@jbrowse/core 4.3.0 → 5.0.0-beta.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +822 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +13 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +33 -22
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +8 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +117 -19
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -8
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +12 -5
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +28 -17
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -40
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +6 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +46 -30
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +20 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +66 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +17 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +3 -9
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +3 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +7 -14
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +2 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +19 -13
- package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +5 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +8 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +32 -10
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +18 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +7 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +62 -24
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +10 -5
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +64 -41
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +17 -8
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +19 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +5 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +15 -18
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +33 -17
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +3 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +7 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +11 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +29 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -6
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +18 -6
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +11 -29
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +9 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +63 -58
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +7 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +38 -51
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +19 -27
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +18 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +12 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +97 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +50 -63
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +62 -59
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.d.ts +21 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.js +24 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +5 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +93 -75
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +4 -11
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +5 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +21 -48
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.js +20 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +6 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +33 -13
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +7 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +67 -11
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.d.ts +14 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.js +42 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +7 -7
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +9 -9
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +28 -44
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.d.ts +23 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.js +31 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +90 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +145 -23
- package/esm/BaseFeatureWidget/configSchema.js +1 -1
- package/esm/BaseFeatureWidget/formatDetails.d.ts +38 -0
- package/esm/BaseFeatureWidget/formatDetails.js +103 -0
- package/esm/BaseFeatureWidget/index.d.ts +3 -1
- package/esm/BaseFeatureWidget/index.js +2 -2
- package/esm/BaseFeatureWidget/stateModelFactory.d.ts +80 -62
- package/esm/BaseFeatureWidget/stateModelFactory.js +128 -29
- package/esm/BaseFeatureWidget/types.d.ts +4 -3
- package/esm/BaseFeatureWidget/util.d.ts +4 -29
- package/esm/BaseFeatureWidget/util.js +20 -84
- package/esm/CorePlugin.js +11 -6
- package/esm/PhasedScheduler.d.ts +4 -2
- package/esm/PhasedScheduler.js +18 -2
- package/esm/Plugin.d.ts +6 -1
- package/esm/Plugin.js +7 -0
- package/esm/PluginLoader.d.ts +41 -40
- package/esm/PluginLoader.js +206 -78
- package/esm/PluginManager.d.ts +421 -55
- package/esm/PluginManager.js +461 -89
- package/esm/ReExports/BaseFeatureDetails.js +7 -6
- package/esm/ReExports/MuiDataGridReExports.d.ts +2 -2
- package/esm/ReExports/MuiDataGridReExports.js +58 -130
- package/esm/ReExports/MuiReExports.d.ts +3 -134
- package/esm/ReExports/MuiReExports.js +43 -16
- package/esm/ReExports/MuiStylesReExports.d.ts +66 -0
- package/esm/ReExports/MuiStylesReExports.js +55 -0
- package/esm/ReExports/index.js +1 -1
- package/esm/ReExports/lazify.d.ts +2 -2
- package/esm/ReExports/lazify.js +16 -3
- package/esm/ReExports/list.js +54 -229
- package/esm/ReExports/modules.js +62 -93
- package/esm/ReExports/muiComponentNames.d.ts +18 -0
- package/esm/ReExports/muiComponentNames.js +130 -0
- package/esm/ReExports/publicUtil.d.ts +1 -0
- package/esm/ReExports/publicUtil.js +28 -0
- package/esm/ReExports/registry.d.ts +2 -0
- package/esm/ReExports/registry.js +28 -0
- package/esm/ReExports/sharedModules.d.ts +96 -0
- package/esm/ReExports/sharedModules.js +59 -0
- package/esm/ReExports/uiStub.d.ts +1 -0
- package/esm/ReExports/uiStub.js +13 -0
- package/esm/ReExports/workerModules.d.ts +2 -0
- package/esm/ReExports/workerModules.js +10 -0
- package/esm/TextSearch/BaseResults.d.ts +20 -21
- package/esm/TextSearch/BaseResults.js +8 -33
- package/esm/TextSearch/TextSearchManager.d.ts +14 -34
- package/esm/TextSearch/TextSearchManager.js +87 -34
- package/esm/assemblyManager/assembly.d.ts +307 -34
- package/esm/assemblyManager/assembly.js +551 -262
- package/esm/assemblyManager/assemblyAdapters.d.ts +12 -0
- package/esm/assemblyManager/assemblyAdapters.js +18 -0
- package/esm/assemblyManager/assemblyConfigSchema.d.ts +192 -17
- package/esm/assemblyManager/assemblyConfigSchema.js +213 -19
- package/esm/assemblyManager/assemblyManager.d.ts +711 -303
- package/esm/assemblyManager/assemblyManager.js +351 -46
- package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +32 -0
- package/esm/assemblyManager/expandAssemblyConfigShorthand.js +85 -0
- package/esm/assemblyManager/geneticCodes.d.ts +21 -0
- package/esm/assemblyManager/geneticCodes.js +47 -0
- package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +9 -0
- package/esm/assemblyManager/getSequenceAdapterConfig.js +12 -0
- package/esm/assemblyManager/index.d.ts +1 -1
- package/esm/assemblyManager/index.js +2 -2
- package/esm/assemblyManager/loadRefNameMap.d.ts +5 -0
- package/esm/assemblyManager/loadRefNameMap.js +80 -0
- package/esm/assemblyManager/refNameColors.d.ts +1 -0
- package/esm/assemblyManager/refNameColors.js +32 -0
- package/esm/assemblyManager/refNameMaps.d.ts +26 -0
- package/esm/assemblyManager/refNameMaps.js +87 -0
- package/esm/assemblyManager/refNameMismatch.d.ts +54 -0
- package/esm/assemblyManager/refNameMismatch.js +66 -0
- package/esm/checkPlugins.d.ts +11 -0
- package/esm/checkPlugins.js +77 -0
- package/esm/configuration/configurationSchema.d.ts +122 -20
- package/esm/configuration/configurationSchema.js +374 -140
- package/esm/configuration/configurationSlot.d.ts +283 -30
- package/esm/configuration/configurationSlot.js +205 -226
- package/esm/configuration/formatAboutConfigSchema.d.ts +55 -0
- package/esm/configuration/formatAboutConfigSchema.js +58 -0
- package/esm/configuration/formatDetailsConfigSchema.d.ts +80 -0
- package/esm/configuration/formatDetailsConfigSchema.js +90 -0
- package/esm/configuration/fullConfSnapshot.d.ts +28 -0
- package/esm/configuration/fullConfSnapshot.js +66 -0
- package/esm/configuration/getConf.d.ts +88 -0
- package/esm/configuration/getConf.js +74 -0
- package/esm/configuration/index.d.ts +19 -3
- package/esm/configuration/index.js +19 -2
- package/esm/configuration/mergeFormatCallbacks.d.ts +15 -0
- package/esm/configuration/mergeFormatCallbacks.js +24 -0
- package/esm/configuration/promotableDefaults.d.ts +199 -0
- package/esm/configuration/promotableDefaults.js +332 -0
- package/esm/configuration/promotablePin.d.ts +55 -0
- package/esm/configuration/promotableResolve.d.ts +108 -0
- package/esm/configuration/promotableResolve.js +117 -0
- package/esm/configuration/promotableSlots.d.ts +12 -0
- package/esm/configuration/promotableSlots.js +45 -0
- package/esm/configuration/readConfObject.d.ts +56 -0
- package/esm/configuration/readConfObject.js +161 -0
- package/esm/configuration/schemaRegistry.d.ts +35 -0
- package/esm/configuration/schemaRegistry.js +50 -0
- package/esm/configuration/schemaTypes.d.ts +23 -0
- package/esm/configuration/schemaTypes.js +94 -0
- package/esm/configuration/slotFacade.d.ts +82 -0
- package/esm/configuration/slotFacade.js +89 -0
- package/esm/configuration/slotShape.d.ts +12 -0
- package/esm/configuration/slotShape.js +84 -0
- package/esm/configuration/slotValueUtils.d.ts +17 -0
- package/esm/configuration/slotValueUtils.js +25 -0
- package/esm/configuration/tabixIndexFields.d.ts +44 -0
- package/esm/configuration/tabixIndexFields.js +45 -0
- package/esm/configuration/tabixShorthand.d.ts +34 -0
- package/esm/configuration/tabixShorthand.js +45 -0
- package/esm/configuration/types.d.ts +170 -7
- package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +24 -10
- package/esm/data_adapters/BaseAdapter/BaseAdapter.js +23 -15
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +132 -7
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +136 -25
- package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +1 -0
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +13 -5
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +9 -7
- package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +2 -1
- package/esm/data_adapters/BaseAdapter/CytobandAdapter.d.ts +7 -0
- package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +2 -1
- package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +29 -0
- package/esm/data_adapters/BaseAdapter/featureDensity.js +17 -0
- package/esm/data_adapters/BaseAdapter/getAdapterId.d.ts +2 -0
- package/esm/data_adapters/BaseAdapter/getAdapterId.js +9 -0
- package/esm/data_adapters/BaseAdapter/index.d.ts +7 -4
- package/esm/data_adapters/BaseAdapter/index.js +6 -5
- package/esm/data_adapters/BaseAdapter/stats.d.ts +37 -5
- package/esm/data_adapters/BaseAdapter/stats.js +89 -24
- package/esm/data_adapters/BaseAdapter/types.d.ts +11 -8
- package/esm/data_adapters/BaseAdapter/types.js +1 -0
- package/esm/data_adapters/BaseAdapter/util.d.ts +5 -1
- package/esm/data_adapters/BaseAdapter/util.js +14 -3
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +1 -1
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +4 -4
- package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +36 -4
- package/esm/data_adapters/CytobandAdapter/configSchema.js +46 -2
- package/esm/data_adapters/CytobandAdapter/index.js +3 -3
- package/esm/data_adapters/adapterSessionRefcount.d.ts +61 -0
- package/esm/data_adapters/adapterSessionRefcount.js +96 -0
- package/esm/data_adapters/dataAdapterCache.d.ts +35 -1
- package/esm/data_adapters/dataAdapterCache.js +62 -22
- package/esm/data_adapters/getFeatureAdapter.d.ts +22 -0
- package/esm/data_adapters/getFeatureAdapter.js +27 -0
- package/esm/data_adapters/getSequenceSubAdapter.d.ts +21 -0
- package/esm/data_adapters/getSequenceSubAdapter.js +44 -0
- package/esm/pluggableElementTypes/AdapterType.d.ts +52 -2
- package/esm/pluggableElementTypes/AdapterType.js +44 -5
- package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +6 -1
- package/esm/pluggableElementTypes/AddTrackWorkflowType.js +3 -1
- package/esm/pluggableElementTypes/ConnectionType.d.ts +5 -5
- package/esm/pluggableElementTypes/ConnectionType.js +1 -1
- package/esm/pluggableElementTypes/DisplayType.d.ts +19 -10
- package/esm/pluggableElementTypes/DisplayType.js +53 -5
- package/esm/pluggableElementTypes/InternetAccountType.js +1 -1
- package/esm/pluggableElementTypes/PluggableElementBase.d.ts +13 -0
- package/esm/pluggableElementTypes/PluggableElementBase.js +13 -0
- package/esm/pluggableElementTypes/RpcMethodType.d.ts +132 -12
- package/esm/pluggableElementTypes/RpcMethodType.js +263 -98
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +19 -9
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +26 -20
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.d.ts +5 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.js +18 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.d.ts +5 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.js +10 -0
- package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +3 -3
- package/esm/pluggableElementTypes/TextSearchAdapterType.js +3 -1
- package/esm/pluggableElementTypes/TrackType.d.ts +2 -1
- package/esm/pluggableElementTypes/TrackType.js +1 -1
- package/esm/pluggableElementTypes/ViewType.d.ts +27 -3
- package/esm/pluggableElementTypes/ViewType.js +84 -4
- package/esm/pluggableElementTypes/WidgetType.d.ts +2 -2
- package/esm/pluggableElementTypes/WidgetType.js +1 -1
- package/esm/pluggableElementTypes/addMenuItems.d.ts +87 -0
- package/esm/pluggableElementTypes/addMenuItems.js +82 -0
- package/esm/pluggableElementTypes/extendElementType.d.ts +30 -0
- package/esm/pluggableElementTypes/extendElementType.js +73 -0
- package/esm/pluggableElementTypes/index.d.ts +7 -7
- package/esm/pluggableElementTypes/index.js +24 -14
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +70 -15
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +90 -10
- package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +646 -84
- package/esm/pluggableElementTypes/models/BaseDisplayModel.js +241 -60
- package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +216 -35
- package/esm/pluggableElementTypes/models/BaseTrackModel.js +365 -83
- package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +216 -16
- package/esm/pluggableElementTypes/models/BaseViewModel.js +150 -16
- package/esm/pluggableElementTypes/models/HighlightsMixin.d.ts +51 -0
- package/esm/pluggableElementTypes/models/HighlightsMixin.js +78 -0
- package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +163 -29
- package/esm/pluggableElementTypes/models/InternetAccountModel.js +218 -48
- package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +177 -0
- package/esm/pluggableElementTypes/models/assertDisplayContract.js +239 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +22 -8
- package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -2
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +39 -20
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +23 -2
- package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +181 -65
- package/esm/pluggableElementTypes/models/baseTrackConfig.js +191 -89
- package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +3 -8
- package/esm/pluggableElementTypes/models/components/SaveTrackData.js +113 -139
- package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +55 -0
- package/esm/pluggableElementTypes/models/components/fetchTrackData.js +83 -0
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +40 -0
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +115 -0
- package/esm/pluggableElementTypes/models/index.d.ts +6 -3
- package/esm/pluggableElementTypes/models/index.js +10 -8
- package/esm/pluggableElementTypes/models/migrateTrackConfig.d.ts +34 -0
- package/esm/pluggableElementTypes/models/migrateTrackConfig.js +54 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +75 -7
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +9 -3
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +153 -103
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +6 -1
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +70 -74
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +9 -1
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.d.ts +21 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.js +51 -0
- package/esm/pluggableElementTypes/models/uriMatchesDomains.d.ts +29 -0
- package/esm/pluggableElementTypes/models/uriMatchesDomains.js +62 -0
- package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.d.ts +5 -4
- package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.js +20 -10
- package/esm/pluginDefinitions.d.ts +198 -0
- package/esm/pluginDefinitions.js +220 -0
- package/esm/rpc/BaseRpcDriver.d.ts +27 -35
- package/esm/rpc/BaseRpcDriver.js +74 -107
- package/esm/rpc/MainThreadRpcDriver.d.ts +9 -10
- package/esm/rpc/MainThreadRpcDriver.js +18 -29
- package/esm/rpc/RpcClient.d.ts +38 -0
- package/esm/rpc/RpcClient.js +154 -0
- package/esm/rpc/RpcManager.d.ts +116 -27
- package/esm/rpc/RpcManager.js +177 -50
- package/esm/rpc/RpcRegistry.d.ts +275 -0
- package/esm/rpc/RpcRegistry.js +1 -0
- package/esm/rpc/RpcServer.d.ts +41 -0
- package/esm/rpc/RpcServer.js +235 -0
- package/esm/rpc/WebWorkerRpcDriver.d.ts +71 -24
- package/esm/rpc/WebWorkerRpcDriver.js +312 -27
- package/esm/rpc/byteBudget.d.ts +58 -0
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- package/esm/util/nextTick.d.ts +0 -1
- package/esm/util/nextTick.js +0 -3
- package/esm/util/offscreenCanvasGetSerializingSvg.d.ts +0 -5
- package/esm/util/offscreenCanvasGetSerializingSvg.js +0 -9
- package/esm/util/offscreenCanvasUtils.d.ts +0 -12
- package/esm/util/offscreenCanvasUtils.js +0 -19
- package/esm/util/renderToAbstractCanvas.d.ts +0 -17
- package/esm/util/renderToAbstractCanvas.js +0 -53
- package/esm/util/transferables.d.ts +0 -2
- package/esm/util/transferables.js +0 -35
- package/esm/util/tss-react/mui/index.d.ts +0 -1
- package/esm/util/tss-react/mui/index.js +0 -1
- package/esm/util/tss-react/mui/mui.d.ts +0 -10
- package/esm/util/tss-react/mui/mui.js +0 -5
- package/esm/util/when.d.ts +0 -1
- package/esm/util/when.js +0 -1
- /package/esm/{data_adapters/BaseAdapter/BaseOptions.js → configuration/promotablePin.js} +0 -0
- /package/esm/{util/layouts/BaseLayout.js → data_adapters/BaseAdapter/CytobandAdapter.js} +0 -0
package/esm/ui/ColorPicker.d.ts
CHANGED
|
@@ -1,15 +1,12 @@
|
|
|
1
|
-
export declare
|
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2
|
-
color: string;
|
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3
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-
onChange: (color: string) => void;
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|
4
|
-
}) => import("react/jsx-runtime").JSX.Element;
|
|
5
|
-
export declare function ColorPopover({ anchorEl, onChange, onClose, color, }: {
|
|
1
|
+
export declare function ColorPopover({ anchorEl, onChange, onClose, color, presetAlpha, }: {
|
|
6
2
|
color: string;
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7
3
|
anchorEl: HTMLElement | null;
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8
4
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onChange: (val: string) => void;
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9
5
|
onClose: () => void;
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10
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-
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11
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-
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6
|
+
presetAlpha?: number;
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|
7
|
+
}): import("react").JSX.Element;
|
|
8
|
+
export default function ColorPicker({ onChange, color, presetAlpha, }: {
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|
12
9
|
color: string;
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13
10
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onChange: (val: string) => void;
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-
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15
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-
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11
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presetAlpha?: number;
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12
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+
}): import("react").JSX.Element;
|
package/esm/ui/ColorPicker.js
CHANGED
|
@@ -1,62 +1,59 @@
|
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|
1
1
|
import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
|
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2
2
|
import { useState } from 'react';
|
|
3
|
-
import { colord } from '@jbrowse/core/util/colord';
|
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4
|
-
import { makeStyles } from '@jbrowse/core/util/tss-react';
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5
3
|
import { MenuItem, Popover, Select, TextField } from '@mui/material';
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6
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-
import
|
|
7
|
-
import {
|
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8
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-
import {
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4
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+
import { colord } from '../util/colord.js';
|
|
5
|
+
import { useDebounce, useLocalStorage } from '../util/hooks.js';
|
|
6
|
+
import { makeStyles } from '../util/tss-react/index.js';
|
|
7
|
+
import { swatchStyle } from './colorSwatchStyle.js';
|
|
8
|
+
import { paletteColors } from './colors.js';
|
|
9
|
+
import { RgbaStringColorPicker } from './react-colorful.js';
|
|
10
|
+
// note: we are using a vendored copy of react-colorful because the default
|
|
11
|
+
// uses pure-ESM which is difficult to make pass with jest e.g.
|
|
12
|
+
// https://stackoverflow.com/questions/58613492/how-to-resolve-cannot-use-import-statement-outside-a-module-in-jest
|
|
9
13
|
const useStyles = makeStyles()({
|
|
10
|
-
|
|
14
|
+
root: {
|
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15
|
+
display: 'flex',
|
|
16
|
+
padding: 10,
|
|
17
|
+
},
|
|
18
|
+
column: {
|
|
19
|
+
width: 200,
|
|
20
|
+
margin: 5,
|
|
21
|
+
},
|
|
11
22
|
swatches: {
|
|
12
23
|
display: 'flex',
|
|
13
24
|
padding: 12,
|
|
14
25
|
flexWrap: 'wrap',
|
|
15
26
|
},
|
|
16
|
-
swatch:
|
|
17
|
-
width: 24,
|
|
18
|
-
height: 24,
|
|
19
|
-
margin: 4,
|
|
20
|
-
border: 'none',
|
|
21
|
-
padding: 0,
|
|
22
|
-
cursor: 'pointer',
|
|
23
|
-
outline: 'none',
|
|
24
|
-
},
|
|
27
|
+
swatch: swatchStyle,
|
|
25
28
|
});
|
|
26
|
-
|
|
27
|
-
|
|
28
|
-
|
|
29
|
-
|
|
30
|
-
|
|
31
|
-
|
|
32
|
-
setAnchorEl(null);
|
|
33
|
-
}, color: color, onChange: onChange })] }));
|
|
34
|
-
};
|
|
35
|
-
export function ColorPopover({ anchorEl, onChange, onClose, color, }) {
|
|
36
|
-
return (_jsx(Popover, { open: !!anchorEl, anchorEl: anchorEl, onClose: onClose, children: _jsx(ColorPicker, { color: color, onChange: onChange }) }));
|
|
29
|
+
const palettes = Object.keys(paletteColors);
|
|
30
|
+
function isPaletteType(s) {
|
|
31
|
+
return Object.hasOwn(paletteColors, s);
|
|
32
|
+
}
|
|
33
|
+
export function ColorPopover({ anchorEl, onChange, onClose, color, presetAlpha, }) {
|
|
34
|
+
return (_jsx(Popover, { open: !!anchorEl, anchorEl: anchorEl, onClose: onClose, children: _jsx(ColorPicker, { color: color, onChange: onChange, presetAlpha: presetAlpha }) }));
|
|
37
35
|
}
|
|
38
|
-
export function ColorPicker({ onChange, color, }) {
|
|
36
|
+
export default function ColorPicker({ onChange, color, presetAlpha, }) {
|
|
39
37
|
const { classes } = useStyles();
|
|
40
|
-
const [
|
|
41
|
-
|
|
42
|
-
|
|
38
|
+
const [storedPalette, setStoredPalette] = useLocalStorage('colorPickerPalette', 'set1');
|
|
39
|
+
// a stale localStorage value (e.g. a palette since renamed/removed) would
|
|
40
|
+
// index to undefined and crash the swatch map below
|
|
41
|
+
const palette = isPaletteType(storedPalette) ? storedPalette : 'set1';
|
|
42
|
+
const presetColors = paletteColors[palette];
|
|
43
43
|
const [text, setText] = useState(color);
|
|
44
44
|
const rgb = colord(color).toRgbString();
|
|
45
45
|
const rgbDebounced = useDebounce(rgb, 1000);
|
|
46
46
|
const handleChange = (val) => {
|
|
47
47
|
setText(val);
|
|
48
|
-
|
|
49
|
-
onChange(colord(val).toRgbString());
|
|
50
|
-
}
|
|
51
|
-
catch (e) { }
|
|
48
|
+
onChange(colord(val).toRgbString());
|
|
52
49
|
};
|
|
53
|
-
return (_jsxs("div", {
|
|
54
|
-
|
|
55
|
-
setVal(pal);
|
|
50
|
+
return (_jsxs("div", { className: classes.root, children: [_jsx("div", { className: classes.column, children: _jsx(RgbaStringColorPicker, { color: rgbDebounced, onChange: handleChange }) }), _jsxs("div", { className: classes.column, children: [_jsx(Select, { value: palette, onChange: event => {
|
|
51
|
+
setStoredPalette(event.target.value);
|
|
56
52
|
}, children: palettes.map(p => (_jsx(MenuItem, { value: p, children: p }, p))) }), _jsx("div", { className: classes.swatches, children: presetColors.map((presetColor, idx) => (_jsx("button", { type: "button", className: classes.swatch, style: { background: presetColor }, onClick: () => {
|
|
57
|
-
handleChange(
|
|
53
|
+
handleChange(presetAlpha === undefined
|
|
54
|
+
? presetColor
|
|
55
|
+
: colord(presetColor).alpha(presetAlpha).toRgbString());
|
|
58
56
|
} }, `${presetColor}-${idx}`))) }), _jsx(TextField, { helperText: 'Manually set color (hex, rgb, or css color name)', value: text, onChange: event => {
|
|
59
57
|
handleChange(event.target.value);
|
|
60
58
|
} })] })] }));
|
|
61
59
|
}
|
|
62
|
-
export default PopoverPicker;
|
|
@@ -1,10 +1,3 @@
|
|
|
1
|
-
import type {
|
|
2
|
-
|
|
3
|
-
header?: React.ReactNode;
|
|
4
|
-
onCancel: () => void;
|
|
5
|
-
onSubmit: () => void;
|
|
6
|
-
cancelText?: string;
|
|
7
|
-
submitText?: string;
|
|
8
|
-
}
|
|
9
|
-
declare const ConfirmDialog: (props: Props) => import("react/jsx-runtime").JSX.Element;
|
|
1
|
+
import type { SubmitDialogProps } from './SubmitDialog.tsx';
|
|
2
|
+
declare const ConfirmDialog: (props: SubmitDialogProps) => import("react").JSX.Element;
|
|
10
3
|
export default ConfirmDialog;
|
package/esm/ui/ConfirmDialog.js
CHANGED
|
@@ -1,13 +1,10 @@
|
|
|
1
|
-
import { jsx as _jsx
|
|
2
|
-
import { Button, DialogActions, DialogContent } from '@mui/material';
|
|
1
|
+
import { jsx as _jsx } from "react/jsx-runtime";
|
|
3
2
|
import { observer } from 'mobx-react';
|
|
4
|
-
import
|
|
3
|
+
import SubmitDialog from './SubmitDialog.js';
|
|
4
|
+
// ConfirmDialog is a SubmitDialog framed as a yes/no confirmation: the action
|
|
5
|
+
// button defaults to "OK" instead of "Submit". Enter submits, Escape/Cancel
|
|
6
|
+
// dismisses.
|
|
5
7
|
const ConfirmDialog = observer(function ConfirmDialog(props) {
|
|
6
|
-
|
|
7
|
-
return (_jsxs(Dialog, { onClose: onCancel, ...props, children: [_jsx(DialogContent, { children: children }), _jsxs(DialogActions, { children: [_jsx(Button, { color: "secondary", variant: "contained", onClick: () => {
|
|
8
|
-
onCancel();
|
|
9
|
-
}, children: cancelText }), _jsx(Button, { color: "primary", variant: "contained", onClick: () => {
|
|
10
|
-
onSubmit();
|
|
11
|
-
}, children: submitText })] })] }));
|
|
8
|
+
return _jsx(SubmitDialog, { submitText: "OK", ...props });
|
|
12
9
|
});
|
|
13
10
|
export default ConfirmDialog;
|
|
@@ -0,0 +1,50 @@
|
|
|
1
|
+
import type { MenuItemsGetter } from './MenuTypes.ts';
|
|
2
|
+
/**
|
|
3
|
+
* Where the menu opens, in viewport coordinates — i.e. an event's
|
|
4
|
+
* `clientX`/`clientY`, whatever produced it (a right-click, the release of a
|
|
5
|
+
* drag-selection). `undefined` is the closed state: displays keep the click
|
|
6
|
+
* point and the menu's open-ness as one value rather than two that can
|
|
7
|
+
* disagree.
|
|
8
|
+
*/
|
|
9
|
+
export interface ContextMenuAnchor {
|
|
10
|
+
clientX: number;
|
|
11
|
+
clientY: number;
|
|
12
|
+
}
|
|
13
|
+
/**
|
|
14
|
+
* The popup menu every display raises from a click point: right-click menus,
|
|
15
|
+
* and the dotplot's drag-release menu.
|
|
16
|
+
*
|
|
17
|
+
* Its own observer, and the one place `menuItems` is resolved: a display passes
|
|
18
|
+
* the getter rather than a built array, so rebuilding the items re-renders this
|
|
19
|
+
* component alone. Built inline in a display body instead, the per-mousemove
|
|
20
|
+
* coordinate state there re-ran the whole menu build — with fresh item
|
|
21
|
+
* identities — on every move while a menu was open.
|
|
22
|
+
*
|
|
23
|
+
* Its events do not stop at the portal — React bubbles them through the
|
|
24
|
+
* component tree to whatever rendered the menu, which on a display is the
|
|
25
|
+
* element that hit-tests the pointer. `DisplayStatusChromeBase` is where that
|
|
26
|
+
* element refuses the events that did not happen over it, for every portalled
|
|
27
|
+
* overlay rather than for menus alone.
|
|
28
|
+
*
|
|
29
|
+
* Mounts only while open, and only with something to show: MUI keeps a Paper
|
|
30
|
+
* that fades out on close, so an anchored-but-empty menu flashes an empty box
|
|
31
|
+
* at the cursor. `onClose` is the single close path — Menu's
|
|
32
|
+
* `closeAfterItemClick` default already fires it ahead of the clicked item's
|
|
33
|
+
* callback, so an item's `onClick` must not read state that closing clears
|
|
34
|
+
* (capture it when the items are built).
|
|
35
|
+
*
|
|
36
|
+
* Being the single close path is also why the display's tracked pointer is
|
|
37
|
+
* dropped here rather than by each display: this menu is portalled, so the
|
|
38
|
+
* display under it is never sent the `mouseleave` its overlays clear on. See
|
|
39
|
+
* `useClearTrackedPointer`.
|
|
40
|
+
*/
|
|
41
|
+
declare const ContextMenu: ({ anchor, menuItems, onClose, offset, }: {
|
|
42
|
+
anchor: ContextMenuAnchor | undefined;
|
|
43
|
+
menuItems: MenuItemsGetter;
|
|
44
|
+
onClose: () => void;
|
|
45
|
+
offset?: {
|
|
46
|
+
x: number;
|
|
47
|
+
y: number;
|
|
48
|
+
};
|
|
49
|
+
}) => import("react").JSX.Element | null;
|
|
50
|
+
export default ContextMenu;
|
|
@@ -0,0 +1,55 @@
|
|
|
1
|
+
import { jsx as _jsx } from "react/jsx-runtime";
|
|
2
|
+
import { observer } from 'mobx-react';
|
|
3
|
+
import Menu from './CascadingMenu.js';
|
|
4
|
+
import { useClearTrackedPointer } from './useMouseTracking.js';
|
|
5
|
+
import { CONTEXT_MENU_Z_INDEX } from './zIndexes.js';
|
|
6
|
+
/**
|
|
7
|
+
* Nudge off the click point, so the pixel that was right-clicked — a mismatch
|
|
8
|
+
* column, a variant cell — stays visible beside the menu instead of under it.
|
|
9
|
+
*/
|
|
10
|
+
const DEFAULT_OFFSET = { x: 12, y: 0 };
|
|
11
|
+
/**
|
|
12
|
+
* The popup menu every display raises from a click point: right-click menus,
|
|
13
|
+
* and the dotplot's drag-release menu.
|
|
14
|
+
*
|
|
15
|
+
* Its own observer, and the one place `menuItems` is resolved: a display passes
|
|
16
|
+
* the getter rather than a built array, so rebuilding the items re-renders this
|
|
17
|
+
* component alone. Built inline in a display body instead, the per-mousemove
|
|
18
|
+
* coordinate state there re-ran the whole menu build — with fresh item
|
|
19
|
+
* identities — on every move while a menu was open.
|
|
20
|
+
*
|
|
21
|
+
* Its events do not stop at the portal — React bubbles them through the
|
|
22
|
+
* component tree to whatever rendered the menu, which on a display is the
|
|
23
|
+
* element that hit-tests the pointer. `DisplayStatusChromeBase` is where that
|
|
24
|
+
* element refuses the events that did not happen over it, for every portalled
|
|
25
|
+
* overlay rather than for menus alone.
|
|
26
|
+
*
|
|
27
|
+
* Mounts only while open, and only with something to show: MUI keeps a Paper
|
|
28
|
+
* that fades out on close, so an anchored-but-empty menu flashes an empty box
|
|
29
|
+
* at the cursor. `onClose` is the single close path — Menu's
|
|
30
|
+
* `closeAfterItemClick` default already fires it ahead of the clicked item's
|
|
31
|
+
* callback, so an item's `onClick` must not read state that closing clears
|
|
32
|
+
* (capture it when the items are built).
|
|
33
|
+
*
|
|
34
|
+
* Being the single close path is also why the display's tracked pointer is
|
|
35
|
+
* dropped here rather than by each display: this menu is portalled, so the
|
|
36
|
+
* display under it is never sent the `mouseleave` its overlays clear on. See
|
|
37
|
+
* `useClearTrackedPointer`.
|
|
38
|
+
*/
|
|
39
|
+
const ContextMenu = observer(function ContextMenu({ anchor, menuItems, onClose, offset = DEFAULT_OFFSET, }) {
|
|
40
|
+
const clearTrackedPointer = useClearTrackedPointer();
|
|
41
|
+
if (!anchor) {
|
|
42
|
+
return null;
|
|
43
|
+
}
|
|
44
|
+
const items = Array.isArray(menuItems) ? menuItems : menuItems();
|
|
45
|
+
return items.length > 0 ? (_jsx(Menu, { open: true, onMenuItemClick: callback => {
|
|
46
|
+
callback();
|
|
47
|
+
}, onClose: () => {
|
|
48
|
+
clearTrackedPointer();
|
|
49
|
+
onClose();
|
|
50
|
+
}, anchorReference: "anchorPosition", anchorPosition: {
|
|
51
|
+
top: anchor.clientY + offset.y,
|
|
52
|
+
left: anchor.clientX + offset.x,
|
|
53
|
+
}, style: { zIndex: CONTEXT_MENU_Z_INDEX }, menuItems: items })) : null;
|
|
54
|
+
});
|
|
55
|
+
export default ContextMenu;
|
|
@@ -0,0 +1,10 @@
|
|
|
1
|
+
import type { ButtonProps } from '@mui/material';
|
|
2
|
+
/**
|
|
3
|
+
* A Button that copies `value` to the clipboard and briefly swaps its label to
|
|
4
|
+
* `copiedLabel` as feedback. `value` may be a function so callers can defer
|
|
5
|
+
* computing large strings (e.g. JSON.stringify) until the click happens.
|
|
6
|
+
*/
|
|
7
|
+
export default function CopyToClipboardButton({ value, children, copiedLabel, ...rest }: {
|
|
8
|
+
value: string | (() => string);
|
|
9
|
+
copiedLabel?: string;
|
|
10
|
+
} & Omit<ButtonProps, 'value'>): import("react").JSX.Element;
|
|
@@ -0,0 +1,14 @@
|
|
|
1
|
+
import { jsx as _jsx } from "react/jsx-runtime";
|
|
2
|
+
import { Button } from '@mui/material';
|
|
3
|
+
import { useCopyToClipboard } from './useCopyToClipboard.js';
|
|
4
|
+
/**
|
|
5
|
+
* A Button that copies `value` to the clipboard and briefly swaps its label to
|
|
6
|
+
* `copiedLabel` as feedback. `value` may be a function so callers can defer
|
|
7
|
+
* computing large strings (e.g. JSON.stringify) until the click happens.
|
|
8
|
+
*/
|
|
9
|
+
export default function CopyToClipboardButton({ value, children, copiedLabel = 'Copied to clipboard!', ...rest }) {
|
|
10
|
+
const { copied, copy } = useCopyToClipboard();
|
|
11
|
+
return (_jsx(Button, { ...rest, onClick: () => {
|
|
12
|
+
void copy(typeof value === 'function' ? value() : value);
|
|
13
|
+
}, children: copied ? copiedLabel : children }));
|
|
14
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+
}
|
|
@@ -0,0 +1,10 @@
|
|
|
1
|
+
declare const Crosshairs: ({ width, height, mouseX, mouseY, top, zIndex, minLeft, }: {
|
|
2
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+
width: number;
|
|
3
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+
height: number;
|
|
4
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+
mouseX: number;
|
|
5
|
+
mouseY?: number;
|
|
6
|
+
top?: number;
|
|
7
|
+
zIndex?: number;
|
|
8
|
+
minLeft?: number;
|
|
9
|
+
}) => import("react").JSX.Element;
|
|
10
|
+
export default Crosshairs;
|
|
@@ -0,0 +1,15 @@
|
|
|
1
|
+
import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
|
|
2
|
+
const Crosshairs = ({ width, height, mouseX, mouseY, top = 0, zIndex,
|
|
3
|
+
// The vertical (genomic-position) guide is dropped when the cursor is left of
|
|
4
|
+
// this, e.g. over a tree sidebar where it has no meaning and clutters the
|
|
5
|
+
// resize handle. The horizontal row guide is kept.
|
|
6
|
+
minLeft = 0, }) => (_jsxs("svg", { style: {
|
|
7
|
+
position: 'absolute',
|
|
8
|
+
top,
|
|
9
|
+
left: 0,
|
|
10
|
+
width,
|
|
11
|
+
height,
|
|
12
|
+
pointerEvents: 'none',
|
|
13
|
+
zIndex,
|
|
14
|
+
}, children: [mouseY === undefined ? null : (_jsx("line", { x1: 0, x2: width, y1: mouseY, y2: mouseY, stroke: "currentColor" })), mouseX >= minLeft ? (_jsx("line", { x1: mouseX, x2: mouseX, y1: 0, y2: height, stroke: "currentColor" })) : null] }));
|
|
15
|
+
export default Crosshairs;
|
|
@@ -1,16 +1,16 @@
|
|
|
1
1
|
import { jsx as _jsx } from "react/jsx-runtime";
|
|
2
2
|
import { useLayoutEffect, useRef } from 'react';
|
|
3
3
|
import dompurify from 'dompurify';
|
|
4
|
+
import { rewriteExternalAnchors } from './rewriteExternalAnchors.js';
|
|
4
5
|
export default function DOMPurifySanitizedHTML({ value, className, }) {
|
|
5
6
|
const spanRef = useRef(null);
|
|
6
7
|
useLayoutEffect(() => {
|
|
7
8
|
const el = spanRef.current;
|
|
8
9
|
if (el) {
|
|
9
|
-
|
|
10
|
-
a.setAttribute('rel', 'noopener noreferrer');
|
|
11
|
-
a.setAttribute('target', '_blank');
|
|
12
|
-
}
|
|
10
|
+
rewriteExternalAnchors(el);
|
|
13
11
|
}
|
|
14
12
|
}, [value]);
|
|
15
|
-
return (_jsx("span", { ref: spanRef, className: className,
|
|
13
|
+
return (_jsx("span", { ref: spanRef, className: className,
|
|
14
|
+
// eslint-disable-next-line @eslint-react/dom-no-dangerously-set-innerhtml
|
|
15
|
+
dangerouslySetInnerHTML: { __html: dompurify.sanitize(value) } }));
|
|
16
16
|
}
|
|
@@ -1,5 +1,12 @@
|
|
|
1
1
|
import type { CSSProperties } from 'react';
|
|
2
|
-
export default function DataGridFlexContainer({ children, style, }: {
|
|
2
|
+
export default function DataGridFlexContainer({ children, className, style, }: {
|
|
3
3
|
children: React.ReactNode;
|
|
4
|
+
/**
|
|
5
|
+
* merged with the flex-column base. A caller that wants the grid to FILL its
|
|
6
|
+
* parent rather than size to its rows passes `flex: 1; min-height: 0` here —
|
|
7
|
+
* worth doing, because a content-sized DataGrid draws its horizontal
|
|
8
|
+
* scrollbar as an overlay on top of its own last row.
|
|
9
|
+
*/
|
|
10
|
+
className?: string;
|
|
4
11
|
style?: CSSProperties;
|
|
5
|
-
}): import("react
|
|
12
|
+
}): import("react").JSX.Element;
|
|
@@ -1,12 +1,13 @@
|
|
|
1
1
|
import { jsx as _jsx } from "react/jsx-runtime";
|
|
2
|
-
import { makeStyles } from
|
|
2
|
+
import { cx, makeStyles } from '../util/tss-react/index.js';
|
|
3
3
|
const useStyles = makeStyles()({
|
|
4
4
|
flexContainer: {
|
|
5
5
|
display: 'flex',
|
|
6
6
|
flexDirection: 'column',
|
|
7
7
|
},
|
|
8
8
|
});
|
|
9
|
-
|
|
9
|
+
// https://mui.com/x/react-data-grid/layout/#flex-parent-container
|
|
10
|
+
export default function DataGridFlexContainer({ children, className, style, }) {
|
|
10
11
|
const { classes } = useStyles();
|
|
11
|
-
return (_jsx("div", { className: classes.flexContainer, style: style, children: children }));
|
|
12
|
+
return (_jsx("div", { className: cx(classes.flexContainer, className), style: style, children: children }));
|
|
12
13
|
}
|
package/esm/ui/Dialog.d.ts
CHANGED
|
@@ -1,7 +1,10 @@
|
|
|
1
1
|
import type { DialogProps } from '@mui/material';
|
|
2
|
-
export interface Props extends DialogProps {
|
|
2
|
+
export interface Props extends Omit<DialogProps, 'onClose'> {
|
|
3
3
|
header?: React.ReactNode;
|
|
4
4
|
titleNode?: React.ReactNode;
|
|
5
|
+
onClose?: {
|
|
6
|
+
bivarianceHack(event: object, reason: 'backdropClick' | 'escapeKeyDown' | 'closeButtonClick'): void;
|
|
7
|
+
}['bivarianceHack'] | undefined;
|
|
5
8
|
}
|
|
6
|
-
declare
|
|
9
|
+
declare function Dialog(props: Props): import("react").JSX.Element;
|
|
7
10
|
export default Dialog;
|
package/esm/ui/Dialog.js
CHANGED
|
@@ -1,12 +1,11 @@
|
|
|
1
1
|
import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
|
|
2
|
-
import {
|
|
2
|
+
import { useMemo } from 'react';
|
|
3
3
|
import CloseIcon from '@mui/icons-material/Close';
|
|
4
|
-
import {
|
|
5
|
-
import {
|
|
6
|
-
import
|
|
7
|
-
import
|
|
8
|
-
import SanitizedHTML from
|
|
9
|
-
import { makeStyles } from "../util/tss-react/index.js";
|
|
4
|
+
import { DialogTitle, Divider, IconButton, Dialog as MUIDialog, ScopedCssBaseline, ThemeProvider, createTheme, useTheme, } from '@mui/material';
|
|
5
|
+
import { makeStyles } from '../util/tss-react/index.js';
|
|
6
|
+
import ErrorBanner from './ErrorBanner.js';
|
|
7
|
+
import { ErrorBoundary } from './ErrorBoundary.js';
|
|
8
|
+
import SanitizedHTML from './SanitizedHTML.js';
|
|
10
9
|
const useStyles = makeStyles()(theme => ({
|
|
11
10
|
closeButton: {
|
|
12
11
|
position: 'absolute',
|
|
@@ -15,31 +14,40 @@ const useStyles = makeStyles()(theme => ({
|
|
|
15
14
|
color: theme.palette.grey[500],
|
|
16
15
|
},
|
|
17
16
|
errorBox: {
|
|
18
|
-
|
|
19
|
-
margin:
|
|
17
|
+
maxWidth: 800,
|
|
18
|
+
margin: theme.spacing(5),
|
|
20
19
|
},
|
|
21
20
|
}));
|
|
22
21
|
function DialogError({ error }) {
|
|
23
22
|
const { classes } = useStyles();
|
|
24
|
-
return (_jsx("div", { className: classes.errorBox, children: _jsx(
|
|
23
|
+
return (_jsx("div", { className: classes.errorBox, children: _jsx(ErrorBanner, { error: error }) }));
|
|
25
24
|
}
|
|
26
|
-
|
|
25
|
+
function Dialog(props) {
|
|
27
26
|
const { classes } = useStyles();
|
|
28
|
-
const { titleNode, ...rest } = props;
|
|
29
|
-
const {
|
|
27
|
+
const { titleNode, header, title, ...rest } = props;
|
|
28
|
+
const { children, onClose } = rest;
|
|
30
29
|
const theme = useTheme();
|
|
31
|
-
|
|
32
|
-
|
|
33
|
-
|
|
34
|
-
|
|
35
|
-
|
|
36
|
-
|
|
37
|
-
|
|
38
|
-
|
|
39
|
-
|
|
40
|
-
|
|
41
|
-
|
|
42
|
-
|
|
43
|
-
|
|
44
|
-
|
|
30
|
+
// content-box override xref https://github.com/GMOD/jbrowse-components/pull/3666
|
|
31
|
+
const dialogTheme = useMemo(() => createTheme(theme, {
|
|
32
|
+
components: {
|
|
33
|
+
MuiInputBase: {
|
|
34
|
+
styleOverrides: {
|
|
35
|
+
input: {
|
|
36
|
+
boxSizing: 'content-box!important',
|
|
37
|
+
},
|
|
38
|
+
},
|
|
39
|
+
},
|
|
40
|
+
},
|
|
41
|
+
}), [theme]);
|
|
42
|
+
return (_jsx(MUIDialog, { ...rest, children: _jsxs(ScopedCssBaseline, { children: [header ? (header) : (_jsxs(DialogTitle, { children: [titleNode ?? _jsx(SanitizedHTML, { html: title ?? '' }), onClose ? (_jsx(IconButton
|
|
43
|
+
// The one handle on a dialog's (×), for a driver that cannot use
|
|
44
|
+
// Escape: MUI delivers Escape through the modal, so a press
|
|
45
|
+
// while focus sits on the body — where clicking an action button
|
|
46
|
+
// that then disables itself leaves it — closes nothing, and a
|
|
47
|
+
// screenshot spec's later actions all keep succeeding under the
|
|
48
|
+
// panel they were meant to dismiss
|
|
49
|
+
, { "data-testid": "dialog-close", className: classes.closeButton, onClick: event => {
|
|
50
|
+
onClose(event, 'closeButtonClick');
|
|
51
|
+
}, children: _jsx(CloseIcon, {}) })) : null] })), _jsx(Divider, {}), _jsx(ErrorBoundary, { FallbackComponent: DialogError, children: _jsx(ThemeProvider, { theme: dialogTheme, children: children }) })] }) }));
|
|
52
|
+
}
|
|
45
53
|
export default Dialog;
|
|
@@ -1,5 +1,5 @@
|
|
|
1
|
-
import type { DialogProps } from '
|
|
2
|
-
declare const DraggableDialog: (props: DialogProps & {
|
|
1
|
+
import type { Props as DialogProps } from './Dialog.tsx';
|
|
2
|
+
declare const DraggableDialog: (props: Omit<DialogProps, 'slotProps'> & {
|
|
3
3
|
title: string;
|
|
4
|
-
}) => import("react
|
|
4
|
+
}) => import("react").JSX.Element;
|
|
5
5
|
export default DraggableDialog;
|
|
@@ -1,10 +1,10 @@
|
|
|
1
1
|
import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
|
|
2
|
-
import { useRef } from 'react';
|
|
3
|
-
import { makeStyles } from '@jbrowse/core/util/tss-react';
|
|
2
|
+
import { useEffect, useRef, useState } from 'react';
|
|
4
3
|
import CloseIcon from '@mui/icons-material/Close';
|
|
5
|
-
import {
|
|
4
|
+
import { DialogTitle, IconButton } from '@mui/material';
|
|
6
5
|
import { observer } from 'mobx-react';
|
|
7
|
-
import
|
|
6
|
+
import { makeStyles } from '../util/tss-react/index.js';
|
|
7
|
+
import Dialog from './Dialog.js';
|
|
8
8
|
const useStyles = makeStyles()(theme => ({
|
|
9
9
|
closeButton: {
|
|
10
10
|
position: 'absolute',
|
|
@@ -12,16 +12,54 @@ const useStyles = makeStyles()(theme => ({
|
|
|
12
12
|
top: theme.spacing(1),
|
|
13
13
|
color: theme.palette.grey[500],
|
|
14
14
|
},
|
|
15
|
+
title: {
|
|
16
|
+
cursor: 'move',
|
|
17
|
+
},
|
|
15
18
|
}));
|
|
16
|
-
|
|
17
|
-
|
|
18
|
-
|
|
19
|
-
|
|
19
|
+
// A drag-repositionable dialog. Renders the shared Dialog so it inherits the
|
|
20
|
+
// content-box input fix and the error boundary, and supplies a draggable title
|
|
21
|
+
// bar as Dialog's `header`. `slotProps` is not offered: the paper slot carries
|
|
22
|
+
// the drag transform, so a caller's would be dropped rather than merged.
|
|
20
23
|
const DraggableDialog = observer(function DraggableDialog(props) {
|
|
21
24
|
const { classes } = useStyles();
|
|
22
|
-
const { title, children, onClose } = props;
|
|
23
|
-
|
|
24
|
-
|
|
25
|
-
|
|
25
|
+
const { title, children, onClose, ...rest } = props;
|
|
26
|
+
const [pos, setPos] = useState({ x: 0, y: 0 });
|
|
27
|
+
const [dragging, setDragging] = useState(false);
|
|
28
|
+
const originRef = useRef({ mouseX: 0, mouseY: 0, x: 0, y: 0 });
|
|
29
|
+
useEffect(() => {
|
|
30
|
+
if (dragging) {
|
|
31
|
+
function move(event) {
|
|
32
|
+
event.preventDefault();
|
|
33
|
+
const { mouseX, mouseY, x, y } = originRef.current;
|
|
34
|
+
setPos({
|
|
35
|
+
x: x + event.clientX - mouseX,
|
|
36
|
+
y: y + event.clientY - mouseY,
|
|
37
|
+
});
|
|
38
|
+
}
|
|
39
|
+
function up() {
|
|
40
|
+
setDragging(false);
|
|
41
|
+
}
|
|
42
|
+
window.addEventListener('mousemove', move);
|
|
43
|
+
window.addEventListener('mouseup', up);
|
|
44
|
+
return () => {
|
|
45
|
+
window.removeEventListener('mousemove', move);
|
|
46
|
+
window.removeEventListener('mouseup', up);
|
|
47
|
+
};
|
|
48
|
+
}
|
|
49
|
+
return undefined;
|
|
50
|
+
}, [dragging]);
|
|
51
|
+
return (_jsx(Dialog, { ...rest, onClose: onClose, slotProps: {
|
|
52
|
+
paper: { style: { transform: `translate(${pos.x}px, ${pos.y}px)` } },
|
|
53
|
+
}, header: _jsxs(DialogTitle, { className: classes.title, onMouseDown: event => {
|
|
54
|
+
originRef.current = {
|
|
55
|
+
mouseX: event.clientX,
|
|
56
|
+
mouseY: event.clientY,
|
|
57
|
+
x: pos.x,
|
|
58
|
+
y: pos.y,
|
|
59
|
+
};
|
|
60
|
+
setDragging(true);
|
|
61
|
+
}, children: [title, onClose ? (_jsx(IconButton, { className: classes.closeButton, onClick: event => {
|
|
62
|
+
onClose(event, 'closeButtonClick');
|
|
63
|
+
}, children: _jsx(CloseIcon, {}) })) : null] }), children: children }));
|
|
26
64
|
});
|
|
27
65
|
export default DraggableDialog;
|
package/esm/ui/DropDownMenu.d.ts
CHANGED
|
@@ -1,6 +1,8 @@
|
|
|
1
1
|
import type { MenuItem } from './Menu.tsx';
|
|
2
|
-
|
|
2
|
+
import type { MenuItemClickHandler } from './MenuTypes.ts';
|
|
3
|
+
declare const DropDownMenu: ({ menuTitle, menuItems, onMenuItemClick, }: {
|
|
3
4
|
menuTitle: string;
|
|
4
5
|
menuItems: MenuItem[] | (() => MenuItem[]);
|
|
5
|
-
|
|
6
|
+
onMenuItemClick?: (callback: MenuItemClickHandler) => void;
|
|
7
|
+
}) => import("react").JSX.Element;
|
|
6
8
|
export default DropDownMenu;
|
package/esm/ui/DropDownMenu.js
CHANGED
|
@@ -1,9 +1,9 @@
|
|
|
1
1
|
import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
|
|
2
|
-
import { makeStyles } from '@jbrowse/core/util/tss-react';
|
|
3
2
|
import ArrowDropDown from '@mui/icons-material/ArrowDropDown';
|
|
4
3
|
import { Button, alpha } from '@mui/material';
|
|
5
4
|
import { observer } from 'mobx-react';
|
|
6
|
-
import
|
|
5
|
+
import { makeStyles } from '../util/tss-react/index.js';
|
|
6
|
+
import CascadingMenuButton from './CascadingMenuButton.js';
|
|
7
7
|
const useStyles = makeStyles()(theme => ({
|
|
8
8
|
buttonRoot: {
|
|
9
9
|
'&:hover': {
|
|
@@ -18,7 +18,7 @@ function ButtonComponent(props) {
|
|
|
18
18
|
const { classes } = useStyles();
|
|
19
19
|
return (_jsx(Button, { ...props, className: classes.buttonRoot, children: props.children }));
|
|
20
20
|
}
|
|
21
|
-
const DropDownMenu = observer(function DropDownMenu({ menuTitle, menuItems, }) {
|
|
22
|
-
return (_jsxs(CascadingMenuButton, { menuItems: menuItems, color: "inherit", ButtonComponent: ButtonComponent,
|
|
21
|
+
const DropDownMenu = observer(function DropDownMenu({ menuTitle, menuItems, onMenuItemClick, }) {
|
|
22
|
+
return (_jsxs(CascadingMenuButton, { menuItems: menuItems, onMenuItemClick: onMenuItemClick, color: "inherit", ButtonComponent: ButtonComponent, children: [menuTitle, _jsx(ArrowDropDown, {})] }));
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|
23
23
|
});
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|
24
24
|
export default DropDownMenu;
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|
@@ -1,4 +1,5 @@
|
|
|
1
1
|
import type { TypographyProps } from '@mui/material';
|
|
2
|
+
import type { Ref } from 'react';
|
|
2
3
|
type Variant = TypographyProps['variant'];
|
|
3
4
|
type EditableTypographyClassKey = 'input' | 'inputBase' | 'inputRoot' | 'inputFocused';
|
|
4
5
|
interface Props {
|
|
@@ -6,6 +7,7 @@ interface Props {
|
|
|
6
7
|
setValue: (value: string) => void;
|
|
7
8
|
variant: Variant;
|
|
8
9
|
classes?: Partial<Record<EditableTypographyClassKey, string>>;
|
|
10
|
+
ref?: Ref<HTMLDivElement>;
|
|
9
11
|
}
|
|
10
|
-
declare
|
|
12
|
+
declare function EditableTypography(props: Props): import("react").JSX.Element;
|
|
11
13
|
export default EditableTypography;
|