LinearBasicDisplay/model.js +10 -10
  28. package/dist/LinearGenomeView/components/CenterLine.d.ts +14 -14
  29. package/dist/LinearGenomeView/components/CenterLine.js +5 -5
  30. package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -6
  31. package/dist/LinearGenomeView/components/ExportSvgDialog.js +16 -16
  32. package/dist/LinearGenomeView/components/Header.d.ts +7 -7
  33. package/dist/LinearGenomeView/components/Header.js +20 -20
  34. package/dist/LinearGenomeView/components/HelpDialog.d.ts +5 -5
  35. package/dist/LinearGenomeView/components/HelpDialog.js +4 -4
  36. package/dist/LinearGenomeView/components/ImportForm.d.ts +7 -7
  37. package/dist/LinearGenomeView/components/ImportForm.js +28 -28
  38. package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +7 -7
  39. package/dist/LinearGenomeView/components/LinearGenomeView.js +15 -15
  40. package/dist/LinearGenomeView/components/LinearGenomeView.test.js +9 -9
  41. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -4
  42. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +40 -40
  43. package/dist/LinearGenomeView/components/MiniControls.d.ts +6 -6
  44. package/dist/LinearGenomeView/components/MiniControls.js +9 -9
  45. package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -22
  46. package/dist/LinearGenomeView/components/OverviewRubberBand.js +19 -19
  47. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +132 -124
  48. package/dist/LinearGenomeView/components/OverviewScaleBar.js +28 -28
  49. package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +21 -21
  50. package/dist/LinearGenomeView/components/RefNameAutocomplete.js +27 -27
  51. package/dist/LinearGenomeView/components/RubberBand.d.ts +9 -20
  52. package/dist/LinearGenomeView/components/RubberBand.js +18 -18
  53. package/dist/LinearGenomeView/components/Ruler.d.ts +27 -27
  54. package/dist/LinearGenomeView/components/Ruler.js +11 -11
  55. package/dist/LinearGenomeView/components/ScaleBar.d.ts +401 -401
  56. package/dist/LinearGenomeView/components/ScaleBar.js +19 -19
  57. package/dist/LinearGenomeView/components/ScaleBar.test.js +3 -3
  58. package/dist/LinearGenomeView/components/SearchBox.d.ts +8 -8
  59. package/dist/LinearGenomeView/components/SearchBox.js +9 -9
  60. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +8 -8
  61. package/dist/LinearGenomeView/components/SearchResultsDialog.js +15 -15
  62. package/dist/LinearGenomeView/components/SequenceDialog.d.ts +8 -8
  63. package/dist/LinearGenomeView/components/SequenceDialog.js +21 -21
  64. package/dist/LinearGenomeView/components/TrackContainer.d.ts +9 -9
  65. package/dist/LinearGenomeView/components/TrackContainer.js +14 -14
  66. package/dist/LinearGenomeView/components/TrackLabel.d.ts +44 -44
  67. package/dist/LinearGenomeView/components/TrackLabel.js +14 -14
  68. package/dist/LinearGenomeView/components/TracksContainer.d.ts +10 -10
  69. package/dist/LinearGenomeView/components/TracksContainer.js +10 -10
  70. package/dist/LinearGenomeView/components/VerticalGuides.d.ts +9 -9
  71. package/dist/LinearGenomeView/components/VerticalGuides.js +11 -11
  72. package/dist/LinearGenomeView/components/ZoomControls.d.ts +7 -7
  73. package/dist/LinearGenomeView/components/ZoomControls.js +9 -9
  74. package/dist/LinearGenomeView/components/util.d.ts +2 -2
  75. package/dist/LinearGenomeView/index.d.ts +292 -292
  76. package/dist/LinearGenomeView/index.js +35 -35
  77. package/dist/LinearGenomeView/index.test.js +19 -19
  78. package/dist/LinearGenomeView/util.d.ts +14 -14
  79. package/dist/index.d.ts +565 -565
  80. package/dist/index.js +18 -18
  81. package/package.json +5 -5
  82. package/dist/LinearBareDisplay/index.test.d.ts +0 -1
  83. package/dist/LinearGenomeView/components/LinearGenomeView.test.d.ts +0 -1
  84. package/dist/plugin-linear-genome-view.cjs.development.js +0 -8121
  85. package/dist/plugin-linear-genome-view.cjs.development.js.map +0 -1
  86. package/dist/plugin-linear-genome-view.cjs.production.min.js +0 -2
  87. package/dist/plugin-linear-genome-view.cjs.production.min.js.map +0 -1
  88. package/dist/plugin-linear-genome-view.esm.js +0 -8105
  89. package/dist/plugin-linear-genome-view.esm.js.map +0 -1
@@ -1,192 +1,192 @@
1
- /// <reference types="react" />
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- import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration/configurationSchema';
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- export declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
4
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
5
- type: import("mobx-state-tree").ISimpleType<string>;
6
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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- } & {
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- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
10
- key: import("mobx-state-tree").ISimpleType<string>;
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- region: import("mobx-state-tree").IModelType<{
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- refName: import("mobx-state-tree").ISimpleType<string>;
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- start: import("mobx-state-tree").ISimpleType<number>;
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- end: import("mobx-state-tree").ISimpleType<number>;
15
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- } & {
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- assemblyName: import("mobx-state-tree").ISimpleType<string>;
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- }, {
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- setRefName(newRefName: string): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
21
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
22
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
23
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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- }, {
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- renderInProgress: AbortController | undefined;
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- filled: boolean;
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- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
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- features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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- layout: any;
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- status: string;
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- error: unknown;
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- message: string | undefined;
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- maxHeightReached: boolean;
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- ReactComponent: ({ model, }: {
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- model: any;
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- }) => any;
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- renderProps: any;
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- } & {
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- doReload(): void;
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- afterAttach(): void;
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- setStatus(message: string): void;
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- setLoading(abortController: AbortController): void;
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- setMessage(messageText: string): void;
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- setRendered(props: {
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- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
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- features: Map<string, import("@jbrowse/core/util").Feature>;
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- layout: any;
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- maxHeightReached: boolean;
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- renderProps: any;
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- } | undefined): void;
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- setError(error: unknown): void;
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- reload(): void;
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- beforeDestroy(): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
55
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
56
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
57
- } & {
58
- type: import("mobx-state-tree").ISimpleType<"LinearBareDisplay">;
59
- configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
60
- }, {
61
- rendererTypeName: string;
62
- error: unknown;
63
- } & {
64
- readonly RenderingComponent: import("react").FC<{
65
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
66
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
67
- type: import("mobx-state-tree").ISimpleType<string>;
68
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
69
- }> & {
70
- rendererTypeName: string;
71
- error: unknown;
72
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
73
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
74
- type: import("mobx-state-tree").ISimpleType<string>;
75
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
76
- }, {
77
- rendererTypeName: string;
78
- error: unknown;
79
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
80
- onHorizontalScroll?: Function | undefined;
81
- blockState?: Record<string, any> | undefined;
82
- }>;
83
- readonly DisplayBlurb: import("react").FC<{
84
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
85
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
86
- type: import("mobx-state-tree").ISimpleType<string>;
87
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
88
- }> & {
89
- rendererTypeName: string;
90
- error: unknown;
91
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
92
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
93
- type: import("mobx-state-tree").ISimpleType<string>;
94
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
95
- }, {
96
- rendererTypeName: string;
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- error: unknown;
98
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
99
- }> | null;
100
- readonly adapterConfig: any;
101
- readonly parentTrack: any;
102
- renderProps(): any;
103
- readonly rendererType: any;
104
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
105
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
106
- readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
107
- regionCannotBeRendered(): undefined;
108
- } & {
109
- setError(error?: unknown): void;
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- setRpcDriverName(rpcDriverName: string): void;
111
- reload(): void;
112
- } & {
113
- currBpPerPx: number;
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- message: string;
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- featureIdUnderMouse: string | undefined;
116
- contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
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- scrollTop: number;
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- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
120
- } & {
121
- readonly blockType: "staticBlocks" | "dynamicBlocks";
122
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
123
- } & {
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- readonly renderDelay: number;
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- readonly TooltipComponent: import("react").FC<any>;
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- readonly selectedFeatureId: string | undefined;
127
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
128
- } & {
129
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
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- readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
131
- getFeatureOverlapping(blockKey: string, x: number, y: number): any;
132
- getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
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- searchFeatureByID(id: string): [number, number, number, number] | undefined;
134
- readonly currentBytesRequested: number;
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- readonly currentFeatureScreenDensity: number;
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- readonly maxFeatureScreenDensity: any;
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- readonly estimatedStatsReady: boolean;
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- readonly maxAllowableBytes: number;
139
- } & {
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- setMessage(message: string): void;
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- afterAttach(): void;
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- estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
143
- headers?: Record<string, string> | undefined;
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- signal?: AbortSignal | undefined;
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- filters?: string[] | undefined;
146
- }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
147
- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
148
- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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- clearRegionStats(): void;
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- setHeight(displayHeight: number): number;
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- resizeHeight(distance: number): number;
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- setScrollTop(scrollTop: number): void;
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- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
154
- addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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- setCurrBpPerPx(n: number): void;
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- deleteBlock(key: string): void;
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- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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- clearFeatureSelection(): void;
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- setFeatureIdUnderMouse(feature: string | undefined): void;
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- reload(): void;
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- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
162
- } & {
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- readonly regionTooLarge: boolean;
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- readonly regionTooLargeReason: string;
165
- } & {
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- reload(): Promise<void>;
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- afterAttach(): void;
168
- } & {
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- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
170
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
171
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
172
- contextMenuItems(): {
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- label: string;
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- icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
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- onClick: () => void;
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- }[];
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- renderProps(): any;
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- } & {
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- renderSvg(opts: import("../LinearGenomeView").ExportSvgOptions & {
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- overrideHeight: number;
181
- }): Promise<JSX.Element>;
182
- } & {
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- renderProps(): any;
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- readonly rendererTypeName: any;
185
- }, import("mobx-state-tree")._NotCustomized, {
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- id: string;
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- type: string;
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- rpcDriverName: string | undefined;
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- height: number;
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- userBpPerPxLimit: number | undefined;
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- userByteSizeLimit: number | undefined;
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- } & import("mobx-state-tree")._NotCustomized>;
1
+ /// <reference types="react" />
2
+ import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration/configurationSchema';
3
+ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
4
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
5
+ type: import("mobx-state-tree").ISimpleType<string>;
6
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
7
+ } & {
8
+ height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
9
+ blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
10
+ key: import("mobx-state-tree").ISimpleType<string>;
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+ region: import("mobx-state-tree").IModelType<{
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+ refName: import("mobx-state-tree").ISimpleType<string>;
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+ start: import("mobx-state-tree").ISimpleType<number>;
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+ end: import("mobx-state-tree").ISimpleType<number>;
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+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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+ } & {
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+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
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+ }, {
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+ setRefName(newRefName: string): void;
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+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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+ reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
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+ isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ }, {
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+ renderInProgress: AbortController | undefined;
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+ filled: boolean;
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+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
28
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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+ layout: any;
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+ status: string;
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+ error: unknown;
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+ message: string | undefined;
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+ maxHeightReached: boolean;
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+ ReactComponent: ({ model, }: {
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+ model: any;
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+ }) => any;
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+ renderProps: any;
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+ } & {
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+ doReload(): void;
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+ afterAttach(): void;
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+ setStatus(message: string): void;
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+ setLoading(abortController: AbortController): void;
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+ setMessage(messageText: string): void;
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+ setRendered(props: {
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+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
46
+ features: Map<string, import("@jbrowse/core/util").Feature>;
47
+ layout: any;
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+ maxHeightReached: boolean;
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+ renderProps: any;
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+ } | undefined): void;
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+ setError(error: unknown): void;
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+ reload(): void;
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+ beforeDestroy(): void;
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+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
57
+ } & {
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+ type: import("mobx-state-tree").ISimpleType<"LinearBareDisplay">;
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+ configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
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+ }, {
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+ rendererTypeName: string;
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+ error: unknown;
63
+ } & {
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+ readonly RenderingComponent: import("react").FC<{
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+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
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+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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+ type: import("mobx-state-tree").ISimpleType<string>;
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+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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+ }> & {
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+ rendererTypeName: string;
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+ error: unknown;
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+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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+ type: import("mobx-state-tree").ISimpleType<string>;
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+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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+ }, {
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+ rendererTypeName: string;
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+ error: unknown;
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+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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+ onHorizontalScroll?: Function | undefined;
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+ blockState?: Record<string, any> | undefined;
82
+ }>;
83
+ readonly DisplayBlurb: import("react").FC<{
84
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
85
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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+ type: import("mobx-state-tree").ISimpleType<string>;
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+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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+ }> & {
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+ rendererTypeName: string;
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+ error: unknown;
91
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
92
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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+ type: import("mobx-state-tree").ISimpleType<string>;
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+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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+ }, {
96
+ rendererTypeName: string;
97
+ error: unknown;
98
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
99
+ }> | null;
100
+ readonly adapterConfig: any;
101
+ readonly parentTrack: any;
102
+ renderProps(): any;
103
+ readonly rendererType: any;
104
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
105
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
106
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
107
+ regionCannotBeRendered(): undefined;
108
+ } & {
109
+ setError(error?: unknown): void;
110
+ setRpcDriverName(rpcDriverName: string): void;
111
+ reload(): void;
112
+ } & {
113
+ currBpPerPx: number;
114
+ message: string;
115
+ featureIdUnderMouse: string | undefined;
116
+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
117
+ scrollTop: number;
118
+ estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
119
+ estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
120
+ } & {
121
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
122
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
123
+ } & {
124
+ readonly renderDelay: number;
125
+ readonly TooltipComponent: import("react").FC<any>;
126
+ readonly selectedFeatureId: string | undefined;
127
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
128
+ } & {
129
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
130
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
131
+ getFeatureOverlapping(blockKey: string, x: number, y: number): any;
132
+ getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
133
+ searchFeatureByID(id: string): [number, number, number, number] | undefined;
134
+ readonly currentBytesRequested: number;
135
+ readonly currentFeatureScreenDensity: number;
136
+ readonly maxFeatureScreenDensity: any;
137
+ readonly estimatedStatsReady: boolean;
138
+ readonly maxAllowableBytes: number;
139
+ } & {
140
+ setMessage(message: string): void;
141
+ afterAttach(): void;
142
+ estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
143
+ headers?: Record<string, string> | undefined;
144
+ signal?: AbortSignal | undefined;
145
+ filters?: string[] | undefined;
146
+ }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
147
+ setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
148
+ setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
149
+ clearRegionStats(): void;
150
+ setHeight(displayHeight: number): number;
151
+ resizeHeight(distance: number): number;
152
+ setScrollTop(scrollTop: number): void;
153
+ updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
154
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
155
+ setCurrBpPerPx(n: number): void;
156
+ deleteBlock(key: string): void;
157
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
158
+ clearFeatureSelection(): void;
159
+ setFeatureIdUnderMouse(feature: string | undefined): void;
160
+ reload(): void;
161
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
162
+ } & {
163
+ readonly regionTooLarge: boolean;
164
+ readonly regionTooLargeReason: string;
165
+ } & {
166
+ reload(): Promise<void>;
167
+ afterAttach(): void;
168
+ } & {
169
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
170
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
171
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
172
+ contextMenuItems(): {
173
+ label: string;
174
+ icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
175
+ onClick: () => void;
176
+ }[];
177
+ renderProps(): any;
178
+ } & {
179
+ renderSvg(opts: import("../LinearGenomeView").ExportSvgOptions & {
180
+ overrideHeight: number;
181
+ }): Promise<JSX.Element>;
182
+ } & {
183
+ renderProps(): any;
184
+ readonly rendererTypeName: any;
185
+ }, import("mobx-state-tree")._NotCustomized, {
186
+ id: string;
187
+ type: string;
188
+ rpcDriverName: string | undefined;
189
+ height: number;
190
+ userBpPerPxLimit: number | undefined;
191
+ userByteSizeLimit: number | undefined;
192
+ } & import("mobx-state-tree")._NotCustomized>;
@@ -19,7 +19,7 @@ var _BaseLinearDisplay = require("../BaseLinearDisplay");
19
19
 
20
20
  function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
21
21
 
22
- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
22
+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
23
23
 
24
24
  function stateModelFactory(configSchema) {
25
25
  return _mobxStateTree.types.compose('LinearBareDisplay', _BaseLinearDisplay.BaseLinearDisplay, _mobxStateTree.types.model({
@@ -1,10 +1,10 @@
1
- /// <reference types="react" />
2
- declare function SetMaxHeightDlg(props: {
3
- model: {
4
- maxHeight?: number;
5
- setMaxHeight: Function;
6
- };
7
- handleClose: () => void;
8
- }): JSX.Element;
9
- declare const _default: typeof SetMaxHeightDlg;
10
- export default _default;
1
+ /// <reference types="react" />
2
+ declare function SetMaxHeightDlg(props: {
3
+ model: {
4
+ maxHeight?: number;
5
+ setMaxHeight: Function;
6
+ };
7
+ handleClose: () => void;
8
+ }): JSX.Element;
9
+ declare const _default: typeof SetMaxHeightDlg;
10
+ export default _default;
@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
7
7
  Object.defineProperty(exports, "__esModule", {
8
8
  value: true
9
9
  });
10
- exports["default"] = void 0;
10
+ exports.default = void 0;
11
11
 
12
12
  var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
13
13
 
@@ -21,7 +21,7 @@ var _Close = _interopRequireDefault(require("@material-ui/icons/Close"));
21
21
 
22
22
  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
23
23
 
24
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
24
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
25
25
 
26
26
  var useStyles = (0, _core.makeStyles)(function (theme) {
27
27
  return {
@@ -48,30 +48,30 @@ function SetMaxHeightDlg(props) {
48
48
  maxHeight = _model$maxHeight === void 0 ? '' : _model$maxHeight;
49
49
 
50
50
  var _useState = (0, _react.useState)("".concat(maxHeight)),
51
- _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
51
+ _useState2 = (0, _slicedToArray2.default)(_useState, 2),
52
52
  max = _useState2[0],
53
53
  setMax = _useState2[1];
54
54
 
55
- return /*#__PURE__*/_react["default"].createElement(_core.Dialog, {
55
+ return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
56
56
  open: true,
57
57
  onClose: handleClose,
58
58
  "aria-labelledby": "alert-dialog-title",
59
59
  "aria-describedby": "alert-dialog-description"
60
- }, /*#__PURE__*/_react["default"].createElement(_core.DialogTitle, {
60
+ }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, {
61
61
  id: "alert-dialog-title"
62
- }, "Filter options", /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
62
+ }, "Filter options", /*#__PURE__*/_react.default.createElement(_core.IconButton, {
63
63
  "aria-label": "close",
64
64
  className: classes.closeButton,
65
65
  onClick: handleClose
66
- }, /*#__PURE__*/_react["default"].createElement(_Close["default"], null))), /*#__PURE__*/_react["default"].createElement(_core.DialogContent, {
66
+ }, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement(_core.DialogContent, {
67
67
  className: classes.root
68
- }, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "Set max height for the track. For example, you can increase this if the layout says \"Max height reached\""), /*#__PURE__*/_react["default"].createElement(_core.TextField, {
68
+ }, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Set max height for the track. For example, you can increase this if the layout says \"Max height reached\""), /*#__PURE__*/_react.default.createElement(_core.TextField, {
69
69
  value: max,
70
70
  onChange: function onChange(event) {
71
71
  return setMax(event.target.value);
72
72
  },
73
73
  placeholder: "Enter max score"
74
- }), /*#__PURE__*/_react["default"].createElement(_core.DialogActions, null, /*#__PURE__*/_react["default"].createElement(_core.Button, {
74
+ }), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
75
75
  variant: "contained",
76
76
  color: "primary",
77
77
  type: "submit",
@@ -80,7 +80,7 @@ function SetMaxHeightDlg(props) {
80
80
  model.setMaxHeight(max !== '' && !Number.isNaN(+max) ? +max : undefined);
81
81
  handleClose();
82
82
  }
83
- }, "Submit"), /*#__PURE__*/_react["default"].createElement(_core.Button, {
83
+ }, "Submit"), /*#__PURE__*/_react.default.createElement(_core.Button, {
84
84
  variant: "contained",
85
85
  color: "secondary",
86
86
  onClick: function onClick() {
@@ -91,4 +91,4 @@ function SetMaxHeightDlg(props) {
91
91
 
92
92
  var _default = (0, _mobxReact.observer)(SetMaxHeightDlg);
93
93
 
94
- exports["default"] = _default;
94
+ exports.default = _default;
@@ -1,2 +1,2 @@
1
- import PluginManager from '@jbrowse/core/PluginManager';
2
- export default function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ export default function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
@@ -3,7 +3,7 @@
3
3
  Object.defineProperty(exports, "__esModule", {
4
4
  value: true
5
5
  });
6
- exports["default"] = configSchemaFactory;
6
+ exports.default = configSchemaFactory;
7
7
 
8
8
  var _configuration = require("@jbrowse/core/configuration");
9
9
 
@@ -1,2 +1,2 @@
1
- export { default as modelFactory } from './model';
2
- export { default as configSchema } from './configSchema';
1
+ export { default as modelFactory } from './model';
2
+ export { default as configSchema } from './configSchema';
@@ -8,13 +8,13 @@ Object.defineProperty(exports, "__esModule", {
8
8
  Object.defineProperty(exports, "configSchema", {
9
9
  enumerable: true,
10
10
  get: function get() {
11
- return _configSchema["default"];
11
+ return _configSchema.default;
12
12
  }
13
13
  });
14
14
  Object.defineProperty(exports, "modelFactory", {
15
15
  enumerable: true,
16
16
  get: function get() {
17
- return _model["default"];
17
+ return _model.default;
18
18
  }
19
19
  });
20
20