@jbrowse/core 4.3.0 → 5.0.0-beta.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1140) hide show
  1. package/README.md +822 -0
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +13 -3
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +33 -22
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +8 -3
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +117 -19
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -8
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -4
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -1
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -2
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +1 -1
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -4
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +1 -1
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +12 -5
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +28 -17
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -1
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -40
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +6 -4
  19. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +46 -30
  20. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +20 -0
  21. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +66 -0
  22. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -1
  23. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -2
  24. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -0
  25. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +17 -0
  26. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +1 -1
  27. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +3 -9
  28. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +3 -2
  29. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +3 -3
  30. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
  31. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +7 -14
  32. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +2 -1
  33. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +19 -13
  34. package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +5 -4
  35. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +8 -1
  36. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +32 -10
  37. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +18 -0
  38. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +10 -0
  39. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +7 -4
  40. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +62 -24
  41. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +10 -5
  42. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +64 -41
  43. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +1 -1
  44. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +17 -8
  45. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +6 -0
  46. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +19 -0
  47. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +5 -4
  48. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +15 -18
  49. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +1 -1
  50. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +33 -17
  51. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +3 -3
  52. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +7 -3
  53. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +11 -0
  54. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +29 -0
  55. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -1
  56. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -6
  57. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +18 -6
  58. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +11 -29
  59. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +9 -2
  60. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +63 -58
  61. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +7 -3
  62. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +38 -51
  63. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -1
  64. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +19 -27
  65. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +6 -0
  66. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +18 -0
  67. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +12 -0
  68. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +97 -0
  69. package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -1
  70. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +50 -63
  71. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +62 -59
  72. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.d.ts +21 -0
  73. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.js +24 -0
  74. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +5 -3
  75. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +93 -75
  76. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -1
  77. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +4 -11
  78. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +5 -2
  79. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +21 -48
  80. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.d.ts +8 -0
  81. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.js +20 -0
  82. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +6 -3
  83. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +33 -13
  84. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +7 -4
  85. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +67 -11
  86. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.d.ts +14 -0
  87. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.js +42 -0
  88. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +1 -1
  89. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +7 -7
  90. package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -1
  91. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +9 -9
  92. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +28 -44
  93. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.d.ts +23 -0
  94. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.js +31 -0
  95. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +90 -1
  96. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +145 -23
  97. package/esm/BaseFeatureWidget/configSchema.js +1 -1
  98. package/esm/BaseFeatureWidget/formatDetails.d.ts +38 -0
  99. package/esm/BaseFeatureWidget/formatDetails.js +103 -0
  100. package/esm/BaseFeatureWidget/index.d.ts +3 -1
  101. package/esm/BaseFeatureWidget/index.js +2 -2
  102. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +80 -62
  103. package/esm/BaseFeatureWidget/stateModelFactory.js +128 -29
  104. package/esm/BaseFeatureWidget/types.d.ts +4 -3
  105. package/esm/BaseFeatureWidget/util.d.ts +4 -29
  106. package/esm/BaseFeatureWidget/util.js +20 -84
  107. package/esm/CorePlugin.js +11 -6
  108. package/esm/PhasedScheduler.d.ts +4 -2
  109. package/esm/PhasedScheduler.js +18 -2
  110. package/esm/Plugin.d.ts +6 -1
  111. package/esm/Plugin.js +7 -0
  112. package/esm/PluginLoader.d.ts +41 -40
  113. package/esm/PluginLoader.js +206 -78
  114. package/esm/PluginManager.d.ts +421 -55
  115. package/esm/PluginManager.js +461 -89
  116. package/esm/ReExports/BaseFeatureDetails.js +7 -6
  117. package/esm/ReExports/MuiDataGridReExports.d.ts +2 -2
  118. package/esm/ReExports/MuiDataGridReExports.js +58 -130
  119. package/esm/ReExports/MuiReExports.d.ts +3 -134
  120. package/esm/ReExports/MuiReExports.js +43 -16
  121. package/esm/ReExports/MuiStylesReExports.d.ts +66 -0
  122. package/esm/ReExports/MuiStylesReExports.js +55 -0
  123. package/esm/ReExports/index.js +1 -1
  124. package/esm/ReExports/lazify.d.ts +2 -2
  125. package/esm/ReExports/lazify.js +16 -3
  126. package/esm/ReExports/list.js +54 -229
  127. package/esm/ReExports/modules.js +62 -93
  128. package/esm/ReExports/muiComponentNames.d.ts +18 -0
  129. package/esm/ReExports/muiComponentNames.js +130 -0
  130. package/esm/ReExports/publicUtil.d.ts +1 -0
  131. package/esm/ReExports/publicUtil.js +28 -0
  132. package/esm/ReExports/registry.d.ts +2 -0
  133. package/esm/ReExports/registry.js +28 -0
  134. package/esm/ReExports/sharedModules.d.ts +96 -0
  135. package/esm/ReExports/sharedModules.js +59 -0
  136. package/esm/ReExports/uiStub.d.ts +1 -0
  137. package/esm/ReExports/uiStub.js +13 -0
  138. package/esm/ReExports/workerModules.d.ts +2 -0
  139. package/esm/ReExports/workerModules.js +10 -0
  140. package/esm/TextSearch/BaseResults.d.ts +20 -21
  141. package/esm/TextSearch/BaseResults.js +8 -33
  142. package/esm/TextSearch/TextSearchManager.d.ts +14 -34
  143. package/esm/TextSearch/TextSearchManager.js +87 -34
  144. package/esm/assemblyManager/assembly.d.ts +307 -34
  145. package/esm/assemblyManager/assembly.js +551 -262
  146. package/esm/assemblyManager/assemblyAdapters.d.ts +12 -0
  147. package/esm/assemblyManager/assemblyAdapters.js +18 -0
  148. package/esm/assemblyManager/assemblyConfigSchema.d.ts +192 -17
  149. package/esm/assemblyManager/assemblyConfigSchema.js +213 -19
  150. package/esm/assemblyManager/assemblyManager.d.ts +711 -303
  151. package/esm/assemblyManager/assemblyManager.js +351 -46
  152. package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +32 -0
  153. package/esm/assemblyManager/expandAssemblyConfigShorthand.js +85 -0
  154. package/esm/assemblyManager/geneticCodes.d.ts +21 -0
  155. package/esm/assemblyManager/geneticCodes.js +47 -0
  156. package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +9 -0
  157. package/esm/assemblyManager/getSequenceAdapterConfig.js +12 -0
  158. package/esm/assemblyManager/index.d.ts +1 -1
  159. package/esm/assemblyManager/index.js +2 -2
  160. package/esm/assemblyManager/loadRefNameMap.d.ts +5 -0
  161. package/esm/assemblyManager/loadRefNameMap.js +80 -0
  162. package/esm/assemblyManager/refNameColors.d.ts +1 -0
  163. package/esm/assemblyManager/refNameColors.js +32 -0
  164. package/esm/assemblyManager/refNameMaps.d.ts +26 -0
  165. package/esm/assemblyManager/refNameMaps.js +87 -0
  166. package/esm/assemblyManager/refNameMismatch.d.ts +54 -0
  167. package/esm/assemblyManager/refNameMismatch.js +66 -0
  168. package/esm/checkPlugins.d.ts +11 -0
  169. package/esm/checkPlugins.js +77 -0
  170. package/esm/configuration/configurationSchema.d.ts +122 -20
  171. package/esm/configuration/configurationSchema.js +374 -140
  172. package/esm/configuration/configurationSlot.d.ts +283 -30
  173. package/esm/configuration/configurationSlot.js +205 -226
  174. package/esm/configuration/formatAboutConfigSchema.d.ts +55 -0
  175. package/esm/configuration/formatAboutConfigSchema.js +58 -0
  176. package/esm/configuration/formatDetailsConfigSchema.d.ts +80 -0
  177. package/esm/configuration/formatDetailsConfigSchema.js +90 -0
  178. package/esm/configuration/fullConfSnapshot.d.ts +28 -0
  179. package/esm/configuration/fullConfSnapshot.js +66 -0
  180. package/esm/configuration/getConf.d.ts +88 -0
  181. package/esm/configuration/getConf.js +74 -0
  182. package/esm/configuration/index.d.ts +19 -3
  183. package/esm/configuration/index.js +19 -2
  184. package/esm/configuration/mergeFormatCallbacks.d.ts +15 -0
  185. package/esm/configuration/mergeFormatCallbacks.js +24 -0
  186. package/esm/configuration/promotableDefaults.d.ts +199 -0
  187. package/esm/configuration/promotableDefaults.js +332 -0
  188. package/esm/configuration/promotablePin.d.ts +55 -0
  189. package/esm/configuration/promotableResolve.d.ts +108 -0
  190. package/esm/configuration/promotableResolve.js +117 -0
  191. package/esm/configuration/promotableSlots.d.ts +12 -0
  192. package/esm/configuration/promotableSlots.js +45 -0
  193. package/esm/configuration/readConfObject.d.ts +56 -0
  194. package/esm/configuration/readConfObject.js +161 -0
  195. package/esm/configuration/schemaRegistry.d.ts +35 -0
  196. package/esm/configuration/schemaRegistry.js +50 -0
  197. package/esm/configuration/schemaTypes.d.ts +23 -0
  198. package/esm/configuration/schemaTypes.js +94 -0
  199. package/esm/configuration/slotFacade.d.ts +82 -0
  200. package/esm/configuration/slotFacade.js +89 -0
  201. package/esm/configuration/slotShape.d.ts +12 -0
  202. package/esm/configuration/slotShape.js +84 -0
  203. package/esm/configuration/slotValueUtils.d.ts +17 -0
  204. package/esm/configuration/slotValueUtils.js +25 -0
  205. package/esm/configuration/tabixIndexFields.d.ts +44 -0
  206. package/esm/configuration/tabixIndexFields.js +45 -0
  207. package/esm/configuration/tabixShorthand.d.ts +34 -0
  208. package/esm/configuration/tabixShorthand.js +45 -0
  209. package/esm/configuration/types.d.ts +170 -7
  210. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +24 -10
  211. package/esm/data_adapters/BaseAdapter/BaseAdapter.js +23 -15
  212. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +132 -7
  213. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +136 -25
  214. package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +1 -0
  215. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +13 -5
  216. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +9 -7
  217. package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +2 -1
  218. package/esm/data_adapters/BaseAdapter/CytobandAdapter.d.ts +7 -0
  219. package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +2 -1
  220. package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +29 -0
  221. package/esm/data_adapters/BaseAdapter/featureDensity.js +17 -0
  222. package/esm/data_adapters/BaseAdapter/getAdapterId.d.ts +2 -0
  223. package/esm/data_adapters/BaseAdapter/getAdapterId.js +9 -0
  224. package/esm/data_adapters/BaseAdapter/index.d.ts +7 -4
  225. package/esm/data_adapters/BaseAdapter/index.js +6 -5
  226. package/esm/data_adapters/BaseAdapter/stats.d.ts +37 -5
  227. package/esm/data_adapters/BaseAdapter/stats.js +89 -24
  228. package/esm/data_adapters/BaseAdapter/types.d.ts +11 -8
  229. package/esm/data_adapters/BaseAdapter/types.js +1 -0
  230. package/esm/data_adapters/BaseAdapter/util.d.ts +5 -1
  231. package/esm/data_adapters/BaseAdapter/util.js +14 -3
  232. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +1 -1
  233. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +4 -4
  234. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +36 -4
  235. package/esm/data_adapters/CytobandAdapter/configSchema.js +46 -2
  236. package/esm/data_adapters/CytobandAdapter/index.js +3 -3
  237. package/esm/data_adapters/adapterSessionRefcount.d.ts +61 -0
  238. package/esm/data_adapters/adapterSessionRefcount.js +96 -0
  239. package/esm/data_adapters/dataAdapterCache.d.ts +35 -1
  240. package/esm/data_adapters/dataAdapterCache.js +62 -22
  241. package/esm/data_adapters/getFeatureAdapter.d.ts +22 -0
  242. package/esm/data_adapters/getFeatureAdapter.js +27 -0
  243. package/esm/data_adapters/getSequenceSubAdapter.d.ts +21 -0
  244. package/esm/data_adapters/getSequenceSubAdapter.js +44 -0
  245. package/esm/pluggableElementTypes/AdapterType.d.ts +52 -2
  246. package/esm/pluggableElementTypes/AdapterType.js +44 -5
  247. package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +6 -1
  248. package/esm/pluggableElementTypes/AddTrackWorkflowType.js +3 -1
  249. package/esm/pluggableElementTypes/ConnectionType.d.ts +5 -5
  250. package/esm/pluggableElementTypes/ConnectionType.js +1 -1
  251. package/esm/pluggableElementTypes/DisplayType.d.ts +19 -10
  252. package/esm/pluggableElementTypes/DisplayType.js +53 -5
  253. package/esm/pluggableElementTypes/InternetAccountType.js +1 -1
  254. package/esm/pluggableElementTypes/PluggableElementBase.d.ts +13 -0
  255. package/esm/pluggableElementTypes/PluggableElementBase.js +13 -0
  256. package/esm/pluggableElementTypes/RpcMethodType.d.ts +132 -12
  257. package/esm/pluggableElementTypes/RpcMethodType.js +263 -98
  258. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +19 -9
  259. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +26 -20
  260. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.d.ts +5 -0
  261. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.js +18 -0
  262. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.d.ts +5 -0
  263. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.js +10 -0
  264. package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +3 -3
  265. package/esm/pluggableElementTypes/TextSearchAdapterType.js +3 -1
  266. package/esm/pluggableElementTypes/TrackType.d.ts +2 -1
  267. package/esm/pluggableElementTypes/TrackType.js +1 -1
  268. package/esm/pluggableElementTypes/ViewType.d.ts +27 -3
  269. package/esm/pluggableElementTypes/ViewType.js +84 -4
  270. package/esm/pluggableElementTypes/WidgetType.d.ts +2 -2
  271. package/esm/pluggableElementTypes/WidgetType.js +1 -1
  272. package/esm/pluggableElementTypes/addMenuItems.d.ts +87 -0
  273. package/esm/pluggableElementTypes/addMenuItems.js +82 -0
  274. package/esm/pluggableElementTypes/extendElementType.d.ts +30 -0
  275. package/esm/pluggableElementTypes/extendElementType.js +73 -0
  276. package/esm/pluggableElementTypes/index.d.ts +7 -7
  277. package/esm/pluggableElementTypes/index.js +24 -14
  278. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +70 -15
  279. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +90 -10
  280. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +646 -84
  281. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +241 -60
  282. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +216 -35
  283. package/esm/pluggableElementTypes/models/BaseTrackModel.js +365 -83
  284. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +216 -16
  285. package/esm/pluggableElementTypes/models/BaseViewModel.js +150 -16
  286. package/esm/pluggableElementTypes/models/HighlightsMixin.d.ts +51 -0
  287. package/esm/pluggableElementTypes/models/HighlightsMixin.js +78 -0
  288. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +163 -29
  289. package/esm/pluggableElementTypes/models/InternetAccountModel.js +218 -48
  290. package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +177 -0
  291. package/esm/pluggableElementTypes/models/assertDisplayContract.js +239 -0
  292. package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +22 -8
  293. package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -2
  294. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +39 -20
  295. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +23 -2
  296. package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +181 -65
  297. package/esm/pluggableElementTypes/models/baseTrackConfig.js +191 -89
  298. package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +3 -8
  299. package/esm/pluggableElementTypes/models/components/SaveTrackData.js +113 -139
  300. package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +55 -0
  301. package/esm/pluggableElementTypes/models/components/fetchTrackData.js +83 -0
  302. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +40 -0
  303. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +115 -0
  304. package/esm/pluggableElementTypes/models/index.d.ts +6 -3
  305. package/esm/pluggableElementTypes/models/index.js +10 -8
  306. package/esm/pluggableElementTypes/models/migrateTrackConfig.d.ts +34 -0
  307. package/esm/pluggableElementTypes/models/migrateTrackConfig.js +54 -0
  308. package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +75 -7
  309. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +9 -3
  310. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +153 -103
  311. package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +6 -1
  312. package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +70 -74
  313. package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +9 -1
  314. package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.d.ts +21 -0
  315. package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.js +51 -0
  316. package/esm/pluggableElementTypes/models/uriMatchesDomains.d.ts +29 -0
  317. package/esm/pluggableElementTypes/models/uriMatchesDomains.js +62 -0
  318. package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.d.ts +5 -4
  319. package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.js +20 -10
  320. package/esm/pluginDefinitions.d.ts +198 -0
  321. package/esm/pluginDefinitions.js +220 -0
  322. package/esm/rpc/BaseRpcDriver.d.ts +27 -35
  323. package/esm/rpc/BaseRpcDriver.js +74 -107
  324. package/esm/rpc/MainThreadRpcDriver.d.ts +9 -10
  325. package/esm/rpc/MainThreadRpcDriver.js +18 -29
  326. package/esm/rpc/RpcClient.d.ts +38 -0
  327. package/esm/rpc/RpcClient.js +154 -0
  328. package/esm/rpc/RpcManager.d.ts +116 -27
  329. package/esm/rpc/RpcManager.js +177 -50
  330. package/esm/rpc/RpcRegistry.d.ts +275 -0
  331. package/esm/rpc/RpcRegistry.js +1 -0
  332. package/esm/rpc/RpcServer.d.ts +41 -0
  333. package/esm/rpc/RpcServer.js +235 -0
  334. package/esm/rpc/WebWorkerRpcDriver.d.ts +71 -24
  335. package/esm/rpc/WebWorkerRpcDriver.js +312 -27
  336. package/esm/rpc/byteBudget.d.ts +58 -0
  337. package/esm/rpc/byteBudget.js +50 -0
  338. package/esm/rpc/configSchema.d.ts +27 -5
  339. package/esm/rpc/configSchema.js +40 -16
  340. package/esm/rpc/coreRpcMethods.d.ts +3 -5
  341. package/esm/rpc/coreRpcMethods.js +10 -12
  342. package/esm/rpc/explainTransferError.d.ts +35 -0
  343. package/esm/rpc/explainTransferError.js +158 -0
  344. package/esm/rpc/methods/CoreFreeResources.d.ts +19 -4
  345. package/esm/rpc/methods/CoreFreeResources.js +17 -6
  346. package/esm/rpc/methods/CoreGetExportData.d.ts +5 -18
  347. package/esm/rpc/methods/CoreGetExportData.js +26 -15
  348. package/esm/rpc/methods/CoreGetFeatureDensity.d.ts +11 -0
  349. package/esm/rpc/methods/CoreGetFeatureDensity.js +22 -0
  350. package/esm/rpc/methods/CoreGetFeatures.d.ts +6 -15
  351. package/esm/rpc/methods/CoreGetFeatures.js +15 -17
  352. package/esm/rpc/methods/CoreGetInfo.d.ts +6 -0
  353. package/esm/rpc/methods/CoreGetInfo.js +12 -0
  354. package/esm/rpc/methods/CoreGetMetadata.d.ts +4 -7
  355. package/esm/rpc/methods/CoreGetMetadata.js +6 -9
  356. package/esm/rpc/methods/CoreGetRefNames.d.ts +4 -8
  357. package/esm/rpc/methods/CoreGetRefNames.js +24 -13
  358. package/esm/rpc/methods/CoreGetRegionByteEstimate.d.ts +6 -0
  359. package/esm/rpc/methods/CoreGetRegionByteEstimate.js +19 -0
  360. package/esm/rpc/methods/CoreGetRegions.d.ts +4 -6
  361. package/esm/rpc/methods/CoreGetRegions.js +6 -9
  362. package/esm/rpc/methods/CoreGetSequence.d.ts +4 -11
  363. package/esm/rpc/methods/CoreGetSequence.js +12 -13
  364. package/esm/rpc/serializeError/index.d.ts +9 -0
  365. package/esm/rpc/serializeError/index.js +86 -0
  366. package/esm/svg/SvgExport.d.ts +30 -0
  367. package/esm/svg/SvgExport.js +53 -0
  368. package/esm/svg/constants.d.ts +1 -0
  369. package/esm/svg/constants.js +5 -0
  370. package/esm/svg/saveSvgAsImage.d.ts +6 -0
  371. package/esm/svg/saveSvgAsImage.js +90 -0
  372. package/esm/svg/svgId.d.ts +42 -0
  373. package/esm/svg/svgId.js +84 -0
  374. package/esm/svg/svgReady.d.ts +137 -0
  375. package/esm/svg/svgReady.js +164 -0
  376. package/esm/svg/trackNames.d.ts +27 -0
  377. package/esm/svg/trackNames.js +31 -0
  378. package/esm/svg/wrapSvgExport.d.ts +12 -0
  379. package/esm/svg/wrapSvgExport.js +78 -0
  380. package/esm/ui/ActionLink.d.ts +7 -0
  381. package/esm/ui/ActionLink.js +9 -0
  382. package/esm/ui/AddCustomPluginDialog.d.ts +14 -0
  383. package/esm/ui/AddCustomPluginDialog.js +61 -0
  384. package/esm/ui/AddGenomePane.d.ts +8 -0
  385. package/esm/ui/AddGenomePane.js +228 -0
  386. package/esm/ui/AdvancedOptions.d.ts +6 -0
  387. package/esm/ui/AdvancedOptions.js +17 -0
  388. package/esm/ui/AppLogo.d.ts +1 -1
  389. package/esm/ui/AppLogo.js +2 -2
  390. package/esm/ui/AssemblySelector.d.ts +5 -8
  391. package/esm/ui/AssemblySelector.js +8 -26
  392. package/esm/ui/BaseExportSvgDialog.d.ts +16 -0
  393. package/esm/ui/BaseExportSvgDialog.js +84 -0
  394. package/esm/ui/BaseTooltip.d.ts +14 -3
  395. package/esm/ui/BaseTooltip.js +151 -34
  396. package/esm/ui/CascadingMenu.d.ts +9 -18
  397. package/esm/ui/CascadingMenu.js +390 -41
  398. package/esm/ui/CascadingMenuButton.d.ts +9 -11
  399. package/esm/ui/CascadingMenuButton.js +36 -18
  400. package/esm/ui/CascadingMenuHelpDialog.d.ts +2 -2
  401. package/esm/ui/CascadingMenuHelpDialog.js +4 -5
  402. package/esm/ui/CascadingMenuHelpIconButton.d.ts +2 -1
  403. package/esm/ui/CascadingMenuHelpIconButton.js +18 -9
  404. package/esm/ui/ColorPicker.d.ts +6 -9
  405. package/esm/ui/ColorPicker.js +36 -39
  406. package/esm/ui/ConfirmDialog.d.ts +2 -9
  407. package/esm/ui/ConfirmDialog.js +6 -9
  408. package/esm/ui/ContextMenu.d.ts +50 -0
  409. package/esm/ui/ContextMenu.js +55 -0
  410. package/esm/ui/CopyToClipboardButton.d.ts +10 -0
  411. package/esm/ui/CopyToClipboardButton.js +14 -0
  412. package/esm/ui/Crosshairs.d.ts +10 -0
  413. package/esm/ui/Crosshairs.js +15 -0
  414. package/esm/ui/DOMPurifySanitizedHTML.d.ts +1 -1
  415. package/esm/ui/DOMPurifySanitizedHTML.js +5 -5
  416. package/esm/ui/DataGridFlexContainer.d.ts +9 -2
  417. package/esm/ui/DataGridFlexContainer.js +4 -3
  418. package/esm/ui/Dialog.d.ts +5 -2
  419. package/esm/ui/Dialog.js +35 -27
  420. package/esm/ui/DraggableDialog.d.ts +3 -3
  421. package/esm/ui/DraggableDialog.js +50 -12
  422. package/esm/ui/DropDownMenu.d.ts +4 -2
  423. package/esm/ui/DropDownMenu.js +4 -4
  424. package/esm/ui/EditableTypography.d.ts +3 -1
  425. package/esm/ui/EditableTypography.js +34 -26
  426. package/esm/ui/ErrorActions.d.ts +24 -0
  427. package/esm/ui/ErrorActions.js +20 -0
  428. package/esm/ui/ErrorBanner.d.ts +7 -0
  429. package/esm/ui/ErrorBanner.js +35 -0
  430. package/esm/ui/ErrorBar.d.ts +6 -0
  431. package/esm/ui/ErrorBar.js +35 -0
  432. package/esm/ui/ErrorBoundary.d.ts +29 -5
  433. package/esm/ui/ErrorBoundary.js +32 -2
  434. package/esm/ui/ErrorMessage.d.ts +2 -4
  435. package/esm/ui/ErrorMessage.js +17 -52
  436. package/esm/ui/ErrorMessageStackTraceContents.d.ts +1 -1
  437. package/esm/ui/ErrorMessageStackTraceContents.js +3 -3
  438. package/esm/ui/ErrorMessageStackTraceDialog.d.ts +1 -1
  439. package/esm/ui/ErrorMessageStackTraceDialog.js +57 -96
  440. package/esm/ui/ErrorOverlay.d.ts +8 -0
  441. package/esm/ui/ErrorOverlay.js +5 -0
  442. package/esm/ui/ExportSvgDialog.d.ts +7 -0
  443. package/esm/ui/ExportSvgDialog.js +9 -0
  444. package/esm/ui/ExternalLink.d.ts +1 -1
  445. package/esm/ui/FactoryResetDialog.d.ts +1 -1
  446. package/esm/ui/FactoryResetDialog.js +6 -15
  447. package/esm/ui/FatalErrorDialog.d.ts +3 -2
  448. package/esm/ui/FatalErrorDialog.js +6 -5
  449. package/esm/ui/FileDropZone.d.ts +25 -0
  450. package/esm/ui/FileDropZone.js +128 -0
  451. package/esm/ui/FileSelector/FileSelector.d.ts +1 -1
  452. package/esm/ui/FileSelector/FileSelector.js +59 -30
  453. package/esm/ui/FileSelector/LocalFileChooser.d.ts +7 -2
  454. package/esm/ui/FileSelector/LocalFileChooser.js +61 -47
  455. package/esm/ui/FileSelector/LocationInput.d.ts +1 -1
  456. package/esm/ui/FileSelector/LocationInput.js +8 -12
  457. package/esm/ui/FileSelector/SourceTypeSelector.d.ts +5 -5
  458. package/esm/ui/FileSelector/SourceTypeSelector.js +9 -7
  459. package/esm/ui/FileSelector/UrlChooser.d.ts +1 -1
  460. package/esm/ui/FileSelector/UrlChooser.js +26 -2
  461. package/esm/ui/FileSelector/emptySourceType.d.ts +2 -0
  462. package/esm/ui/FileSelector/emptySourceType.js +14 -0
  463. package/esm/ui/FileSelector/useInternetAccounts.d.ts +383 -71
  464. package/esm/ui/FileSelector/useInternetAccounts.js +13 -6
  465. package/esm/ui/FileSelector/util.d.ts +58 -3
  466. package/esm/ui/FileSelector/util.js +128 -11
  467. package/esm/ui/GpuFallbackButton.d.ts +12 -0
  468. package/esm/ui/GpuFallbackButton.js +20 -0
  469. package/esm/ui/HoverMenu.d.ts +12 -3
  470. package/esm/ui/HoverMenu.js +31 -9
  471. package/esm/ui/HoverTooltip.d.ts +27 -0
  472. package/esm/ui/HoverTooltip.js +24 -0
  473. package/esm/ui/Icons.d.ts +6 -4
  474. package/esm/ui/Icons.js +9 -0
  475. package/esm/ui/InfoDialog.d.ts +7 -0
  476. package/esm/ui/InfoDialog.js +16 -0
  477. package/esm/ui/InlineMenuControls.d.ts +6 -0
  478. package/esm/ui/InlineMenuControls.js +17 -0
  479. package/esm/ui/JexlFilterDialog.d.ts +23 -0
  480. package/esm/ui/JexlFilterDialog.js +94 -0
  481. package/esm/ui/LabeledCheckbox.d.ts +9 -0
  482. package/esm/ui/LabeledCheckbox.js +7 -0
  483. package/esm/ui/LegendSwatchGlyph.d.ts +7 -0
  484. package/esm/ui/LegendSwatchGlyph.js +25 -0
  485. package/esm/ui/LoadingDots.d.ts +1 -0
  486. package/esm/ui/LoadingDots.js +30 -0
  487. package/esm/ui/LoadingEllipses.d.ts +17 -1
  488. package/esm/ui/LoadingEllipses.js +20 -29
  489. package/esm/ui/LoadingOverlay.d.ts +23 -0
  490. package/esm/ui/LoadingOverlay.js +137 -0
  491. package/esm/ui/LoadingProgress.d.ts +16 -0
  492. package/esm/ui/LoadingProgress.js +16 -0
  493. package/esm/ui/Logo.d.ts +2 -2
  494. package/esm/ui/Logo.js +23 -24
  495. package/esm/ui/Menu.js +1 -1
  496. package/esm/ui/MenuItemChevron.d.ts +3 -0
  497. package/esm/ui/MenuItemChevron.js +19 -0
  498. package/esm/ui/MenuItemEndDecoration.d.ts +4 -0
  499. package/esm/ui/MenuItemEndDecoration.js +28 -0
  500. package/esm/ui/MenuItemTrailing.d.ts +12 -0
  501. package/esm/ui/MenuItemTrailing.js +42 -0
  502. package/esm/ui/MenuTypes.d.ts +134 -5
  503. package/esm/ui/MenuTypes.js +16 -1
  504. package/esm/ui/MonospaceTextField.d.ts +9 -0
  505. package/esm/ui/MonospaceTextField.js +37 -0
  506. package/esm/ui/NumberTextField.d.ts +31 -0
  507. package/esm/ui/NumberTextField.js +33 -0
  508. package/esm/ui/PaletteContext.d.ts +92 -0
  509. package/esm/ui/PaletteContext.js +133 -0
  510. package/esm/ui/PinAdornment.d.ts +5 -0
  511. package/esm/ui/PinAdornment.js +85 -0
  512. package/esm/ui/PluggableComponent.d.ts +10 -0
  513. package/esm/ui/PluggableComponent.js +19 -0
  514. package/esm/ui/PluggableComponents.d.ts +29 -0
  515. package/esm/ui/PluggableComponents.js +28 -0
  516. package/esm/ui/PluggableElements.d.ts +23 -0
  517. package/esm/ui/PluggableElements.js +24 -0
  518. package/esm/ui/PluginStoreCard.d.ts +17 -0
  519. package/esm/ui/PluginStoreCard.js +45 -0
  520. package/esm/ui/PopoverPicker.d.ts +6 -0
  521. package/esm/ui/PopoverPicker.js +25 -0
  522. package/esm/ui/PrerenderedCanvas.d.ts +1 -1
  523. package/esm/ui/PrerenderedCanvas.js +5 -4
  524. package/esm/ui/ProgressChip.d.ts +37 -0
  525. package/esm/ui/ProgressChip.js +66 -0
  526. package/esm/ui/RedErrorMessageBox.d.ts +1 -1
  527. package/esm/ui/RedErrorMessageBox.js +9 -3
  528. package/esm/ui/RefNameAutocomplete/EndAdornment.d.ts +5 -0
  529. package/esm/ui/RefNameAutocomplete/EndAdornment.js +31 -0
  530. package/esm/ui/RefNameAutocomplete/HelpDialog.d.ts +3 -0
  531. package/esm/ui/RefNameAutocomplete/HelpDialog.js +7 -0
  532. package/esm/ui/RefNameAutocomplete/index.d.ts +22 -0
  533. package/esm/ui/RefNameAutocomplete/index.js +78 -0
  534. package/esm/ui/RefNameAutocomplete/util.d.ts +49 -0
  535. package/esm/ui/RefNameAutocomplete/util.js +168 -0
  536. package/esm/ui/ReplaceCurrentViewButton.d.ts +19 -0
  537. package/esm/ui/ReplaceCurrentViewButton.js +22 -0
  538. package/esm/ui/ResizeHandle.d.ts +13 -7
  539. package/esm/ui/ResizeHandle.js +42 -55
  540. package/esm/ui/ReturnToImportFormDialog.d.ts +1 -1
  541. package/esm/ui/ReturnToImportFormDialog.js +7 -9
  542. package/esm/ui/SanitizedHTML.d.ts +6 -1
  543. package/esm/ui/SanitizedHTML.js +7 -47
  544. package/esm/ui/ScrollEdgeShadow.d.ts +44 -0
  545. package/esm/ui/ScrollEdgeShadow.js +98 -0
  546. package/esm/ui/ScrollZoomToggle.d.ts +38 -0
  547. package/esm/ui/ScrollZoomToggle.js +92 -0
  548. package/esm/ui/SequenceAdapterInputs.d.ts +9 -0
  549. package/esm/ui/SequenceAdapterInputs.js +30 -0
  550. package/esm/ui/SettingsChangesTable.d.ts +14 -0
  551. package/esm/ui/SettingsChangesTable.js +49 -0
  552. package/esm/ui/ShareLinkField.d.ts +6 -0
  553. package/esm/ui/ShareLinkField.js +42 -0
  554. package/esm/ui/SingleSlider.d.ts +8 -0
  555. package/esm/ui/SingleSlider.js +11 -0
  556. package/esm/ui/SizeSliderRow.d.ts +16 -0
  557. package/esm/ui/SizeSliderRow.js +50 -0
  558. package/esm/ui/SliderTooltip.d.ts +2 -0
  559. package/esm/ui/SliderTooltip.js +17 -0
  560. package/esm/ui/Snackbar.d.ts +4 -2
  561. package/esm/ui/Snackbar.js +11 -8
  562. package/esm/ui/SnackbarContents.d.ts +1 -1
  563. package/esm/ui/SnackbarContents.js +21 -3
  564. package/esm/ui/SnackbarModel.d.ts +40 -0
  565. package/esm/ui/SnackbarModel.js +43 -11
  566. package/esm/ui/StackTraceButton.d.ts +5 -0
  567. package/esm/ui/StackTraceButton.js +16 -0
  568. package/esm/ui/StatusProgressBar.d.ts +37 -0
  569. package/esm/ui/StatusProgressBar.js +76 -0
  570. package/esm/ui/SubmitDialog.d.ts +6 -0
  571. package/esm/ui/SubmitDialog.js +9 -0
  572. package/esm/ui/SubmitForm.d.ts +23 -0
  573. package/esm/ui/SubmitForm.js +23 -0
  574. package/esm/ui/SvgColorLegend.d.ts +13 -0
  575. package/esm/ui/SvgColorLegend.js +65 -0
  576. package/esm/ui/SvgGradientLegend.d.ts +26 -0
  577. package/esm/ui/SvgGradientLegend.js +26 -0
  578. package/esm/ui/TagTextField.d.ts +40 -0
  579. package/esm/ui/TagTextField.js +32 -0
  580. package/esm/ui/VerticalScrollbar.d.ts +45 -0
  581. package/esm/ui/VerticalScrollbar.js +158 -0
  582. package/esm/ui/ViewLoadingScreen.d.ts +24 -0
  583. package/esm/ui/ViewLoadingScreen.js +76 -0
  584. package/esm/ui/addExtensionElement.d.ts +18 -0
  585. package/esm/ui/addExtensionElement.js +23 -0
  586. package/esm/ui/buildExtraTrackMenuItems.d.ts +22 -0
  587. package/esm/ui/buildExtraTrackMenuItems.js +14 -0
  588. package/esm/ui/colorSwatchStyle.d.ts +9 -0
  589. package/esm/ui/colorSwatchStyle.js +11 -0
  590. package/esm/ui/colors.d.ts +61 -8
  591. package/esm/ui/colors.js +135 -1
  592. package/esm/ui/extensionSelectors.d.ts +38 -0
  593. package/esm/ui/extensionSelectors.js +49 -0
  594. package/esm/ui/filterMenuItems.d.ts +112 -0
  595. package/esm/ui/filterMenuItems.js +86 -0
  596. package/esm/ui/formatErrorStack.d.ts +1 -0
  597. package/esm/ui/formatErrorStack.js +56 -0
  598. package/esm/ui/gpuFallback.d.ts +33 -0
  599. package/esm/ui/gpuFallback.js +39 -0
  600. package/esm/ui/highlightChipReveal.d.ts +32 -0
  601. package/esm/ui/highlightChipReveal.js +39 -0
  602. package/esm/ui/hoverBoxStyle.d.ts +11 -0
  603. package/esm/ui/hoverBoxStyle.js +13 -0
  604. package/esm/ui/index.d.ts +76 -4
  605. package/esm/ui/index.js +90 -19
  606. package/esm/ui/inlineMenuRowWidth.d.ts +1 -0
  607. package/esm/ui/inlineMenuRowWidth.js +8 -0
  608. package/esm/ui/launchTargetsMenuItem.d.ts +18 -0
  609. package/esm/ui/launchTargetsMenuItem.js +24 -0
  610. package/esm/ui/launchViewMenu.d.ts +4 -0
  611. package/esm/ui/launchViewMenu.js +42 -0
  612. package/esm/ui/legendMenuItem.d.ts +38 -0
  613. package/esm/ui/legendMenuItem.js +44 -0
  614. package/esm/ui/legendSpec.d.ts +62 -0
  615. package/esm/ui/legendSpec.js +78 -0
  616. package/esm/ui/loadingDotKeyframes.d.ts +18 -0
  617. package/esm/ui/loadingDotKeyframes.js +17 -0
  618. package/esm/ui/makeSizeMenu.d.ts +30 -0
  619. package/esm/ui/makeSizeMenu.js +82 -0
  620. package/esm/ui/mapStackTrace.d.ts +8 -0
  621. package/esm/ui/mapStackTrace.js +108 -0
  622. package/esm/ui/measureLegendText.d.ts +1 -0
  623. package/esm/ui/measureLegendText.js +8 -0
  624. package/esm/ui/menuItemAdornment.d.ts +33 -0
  625. package/esm/ui/menuItemAdornment.js +50 -0
  626. package/esm/ui/menuItems.d.ts +28 -0
  627. package/esm/ui/menuItems.js +26 -0
  628. package/esm/ui/menuLabels.d.ts +41 -0
  629. package/esm/ui/menuLabels.js +43 -0
  630. package/esm/ui/multiTrackMenuItems.d.ts +19 -0
  631. package/esm/ui/multiTrackMenuItems.js +15 -0
  632. package/esm/ui/palette.d.ts +559 -0
  633. package/esm/ui/palette.js +746 -0
  634. package/esm/ui/parseError.d.ts +4 -0
  635. package/esm/ui/parseError.js +18 -0
  636. package/esm/ui/persistentScrollbarStyle.d.ts +49 -0
  637. package/esm/ui/persistentScrollbarStyle.js +53 -0
  638. package/esm/ui/promotableMenuItems.d.ts +19 -0
  639. package/esm/ui/promotableMenuItems.js +91 -0
  640. package/esm/ui/promotablePinCoverage.d.ts +44 -0
  641. package/esm/ui/promotablePinCoverage.js +88 -0
  642. package/esm/ui/radioSubMenu.d.ts +33 -0
  643. package/esm/ui/radioSubMenu.js +32 -0
  644. package/esm/ui/react-colorful.js +5 -1
  645. package/esm/ui/replaceViewAction.d.ts +31 -0
  646. package/esm/ui/replaceViewAction.js +39 -0
  647. package/esm/ui/rewriteExternalAnchors.d.ts +1 -0
  648. package/esm/ui/rewriteExternalAnchors.js +8 -0
  649. package/esm/ui/scrollZoomLabels.d.ts +17 -0
  650. package/esm/ui/scrollZoomLabels.js +22 -0
  651. package/esm/ui/showSubMenu.d.ts +19 -0
  652. package/esm/ui/showSubMenu.js +30 -0
  653. package/esm/ui/sliderScale.d.ts +6 -0
  654. package/esm/ui/sliderScale.js +30 -0
  655. package/esm/ui/statusProgressKeyframes.d.ts +6 -0
  656. package/esm/ui/statusProgressKeyframes.js +14 -0
  657. package/esm/ui/stripStackTraceMessage.d.ts +1 -0
  658. package/esm/ui/stripStackTraceMessage.js +9 -0
  659. package/esm/ui/styleTheme.d.ts +158 -0
  660. package/esm/ui/styleTheme.js +115 -0
  661. package/esm/ui/submenuAim.d.ts +30 -0
  662. package/esm/ui/submenuAim.js +37 -0
  663. package/esm/ui/theme.d.ts +343 -29
  664. package/esm/ui/theme.js +258 -342
  665. package/esm/ui/toggleMenuItems.d.ts +42 -0
  666. package/esm/ui/toggleMenuItems.js +60 -0
  667. package/esm/ui/useAssemblySelection.d.ts +153 -0
  668. package/esm/ui/useAssemblySelection.js +54 -0
  669. package/esm/ui/useCoalescedPointer.d.ts +36 -0
  670. package/esm/ui/useCoalescedPointer.js +60 -0
  671. package/esm/ui/useCopyToClipboard.d.ts +15 -0
  672. package/esm/ui/useCopyToClipboard.js +41 -0
  673. package/esm/ui/useExportSvgPreference.d.ts +1 -0
  674. package/esm/ui/useExportSvgPreference.js +4 -0
  675. package/esm/ui/useMouseTracking.d.ts +71 -0
  676. package/esm/ui/useMouseTracking.js +179 -0
  677. package/esm/ui/useRecentLocations.d.ts +28 -0
  678. package/esm/ui/useRecentLocations.js +31 -0
  679. package/esm/ui/wrapComponent.d.ts +47 -0
  680. package/esm/ui/wrapComponent.js +58 -0
  681. package/esm/ui/zIndexes.d.ts +28 -0
  682. package/esm/ui/zIndexes.js +38 -0
  683. package/esm/util/Base1DUtils.d.ts +204 -16
  684. package/esm/util/Base1DUtils.js +310 -175
  685. package/esm/util/Base1DViewModel.d.ts +97 -20
  686. package/esm/util/Base1DViewModel.js +148 -39
  687. package/esm/util/FileSaver/index.d.ts +1 -0
  688. package/esm/util/FileSaver/index.js +27 -0
  689. package/esm/util/IntervalTree.d.ts +18 -39
  690. package/esm/util/IntervalTree.js +63 -244
  691. package/esm/util/SvgCanvas.d.ts +81 -0
  692. package/esm/util/SvgCanvas.js +500 -0
  693. package/esm/util/TimeTraveller.d.ts +12 -0
  694. package/esm/util/TimeTraveller.js +130 -27
  695. package/esm/util/aborting.d.ts +17 -4
  696. package/esm/util/aborting.js +30 -25
  697. package/esm/util/adapterMetadata.d.ts +20 -0
  698. package/esm/util/adapterMetadata.js +39 -0
  699. package/esm/util/addAndShowTrack.d.ts +22 -0
  700. package/esm/util/addAndShowTrack.js +27 -0
  701. package/esm/util/addRelativeUris.d.ts +17 -0
  702. package/esm/util/addRelativeUris.js +42 -0
  703. package/esm/util/addTrackComponent.d.ts +72 -0
  704. package/esm/util/addTrackComponent.js +53 -0
  705. package/esm/util/addTrackFromWidget.d.ts +94 -0
  706. package/esm/util/addTrackFromWidget.js +90 -0
  707. package/esm/util/analytics.d.ts +32 -3
  708. package/esm/util/analytics.js +102 -49
  709. package/esm/util/animationAllowed.d.ts +17 -0
  710. package/esm/util/animationAllowed.js +22 -0
  711. package/esm/util/applyRowResizeWheel.d.ts +10 -0
  712. package/esm/util/applyRowResizeWheel.js +34 -0
  713. package/esm/util/assemblyConfigUtils.d.ts +144 -0
  714. package/esm/util/assemblyConfigUtils.js +498 -0
  715. package/esm/util/bandHeight.d.ts +53 -0
  716. package/esm/util/bandHeight.js +56 -0
  717. package/esm/util/bandLayout.d.ts +51 -0
  718. package/esm/util/bandLayout.js +36 -0
  719. package/esm/util/bezierConnector.d.ts +14 -0
  720. package/esm/util/bezierConnector.js +108 -0
  721. package/esm/util/bgzfWorkerPool.d.ts +78 -0
  722. package/esm/util/bgzfWorkerPool.js +81 -0
  723. package/esm/util/blockTypes.d.ts +64 -45
  724. package/esm/util/blockTypes.js +67 -74
  725. package/esm/util/bpUtils.d.ts +81 -0
  726. package/esm/util/bpUtils.js +103 -0
  727. package/esm/util/cacheBudgets.d.ts +55 -0
  728. package/esm/util/cacheBudgets.js +55 -0
  729. package/esm/util/cachedSetup.d.ts +51 -0
  730. package/esm/util/cachedSetup.js +87 -0
  731. package/esm/util/calculateDynamicBlocks.d.ts +5 -0
  732. package/esm/util/calculateDynamicBlocks.js +85 -82
  733. package/esm/util/calculateStaticBlocks.d.ts +2 -3
  734. package/esm/util/calculateStaticBlocks.js +48 -71
  735. package/esm/util/chooseGridPitch.d.ts +9 -0
  736. package/esm/util/chooseGridPitch.js +31 -0
  737. package/esm/util/clampToContig.d.ts +26 -0
  738. package/esm/util/clampToContig.js +28 -0
  739. package/esm/util/cmpStr.d.ts +1 -0
  740. package/esm/util/cmpStr.js +7 -0
  741. package/esm/util/coarseStripHTML.js +3 -15
  742. package/esm/util/color/cssColorsLevel4.js +6 -2
  743. package/esm/util/color/index.d.ts +81 -2
  744. package/esm/util/color/index.js +194 -25
  745. package/esm/util/color-bits/bit.d.ts +4 -0
  746. package/esm/util/color-bits/bit.js +37 -0
  747. package/esm/util/color-bits/convert.d.ts +23 -0
  748. package/esm/util/color-bits/convert.js +294 -0
  749. package/esm/util/color-bits/core.d.ts +34 -0
  750. package/esm/util/color-bits/core.js +67 -0
  751. package/esm/util/color-bits/format.d.ts +24 -0
  752. package/esm/util/color-bits/format.js +82 -0
  753. package/esm/util/color-bits/functions.d.ts +33 -0
  754. package/esm/util/color-bits/functions.js +70 -0
  755. package/esm/util/color-bits/index.d.ts +5 -0
  756. package/esm/util/color-bits/index.js +4 -0
  757. package/esm/util/color-bits/parse.d.ts +17 -0
  758. package/esm/util/color-bits/parse.js +382 -0
  759. package/esm/util/colorBits.d.ts +39 -0
  760. package/esm/util/colorBits.js +180 -0
  761. package/esm/util/colorRamp.d.ts +37 -0
  762. package/esm/util/colorRamp.js +93 -0
  763. package/esm/util/colord.d.ts +8 -0
  764. package/esm/util/colord.js +43 -191
  765. package/esm/util/convertCodingSequenceToPeptides.d.ts +17 -3
  766. package/esm/util/convertCodingSequenceToPeptides.js +51 -4
  767. package/esm/util/copyText.d.ts +18 -0
  768. package/esm/util/copyText.js +30 -0
  769. package/esm/util/copyToClipboard.d.ts +4 -0
  770. package/esm/util/copyToClipboard.js +58 -0
  771. package/esm/util/createStopTokenRotation.d.ts +118 -0
  772. package/esm/util/createStopTokenRotation.js +127 -0
  773. package/esm/util/createSvgRasterCanvas.d.ts +7 -0
  774. package/esm/util/createSvgRasterCanvas.js +22 -0
  775. package/esm/util/crypto.d.ts +24 -0
  776. package/esm/util/crypto.js +85 -2
  777. package/esm/util/dataGridUtils.d.ts +9 -0
  778. package/esm/util/dataGridUtils.js +36 -0
  779. package/esm/util/dedupe.js +1 -0
  780. package/esm/util/deepEqual.d.ts +8 -0
  781. package/esm/util/deepEqual.js +22 -0
  782. package/esm/util/deepMerge.d.ts +20 -0
  783. package/esm/util/deepMerge.js +44 -0
  784. package/esm/util/diagonalizeRegions.d.ts +23 -0
  785. package/esm/util/diagonalizeRegions.js +192 -0
  786. package/esm/util/environment.d.ts +4 -0
  787. package/esm/util/environment.js +43 -0
  788. package/esm/util/eventPoint.d.ts +32 -0
  789. package/esm/util/eventPoint.js +28 -0
  790. package/esm/util/fetchAndMaybeUnzip.d.ts +6 -0
  791. package/esm/util/fetchAndMaybeUnzip.js +64 -0
  792. package/esm/util/fetchContext.d.ts +82 -0
  793. package/esm/util/fetchContext.js +59 -0
  794. package/esm/util/fetchHub.d.ts +15 -0
  795. package/esm/util/fetchHub.js +31 -0
  796. package/esm/util/fetchJson.d.ts +1 -0
  797. package/esm/util/fetchJson.js +7 -0
  798. package/esm/util/fetchPhases.d.ts +77 -0
  799. package/esm/util/fetchPhases.js +1 -0
  800. package/esm/util/fetchSeq.d.ts +5 -1
  801. package/esm/util/fetchSeq.js +18 -6
  802. package/esm/util/fileHandleStore.d.ts +19 -2
  803. package/esm/util/fileHandleStore.js +95 -35
  804. package/esm/util/flatbush/index.d.ts +27 -6
  805. package/esm/util/flatbush/index.js +194 -218
  806. package/esm/util/formatBytes.d.ts +9 -0
  807. package/esm/util/formatBytes.js +18 -0
  808. package/esm/util/formatFastaStrings.d.ts +13 -0
  809. package/esm/util/formatFastaStrings.js +13 -0
  810. package/esm/util/formatGuessers.d.ts +30 -0
  811. package/esm/util/formatGuessers.js +69 -0
  812. package/esm/util/formatRelativeTime.d.ts +1 -0
  813. package/esm/util/formatRelativeTime.js +25 -0
  814. package/esm/util/frameCoalescer.d.ts +30 -0
  815. package/esm/util/frameCoalescer.js +22 -0
  816. package/esm/util/freezeDeep.d.ts +28 -0
  817. package/esm/util/freezeDeep.js +41 -0
  818. package/esm/util/geneticCodes.d.ts +56 -0
  819. package/esm/util/geneticCodes.js +371 -0
  820. package/esm/util/getFileName.d.ts +11 -0
  821. package/esm/util/getFileName.js +34 -0
  822. package/esm/util/getLocationUri.d.ts +49 -0
  823. package/esm/util/getLocationUri.js +63 -0
  824. package/esm/util/getRelativeX.d.ts +4 -0
  825. package/esm/util/getRelativeX.js +7 -0
  826. package/esm/util/getStr.d.ts +6 -0
  827. package/esm/util/getStr.js +15 -0
  828. package/esm/util/highlights.d.ts +21 -0
  829. package/esm/util/highlights.js +100 -0
  830. package/esm/util/hooks.d.ts +168 -0
  831. package/esm/util/hooks.js +443 -0
  832. package/esm/util/htmlText.d.ts +13 -0
  833. package/esm/util/htmlText.js +66 -0
  834. package/esm/util/idMaker.d.ts +1 -1
  835. package/esm/util/idMaker.js +31 -18
  836. package/esm/util/index.d.ts +81 -268
  837. package/esm/util/index.js +135 -853
  838. package/esm/util/indexCandidates.d.ts +50 -0
  839. package/esm/util/indexCandidates.js +101 -0
  840. package/esm/util/installClearHoverOnSurfaceMove.d.ts +40 -0
  841. package/esm/util/installClearHoverOnSurfaceMove.js +41 -0
  842. package/esm/util/installFetch.d.ts +220 -0
  843. package/esm/util/installFetch.js +206 -0
  844. package/esm/util/installInitAutorun.d.ts +62 -0
  845. package/esm/util/installInitAutorun.js +107 -0
  846. package/esm/util/intervals.d.ts +20 -0
  847. package/esm/util/intervals.js +37 -0
  848. package/esm/util/io/RemoteFileWithRangeCache.d.ts +10 -11
  849. package/esm/util/io/RemoteFileWithRangeCache.js +10 -148
  850. package/esm/util/io/index.d.ts +39 -2
  851. package/esm/util/io/index.js +115 -12
  852. package/esm/util/isDataCurrent.d.ts +7 -0
  853. package/esm/util/isDataCurrent.js +9 -0
  854. package/esm/util/isWebWorker.js +1 -2
  855. package/esm/util/iupac.d.ts +4 -0
  856. package/esm/util/iupac.js +59 -0
  857. package/esm/util/jexl.js +141 -17
  858. package/esm/util/jexlFilters.d.ts +75 -0
  859. package/esm/util/jexlFilters.js +49 -0
  860. package/esm/util/jexlStrings.d.ts +22 -1
  861. package/esm/util/jexlStrings.js +21 -14
  862. package/esm/util/layouts/GranularRectLayout.d.ts +13 -25
  863. package/esm/util/layouts/GranularRectLayout.js +99 -356
  864. package/esm/util/layouts/index.d.ts +1 -7
  865. package/esm/util/layouts/index.js +2 -6
  866. package/esm/util/layouts/intervalUtils.d.ts +12 -1
  867. package/esm/util/layouts/intervalUtils.js +13 -31
  868. package/esm/util/layouts/placeRect.d.ts +50 -0
  869. package/esm/util/layouts/placeRect.js +97 -0
  870. package/esm/util/lazyAfterAttach.d.ts +13 -0
  871. package/esm/util/lazyAfterAttach.js +31 -0
  872. package/esm/util/leadingEdgeAutorun.d.ts +40 -0
  873. package/esm/util/leadingEdgeAutorun.js +51 -0
  874. package/esm/util/legendCandidates.d.ts +50 -0
  875. package/esm/util/legendCandidates.js +87 -0
  876. package/esm/util/librpc.d.ts +5 -2
  877. package/esm/util/librpc.js +6 -1
  878. package/esm/util/linkify.js +2 -0
  879. package/esm/util/locString.d.ts +72 -0
  880. package/esm/util/locString.js +178 -7
  881. package/esm/util/locStringsToRegions.d.ts +10 -0
  882. package/esm/util/locStringsToRegions.js +35 -0
  883. package/esm/util/localStorage.d.ts +36 -0
  884. package/esm/util/localStorage.js +137 -0
  885. package/esm/util/makeAssembly.d.ts +54 -0
  886. package/esm/util/makeAssembly.js +52 -0
  887. package/esm/util/makeTrackId.d.ts +14 -0
  888. package/esm/util/makeTrackId.js +14 -0
  889. package/esm/util/matchTrackId.d.ts +11 -0
  890. package/esm/util/matchTrackId.js +14 -0
  891. package/esm/util/measureText.d.ts +24 -0
  892. package/esm/util/measureText.js +51 -0
  893. package/esm/util/mst-reflection.d.ts +14 -4
  894. package/esm/util/mst-reflection.js +33 -32
  895. package/esm/util/mstUtils.d.ts +100 -0
  896. package/esm/util/mstUtils.js +140 -0
  897. package/esm/util/nanoid.d.ts +0 -4
  898. package/esm/util/nanoid.js +10 -20
  899. package/esm/util/numericUtils.d.ts +20 -0
  900. package/esm/util/numericUtils.js +127 -0
  901. package/esm/util/objectUtils.d.ts +2 -0
  902. package/esm/util/objectUtils.js +9 -0
  903. package/esm/util/offscreenCanvasPonyfill.d.ts +5 -4
  904. package/esm/util/offscreenCanvasPonyfill.js +5 -47
  905. package/esm/util/openDisplays.d.ts +23 -0
  906. package/esm/util/openDisplays.js +79 -0
  907. package/esm/util/openFeatureWidget.d.ts +33 -0
  908. package/esm/util/openFeatureWidget.js +64 -0
  909. package/esm/util/paintLayer.d.ts +32 -0
  910. package/esm/util/paintLayer.js +33 -0
  911. package/esm/util/parentWalk.d.ts +32 -0
  912. package/esm/util/parentWalk.js +84 -0
  913. package/esm/util/parseLineByLine.d.ts +45 -2
  914. package/esm/util/parseLineByLine.js +156 -15
  915. package/esm/util/parseMotifList.d.ts +17 -0
  916. package/esm/util/parseMotifList.js +69 -0
  917. package/esm/util/pluginStore.d.ts +114 -0
  918. package/esm/util/pluginStore.js +260 -0
  919. package/esm/util/pointerPresence.d.ts +5 -0
  920. package/esm/util/pointerPresence.js +21 -0
  921. package/esm/util/progress.d.ts +459 -0
  922. package/esm/util/progress.js +820 -0
  923. package/esm/util/range.d.ts +46 -1
  924. package/esm/util/range.js +68 -2
  925. package/esm/util/renameRegions.d.ts +21 -0
  926. package/esm/util/renameRegions.js +129 -0
  927. package/esm/util/renderToStaticMarkup.d.ts +2 -0
  928. package/esm/util/renderToStaticMarkup.js +50 -0
  929. package/esm/util/reorder.d.ts +35 -0
  930. package/esm/util/reorder.js +83 -0
  931. package/esm/util/resolveRowHeight.d.ts +27 -0
  932. package/esm/util/resolveRowHeight.js +30 -0
  933. package/esm/util/revlist.d.ts +13 -0
  934. package/esm/util/revlist.js +14 -0
  935. package/esm/util/rowStackGeometry.d.ts +66 -0
  936. package/esm/util/rowStackGeometry.js +70 -0
  937. package/esm/util/rpc.d.ts +16 -1
  938. package/esm/util/rpc.js +12 -1
  939. package/esm/util/rxjs.d.ts +30 -1
  940. package/esm/util/rxjs.js +88 -10
  941. package/esm/util/sameStrings.d.ts +16 -0
  942. package/esm/util/sameStrings.js +20 -0
  943. package/esm/util/scrollLatch.d.ts +4 -0
  944. package/esm/util/scrollLatch.js +59 -0
  945. package/esm/util/selectNamedRegions.d.ts +136 -0
  946. package/esm/util/selectNamedRegions.js +222 -0
  947. package/esm/util/seqUtils.d.ts +17 -0
  948. package/esm/util/seqUtils.js +80 -0
  949. package/esm/util/sessionServices.d.ts +29 -0
  950. package/esm/util/sessionServices.js +46 -0
  951. package/esm/util/sessionSharing.d.ts +38 -0
  952. package/esm/util/sessionSharing.js +154 -0
  953. package/esm/util/sessionStorage.d.ts +1 -0
  954. package/esm/util/sessionStorage.js +15 -0
  955. package/esm/util/setStackTraceLimit.d.ts +6 -0
  956. package/esm/util/setStackTraceLimit.js +20 -0
  957. package/esm/util/simpleFeature.d.ts +112 -4
  958. package/esm/util/simpleFeature.js +181 -29
  959. package/esm/util/springAnimate.d.ts +20 -0
  960. package/esm/util/springAnimate.js +80 -0
  961. package/esm/util/stats.d.ts +25 -2
  962. package/esm/util/stats.js +39 -8
  963. package/esm/util/stopToken.d.ts +207 -15
  964. package/esm/util/stopToken.js +403 -55
  965. package/esm/util/stringUtils.d.ts +5 -0
  966. package/esm/util/stringUtils.js +34 -0
  967. package/esm/util/svgColorProps.d.ts +7 -0
  968. package/esm/util/svgColorProps.js +28 -0
  969. package/esm/util/tabix.d.ts +126 -0
  970. package/esm/util/tabix.js +149 -0
  971. package/esm/util/tags.d.ts +2 -0
  972. package/esm/util/tags.js +5 -0
  973. package/esm/util/temporaryAssembly.d.ts +21 -0
  974. package/esm/util/temporaryAssembly.js +29 -0
  975. package/esm/util/tickLabels.d.ts +36 -0
  976. package/esm/util/tickLabels.js +45 -0
  977. package/esm/util/timeGate.d.ts +26 -0
  978. package/esm/util/timeGate.js +79 -0
  979. package/esm/util/trackConfigDelta.d.ts +84 -0
  980. package/esm/util/trackConfigDelta.js +190 -0
  981. package/esm/util/tracks.d.ts +398 -30
  982. package/esm/util/tracks.js +699 -191
  983. package/esm/util/tss-react/cssAndCx.js +11 -66
  984. package/esm/util/tss-react/index.d.ts +11 -2
  985. package/esm/util/tss-react/index.js +9 -2
  986. package/esm/util/tss-react/makeStyles.js +7 -4
  987. package/esm/util/tss-react/mergeClasses.js +1 -0
  988. package/esm/util/tss-react/tools/classnames.d.ts +3 -0
  989. package/esm/util/tss-react/tools/classnames.js +3 -0
  990. package/esm/util/tss-react/tools/getDependencyArrayRef.d.ts +18 -0
  991. package/esm/util/tss-react/tools/getDependencyArrayRef.js +19 -0
  992. package/esm/util/tss-react/types.d.ts +1 -1
  993. package/esm/util/tss-react/types.js +1 -6
  994. package/esm/util/types/ElementId.js +1 -1
  995. package/esm/util/types/data.d.ts +75 -0
  996. package/esm/util/types/data.js +41 -0
  997. package/esm/util/types/index.d.ts +402 -120
  998. package/esm/util/types/index.js +90 -64
  999. package/esm/util/types/isAny.d.ts +11 -0
  1000. package/esm/util/types/isAny.js +1 -0
  1001. package/esm/util/types/mst.d.ts +71 -47
  1002. package/esm/util/types/mst.js +27 -22
  1003. package/esm/util/types/predicate.d.ts +9 -0
  1004. package/esm/util/types/predicate.js +1 -0
  1005. package/esm/util/types/renderingServices.d.ts +16 -0
  1006. package/esm/util/types/renderingServices.js +1 -0
  1007. package/esm/util/types/services.d.ts +55 -0
  1008. package/esm/util/types/services.js +10 -0
  1009. package/esm/util/types/util.d.ts +8 -2
  1010. package/esm/util/unknownSnapshotKeys.d.ts +36 -0
  1011. package/esm/util/unknownSnapshotKeys.js +69 -0
  1012. package/esm/util/unzip.d.ts +1 -0
  1013. package/esm/util/unzip.js +6 -0
  1014. package/esm/util/useEventCallback.d.ts +1 -0
  1015. package/esm/util/useEventCallback.js +16 -0
  1016. package/esm/util/useFeatureSequence.d.ts +13 -7
  1017. package/esm/util/useFeatureSequence.js +56 -78
  1018. package/esm/util/useFetch.d.ts +56 -0
  1019. package/esm/util/useFetch.js +188 -0
  1020. package/esm/util/useFetchPlugins.d.ts +12 -0
  1021. package/esm/util/useFetchPlugins.js +14 -0
  1022. package/esm/util/useMeasure.d.ts +11 -1
  1023. package/esm/util/useMeasure.js +20 -6
  1024. package/esm/util/usePanZoom.d.ts +75 -0
  1025. package/esm/util/usePanZoom.js +175 -0
  1026. package/esm/util/usePanelVirtualScroll.d.ts +37 -0
  1027. package/esm/util/usePanelVirtualScroll.js +42 -0
  1028. package/esm/util/usePointerDrag.d.ts +37 -0
  1029. package/esm/util/usePointerDrag.js +61 -0
  1030. package/esm/util/useRafCommit.d.ts +4 -0
  1031. package/esm/util/useRafCommit.js +50 -0
  1032. package/esm/util/useResizeDrag.d.ts +91 -0
  1033. package/esm/util/useResizeDrag.js +105 -0
  1034. package/esm/util/useRowVirtualScroll.d.ts +32 -0
  1035. package/esm/util/useRowVirtualScroll.js +63 -0
  1036. package/esm/util/useVirtualScrollWheel.d.ts +7 -0
  1037. package/esm/util/useVirtualScrollWheel.js +108 -0
  1038. package/esm/util/viewStatus.d.ts +81 -0
  1039. package/esm/util/viewStatus.js +37 -0
  1040. package/esm/util/virtualRange.d.ts +36 -0
  1041. package/esm/util/virtualRange.js +26 -0
  1042. package/esm/util/webStorage.d.ts +26 -0
  1043. package/esm/util/webStorage.js +92 -0
  1044. package/esm/util/wheelZoom.d.ts +59 -0
  1045. package/esm/util/wheelZoom.js +231 -0
  1046. package/esm/util/whenViewSettled.d.ts +40 -0
  1047. package/esm/util/whenViewSettled.js +41 -0
  1048. package/esm/util/withFeatureDetails.d.ts +34 -0
  1049. package/esm/util/withFeatureDetails.js +59 -0
  1050. package/esm/util/withLaunchInput.d.ts +123 -0
  1051. package/esm/util/withLaunchInput.js +228 -0
  1052. package/package.json +243 -820
  1053. package/esm/ReExports/DataGrid.d.ts +0 -1
  1054. package/esm/ReExports/DataGrid.js +0 -1
  1055. package/esm/configuration/util.d.ts +0 -10
  1056. package/esm/configuration/util.js +0 -123
  1057. package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +0 -18
  1058. package/esm/data_adapters/util.d.ts +0 -1
  1059. package/esm/data_adapters/util.js +0 -6
  1060. package/esm/pluggableElementTypes/GlyphType.d.ts +0 -43
  1061. package/esm/pluggableElementTypes/GlyphType.js +0 -18
  1062. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +0 -5
  1063. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +0 -17
  1064. package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +0 -52
  1065. package/esm/pluggableElementTypes/renderers/BoxRendererType.js +0 -78
  1066. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +0 -4
  1067. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +0 -4
  1068. package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -58
  1069. package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +0 -77
  1070. package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +0 -31
  1071. package/esm/pluggableElementTypes/renderers/LayoutSession.js +0 -40
  1072. package/esm/pluggableElementTypes/renderers/RendererType.d.ts +0 -28
  1073. package/esm/pluggableElementTypes/renderers/RendererType.js +0 -20
  1074. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +0 -58
  1075. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +0 -108
  1076. package/esm/pluggableElementTypes/renderers/index.d.ts +0 -6
  1077. package/esm/pluggableElementTypes/renderers/index.js +0 -6
  1078. package/esm/pluggableElementTypes/renderers/util.d.ts +0 -3
  1079. package/esm/pluggableElementTypes/renderers/util.js +0 -14
  1080. package/esm/rpc/baseRpcConfig.d.ts +0 -8
  1081. package/esm/rpc/baseRpcConfig.js +0 -10
  1082. package/esm/rpc/mainThreadRpcConfig.d.ts +0 -8
  1083. package/esm/rpc/mainThreadRpcConfig.js +0 -8
  1084. package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +0 -17
  1085. package/esm/rpc/methods/CoreGetFeatureDensityStats.js +0 -25
  1086. package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +0 -11
  1087. package/esm/rpc/methods/CoreGetFeatureDetails.js +0 -24
  1088. package/esm/rpc/methods/CoreGetFileInfo.d.ts +0 -9
  1089. package/esm/rpc/methods/CoreGetFileInfo.js +0 -15
  1090. package/esm/rpc/methods/CoreRender.d.ts +0 -14
  1091. package/esm/rpc/methods/CoreRender.js +0 -40
  1092. package/esm/rpc/methods/CoreSaveFeatureData.d.ts +0 -16
  1093. package/esm/rpc/methods/CoreSaveFeatureData.js +0 -32
  1094. package/esm/rpc/methods/util.d.ts +0 -15
  1095. package/esm/rpc/methods/util.js +0 -7
  1096. package/esm/rpc/webWorkerRpcConfig.d.ts +0 -8
  1097. package/esm/rpc/webWorkerRpcConfig.js +0 -8
  1098. package/esm/ui/MenuButton.d.ts +0 -1
  1099. package/esm/ui/MenuButton.js +0 -1
  1100. package/esm/ui/MenuItems.d.ts +0 -15
  1101. package/esm/ui/MenuItems.js +0 -59
  1102. package/esm/ui/useEvent.d.ts +0 -1
  1103. package/esm/ui/useEvent.js +0 -10
  1104. package/esm/util/blobToDataURL.d.ts +0 -1
  1105. package/esm/util/blobToDataURL.js +0 -14
  1106. package/esm/util/compositeMap.d.ts +0 -11
  1107. package/esm/util/compositeMap.js +0 -59
  1108. package/esm/util/flatqueue/index.d.ts +0 -11
  1109. package/esm/util/flatqueue/index.js +0 -61
  1110. package/esm/util/layouts/BaseLayout.d.ts +0 -30
  1111. package/esm/util/layouts/MultiLayout.d.ts +0 -12
  1112. package/esm/util/layouts/MultiLayout.js +0 -40
  1113. package/esm/util/layouts/PileupLayout.d.ts +0 -41
  1114. package/esm/util/layouts/PileupLayout.js +0 -202
  1115. package/esm/util/layouts/PrecomputedLayout.d.ts +0 -30
  1116. package/esm/util/layouts/PrecomputedLayout.js +0 -71
  1117. package/esm/util/layouts/SceneGraph.d.ts +0 -31
  1118. package/esm/util/layouts/SceneGraph.js +0 -121
  1119. package/esm/util/makeAbortableReaction.d.ts +0 -3
  1120. package/esm/util/makeAbortableReaction.js +0 -47
  1121. package/esm/util/map-obj/index.d.ts +0 -13
  1122. package/esm/util/map-obj/index.js +0 -92
  1123. package/esm/util/nextTick.d.ts +0 -1
  1124. package/esm/util/nextTick.js +0 -3
  1125. package/esm/util/offscreenCanvasGetSerializingSvg.d.ts +0 -5
  1126. package/esm/util/offscreenCanvasGetSerializingSvg.js +0 -9
  1127. package/esm/util/offscreenCanvasUtils.d.ts +0 -12
  1128. package/esm/util/offscreenCanvasUtils.js +0 -19
  1129. package/esm/util/renderToAbstractCanvas.d.ts +0 -17
  1130. package/esm/util/renderToAbstractCanvas.js +0 -53
  1131. package/esm/util/transferables.d.ts +0 -2
  1132. package/esm/util/transferables.js +0 -35
  1133. package/esm/util/tss-react/mui/index.d.ts +0 -1
  1134. package/esm/util/tss-react/mui/index.js +0 -1
  1135. package/esm/util/tss-react/mui/mui.d.ts +0 -10
  1136. package/esm/util/tss-react/mui/mui.js +0 -5
  1137. package/esm/util/when.d.ts +0 -1
  1138. package/esm/util/when.js +0 -1
  1139. /package/esm/{data_adapters/BaseAdapter/BaseOptions.js → configuration/promotablePin.js} +0 -0
  1140. /package/esm/{util/layouts/BaseLayout.js → data_adapters/BaseAdapter/CytobandAdapter.js} +0 -0
@@ -0,0 +1,25 @@
1
+ import { jsx as _jsx } from "react/jsx-runtime";
2
+ // The one place that decides what each `LegendMark` looks like. Returns bare SVG
3
+ // shapes rather than a rooted <svg>, so the floating legend (which wraps them in
4
+ // an inline <svg>) and the SVG export (which drops them into a row <g>) draw the
5
+ // identical glyph — a display's on-screen key and its exported figure disagreeing
6
+ // about which color is a curve would be worse than neither having marks.
7
+ //
8
+ // Every shape fills the `size` box from (x, y) so a caller can lay swatches out
9
+ // on a fixed pitch without knowing which mark it is placing.
10
+ export function LegendSwatchGlyph({ swatch, size, x = 0, y = 0, }) {
11
+ const { color, mark = 'fill' } = swatch;
12
+ // Thin enough to read as a stroke next to a solid block, thick enough to
13
+ // carry a color at 10-12px.
14
+ const strokeWidth = Math.max(2, Math.round(size / 5));
15
+ if (mark === 'line') {
16
+ return (_jsx("line", { x1: x, x2: x + size, y1: y + size / 2, y2: y + size / 2, stroke: color, strokeWidth: strokeWidth }));
17
+ }
18
+ if (mark === 'curve') {
19
+ // An arc bulging up out of the box's lower corners, which is the shape of
20
+ // the connector itself — a pair of endpoints with the curve between them.
21
+ const inset = strokeWidth / 2;
22
+ return (_jsx("path", { d: `M${x},${y + size - inset} Q${x + size / 2},${y - size / 3} ${x + size},${y + size - inset}`, fill: "none", stroke: color, strokeWidth: strokeWidth }));
23
+ }
24
+ return _jsx("rect", { x: x, y: y, width: size, height: size, fill: color });
25
+ }
@@ -0,0 +1 @@
1
+ export default function LoadingDots(): import("react").JSX.Element;
@@ -0,0 +1,30 @@
1
+ import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
2
+ import { makeStyles } from '../util/tss-react/index.js';
3
+ import { dot1, dot2, dot3 } from './loadingDotKeyframes.js';
4
+ const useStyles = makeStyles()({
5
+ dots: {
6
+ display: 'inline-block',
7
+ width: '1em',
8
+ textAlign: 'left',
9
+ '& span': {
10
+ display: 'inline-block',
11
+ opacity: 0,
12
+ // promote each dot to its own compositor layer so the opacity animation
13
+ // is offloaded from the main thread and keeps running during jank
14
+ willChange: 'opacity',
15
+ '&:nth-of-type(1)': {
16
+ animation: `${dot1} 1.2s infinite`,
17
+ },
18
+ '&:nth-of-type(2)': {
19
+ animation: `${dot2} 1.2s infinite`,
20
+ },
21
+ '&:nth-of-type(3)': {
22
+ animation: `${dot3} 1.2s infinite`,
23
+ },
24
+ },
25
+ },
26
+ });
27
+ export default function LoadingDots() {
28
+ const { classes } = useStyles();
29
+ return (_jsxs("span", { className: classes.dots, children: [_jsx("span", { children: "." }), _jsx("span", { children: "." }), _jsx("span", { children: "." })] }));
30
+ }
@@ -3,5 +3,21 @@ interface Props extends TypographyProps {
3
3
  message?: string;
4
4
  children?: never;
5
5
  }
6
- export default function LoadingEllipses({ message, children, variant, ...rest }: Props): import("react/jsx-runtime").JSX.Element;
6
+ /**
7
+ * The label every part of the app shows while it is working, and — through
8
+ * `data-busy` — the only thing an automated capture has to look at to know that
9
+ * it is.
10
+ *
11
+ * The attribute is the contract that replaces reading the label. A harness
12
+ * waiting for a page to finish used to scan visible text for /^loading/ and
13
+ * resolve `getComputedStyle` to decide whether each match was on screen, which
14
+ * makes a rendering detail load-bearing: a reworded message, a translation, or
15
+ * an element that animates its opacity all change the answer. `[data-busy]` is
16
+ * published by the component that knows, so a wait is one selector.
17
+ *
18
+ * Anything that renders its own in-flight banner instead of this component
19
+ * should carry the attribute too — see `isPageBusyInPage` in
20
+ * `@jbrowse/capture`, which is what reads it.
21
+ */
22
+ export default function LoadingEllipses({ message, variant, ...rest }: Props): import("react").JSX.Element;
7
23
  export {};
@@ -1,31 +1,22 @@
1
- import { jsx as _jsx } from "react/jsx-runtime";
1
+ import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
2
2
  import { Typography } from '@mui/material';
3
- import { cx, keyframes, makeStyles } from "../util/tss-react/index.js";
4
- const useStyles = makeStyles()({
5
- dots: {
6
- '&::after': {
7
- display: 'inline-block',
8
- content: '""',
9
- width: '1em',
10
- textAlign: 'left',
11
- animation: `${keyframes `
12
- 0% {
13
- content: '';
14
- }
15
- 25% {
16
- content: '.';
17
- }
18
- 50% {
19
- content: '..';
20
- }
21
- 75% {
22
- content: '...';
23
- }
24
- `} 1.2s infinite ease-in-out`,
25
- },
26
- },
27
- });
28
- export default function LoadingEllipses({ message, children, variant = 'body2', ...rest }) {
29
- const { classes } = useStyles();
30
- return (_jsx(Typography, { className: cx(classes.dots, rest.className), ...rest, variant: variant, children: message || 'Loading' }));
3
+ import LoadingDots from './LoadingDots.js';
4
+ /**
5
+ * The label every part of the app shows while it is working, and — through
6
+ * `data-busy` — the only thing an automated capture has to look at to know that
7
+ * it is.
8
+ *
9
+ * The attribute is the contract that replaces reading the label. A harness
10
+ * waiting for a page to finish used to scan visible text for /^loading/ and
11
+ * resolve `getComputedStyle` to decide whether each match was on screen, which
12
+ * makes a rendering detail load-bearing: a reworded message, a translation, or
13
+ * an element that animates its opacity all change the answer. `[data-busy]` is
14
+ * published by the component that knows, so a wait is one selector.
15
+ *
16
+ * Anything that renders its own in-flight banner instead of this component
17
+ * should carry the attribute too — see `isPageBusyInPage` in
18
+ * `@jbrowse/capture`, which is what reads it.
19
+ */
20
+ export default function LoadingEllipses({ message, variant = 'body2', ...rest }) {
21
+ return (_jsxs(Typography, { ...rest, variant: variant, "data-busy": "true", children: [message || 'Loading', _jsx(LoadingDots, {})] }));
31
22
  }
@@ -0,0 +1,23 @@
1
+ /**
2
+ * Returns false, then flips true once `active` has stayed true continuously for
3
+ * `delayMs`. Each activation gets a fresh delay, and the flag drops the moment
4
+ * `active` does.
5
+ *
6
+ * Keyed on a count of RISING edges rather than on `active` itself, so the
7
+ * falling edge does no work at all. A display refetching through a wheel zoom
8
+ * flips `active` several times a second — it finishes a fetch, waits out the
9
+ * debounce, starts the next — and an effect depending on `active` tore its timer
10
+ * down and built a new one on each of those, twice over, for a scrim that by
11
+ * construction never appears. Deriving the flag from a comparison instead means
12
+ * one `setTimeout` per loading pulse, which is the floor for these semantics.
13
+ */
14
+ export declare function useDelayedFlag(active: boolean, delayMs: number): boolean;
15
+ export default function LoadingOverlay({ statusMessage, progress, isVisible, immediate, canceled, onCancel, onRetry, }: {
16
+ statusMessage?: string;
17
+ progress?: number;
18
+ isVisible?: boolean;
19
+ immediate?: boolean;
20
+ canceled?: boolean;
21
+ onCancel?: () => void;
22
+ onRetry?: () => void;
23
+ }): import("react").JSX.Element | null;
@@ -0,0 +1,137 @@
1
+ import { Fragment as _Fragment, jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
2
+ import { useEffect, useState } from 'react';
3
+ import CloseIcon from '@mui/icons-material/Close';
4
+ import RefreshIcon from '@mui/icons-material/Refresh';
5
+ import { IconButton, Tooltip } from '@mui/material';
6
+ import { progressLabel } from '../util/progress.js';
7
+ import { makeStyles } from '../util/tss-react/index.js';
8
+ import LoadingDots from './LoadingDots.js';
9
+ import StatusProgressBar from './StatusProgressBar.js';
10
+ import { alpha } from './palette.js';
11
+ const cancelDelayMs = 5000;
12
+ // suppress the overlay for the first moments of a refetch so quick zoom/pan
13
+ // loads stay silent and only genuinely slow loads ever draw the indicator.
14
+ // Skipped when `immediate` is set (initial load with nothing on screen yet) —
15
+ // there's no content to flash over, so the indicator shows right away.
16
+ const flashDelayMs = 250;
17
+ /**
18
+ * Returns false, then flips true once `active` has stayed true continuously for
19
+ * `delayMs`. Each activation gets a fresh delay, and the flag drops the moment
20
+ * `active` does.
21
+ *
22
+ * Keyed on a count of RISING edges rather than on `active` itself, so the
23
+ * falling edge does no work at all. A display refetching through a wheel zoom
24
+ * flips `active` several times a second — it finishes a fetch, waits out the
25
+ * debounce, starts the next — and an effect depending on `active` tore its timer
26
+ * down and built a new one on each of those, twice over, for a scrim that by
27
+ * construction never appears. Deriving the flag from a comparison instead means
28
+ * one `setTimeout` per loading pulse, which is the floor for these semantics.
29
+ */
30
+ export function useDelayedFlag(active, delayMs) {
31
+ const [previous, setPrevious] = useState(active);
32
+ const [activation, setActivation] = useState(0);
33
+ if (previous !== active) {
34
+ setPrevious(active);
35
+ if (active) {
36
+ setActivation(n => n + 1);
37
+ }
38
+ }
39
+ const [elapsedFor, setElapsedFor] = useState(-1);
40
+ useEffect(() => {
41
+ const id = setTimeout(() => {
42
+ setElapsedFor(activation);
43
+ }, delayMs);
44
+ return () => {
45
+ clearTimeout(id);
46
+ };
47
+ }, [activation, delayMs]);
48
+ return active && elapsedFor === activation;
49
+ }
50
+ const useStyles = makeStyles()(theme => {
51
+ // derive the stripe + chip tints from the theme so the "something's happening"
52
+ // signal stays subtle and equally visible in light and dark mode
53
+ const stripe = alpha(theme.palette.text.primary, 0.05);
54
+ return {
55
+ overlay: {
56
+ position: 'absolute',
57
+ top: 0,
58
+ left: 0,
59
+ right: 0,
60
+ bottom: 0,
61
+ background: `repeating-linear-gradient(45deg, transparent, transparent 8px, ${stripe} 8px, ${stripe} 16px)`,
62
+ pointerEvents: 'none',
63
+ zIndex: 1,
64
+ display: 'flex',
65
+ justifyContent: 'center',
66
+ alignItems: 'flex-start',
67
+ paddingTop: '20px',
68
+ },
69
+ // the status chip is the only interactive element; the striped backdrop stays
70
+ // click-through so it never swallows track interactions.
71
+ //
72
+ // Mostly-opaque paper (was 0.4, which let dense features and the striping
73
+ // read straight through the label): the chip sits over a canvas whose colors
74
+ // aren't known here, so the text needs its own backing to stay legible.
75
+ // `background.paper` rather than a literal white so dark mode gets the dark
76
+ // equivalent, and short of fully opaque so it still reads as an overlay.
77
+ content: {
78
+ pointerEvents: 'auto',
79
+ display: 'flex',
80
+ flexDirection: 'column',
81
+ alignItems: 'center',
82
+ gap: 2,
83
+ background: alpha(theme.palette.background.paper, 0.85),
84
+ borderRadius: 4,
85
+ padding: '2px 8px',
86
+ },
87
+ row: {
88
+ display: 'flex',
89
+ alignItems: 'center',
90
+ gap: 4,
91
+ },
92
+ text: {
93
+ fontSize: '0.8rem',
94
+ fontWeight: 300,
95
+ },
96
+ bar: {
97
+ width: 160,
98
+ },
99
+ };
100
+ });
101
+ export default function LoadingOverlay({ statusMessage, progress, isVisible, immediate, canceled, onCancel, onRetry, }) {
102
+ const { classes } = useStyles();
103
+ const hasProgress = progress !== undefined;
104
+ // anti-flash: only render after the load has run long enough to be worth
105
+ // signaling, so fast loads show nothing at all. `immediate` bypasses this for
106
+ // initial loads, where nothing is on screen to flash over yet.
107
+ //
108
+ // The delay runs off `isVisible` ALONE. Feeding `!immediate` in as well made
109
+ // `immediate` *restart* the timer rather than merely bypass it, and the chrome
110
+ // flips `immediate` mid-load: it passes `immediate={!painted}`, so first paint
111
+ // drops it while the phase is still `loading` — region 1 drawn, regions 2..n
112
+ // in flight. The scrim then blinked out for a fresh 250 ms in the middle of
113
+ // one continuous load.
114
+ const shownAfterDelay = useDelayedFlag(!!isVisible, flashDelayMs);
115
+ const shown = !!isVisible && (!!immediate || shownAfterDelay);
116
+ // only offer cancel after the overlay has been continuously visible for a few
117
+ // seconds, so a quick load can't be canceled by an accidental click.
118
+ //
119
+ // Keyed on `shown` rather than `isVisible`, which is what "continuously
120
+ // visible" means and is also what keeps this timer out of a zoom: a display
121
+ // refetching per animation frame flips `isVisible` a couple of times a frame,
122
+ // and each flip was a clearTimeout/setTimeout pair for a five-second delay
123
+ // that could never elapse — 368 timer installs over a ten-second gesture,
124
+ // half of them these.
125
+ const cancelableAfterDelay = useDelayedFlag(shown, cancelDelayMs);
126
+ const cancelable = shown && cancelableAfterDelay;
127
+ // Rendered only while shown. The content chip is `pointerEvents:auto`, so
128
+ // leaving it mounted (merely transparent) in the idle state would silently
129
+ // swallow clicks/hovers over the top-center of every track it overlays. There
130
+ // is no fade transition, so mount/unmount is visually identical to toggling
131
+ // opacity anyway.
132
+ return shown ? (_jsx("span", { className: classes.overlay, "data-testid": "loading-overlay", children: _jsx("span", { className: classes.content, children: canceled ? (_jsxs("span", { className: classes.row, children: [_jsx("span", { className: classes.text, children: "Loading canceled" }), onRetry ? (_jsx(Tooltip, { title: "Retry", children: _jsx(IconButton, { size: "small", "data-testid": "loading-overlay-retry", onClick: () => {
133
+ onRetry();
134
+ }, children: _jsx(RefreshIcon, { fontSize: "inherit" }) }) })) : null] })) : (_jsxs(_Fragment, { children: [_jsxs("span", { className: classes.row, children: [_jsxs("span", { className: classes.text, children: [progressLabel(statusMessage || 'Loading', progress), hasProgress ? null : _jsx(LoadingDots, {})] }), onCancel && cancelable ? (_jsx(Tooltip, { title: "Cancel", children: _jsx(IconButton, { size: "small", "data-testid": "loading-overlay-cancel", onClick: () => {
135
+ onCancel();
136
+ }, children: _jsx(CloseIcon, { fontSize: "inherit" }) }) })) : null] }), hasProgress ? (_jsx(StatusProgressBar, { className: classes.bar, fraction: progress })) : null] })) }) })) : null;
137
+ }
@@ -0,0 +1,16 @@
1
+ import type { TypographyProps } from '@mui/material';
2
+ /**
3
+ * The shared "labelled ellipses + optional determinate bar" body used by the
4
+ * loading/refetch indicators. Renders a {@link LoadingEllipses} label — with the
5
+ * rounded percent appended via {@link progressLabel} when `fraction` is
6
+ * determinate — and a determinate {@link StatusProgressBar} only when a
7
+ * `fraction` is present (an indeterminate phase shows just the animated label,
8
+ * no bar). Callers own the surrounding layout and supply `barClassName` for the
9
+ * bar width.
10
+ */
11
+ export default function LoadingProgress({ message, fraction, variant, barClassName, }: {
12
+ message?: string;
13
+ fraction?: number;
14
+ variant?: TypographyProps['variant'];
15
+ barClassName?: string;
16
+ }): import("react").JSX.Element;
@@ -0,0 +1,16 @@
1
+ import { Fragment as _Fragment, jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
2
+ import { progressLabel } from '../util/progress.js';
3
+ import LoadingEllipses from './LoadingEllipses.js';
4
+ import StatusProgressBar from './StatusProgressBar.js';
5
+ /**
6
+ * The shared "labelled ellipses + optional determinate bar" body used by the
7
+ * loading/refetch indicators. Renders a {@link LoadingEllipses} label — with the
8
+ * rounded percent appended via {@link progressLabel} when `fraction` is
9
+ * determinate — and a determinate {@link StatusProgressBar} only when a
10
+ * `fraction` is present (an indeterminate phase shows just the animated label,
11
+ * no bar). Callers own the surrounding layout and supply `barClassName` for the
12
+ * bar width.
13
+ */
14
+ export default function LoadingProgress({ message, fraction, variant, barClassName, }) {
15
+ return (_jsxs(_Fragment, { children: [_jsx(LoadingEllipses, { variant: variant, message: progressLabel(message || 'Loading', fraction) }), fraction === undefined ? null : (_jsx(StatusProgressBar, { className: barClassName, fraction: fraction }))] }));
16
+ }
package/esm/ui/Logo.d.ts CHANGED
@@ -2,6 +2,6 @@ type LogoVariant = 'color' | 'black' | 'white';
2
2
  interface LogoProps {
3
3
  variant?: LogoVariant;
4
4
  }
5
- export declare function Logomark({ variant }: LogoProps): import("react/jsx-runtime").JSX.Element;
6
- export declare function LogoFull({ variant }: LogoProps): import("react/jsx-runtime").JSX.Element;
5
+ export declare function Logomark({ variant }: LogoProps): import("react").JSX.Element;
6
+ export declare function LogoFull({ variant }: LogoProps): import("react").JSX.Element;
7
7
  export {};
package/esm/ui/Logo.js CHANGED
@@ -1,30 +1,29 @@
1
- import { jsx as _jsx, jsxs as _jsxs, Fragment as _Fragment } from "react/jsx-runtime";
2
- function getColors(variant) {
3
- if (variant === 'black') {
4
- return {
5
- midnight: '#808080',
6
- forrest: '#666666',
7
- grape: '#4d4d4d',
8
- mandarin: '#333333',
9
- gray: '#1a1a1a',
10
- };
11
- }
12
- if (variant === 'white') {
13
- return {
14
- midnight: '#ffffff',
15
- forrest: '#e6e6e6',
16
- grape: '#cccccc',
17
- mandarin: '#b3b3b3',
18
- gray: '#999999',
19
- };
20
- }
21
- return {
1
+ import { Fragment as _Fragment, jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
2
+ const colorSets = {
3
+ black: {
4
+ midnight: '#808080',
5
+ forest: '#666666',
6
+ grape: '#4d4d4d',
7
+ mandarin: '#333333',
8
+ gray: '#1a1a1a',
9
+ },
10
+ white: {
11
+ midnight: '#ffffff',
12
+ forest: '#e6e6e6',
13
+ grape: '#cccccc',
14
+ mandarin: '#b3b3b3',
15
+ gray: '#999999',
16
+ },
17
+ color: {
22
18
  midnight: '#0d233f',
23
- forrest: '#135560',
19
+ forest: '#135560',
24
20
  grape: '#721e63',
25
21
  mandarin: '#ffb11d',
26
22
  gray: '#dadada',
27
- };
23
+ },
24
+ };
25
+ function getColors(variant = 'color') {
26
+ return colorSets[variant];
28
27
  }
29
28
  export function Logomark({ variant }) {
30
29
  return (_jsx("svg", { viewBox: "0 0 175 175", children: _jsx(Icon, { variant: variant }) }));
@@ -34,7 +33,7 @@ export function LogoFull({ variant }) {
34
33
  }
35
34
  function Icon({ variant }) {
36
35
  const colors = getColors(variant);
37
- return (_jsxs(_Fragment, { children: [_jsx("path", { style: { fill: colors.midnight }, d: "M120.5,57.5c.168,0,.333.012.5.013V40.506c-.167,0-.333-.006-.5-.006a98.325,98.325,0,0,0-77.4,37.565q-2.664,3.378-5.023,6.994l14.206,9.327Q54.043,91.709,56,89.179A81.363,81.363,0,0,1,120.5,57.5Z" }), _jsx("path", { style: { fill: colors.forrest }, d: "M148.668,86.223c.308.133.6.283.908.42l6.746-15.618c-.153-.067-.3-.143-.454-.21a81.36,81.36,0,0,0-71.777,3.5q-2.8,1.544-5.469,3.309l9.249,14.054A63.93,63.93,0,0,1,148.668,86.223Z" }), _jsx("path", { style: { fill: colors.grape }, d: "M170.894,109.37A63.929,63.929,0,0,0,113.4,88.861l2.336,15.474a48.456,48.456,0,0,1,44.322,15.42c.111.125.214.255.324.381l11.16-10C171.323,109.879,171.118,109.62,170.894,109.37Z" }), _jsx("path", { style: { fill: colors.mandarin }, d: "M150.921,150.314c.04.163.07.326.107.489l16.509-4.058c-.039-.163-.067-.326-.107-.489A48.457,48.457,0,0,0,135.575,111.8l-5.515,15.591A32.466,32.466,0,0,1,150.921,150.314Z" }), _jsx("path", { style: { fill: colors.gray }, d: "M134.1,138.129l-9.779,13.213a32.486,32.486,0,0,1,7.823,14.463l15.147.852c.012-.166.032-.331.041-.5A32.464,32.464,0,0,0,134.1,138.129Z" })] }));
36
+ return (_jsxs(_Fragment, { children: [_jsx("path", { style: { fill: colors.midnight }, d: "M120.5,57.5c.168,0,.333.012.5.013V40.506c-.167,0-.333-.006-.5-.006a98.325,98.325,0,0,0-77.4,37.565q-2.664,3.378-5.023,6.994l14.206,9.327Q54.043,91.709,56,89.179A81.363,81.363,0,0,1,120.5,57.5Z" }), _jsx("path", { style: { fill: colors.forest }, d: "M148.668,86.223c.308.133.6.283.908.42l6.746-15.618c-.153-.067-.3-.143-.454-.21a81.36,81.36,0,0,0-71.777,3.5q-2.8,1.544-5.469,3.309l9.249,14.054A63.93,63.93,0,0,1,148.668,86.223Z" }), _jsx("path", { style: { fill: colors.grape }, d: "M170.894,109.37A63.929,63.929,0,0,0,113.4,88.861l2.336,15.474a48.456,48.456,0,0,1,44.322,15.42c.111.125.214.255.324.381l11.16-10C171.323,109.879,171.118,109.62,170.894,109.37Z" }), _jsx("path", { style: { fill: colors.mandarin }, d: "M150.921,150.314c.04.163.07.326.107.489l16.509-4.058c-.039-.163-.067-.326-.107-.489A48.457,48.457,0,0,0,135.575,111.8l-5.515,15.591A32.466,32.466,0,0,1,150.921,150.314Z" }), _jsx("path", { style: { fill: colors.gray }, d: "M134.1,138.129l-9.779,13.213a32.486,32.486,0,0,1,7.823,14.463l15.147.852c.012-.166.032-.331.041-.5A32.464,32.464,0,0,0,134.1,138.129Z" })] }));
38
37
  }
39
38
  function Text({ variant }) {
40
39
  const colors = getColors(variant);
package/esm/ui/Menu.js CHANGED
@@ -1 +1 @@
1
- export { default } from "./CascadingMenu.js";
1
+ export { default } from './CascadingMenu.js';
@@ -0,0 +1,3 @@
1
+ export declare function MenuItemChevron({ hidden }: {
2
+ hidden?: boolean;
3
+ }): import("react").JSX.Element;
@@ -0,0 +1,19 @@
1
+ import { jsx as _jsx } from "react/jsx-runtime";
2
+ import ChevronRight from '@mui/icons-material/ChevronRight';
3
+ // The chevron a submenu row ends in, and — `hidden` — an invisible copy
4
+ // reserving the identical footprint on a clickable row that has none, so a menu
5
+ // carrying help on both kinds lands every "?" in one column.
6
+ //
7
+ // ONE COMPONENT, because "identical footprint" is the whole contract and two
8
+ // bodies can drift: a `fontSize` added to one and not the other reintroduces
9
+ // exactly the misalignment this exists to remove.
10
+ //
11
+ // A COPY, not a width. The column was a hard-coded 24, the px an MUI
12
+ // `fontSize="medium"` icon is at MUI's own defaults. This theme sets
13
+ // `typography.fontSize: 12`, which scales `pxToRem` by 12/14, so the chevron
14
+ // actually draws at ~20.6px and every clickable row's "?" sat ~3.4px inboard of
15
+ // the submenu rows'. Rendering the icon itself cannot be off by a scale factor
16
+ // nothing here gets to see.
17
+ export function MenuItemChevron({ hidden }) {
18
+ return _jsx(ChevronRight, { style: hidden ? { visibility: 'hidden' } : undefined });
19
+ }
@@ -0,0 +1,4 @@
1
+ export declare function MenuItemEndDecoration({ type, checked, }: {
2
+ type: 'checkbox' | 'radio';
3
+ checked: boolean;
4
+ }): import("react").JSX.Element;
@@ -0,0 +1,28 @@
1
+ import { jsx as _jsx } from "react/jsx-runtime";
2
+ import CheckBoxIcon from '@mui/icons-material/CheckBox';
3
+ import CheckBoxOutlineBlankIcon from '@mui/icons-material/CheckBoxOutlineBlank';
4
+ import RadioButtonCheckedIcon from '@mui/icons-material/RadioButtonChecked';
5
+ import RadioButtonUncheckedIcon from '@mui/icons-material/RadioButtonUnchecked';
6
+ import { makeStyles } from '../util/tss-react/index.js';
7
+ const useStyles = makeStyles()({
8
+ menuItemEndDecoration: {
9
+ padding: 0,
10
+ margin: 0,
11
+ height: 16,
12
+ },
13
+ });
14
+ export function MenuItemEndDecoration({ type, checked, }) {
15
+ const { classes } = useStyles();
16
+ let icon;
17
+ switch (type) {
18
+ case 'checkbox': {
19
+ icon = checked ? (_jsx(CheckBoxIcon, {})) : (_jsx(CheckBoxOutlineBlankIcon, { color: "action" }));
20
+ break;
21
+ }
22
+ case 'radio': {
23
+ icon = checked ? (_jsx(RadioButtonCheckedIcon, {})) : (_jsx(RadioButtonUncheckedIcon, { color: "action" }));
24
+ break;
25
+ }
26
+ }
27
+ return _jsx("div", { className: classes.menuItemEndDecoration, children: icon });
28
+ }
@@ -0,0 +1,12 @@
1
+ import type { ClickableMenuItem, SubMenuItem } from './MenuTypes.ts';
2
+ export type DecoratedMenuItem = ClickableMenuItem | SubMenuItem;
3
+ export interface MenuColumnFlags {
4
+ hasCheckboxOrRadioWithHelp: boolean;
5
+ hasEndAdornment: boolean;
6
+ hasSubmenuWithHelp: boolean;
7
+ sharedActionColumn: boolean;
8
+ }
9
+ export declare function MenuItemTrailing({ item, columns: { hasCheckboxOrRadioWithHelp, hasEndAdornment, hasSubmenuWithHelp, sharedActionColumn, }, }: {
10
+ item: DecoratedMenuItem;
11
+ columns: MenuColumnFlags;
12
+ }): import("react").JSX.Element;
@@ -0,0 +1,42 @@
1
+ import { Fragment as _Fragment, jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
2
+ import CascadingMenuHelpIconButton, { CascadingMenuHelpIconSpacer, } from './CascadingMenuHelpIconButton.js';
3
+ import { MenuItemChevron } from './MenuItemChevron.js';
4
+ import { MenuItemEndDecoration } from './MenuItemEndDecoration.js';
5
+ import { menuItemAdornment } from './menuItemAdornment.js';
6
+ // gap that sets the value glyph (row state) apart from the trailing help/pin
7
+ // action column, so a busy row reads as "value | actions" not one dense cluster
8
+ const valueActionGap = 8;
9
+ // fixed footprint reserved for the endAdornment column so pins right-align
10
+ const endAdornmentColumnWidth = 28;
11
+ // The checkbox/radio glyph reflecting a row's value. Held slightly apart from
12
+ // the action column when the menu has one, so state and actions don't blur.
13
+ function MenuItemValueGlyph({ type, checked, separated, }) {
14
+ return (_jsx("div", { style: { marginRight: separated ? valueActionGap : 0 }, children: _jsx(MenuItemEndDecoration, { type: type, checked: checked }) }));
15
+ }
16
+ // Fixed-width column holding an item's endAdornment (e.g. the "default for all"
17
+ // pin). Reserved on every row of a menu that has any adornment so they
18
+ // right-align into their own column.
19
+ function MenuItemEndAdornmentSlot({ children }) {
20
+ return (_jsx("div", { style: {
21
+ width: endAdornmentColumnWidth,
22
+ display: 'flex',
23
+ justifyContent: 'flex-end',
24
+ alignItems: 'center',
25
+ }, children: children }));
26
+ }
27
+ // Everything trailing a menu row's label, for a clickable row and a submenu row
28
+ // alike: a flex spacer that right-aligns the decorations, then the value glyph,
29
+ // help affordance, endAdornment column, and the chevron column. When
30
+ // `sharedActionColumn` is set, no row in the menu combines help with an
31
+ // adornment, so the two share one trailing column (whichever this row has)
32
+ // rather than each claiming its own.
33
+ export function MenuItemTrailing({ item, columns: { hasCheckboxOrRadioWithHelp, hasEndAdornment, hasSubmenuWithHelp, sharedActionColumn, }, }) {
34
+ const isSubmenu = 'subMenu' in item;
35
+ const isCheckOrRadio = item.type === 'checkbox' || item.type === 'radio';
36
+ const hasActionColumn = hasCheckboxOrRadioWithHelp || hasEndAdornment;
37
+ // a disabled row can't open the help popover (pointer-events:none), so its
38
+ // helpText is surfaced as a hover tooltip by the row instead
39
+ const helpButton = item.helpText && !item.disabled ? (_jsx(CascadingMenuHelpIconButton, { helpText: item.helpText, label: item.label })) : undefined;
40
+ return (_jsxs(_Fragment, { children: [_jsx("div", { style: { flexGrow: 1, minWidth: 10 } }), isCheckOrRadio ? (_jsx(MenuItemValueGlyph, { type: item.type, checked: item.checked, separated: hasActionColumn })) : null, sharedActionColumn ? (_jsx(MenuItemEndAdornmentSlot, { children: helpButton ?? menuItemAdornment(item) })) : (_jsxs(_Fragment, { children: [helpButton ??
41
+ (isCheckOrRadio && hasCheckboxOrRadioWithHelp ? (_jsx(CascadingMenuHelpIconSpacer, {})) : null), hasEndAdornment ? (_jsx(MenuItemEndAdornmentSlot, { children: menuItemAdornment(item) })) : null] })), isSubmenu ? (_jsx(MenuItemChevron, {})) : hasSubmenuWithHelp ? (_jsx(MenuItemChevron, { hidden: true })) : null] }));
42
+ }