@jbrowse/core 4.3.0 → 5.0.0-beta.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +822 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +13 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +33 -22
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +8 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +117 -19
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -8
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +12 -5
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +28 -17
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -40
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +6 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +46 -30
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +20 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +66 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +17 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +3 -9
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +3 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +7 -14
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +2 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +19 -13
- package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +5 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +8 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +32 -10
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +18 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +7 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +62 -24
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +10 -5
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +64 -41
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +17 -8
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +19 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +5 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +15 -18
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +33 -17
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +3 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +7 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +11 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +29 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -6
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +18 -6
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +11 -29
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +9 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +63 -58
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +7 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +38 -51
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +19 -27
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +18 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +12 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +97 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +50 -63
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +62 -59
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.d.ts +21 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.js +24 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +5 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +93 -75
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +4 -11
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +5 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +21 -48
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.js +20 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +6 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +33 -13
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +7 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +67 -11
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.d.ts +14 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.js +42 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +7 -7
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +9 -9
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +28 -44
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.d.ts +23 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.js +31 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +90 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +145 -23
- package/esm/BaseFeatureWidget/configSchema.js +1 -1
- package/esm/BaseFeatureWidget/formatDetails.d.ts +38 -0
- package/esm/BaseFeatureWidget/formatDetails.js +103 -0
- package/esm/BaseFeatureWidget/index.d.ts +3 -1
- package/esm/BaseFeatureWidget/index.js +2 -2
- package/esm/BaseFeatureWidget/stateModelFactory.d.ts +80 -62
- package/esm/BaseFeatureWidget/stateModelFactory.js +128 -29
- package/esm/BaseFeatureWidget/types.d.ts +4 -3
- package/esm/BaseFeatureWidget/util.d.ts +4 -29
- package/esm/BaseFeatureWidget/util.js +20 -84
- package/esm/CorePlugin.js +11 -6
- package/esm/PhasedScheduler.d.ts +4 -2
- package/esm/PhasedScheduler.js +18 -2
- package/esm/Plugin.d.ts +6 -1
- package/esm/Plugin.js +7 -0
- package/esm/PluginLoader.d.ts +41 -40
- package/esm/PluginLoader.js +206 -78
- package/esm/PluginManager.d.ts +421 -55
- package/esm/PluginManager.js +461 -89
- package/esm/ReExports/BaseFeatureDetails.js +7 -6
- package/esm/ReExports/MuiDataGridReExports.d.ts +2 -2
- package/esm/ReExports/MuiDataGridReExports.js +58 -130
- package/esm/ReExports/MuiReExports.d.ts +3 -134
- package/esm/ReExports/MuiReExports.js +43 -16
- package/esm/ReExports/MuiStylesReExports.d.ts +66 -0
- package/esm/ReExports/MuiStylesReExports.js +55 -0
- package/esm/ReExports/index.js +1 -1
- package/esm/ReExports/lazify.d.ts +2 -2
- package/esm/ReExports/lazify.js +16 -3
- package/esm/ReExports/list.js +54 -229
- package/esm/ReExports/modules.js +62 -93
- package/esm/ReExports/muiComponentNames.d.ts +18 -0
- package/esm/ReExports/muiComponentNames.js +130 -0
- package/esm/ReExports/publicUtil.d.ts +1 -0
- package/esm/ReExports/publicUtil.js +28 -0
- package/esm/ReExports/registry.d.ts +2 -0
- package/esm/ReExports/registry.js +28 -0
- package/esm/ReExports/sharedModules.d.ts +96 -0
- package/esm/ReExports/sharedModules.js +59 -0
- package/esm/ReExports/uiStub.d.ts +1 -0
- package/esm/ReExports/uiStub.js +13 -0
- package/esm/ReExports/workerModules.d.ts +2 -0
- package/esm/ReExports/workerModules.js +10 -0
- package/esm/TextSearch/BaseResults.d.ts +20 -21
- package/esm/TextSearch/BaseResults.js +8 -33
- package/esm/TextSearch/TextSearchManager.d.ts +14 -34
- package/esm/TextSearch/TextSearchManager.js +87 -34
- package/esm/assemblyManager/assembly.d.ts +307 -34
- package/esm/assemblyManager/assembly.js +551 -262
- package/esm/assemblyManager/assemblyAdapters.d.ts +12 -0
- package/esm/assemblyManager/assemblyAdapters.js +18 -0
- package/esm/assemblyManager/assemblyConfigSchema.d.ts +192 -17
- package/esm/assemblyManager/assemblyConfigSchema.js +213 -19
- package/esm/assemblyManager/assemblyManager.d.ts +711 -303
- package/esm/assemblyManager/assemblyManager.js +351 -46
- package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +32 -0
- package/esm/assemblyManager/expandAssemblyConfigShorthand.js +85 -0
- package/esm/assemblyManager/geneticCodes.d.ts +21 -0
- package/esm/assemblyManager/geneticCodes.js +47 -0
- package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +9 -0
- package/esm/assemblyManager/getSequenceAdapterConfig.js +12 -0
- package/esm/assemblyManager/index.d.ts +1 -1
- package/esm/assemblyManager/index.js +2 -2
- package/esm/assemblyManager/loadRefNameMap.d.ts +5 -0
- package/esm/assemblyManager/loadRefNameMap.js +80 -0
- package/esm/assemblyManager/refNameColors.d.ts +1 -0
- package/esm/assemblyManager/refNameColors.js +32 -0
- package/esm/assemblyManager/refNameMaps.d.ts +26 -0
- package/esm/assemblyManager/refNameMaps.js +87 -0
- package/esm/assemblyManager/refNameMismatch.d.ts +54 -0
- package/esm/assemblyManager/refNameMismatch.js +66 -0
- package/esm/checkPlugins.d.ts +11 -0
- package/esm/checkPlugins.js +77 -0
- package/esm/configuration/configurationSchema.d.ts +122 -20
- package/esm/configuration/configurationSchema.js +374 -140
- package/esm/configuration/configurationSlot.d.ts +283 -30
- package/esm/configuration/configurationSlot.js +205 -226
- package/esm/configuration/formatAboutConfigSchema.d.ts +55 -0
- package/esm/configuration/formatAboutConfigSchema.js +58 -0
- package/esm/configuration/formatDetailsConfigSchema.d.ts +80 -0
- package/esm/configuration/formatDetailsConfigSchema.js +90 -0
- package/esm/configuration/fullConfSnapshot.d.ts +28 -0
- package/esm/configuration/fullConfSnapshot.js +66 -0
- package/esm/configuration/getConf.d.ts +88 -0
- package/esm/configuration/getConf.js +74 -0
- package/esm/configuration/index.d.ts +19 -3
- package/esm/configuration/index.js +19 -2
- package/esm/configuration/mergeFormatCallbacks.d.ts +15 -0
- package/esm/configuration/mergeFormatCallbacks.js +24 -0
- package/esm/configuration/promotableDefaults.d.ts +199 -0
- package/esm/configuration/promotableDefaults.js +332 -0
- package/esm/configuration/promotablePin.d.ts +55 -0
- package/esm/configuration/promotableResolve.d.ts +108 -0
- package/esm/configuration/promotableResolve.js +117 -0
- package/esm/configuration/promotableSlots.d.ts +12 -0
- package/esm/configuration/promotableSlots.js +45 -0
- package/esm/configuration/readConfObject.d.ts +56 -0
- package/esm/configuration/readConfObject.js +161 -0
- package/esm/configuration/schemaRegistry.d.ts +35 -0
- package/esm/configuration/schemaRegistry.js +50 -0
- package/esm/configuration/schemaTypes.d.ts +23 -0
- package/esm/configuration/schemaTypes.js +94 -0
- package/esm/configuration/slotFacade.d.ts +82 -0
- package/esm/configuration/slotFacade.js +89 -0
- package/esm/configuration/slotShape.d.ts +12 -0
- package/esm/configuration/slotShape.js +84 -0
- package/esm/configuration/slotValueUtils.d.ts +17 -0
- package/esm/configuration/slotValueUtils.js +25 -0
- package/esm/configuration/tabixIndexFields.d.ts +44 -0
- package/esm/configuration/tabixIndexFields.js +45 -0
- package/esm/configuration/tabixShorthand.d.ts +34 -0
- package/esm/configuration/tabixShorthand.js +45 -0
- package/esm/configuration/types.d.ts +170 -7
- package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +24 -10
- package/esm/data_adapters/BaseAdapter/BaseAdapter.js +23 -15
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +132 -7
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +136 -25
- package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +1 -0
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +13 -5
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +9 -7
- package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +2 -1
- package/esm/data_adapters/BaseAdapter/CytobandAdapter.d.ts +7 -0
- package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +2 -1
- package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +29 -0
- package/esm/data_adapters/BaseAdapter/featureDensity.js +17 -0
- package/esm/data_adapters/BaseAdapter/getAdapterId.d.ts +2 -0
- package/esm/data_adapters/BaseAdapter/getAdapterId.js +9 -0
- package/esm/data_adapters/BaseAdapter/index.d.ts +7 -4
- package/esm/data_adapters/BaseAdapter/index.js +6 -5
- package/esm/data_adapters/BaseAdapter/stats.d.ts +37 -5
- package/esm/data_adapters/BaseAdapter/stats.js +89 -24
- package/esm/data_adapters/BaseAdapter/types.d.ts +11 -8
- package/esm/data_adapters/BaseAdapter/types.js +1 -0
- package/esm/data_adapters/BaseAdapter/util.d.ts +5 -1
- package/esm/data_adapters/BaseAdapter/util.js +14 -3
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +1 -1
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +4 -4
- package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +36 -4
- package/esm/data_adapters/CytobandAdapter/configSchema.js +46 -2
- package/esm/data_adapters/CytobandAdapter/index.js +3 -3
- package/esm/data_adapters/adapterSessionRefcount.d.ts +61 -0
- package/esm/data_adapters/adapterSessionRefcount.js +96 -0
- package/esm/data_adapters/dataAdapterCache.d.ts +35 -1
- package/esm/data_adapters/dataAdapterCache.js +62 -22
- package/esm/data_adapters/getFeatureAdapter.d.ts +22 -0
- package/esm/data_adapters/getFeatureAdapter.js +27 -0
- package/esm/data_adapters/getSequenceSubAdapter.d.ts +21 -0
- package/esm/data_adapters/getSequenceSubAdapter.js +44 -0
- package/esm/pluggableElementTypes/AdapterType.d.ts +52 -2
- package/esm/pluggableElementTypes/AdapterType.js +44 -5
- package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +6 -1
- package/esm/pluggableElementTypes/AddTrackWorkflowType.js +3 -1
- package/esm/pluggableElementTypes/ConnectionType.d.ts +5 -5
- package/esm/pluggableElementTypes/ConnectionType.js +1 -1
- package/esm/pluggableElementTypes/DisplayType.d.ts +19 -10
- package/esm/pluggableElementTypes/DisplayType.js +53 -5
- package/esm/pluggableElementTypes/InternetAccountType.js +1 -1
- package/esm/pluggableElementTypes/PluggableElementBase.d.ts +13 -0
- package/esm/pluggableElementTypes/PluggableElementBase.js +13 -0
- package/esm/pluggableElementTypes/RpcMethodType.d.ts +132 -12
- package/esm/pluggableElementTypes/RpcMethodType.js +263 -98
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +19 -9
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +26 -20
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.d.ts +5 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.js +18 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.d.ts +5 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.js +10 -0
- package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +3 -3
- package/esm/pluggableElementTypes/TextSearchAdapterType.js +3 -1
- package/esm/pluggableElementTypes/TrackType.d.ts +2 -1
- package/esm/pluggableElementTypes/TrackType.js +1 -1
- package/esm/pluggableElementTypes/ViewType.d.ts +27 -3
- package/esm/pluggableElementTypes/ViewType.js +84 -4
- package/esm/pluggableElementTypes/WidgetType.d.ts +2 -2
- package/esm/pluggableElementTypes/WidgetType.js +1 -1
- package/esm/pluggableElementTypes/addMenuItems.d.ts +87 -0
- package/esm/pluggableElementTypes/addMenuItems.js +82 -0
- package/esm/pluggableElementTypes/extendElementType.d.ts +30 -0
- package/esm/pluggableElementTypes/extendElementType.js +73 -0
- package/esm/pluggableElementTypes/index.d.ts +7 -7
- package/esm/pluggableElementTypes/index.js +24 -14
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +70 -15
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +90 -10
- package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +646 -84
- package/esm/pluggableElementTypes/models/BaseDisplayModel.js +241 -60
- package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +216 -35
- package/esm/pluggableElementTypes/models/BaseTrackModel.js +365 -83
- package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +216 -16
- package/esm/pluggableElementTypes/models/BaseViewModel.js +150 -16
- package/esm/pluggableElementTypes/models/HighlightsMixin.d.ts +51 -0
- package/esm/pluggableElementTypes/models/HighlightsMixin.js +78 -0
- package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +163 -29
- package/esm/pluggableElementTypes/models/InternetAccountModel.js +218 -48
- package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +177 -0
- package/esm/pluggableElementTypes/models/assertDisplayContract.js +239 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +22 -8
- package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -2
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +39 -20
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +23 -2
- package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +181 -65
- package/esm/pluggableElementTypes/models/baseTrackConfig.js +191 -89
- package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +3 -8
- package/esm/pluggableElementTypes/models/components/SaveTrackData.js +113 -139
- package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +55 -0
- package/esm/pluggableElementTypes/models/components/fetchTrackData.js +83 -0
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +40 -0
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +115 -0
- package/esm/pluggableElementTypes/models/index.d.ts +6 -3
- package/esm/pluggableElementTypes/models/index.js +10 -8
- package/esm/pluggableElementTypes/models/migrateTrackConfig.d.ts +34 -0
- package/esm/pluggableElementTypes/models/migrateTrackConfig.js +54 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +75 -7
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +9 -3
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +153 -103
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +6 -1
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +70 -74
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +9 -1
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.d.ts +21 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.js +51 -0
- package/esm/pluggableElementTypes/models/uriMatchesDomains.d.ts +29 -0
- package/esm/pluggableElementTypes/models/uriMatchesDomains.js +62 -0
- package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.d.ts +5 -4
- package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.js +20 -10
- package/esm/pluginDefinitions.d.ts +198 -0
- package/esm/pluginDefinitions.js +220 -0
- package/esm/rpc/BaseRpcDriver.d.ts +27 -35
- package/esm/rpc/BaseRpcDriver.js +74 -107
- package/esm/rpc/MainThreadRpcDriver.d.ts +9 -10
- package/esm/rpc/MainThreadRpcDriver.js +18 -29
- package/esm/rpc/RpcClient.d.ts +38 -0
- package/esm/rpc/RpcClient.js +154 -0
- package/esm/rpc/RpcManager.d.ts +116 -27
- package/esm/rpc/RpcManager.js +177 -50
- package/esm/rpc/RpcRegistry.d.ts +275 -0
- package/esm/rpc/RpcRegistry.js +1 -0
- package/esm/rpc/RpcServer.d.ts +41 -0
- package/esm/rpc/RpcServer.js +235 -0
- package/esm/rpc/WebWorkerRpcDriver.d.ts +71 -24
- package/esm/rpc/WebWorkerRpcDriver.js +312 -27
- package/esm/rpc/byteBudget.d.ts +58 -0
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- package/esm/util/nextTick.d.ts +0 -1
- package/esm/util/nextTick.js +0 -3
- package/esm/util/offscreenCanvasGetSerializingSvg.d.ts +0 -5
- package/esm/util/offscreenCanvasGetSerializingSvg.js +0 -9
- package/esm/util/offscreenCanvasUtils.d.ts +0 -12
- package/esm/util/offscreenCanvasUtils.js +0 -19
- package/esm/util/renderToAbstractCanvas.d.ts +0 -17
- package/esm/util/renderToAbstractCanvas.js +0 -53
- package/esm/util/transferables.d.ts +0 -2
- package/esm/util/transferables.js +0 -35
- package/esm/util/tss-react/mui/index.d.ts +0 -1
- package/esm/util/tss-react/mui/index.js +0 -1
- package/esm/util/tss-react/mui/mui.d.ts +0 -10
- package/esm/util/tss-react/mui/mui.js +0 -5
- package/esm/util/when.d.ts +0 -1
- package/esm/util/when.js +0 -1
- /package/esm/{data_adapters/BaseAdapter/BaseOptions.js → configuration/promotablePin.js} +0 -0
- /package/esm/{util/layouts/BaseLayout.js → data_adapters/BaseAdapter/CytobandAdapter.js} +0 -0
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import RendererType from './RendererType.tsx';
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import SerializableFilterChain from './util/serializableFilterChain.ts';
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import type { RenderProps, RenderResults } from './RendererType.tsx';
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import type { SerializedFilterChain } from './util/serializableFilterChain.ts';
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import type { AnyConfigurationModel } from '../../configuration/index.ts';
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import type RpcManager from '../../rpc/RpcManager.ts';
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import type { LastStopTokenCheck } from '../../util/stopToken.ts';
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import type { SnapshotIn, SnapshotOrInstance } from '@jbrowse/mobx-state-tree';
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import type { ThemeOptions } from '@mui/material';
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interface BaseRenderArgs extends RenderProps {
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sessionId: string;
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trackInstanceId: string;
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stopToken?: string;
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theme: ThemeOptions;
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exportSVG?: {
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rasterizeLayers?: boolean;
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};
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}
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export interface RenderArgs extends BaseRenderArgs {
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config: SnapshotOrInstance<AnyConfigurationModel>;
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filters?: SerializableFilterChain;
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renderingProps?: Record<string, unknown>;
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}
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export interface RenderArgsSerialized extends BaseRenderArgs {
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statusCallback?: (arg: string) => void;
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config: SnapshotIn<AnyConfigurationModel>;
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filters?: SerializedFilterChain;
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}
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export interface RenderArgsDeserialized extends BaseRenderArgs {
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config: AnyConfigurationModel;
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filters?: SerializableFilterChain;
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stopTokenCheck?: LastStopTokenCheck;
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}
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export type ResultsSerialized = Omit<RenderResults, 'reactElement'> & {
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imageData?: ImageBitmap;
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};
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export interface ResultsSerializedSvgExport extends ResultsSerialized {
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canvasRecordedData: unknown;
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width: number;
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height: number;
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reactElement: unknown;
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}
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export type ResultsDeserialized = RenderResults;
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export default class ServerSideRenderer extends RendererType {
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private createReactElement;
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renderDirect(args: RenderArgs): Promise<RenderResults | {
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reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
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html?: string;
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}>;
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serializeArgsInClient(args: RenderArgs): RenderArgsSerialized;
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deserializeResultsInClient(res: ResultsSerialized, args: RenderArgs): ResultsDeserialized;
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deserializeArgsInWorker(args: RenderArgsSerialized): RenderArgsDeserialized;
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serializeResultsInWorker(results: RenderResults, _args: RenderArgsDeserialized): ResultsSerialized;
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renderInClient(rpcManager: RpcManager, args: RenderArgs): Promise<ResultsSerialized>;
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renderInWorker(args: RenderArgsSerialized): Promise<ResultsSerialized>;
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freeResourcesInClient(rpcManager: RpcManager, args: RenderArgs): Promise<void>;
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}
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export { type RenderResults, type RenderReturn } from './RendererType.tsx';
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import { createElement } from 'react';
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import { getSnapshot, isStateTreeNode } from '@jbrowse/mobx-state-tree';
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import RendererType from "./RendererType.js";
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import SerializableFilterChain from "./util/serializableFilterChain.js";
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import { getSerializedSvg, updateStatus } from "../../util/index.js";
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import { isRpcResult } from "../../util/rpc.js";
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import { checkStopToken2, createStopTokenChecker, } from "../../util/stopToken.js";
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function isCanvasRecordedSvgExport(e) {
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return 'canvasRecordedData' in e;
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}
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export default class ServerSideRenderer extends RendererType {
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createReactElement(res, args) {
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if (args.exportSVG) {
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if (res.html) {
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return undefined;
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}
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if (this.supportsSVG) {
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return createElement(this.ReactComponent, { ...args, ...res });
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}
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return createElement('text', { y: '12', fill: 'black' }, 'SVG export not supported for this track');
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}
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return createElement(this.ReactComponent, {
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...args,
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...res,
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...args.renderingProps,
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});
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}
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async renderDirect(args) {
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const { renderingProps, ...rest } = args;
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const config = isStateTreeNode(args.config)
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? args.config
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: this.configSchema.create(args.config || {}, {
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pluginManager: this.pluginManager,
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});
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const results = await this.render({
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...rest,
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config,
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});
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if (isRpcResult(results)) {
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return this.deserializeResultsInClient(results.value, args);
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}
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const { reactElement, ...resultRest } = results;
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return {
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...resultRest,
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reactElement: this.createReactElement(resultRest, args),
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};
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}
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serializeArgsInClient(args) {
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const { renderingProps, ...rest } = args;
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return {
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...rest,
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config: isStateTreeNode(args.config)
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? getSnapshot(args.config)
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: args.config,
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filters: args.filters?.toJSON().filters,
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};
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}
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deserializeResultsInClient(res, args) {
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return {
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...res,
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reactElement: this.createReactElement(res, args),
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};
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}
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deserializeArgsInWorker(args) {
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return {
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...args,
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config: this.configSchema.create(args.config || {}, {
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pluginManager: this.pluginManager,
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}),
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filters: args.filters
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? new SerializableFilterChain({
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filters: args.filters,
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jexl: this.pluginManager.jexl,
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})
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: undefined,
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};
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}
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serializeResultsInWorker(results, _args) {
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const { reactElement, ...rest } = results;
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return rest;
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}
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async renderInClient(rpcManager, args) {
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const results = (await rpcManager.call(args.sessionId, 'CoreRender', args));
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if (isCanvasRecordedSvgExport(results)) {
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const { reactElement, ...rest } = results;
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return { ...rest, html: await getSerializedSvg(results) };
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}
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return results;
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}
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async renderInWorker(args) {
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const { stopToken, statusCallback = () => { } } = args;
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const stopTokenCheck = createStopTokenChecker(stopToken);
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const deserializedArgs = {
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...this.deserializeArgsInWorker(args),
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stopTokenCheck,
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};
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const results = await updateStatus('Rendering plot', statusCallback, () => this.render(deserializedArgs));
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checkStopToken2(stopTokenCheck);
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if (isRpcResult(results)) {
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return results;
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}
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return updateStatus('Serializing results', statusCallback, () => this.serializeResultsInWorker(results, deserializedArgs));
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}
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async freeResourcesInClient(rpcManager, args) {
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await rpcManager.call(args.sessionId, 'CoreFreeResources', this.serializeArgsInClient(args));
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}
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}
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export {} from "./RendererType.js";
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export { default as BoxRendererType } from './BoxRendererType.ts';
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export { default as CircularChordRendererType } from './CircularChordRendererType.tsx';
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export { default as RendererType } from './RendererType.tsx';
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export { default as FeatureRendererType } from './FeatureRendererType.ts';
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export { default as ServerSideRendererType } from './ServerSideRendererType.ts';
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export { type RenderProps } from './RendererType.tsx';
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@@ -1,6 +0,0 @@
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export { default as BoxRendererType } from "./BoxRendererType.js";
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export { default as CircularChordRendererType } from "./CircularChordRendererType.js";
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export { default as RendererType } from "./RendererType.js";
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export { default as FeatureRendererType } from "./FeatureRendererType.js";
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export { default as ServerSideRendererType } from "./ServerSideRendererType.js";
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export {} from "./RendererType.js";
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@@ -1,14 +0,0 @@
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export function normalizeRegion(region) {
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return {
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...region,
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start: Math.floor(region.start),
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end: Math.ceil(region.end),
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};
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}
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export function expandRegion(region, bpExpansion) {
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return {
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...region,
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start: Math.floor(Math.max(region.start - bpExpansion, 0)),
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end: Math.ceil(region.end + bpExpansion),
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};
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}
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@@ -1,8 +0,0 @@
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declare const BaseRpcDriverConfigSchema: import("../configuration/configurationSchema.ts").ConfigurationSchemaType<{
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workerCount: {
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type: string;
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description: string;
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defaultValue: number;
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};
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}, import("../configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
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export default BaseRpcDriverConfigSchema;
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package/esm/rpc/baseRpcConfig.js
DELETED
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@@ -1,10 +0,0 @@
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import { ConfigurationSchema } from "../configuration/index.js";
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function x() { }
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const BaseRpcDriverConfigSchema = ConfigurationSchema('BaseRpcDriver', {
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workerCount: {
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type: 'number',
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description: 'The number of workers to use. If 0 (the default) JBrowse will decide how many workers to use.',
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defaultValue: 0,
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},
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}, { explicitlyTyped: true });
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export default BaseRpcDriverConfigSchema;
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@@ -1,8 +0,0 @@
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declare const MainThreadRpcDriverConfigSchema: import("../configuration/configurationSchema.ts").ConfigurationSchemaType<{}, import("../configuration/configurationSchema.ts").ConfigurationSchemaOptions<import("../configuration/configurationSchema.ts").ConfigurationSchemaType<{
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workerCount: {
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type: string;
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description: string;
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defaultValue: number;
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};
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}, import("../configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
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export default MainThreadRpcDriverConfigSchema;
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@@ -1,8 +0,0 @@
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import BaseRpcDriverConfigSchema from "./baseRpcConfig.js";
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import { ConfigurationSchema } from "../configuration/index.js";
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function x() { }
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const MainThreadRpcDriverConfigSchema = ConfigurationSchema('MainThreadRpcDriver', {}, {
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baseConfiguration: BaseRpcDriverConfigSchema,
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explicitlyTyped: true,
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});
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export default MainThreadRpcDriverConfigSchema;
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@@ -1,17 +0,0 @@
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import RpcMethodType from '../../pluggableElementTypes/RpcMethodType.ts';
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import type { RenderArgs } from './util.ts';
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import type { Region } from '../../util/index.ts';
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export default class CoreGetFeatureDensityStats extends RpcMethodType {
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name: string;
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serializeArguments(args: RenderArgs & {
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stopToken?: string;
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statusCallback?: (arg: string) => void;
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}, rpcDriver: string): Promise<Record<string, unknown>>;
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execute(args: {
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adapterConfig: Record<string, unknown>;
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regions: Region[];
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stopToken?: string;
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headers?: Record<string, string>;
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sessionId: string;
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}, rpcDriver: string): Promise<import("../../data_adapters/BaseAdapter/types.ts").FeatureDensityStats>;
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}
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@@ -1,25 +0,0 @@
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1
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import { isFeatureAdapter } from "../../data_adapters/BaseAdapter/index.js";
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import { getAdapter } from "../../data_adapters/dataAdapterCache.js";
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import RpcMethodType from "../../pluggableElementTypes/RpcMethodType.js";
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import { renameRegionsIfNeeded } from "../../util/index.js";
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5
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export default class CoreGetFeatureDensityStats extends RpcMethodType {
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name = 'CoreGetFeatureDensityStats';
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async serializeArguments(args, rpcDriver) {
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const { rootModel } = this.pluginManager;
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const assemblyManager = rootModel.session.assemblyManager;
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const renamedArgs = await renameRegionsIfNeeded(assemblyManager, {
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...args,
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filters: args.filters?.toJSON().filters,
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});
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return super.serializeArguments(renamedArgs, rpcDriver);
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|
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-
}
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async execute(args, rpcDriver) {
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|
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const deserializedArgs = await this.deserializeArguments(args, rpcDriver);
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18
|
-
const { adapterConfig, sessionId, regions } = deserializedArgs;
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|
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const { dataAdapter } = await getAdapter(this.pluginManager, sessionId, adapterConfig);
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|
20
|
-
if (!isFeatureAdapter(dataAdapter)) {
|
|
21
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throw new Error('Adapter does not support retrieving features');
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|
22
|
-
}
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23
|
-
return dataAdapter.getMultiRegionFeatureDensityStats(regions, deserializedArgs);
|
|
24
|
-
}
|
|
25
|
-
}
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|
@@ -1,11 +0,0 @@
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1
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-
import RpcMethodType from '../../pluggableElementTypes/RpcMethodType.ts';
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2
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-
import type { RenderArgs, RenderArgsSerialized } from './util.ts';
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|
3
|
-
export default class CoreGetFeatureDetails extends RpcMethodType {
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4
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name: string;
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5
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serializeArguments(args: RenderArgs, rpcDriver: string): Promise<any>;
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6
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execute(args: RenderArgsSerialized & {
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7
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-
stopToken?: string;
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}, rpcDriver: string): Promise<{
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|
9
|
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feature: any;
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10
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-
}>;
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|
11
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}
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|
@@ -1,24 +0,0 @@
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1
|
-
import RpcMethodType from "../../pluggableElementTypes/RpcMethodType.js";
|
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2
|
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import { renameRegionsIfNeeded } from "../../util/index.js";
|
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|
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export default class CoreGetFeatureDetails extends RpcMethodType {
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name = 'CoreGetFeatureDetails';
|
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|
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async serializeArguments(args, rpcDriver) {
|
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const { rootModel } = this.pluginManager;
|
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const assemblyManager = rootModel.session.assemblyManager;
|
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const renamedArgs = await renameRegionsIfNeeded(assemblyManager, args);
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const superArgs = (await super.serializeArguments(renamedArgs, rpcDriver));
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const { rendererType } = args;
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const RendererType = this.pluginManager.getRendererType(rendererType);
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return RendererType.serializeArgsInClient(superArgs);
|
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}
|
|
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async execute(args, rpcDriver) {
|
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const deserializedArgs = await this.deserializeArguments(args, rpcDriver);
|
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const { rendererType, featureId } = deserializedArgs;
|
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const RendererType = this.pluginManager.getRendererType(rendererType);
|
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return {
|
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feature: RendererType.getLayoutSession(args)
|
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-
?.cachedLayout.layout.getDataByID(featureId)
|
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?.toJSON(),
|
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};
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}
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|
-
}
|
|
@@ -1,9 +0,0 @@
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import RpcMethodType from '../../pluggableElementTypes/RpcMethodType.ts';
|
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export default class CoreGetFileInfo extends RpcMethodType {
|
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name: string;
|
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execute(args: {
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sessionId: string;
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stopToken?: string;
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adapterConfig: Record<string, unknown>;
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}, rpcDriver: string): Promise<unknown>;
|
|
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|
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}
|
|
@@ -1,15 +0,0 @@
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|
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import { isFeatureAdapter } from "../../data_adapters/BaseAdapter/index.js";
|
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|
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import { getAdapter } from "../../data_adapters/dataAdapterCache.js";
|
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import RpcMethodType from "../../pluggableElementTypes/RpcMethodType.js";
|
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|
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export default class CoreGetFileInfo extends RpcMethodType {
|
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|
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name = 'CoreGetInfo';
|
|
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|
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async execute(args, rpcDriver) {
|
|
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|
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const pm = this.pluginManager;
|
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|
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const deserializedArgs = await this.deserializeArguments(args, rpcDriver);
|
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|
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const { sessionId, adapterConfig } = deserializedArgs;
|
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|
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const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
|
|
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|
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return isFeatureAdapter(dataAdapter)
|
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|
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? dataAdapter.getHeader(deserializedArgs)
|
|
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|
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: null;
|
|
14
|
-
}
|
|
15
|
-
}
|
|
@@ -1,14 +0,0 @@
|
|
|
1
|
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import RpcMethodType from '../../pluggableElementTypes/RpcMethodType.ts';
|
|
2
|
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import type { RenderArgs, RenderArgsSerialized, RenderResults, ResultsSerialized } from './util.ts';
|
|
3
|
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export default class CoreRender extends RpcMethodType {
|
|
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|
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name: string;
|
|
5
|
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serializeArguments(args: RenderArgs, rpcDriver: string): Promise<import("../../pluggableElementTypes/renderers/ServerSideRendererType.ts").RenderArgsSerialized>;
|
|
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|
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executeDirect(args: RenderArgs): Promise<RenderResults | {
|
|
7
|
-
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
|
|
8
|
-
html?: string;
|
|
9
|
-
}>;
|
|
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|
-
execute(args: RenderArgsSerialized & {
|
|
11
|
-
stopToken?: string;
|
|
12
|
-
}, rpcDriver: string): Promise<ResultsSerialized>;
|
|
13
|
-
deserializeReturn(serializedReturn: RenderResults | ResultsSerialized, args: RenderArgs, rpcDriver: string): Promise<unknown>;
|
|
14
|
-
}
|
|
@@ -1,40 +0,0 @@
|
|
|
1
|
-
import { validateRendererType } from "./util.js";
|
|
2
|
-
import RpcMethodType, { convertFileHandleLocations, } from "../../pluggableElementTypes/RpcMethodType.js";
|
|
3
|
-
import { renameRegionsIfNeeded } from "../../util/index.js";
|
|
4
|
-
import { getBlobMap, setBlobMap } from "../../util/tracks.js";
|
|
5
|
-
export default class CoreRender extends RpcMethodType {
|
|
6
|
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name = 'CoreRender';
|
|
7
|
-
async serializeArguments(args, rpcDriver) {
|
|
8
|
-
const { rootModel } = this.pluginManager;
|
|
9
|
-
const assemblyManager = rootModel.session.assemblyManager;
|
|
10
|
-
const renamedArgs = await renameRegionsIfNeeded(assemblyManager, args);
|
|
11
|
-
const superArgs = (await super.serializeArguments(renamedArgs, rpcDriver));
|
|
12
|
-
return validateRendererType(args.rendererType, this.pluginManager.getRendererType(args.rendererType)).serializeArgsInClient(superArgs);
|
|
13
|
-
}
|
|
14
|
-
async executeDirect(args) {
|
|
15
|
-
const { rootModel } = this.pluginManager;
|
|
16
|
-
const assemblyManager = rootModel.session.assemblyManager;
|
|
17
|
-
const renamedArgs = await renameRegionsIfNeeded(assemblyManager, args);
|
|
18
|
-
const { sessionId, rendererType } = renamedArgs;
|
|
19
|
-
if (!sessionId) {
|
|
20
|
-
throw new Error('must pass a unique session id');
|
|
21
|
-
}
|
|
22
|
-
const { renderingProps, ...rest } = renamedArgs;
|
|
23
|
-
const blobMap = getBlobMap();
|
|
24
|
-
convertFileHandleLocations(rest, blobMap);
|
|
25
|
-
setBlobMap(blobMap);
|
|
26
|
-
return validateRendererType(rendererType, this.pluginManager.getRendererType(rendererType)).renderDirect({ ...rest, renderingProps });
|
|
27
|
-
}
|
|
28
|
-
async execute(args, rpcDriver) {
|
|
29
|
-
const deserializedArgs = await this.deserializeArguments(args, rpcDriver);
|
|
30
|
-
const { sessionId, rendererType } = deserializedArgs;
|
|
31
|
-
if (!sessionId) {
|
|
32
|
-
throw new Error('must pass a unique session id');
|
|
33
|
-
}
|
|
34
|
-
return validateRendererType(rendererType, this.pluginManager.getRendererType(rendererType)).renderInWorker(deserializedArgs);
|
|
35
|
-
}
|
|
36
|
-
async deserializeReturn(serializedReturn, args, rpcDriver) {
|
|
37
|
-
const des = await super.deserializeReturn(serializedReturn, args, rpcDriver);
|
|
38
|
-
return validateRendererType(args.rendererType, this.pluginManager.getRendererType(args.rendererType)).deserializeResultsInClient(des, args);
|
|
39
|
-
}
|
|
40
|
-
}
|
|
@@ -1,16 +0,0 @@
|
|
|
1
|
-
import RpcMethodType from '../../pluggableElementTypes/RpcMethodType.ts';
|
|
2
|
-
import SimpleFeature from '../../util/simpleFeature.ts';
|
|
3
|
-
import type { RenderArgs } from './util.ts';
|
|
4
|
-
import type { Region } from '../../util/index.ts';
|
|
5
|
-
import type { SimpleFeatureSerialized } from '../../util/simpleFeature.ts';
|
|
6
|
-
export default class CoreGetFeatures extends RpcMethodType {
|
|
7
|
-
name: string;
|
|
8
|
-
deserializeReturn(feats: SimpleFeatureSerialized[], args: unknown, rpcDriver: string): Promise<SimpleFeature[]>;
|
|
9
|
-
serializeArguments(args: RenderArgs, rpcDriver: string): Promise<RenderArgs>;
|
|
10
|
-
execute(args: {
|
|
11
|
-
sessionId: string;
|
|
12
|
-
regions: Region[];
|
|
13
|
-
adapterConfig: Record<string, unknown>;
|
|
14
|
-
opts?: any;
|
|
15
|
-
}, rpcDriver: string): Promise<SimpleFeatureSerialized[]>;
|
|
16
|
-
}
|
|
@@ -1,32 +0,0 @@
|
|
|
1
|
-
import { firstValueFrom } from 'rxjs';
|
|
2
|
-
import { toArray } from 'rxjs/operators';
|
|
3
|
-
import { isFeatureAdapter } from "../../data_adapters/BaseAdapter/index.js";
|
|
4
|
-
import { getAdapter } from "../../data_adapters/dataAdapterCache.js";
|
|
5
|
-
import RpcMethodType from "../../pluggableElementTypes/RpcMethodType.js";
|
|
6
|
-
import { renameRegionsIfNeeded } from "../../util/index.js";
|
|
7
|
-
import SimpleFeature from "../../util/simpleFeature.js";
|
|
8
|
-
export default class CoreGetFeatures extends RpcMethodType {
|
|
9
|
-
name = 'CoreGetFeatures';
|
|
10
|
-
async deserializeReturn(feats, args, rpcDriver) {
|
|
11
|
-
const superDeserialized = (await super.deserializeReturn(feats, args, rpcDriver));
|
|
12
|
-
return superDeserialized.map(feat => new SimpleFeature(feat));
|
|
13
|
-
}
|
|
14
|
-
async serializeArguments(args, rpcDriver) {
|
|
15
|
-
const { rootModel } = this.pluginManager;
|
|
16
|
-
const assemblyManager = rootModel.session.assemblyManager;
|
|
17
|
-
const renamedArgs = await renameRegionsIfNeeded(assemblyManager, args);
|
|
18
|
-
return super.serializeArguments(renamedArgs, rpcDriver);
|
|
19
|
-
}
|
|
20
|
-
async execute(args, rpcDriver) {
|
|
21
|
-
const pm = this.pluginManager;
|
|
22
|
-
const deserializedArgs = await this.deserializeArguments(args, rpcDriver);
|
|
23
|
-
const { sessionId, adapterConfig, regions, opts } = deserializedArgs;
|
|
24
|
-
const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
|
|
25
|
-
if (!isFeatureAdapter(dataAdapter)) {
|
|
26
|
-
throw new Error('Adapter does not support retrieving features');
|
|
27
|
-
}
|
|
28
|
-
const ret = dataAdapter.getFeaturesInMultipleRegions(regions, opts);
|
|
29
|
-
const r = await firstValueFrom(ret.pipe(toArray()));
|
|
30
|
-
return r.map(f => f.toJSON());
|
|
31
|
-
}
|
|
32
|
-
}
|
|
@@ -1,15 +0,0 @@
|
|
|
1
|
-
import type { ServerSideRendererType } from '../../pluggableElementTypes/index.ts';
|
|
2
|
-
import type { RenderArgs as ServerSideRenderArgs, RenderArgsSerialized as ServerSideRenderArgsSerialized } from '../../pluggableElementTypes/renderers/ServerSideRendererType.ts';
|
|
3
|
-
import type { Region } from '../../util/index.ts';
|
|
4
|
-
export interface RenderArgs extends ServerSideRenderArgs {
|
|
5
|
-
adapterConfig: Record<string, unknown>;
|
|
6
|
-
rendererType: string;
|
|
7
|
-
}
|
|
8
|
-
export interface RenderArgsSerialized extends ServerSideRenderArgsSerialized {
|
|
9
|
-
assemblyName: string;
|
|
10
|
-
regions: Region[];
|
|
11
|
-
adapterConfig: Record<string, unknown>;
|
|
12
|
-
rendererType: string;
|
|
13
|
-
}
|
|
14
|
-
export declare function validateRendererType<T>(rendererType: string, RendererType: T): ServerSideRendererType;
|
|
15
|
-
export { type RenderResults, type ResultsSerialized, } from '../../pluggableElementTypes/renderers/ServerSideRendererType.ts';
|
package/esm/rpc/methods/util.js
DELETED
|
@@ -1,7 +0,0 @@
|
|
|
1
|
-
export function validateRendererType(rendererType, RendererType) {
|
|
2
|
-
if (!RendererType.ReactComponent) {
|
|
3
|
-
throw new Error(`renderer ${rendererType} has no ReactComponent, it may not be completely implemented yet`);
|
|
4
|
-
}
|
|
5
|
-
return RendererType;
|
|
6
|
-
}
|
|
7
|
-
export {} from "../../pluggableElementTypes/renderers/ServerSideRendererType.js";
|
|
@@ -1,8 +0,0 @@
|
|
|
1
|
-
declare const WebWorkerRpcDriverConfigSchema: import("../configuration/configurationSchema.ts").ConfigurationSchemaType<{}, import("../configuration/configurationSchema.ts").ConfigurationSchemaOptions<import("../configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
2
|
-
workerCount: {
|
|
3
|
-
type: string;
|
|
4
|
-
description: string;
|
|
5
|
-
defaultValue: number;
|
|
6
|
-
};
|
|
7
|
-
}, import("../configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
|
|
8
|
-
export default WebWorkerRpcDriverConfigSchema;
|
|
@@ -1,8 +0,0 @@
|
|
|
1
|
-
import BaseRpcDriverConfigSchema from "./baseRpcConfig.js";
|
|
2
|
-
import { ConfigurationSchema } from "../configuration/index.js";
|
|
3
|
-
function x() { }
|
|
4
|
-
const WebWorkerRpcDriverConfigSchema = ConfigurationSchema('WebWorkerRpcDriver', {}, {
|
|
5
|
-
baseConfiguration: BaseRpcDriverConfigSchema,
|
|
6
|
-
explicitlyTyped: true,
|
|
7
|
-
});
|
|
8
|
-
export default WebWorkerRpcDriverConfigSchema;
|
package/esm/ui/MenuButton.d.ts
DELETED
|
@@ -1 +0,0 @@
|
|
|
1
|
-
export { default } from './CascadingMenuButton.tsx';
|
package/esm/ui/MenuButton.js
DELETED
|
@@ -1 +0,0 @@
|
|
|
1
|
-
export { default } from "./CascadingMenuButton.js";
|
package/esm/ui/MenuItems.d.ts
DELETED
|
@@ -1,15 +0,0 @@
|
|
|
1
|
-
interface MenuItemEndDecorationSubMenuProps {
|
|
2
|
-
type: 'subMenu';
|
|
3
|
-
}
|
|
4
|
-
interface MenuItemEndDecorationSelectorProps {
|
|
5
|
-
type: 'checkbox' | 'radio';
|
|
6
|
-
checked: boolean;
|
|
7
|
-
disabled?: boolean;
|
|
8
|
-
}
|
|
9
|
-
type MenuItemEndDecorationProps = MenuItemEndDecorationSubMenuProps | MenuItemEndDecorationSelectorProps;
|
|
10
|
-
export declare function MenuItemEndDecoration(props: MenuItemEndDecorationProps): import("react/jsx-runtime").JSX.Element;
|
|
11
|
-
export declare function LoadingMenuItem(): import("react/jsx-runtime").JSX.Element;
|
|
12
|
-
export declare function ErrorMenuItem({ error }: {
|
|
13
|
-
error: unknown;
|
|
14
|
-
}): import("react/jsx-runtime").JSX.Element;
|
|
15
|
-
export {};
|
package/esm/ui/MenuItems.js
DELETED
|
@@ -1,59 +0,0 @@
|
|
|
1
|
-
import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
|
|
2
|
-
import ArrowRightIcon from '@mui/icons-material/ArrowRight';
|
|
3
|
-
import CheckBoxIcon from '@mui/icons-material/CheckBox';
|
|
4
|
-
import CheckBoxOutlineBlankIcon from '@mui/icons-material/CheckBoxOutlineBlank';
|
|
5
|
-
import RadioButtonCheckedIcon from '@mui/icons-material/RadioButtonChecked';
|
|
6
|
-
import RadioButtonUncheckedIcon from '@mui/icons-material/RadioButtonUnchecked';
|
|
7
|
-
import { CircularProgress, ListItemIcon, ListItemText, MenuItem, } from '@mui/material';
|
|
8
|
-
import { makeStyles } from "../util/tss-react/index.js";
|
|
9
|
-
const useStyles = makeStyles()({
|
|
10
|
-
menuItemEndDecoration: {
|
|
11
|
-
padding: 0,
|
|
12
|
-
margin: 0,
|
|
13
|
-
height: 16,
|
|
14
|
-
},
|
|
15
|
-
});
|
|
16
|
-
export function MenuItemEndDecoration(props) {
|
|
17
|
-
const { classes } = useStyles();
|
|
18
|
-
const { type } = props;
|
|
19
|
-
let checked;
|
|
20
|
-
let disabled;
|
|
21
|
-
if ('checked' in props) {
|
|
22
|
-
;
|
|
23
|
-
({ checked, disabled } = props);
|
|
24
|
-
}
|
|
25
|
-
let icon;
|
|
26
|
-
switch (type) {
|
|
27
|
-
case 'subMenu': {
|
|
28
|
-
icon = _jsx(ArrowRightIcon, { color: "action" });
|
|
29
|
-
break;
|
|
30
|
-
}
|
|
31
|
-
case 'checkbox': {
|
|
32
|
-
if (checked) {
|
|
33
|
-
const color = disabled ? 'inherit' : undefined;
|
|
34
|
-
icon = _jsx(CheckBoxIcon, { color: color });
|
|
35
|
-
}
|
|
36
|
-
else {
|
|
37
|
-
icon = _jsx(CheckBoxOutlineBlankIcon, { color: "action" });
|
|
38
|
-
}
|
|
39
|
-
break;
|
|
40
|
-
}
|
|
41
|
-
case 'radio': {
|
|
42
|
-
if (checked) {
|
|
43
|
-
const color = disabled ? 'inherit' : undefined;
|
|
44
|
-
icon = _jsx(RadioButtonCheckedIcon, { color: color });
|
|
45
|
-
}
|
|
46
|
-
else {
|
|
47
|
-
icon = _jsx(RadioButtonUncheckedIcon, { color: "action" });
|
|
48
|
-
}
|
|
49
|
-
break;
|
|
50
|
-
}
|
|
51
|
-
}
|
|
52
|
-
return _jsx("div", { className: classes.menuItemEndDecoration, children: icon });
|
|
53
|
-
}
|
|
54
|
-
export function LoadingMenuItem() {
|
|
55
|
-
return (_jsxs(MenuItem, { disabled: true, children: [_jsx(ListItemIcon, { children: _jsx(CircularProgress, { size: 20 }) }), _jsx(ListItemText, { primary: "Loading..." })] }));
|
|
56
|
-
}
|
|
57
|
-
export function ErrorMenuItem({ error }) {
|
|
58
|
-
return (_jsx(MenuItem, { disabled: true, children: _jsx(ListItemText, { primary: "Error loading menu", secondary: error instanceof Error ? error.message : String(error) }) }));
|
|
59
|
-
}
|
package/esm/ui/useEvent.d.ts
DELETED
|
@@ -1 +0,0 @@
|
|
|
1
|
-
export declare function useEvent<Fn extends (...args: any[]) => any>(handler: Fn): Fn;
|
package/esm/ui/useEvent.js
DELETED
|
@@ -1,10 +0,0 @@
|
|
|
1
|
-
import * as React from 'react';
|
|
2
|
-
export function useEvent(handler) {
|
|
3
|
-
const handlerRef = React.useRef(null);
|
|
4
|
-
React.useLayoutEffect(() => {
|
|
5
|
-
handlerRef.current = handler;
|
|
6
|
-
});
|
|
7
|
-
return React.useCallback((...args) => {
|
|
8
|
-
handlerRef.current?.(...args);
|
|
9
|
-
}, []);
|
|
10
|
-
}
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
export declare function blobToDataURL(blob: Blob): Promise<string>;
|
|
@@ -1,14 +0,0 @@
|
|
|
1
|
-
export function blobToDataURL(blob) {
|
|
2
|
-
const a = new FileReader();
|
|
3
|
-
return new Promise((resolve, reject) => {
|
|
4
|
-
a.onload = e => {
|
|
5
|
-
if (e.target) {
|
|
6
|
-
resolve(e.target.result);
|
|
7
|
-
}
|
|
8
|
-
else {
|
|
9
|
-
reject(new Error('unknown result reading blob from canvas'));
|
|
10
|
-
}
|
|
11
|
-
};
|
|
12
|
-
a.readAsDataURL(blob);
|
|
13
|
-
});
|
|
14
|
-
}
|
|
@@ -1,11 +0,0 @@
|
|
|
1
|
-
export default class CompositeMap<T, U> {
|
|
2
|
-
private submaps;
|
|
3
|
-
constructor(submaps: Map<T, U>[]);
|
|
4
|
-
has(id: T): boolean;
|
|
5
|
-
get(id: T): U | undefined;
|
|
6
|
-
values(): Generator<U, void, unknown>;
|
|
7
|
-
keys(): Generator<T, void, unknown>;
|
|
8
|
-
find<V>(f: (arg0: U) => V): U | undefined;
|
|
9
|
-
[Symbol.iterator](): Generator<readonly [T, U | undefined], void, unknown>;
|
|
10
|
-
entries(): Generator<readonly [T, U | undefined], void, unknown>;
|
|
11
|
-
}
|