@jbrowse/plugin-linear-genome-view 1.7.0 → 1.7.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (89) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +13 -13
  2. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +18 -18
  3. package/dist/BaseLinearDisplay/components/Block.d.ts +15 -15
  4. package/dist/BaseLinearDisplay/components/Block.js +4 -4
  5. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +12 -12
  6. package/dist/BaseLinearDisplay/components/LinearBlocks.js +11 -11
  7. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
  8. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +16 -16
  9. package/dist/BaseLinearDisplay/index.d.ts +5 -5
  10. package/dist/BaseLinearDisplay/index.js +2 -2
  11. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +227 -230
  12. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +32 -32
  13. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -1
  14. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -96
  15. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +9 -9
  16. package/dist/LinearBareDisplay/configSchema.d.ts +2 -2
  17. package/dist/LinearBareDisplay/index.d.ts +2 -2
  18. package/dist/LinearBareDisplay/model.d.ts +192 -192
  19. package/dist/LinearBareDisplay/model.js +1 -1
  20. package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -10
  21. package/dist/LinearBasicDisplay/components/SetMaxHeight.js +11 -11
  22. package/dist/LinearBasicDisplay/configSchema.d.ts +2 -2
  23. package/dist/LinearBasicDisplay/configSchema.js +1 -1
  24. package/dist/LinearBasicDisplay/index.d.ts +2 -2
  25. package/dist/LinearBasicDisplay/index.js +2 -2
  26. package/dist/LinearBasicDisplay/model.d.ts +213 -213
  27. package/dist/LinearBasicDisplay/model.js +10 -10
  28. package/dist/LinearGenomeView/components/CenterLine.d.ts +14 -14
  29. package/dist/LinearGenomeView/components/CenterLine.js +5 -5
  30. package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -6
  31. package/dist/LinearGenomeView/components/ExportSvgDialog.js +16 -16
  32. package/dist/LinearGenomeView/components/Header.d.ts +7 -7
  33. package/dist/LinearGenomeView/components/Header.js +20 -20
  34. package/dist/LinearGenomeView/components/HelpDialog.d.ts +5 -5
  35. package/dist/LinearGenomeView/components/HelpDialog.js +4 -4
  36. package/dist/LinearGenomeView/components/ImportForm.d.ts +7 -7
  37. package/dist/LinearGenomeView/components/ImportForm.js +28 -28
  38. package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +7 -7
  39. package/dist/LinearGenomeView/components/LinearGenomeView.js +15 -15
  40. package/dist/LinearGenomeView/components/LinearGenomeView.test.js +9 -9
  41. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -4
  42. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +40 -40
  43. package/dist/LinearGenomeView/components/MiniControls.d.ts +6 -6
  44. package/dist/LinearGenomeView/components/MiniControls.js +9 -9
  45. package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -22
  46. package/dist/LinearGenomeView/components/OverviewRubberBand.js +19 -19
  47. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +132 -124
  48. package/dist/LinearGenomeView/components/OverviewScaleBar.js +28 -28
  49. package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +21 -21
  50. package/dist/LinearGenomeView/components/RefNameAutocomplete.js +27 -27
  51. package/dist/LinearGenomeView/components/RubberBand.d.ts +9 -20
  52. package/dist/LinearGenomeView/components/RubberBand.js +18 -18
  53. package/dist/LinearGenomeView/components/Ruler.d.ts +27 -27
  54. package/dist/LinearGenomeView/components/Ruler.js +11 -11
  55. package/dist/LinearGenomeView/components/ScaleBar.d.ts +401 -401
  56. package/dist/LinearGenomeView/components/ScaleBar.js +19 -19
  57. package/dist/LinearGenomeView/components/ScaleBar.test.js +3 -3
  58. package/dist/LinearGenomeView/components/SearchBox.d.ts +8 -8
  59. package/dist/LinearGenomeView/components/SearchBox.js +9 -9
  60. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +8 -8
  61. package/dist/LinearGenomeView/components/SearchResultsDialog.js +15 -15
  62. package/dist/LinearGenomeView/components/SequenceDialog.d.ts +8 -8
  63. package/dist/LinearGenomeView/components/SequenceDialog.js +21 -21
  64. package/dist/LinearGenomeView/components/TrackContainer.d.ts +9 -9
  65. package/dist/LinearGenomeView/components/TrackContainer.js +14 -14
  66. package/dist/LinearGenomeView/components/TrackLabel.d.ts +44 -44
  67. package/dist/LinearGenomeView/components/TrackLabel.js +14 -14
  68. package/dist/LinearGenomeView/components/TracksContainer.d.ts +10 -10
  69. package/dist/LinearGenomeView/components/TracksContainer.js +10 -10
  70. package/dist/LinearGenomeView/components/VerticalGuides.d.ts +9 -9
  71. package/dist/LinearGenomeView/components/VerticalGuides.js +11 -11
  72. package/dist/LinearGenomeView/components/ZoomControls.d.ts +7 -7
  73. package/dist/LinearGenomeView/components/ZoomControls.js +9 -9
  74. package/dist/LinearGenomeView/components/util.d.ts +2 -2
  75. package/dist/LinearGenomeView/index.d.ts +292 -292
  76. package/dist/LinearGenomeView/index.js +35 -35
  77. package/dist/LinearGenomeView/index.test.js +19 -19
  78. package/dist/LinearGenomeView/util.d.ts +14 -14
  79. package/dist/index.d.ts +565 -565
  80. package/dist/index.js +18 -18
  81. package/package.json +5 -5
  82. package/dist/LinearBareDisplay/index.test.d.ts +0 -1
  83. package/dist/LinearGenomeView/components/LinearGenomeView.test.d.ts +0 -1
  84. package/dist/plugin-linear-genome-view.cjs.development.js +0 -8121
  85. package/dist/plugin-linear-genome-view.cjs.development.js.map +0 -1
  86. package/dist/plugin-linear-genome-view.cjs.production.min.js +0 -2
  87. package/dist/plugin-linear-genome-view.cjs.production.min.js.map +0 -1
  88. package/dist/plugin-linear-genome-view.esm.js +0 -8105
  89. package/dist/plugin-linear-genome-view.esm.js.map +0 -1
package/dist/index.js CHANGED
@@ -37,7 +37,7 @@ Object.defineProperty(exports, "baseLinearDisplayConfigSchema", {
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  return _BaseLinearDisplay.baseLinearDisplayConfigSchema;
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  }
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  Object.defineProperty(exports, "linearBareDisplayConfigSchemaFactory", {
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  enumerable: true,
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  get: function get() {
@@ -111,29 +111,29 @@ var _LinearBasicDisplay = require("./LinearBasicDisplay");
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  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
114
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
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+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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  function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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  var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
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- (0, _inherits2["default"])(LinearGenomeViewPlugin, _Plugin);
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+ (0, _inherits2.default)(LinearGenomeViewPlugin, _Plugin);
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  var _super = _createSuper(LinearGenomeViewPlugin);
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124
 
125
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  function LinearGenomeViewPlugin() {
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  var _this;
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- (0, _classCallCheck2["default"])(this, LinearGenomeViewPlugin);
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+ (0, _classCallCheck2.default)(this, LinearGenomeViewPlugin);
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130
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  for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
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  args[_key] = arguments[_key];
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  }
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  _this = _super.call.apply(_super, [this].concat(args));
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- (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "name", 'LinearGenomeViewPlugin');
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- (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "exports", {
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'LinearGenomeViewPlugin');
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "exports", {
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  BaseLinearDisplayComponent: _BaseLinearDisplay.BaseLinearDisplayComponent,
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  BaseLinearDisplay: _BaseLinearDisplay.BaseLinearDisplay,
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  baseLinearDisplayConfigSchema: _BaseLinearDisplay.baseLinearDisplayConfigSchema
@@ -141,7 +141,7 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
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  return _this;
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  }
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144
- (0, _createClass2["default"])(LinearGenomeViewPlugin, [{
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+ (0, _createClass2.default)(LinearGenomeViewPlugin, [{
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  key: "install",
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  value: function install(pluginManager) {
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  pluginManager.addTrackType(function () {
@@ -149,7 +149,7 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
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  baseConfiguration: (0, _models.createBaseTrackConfig)(pluginManager),
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  explicitIdentifier: 'trackId'
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  });
152
- return new _TrackType["default"]({
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+ return new _TrackType.default({
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  name: 'FeatureTrack',
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  configSchema: configSchema,
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  stateModel: (0, _models.createBaseTrackModel)(pluginManager, 'FeatureTrack', configSchema)
@@ -160,7 +160,7 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
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  baseConfiguration: (0, _models.createBaseTrackConfig)(pluginManager),
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  explicitIdentifier: 'trackId'
162
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  });
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- return new _TrackType["default"]({
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+ return new _TrackType.default({
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  name: 'BasicTrack',
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  configSchema: configSchema,
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  stateModel: (0, _models.createBaseTrackModel)(pluginManager, 'BasicTrack', configSchema)
@@ -168,7 +168,7 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
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  });
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  pluginManager.addDisplayType(function () {
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  var configSchema = (0, _LinearBareDisplay.configSchemaFactory)(pluginManager);
171
- return new _DisplayType["default"]({
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+ return new _DisplayType.default({
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  name: 'LinearBareDisplay',
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  configSchema: configSchema,
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  stateModel: (0, _LinearBareDisplay.stateModelFactory)(configSchema),
@@ -179,7 +179,7 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
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  });
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  pluginManager.addDisplayType(function () {
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  var configSchema = (0, _LinearBasicDisplay.configSchema)(pluginManager);
182
- return new _DisplayType["default"]({
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+ return new _DisplayType.default({
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  name: 'LinearBasicDisplay',
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  configSchema: configSchema,
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  stateModel: (0, _LinearBasicDisplay.modelFactory)(configSchema),
@@ -189,7 +189,7 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
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  });
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  });
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  pluginManager.addViewType(function () {
192
- return new _ViewType["default"]({
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+ return new _ViewType.default({
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  name: 'LinearGenomeView',
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  stateModel: (0, _LinearGenomeView.stateModelFactory)(pluginManager),
195
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  ReactComponent: /*#__PURE__*/(0, _react.lazy)(function () {
@@ -203,10 +203,10 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
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  /*#__PURE__*/
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  // @ts-ignore
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  function () {
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- var _ref2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(_ref) {
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+ var _ref2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(_ref) {
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  var session, assembly, loc, _ref$tracks, tracks, assemblyManager, view, asm, idsNotFound;
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- return _regenerator["default"].wrap(function _callee$(_context) {
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+ return _regenerator.default.wrap(function _callee$(_context) {
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  while (1) {
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  switch (_context.prev = _context.next) {
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  case 0:
@@ -281,7 +281,7 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
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  if ((0, _util.isAbstractMenuManager)(pluginManager.rootModel)) {
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  pluginManager.rootModel.appendToSubMenu(['Add'], {
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  label: 'Linear genome view',
284
- icon: _LineStyle["default"],
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+ icon: _LineStyle.default,
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  onClick: function onClick(session) {
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  session.addView('LinearGenomeView', {});
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  }
@@ -290,6 +290,6 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
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  }
291
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  }]);
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  return LinearGenomeViewPlugin;
293
- }(_Plugin2["default"]);
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+ }(_Plugin2.default);
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295
- exports["default"] = LinearGenomeViewPlugin;
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+ exports.default = LinearGenomeViewPlugin;
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
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2
  "name": "@jbrowse/plugin-linear-genome-view",
3
- "version": "1.7.0",
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+ "version": "1.7.4",
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  "description": "JBrowse 2 linear genome view",
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  "keywords": [
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  "jbrowse",
@@ -29,17 +29,17 @@
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  "prepack": "yarn build; yarn useDist",
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  "postpack": "yarn useSrc",
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  "useDist": "node ../../scripts/useDist.js",
32
- "useSrc": "node ../../scripts/useSrc.js"
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+ "useSrc": "node ../../scripts/useSrc.js",
33
+ "postbuild": "tsc --build tsconfig.build.json"
33
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  },
34
35
  "dependencies": {
36
+ "@babel/runtime": "^7.17.9",
35
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  "@material-ui/icons": "^4.9.1",
36
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  "@popperjs/core": "^2.11.0",
37
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  "clone": "^2.1.2",
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  "clsx": "^1.0.4",
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  "copy-to-clipboard": "^3.3.1",
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  "file-saver": "^2.0.0",
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- "is-object": "^1.0.1",
42
- "json-stable-stringify": "^1.0.1",
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  "normalize-wheel": "^1.0.1",
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  "react-popper": "^2.0.0"
45
45
  },
@@ -57,5 +57,5 @@
57
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  "publishConfig": {
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  "access": "public"
59
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  },
60
- "gitHead": "cc13844074d11881d211342a6a7eea113561b70b"
60
+ "gitHead": "0a3e0c58055bbab8e3ab0270c139291b96eff403"
61
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  }
@@ -1 +0,0 @@
1
- export {};