@jbrowse/core 4.3.0 → 5.0.0-beta.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +822 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +13 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +33 -22
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +8 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +117 -19
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -8
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +12 -5
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +28 -17
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -40
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +6 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +46 -30
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +20 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +66 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +17 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +3 -9
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +3 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +7 -14
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +2 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +19 -13
- package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +5 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +8 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +32 -10
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +18 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +7 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +62 -24
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +10 -5
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +64 -41
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +17 -8
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +19 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +5 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +15 -18
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +33 -17
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +3 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +7 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +11 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +29 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -6
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +18 -6
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +11 -29
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +9 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +63 -58
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +7 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +38 -51
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +19 -27
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +18 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +12 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +97 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +50 -63
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +62 -59
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.d.ts +21 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.js +24 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +5 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +93 -75
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +4 -11
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +5 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +21 -48
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.js +20 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +6 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +33 -13
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +7 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +67 -11
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.d.ts +14 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.js +42 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +7 -7
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +9 -9
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +28 -44
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.d.ts +23 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.js +31 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +90 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +145 -23
- package/esm/BaseFeatureWidget/configSchema.js +1 -1
- package/esm/BaseFeatureWidget/formatDetails.d.ts +38 -0
- package/esm/BaseFeatureWidget/formatDetails.js +103 -0
- package/esm/BaseFeatureWidget/index.d.ts +3 -1
- package/esm/BaseFeatureWidget/index.js +2 -2
- package/esm/BaseFeatureWidget/stateModelFactory.d.ts +80 -62
- package/esm/BaseFeatureWidget/stateModelFactory.js +128 -29
- package/esm/BaseFeatureWidget/types.d.ts +4 -3
- package/esm/BaseFeatureWidget/util.d.ts +4 -29
- package/esm/BaseFeatureWidget/util.js +20 -84
- package/esm/CorePlugin.js +11 -6
- package/esm/PhasedScheduler.d.ts +4 -2
- package/esm/PhasedScheduler.js +18 -2
- package/esm/Plugin.d.ts +6 -1
- package/esm/Plugin.js +7 -0
- package/esm/PluginLoader.d.ts +41 -40
- package/esm/PluginLoader.js +206 -78
- package/esm/PluginManager.d.ts +421 -55
- package/esm/PluginManager.js +461 -89
- package/esm/ReExports/BaseFeatureDetails.js +7 -6
- package/esm/ReExports/MuiDataGridReExports.d.ts +2 -2
- package/esm/ReExports/MuiDataGridReExports.js +58 -130
- package/esm/ReExports/MuiReExports.d.ts +3 -134
- package/esm/ReExports/MuiReExports.js +43 -16
- package/esm/ReExports/MuiStylesReExports.d.ts +66 -0
- package/esm/ReExports/MuiStylesReExports.js +55 -0
- package/esm/ReExports/index.js +1 -1
- package/esm/ReExports/lazify.d.ts +2 -2
- package/esm/ReExports/lazify.js +16 -3
- package/esm/ReExports/list.js +54 -229
- package/esm/ReExports/modules.js +62 -93
- package/esm/ReExports/muiComponentNames.d.ts +18 -0
- package/esm/ReExports/muiComponentNames.js +130 -0
- package/esm/ReExports/publicUtil.d.ts +1 -0
- package/esm/ReExports/publicUtil.js +28 -0
- package/esm/ReExports/registry.d.ts +2 -0
- package/esm/ReExports/registry.js +28 -0
- package/esm/ReExports/sharedModules.d.ts +96 -0
- package/esm/ReExports/sharedModules.js +59 -0
- package/esm/ReExports/uiStub.d.ts +1 -0
- package/esm/ReExports/uiStub.js +13 -0
- package/esm/ReExports/workerModules.d.ts +2 -0
- package/esm/ReExports/workerModules.js +10 -0
- package/esm/TextSearch/BaseResults.d.ts +20 -21
- package/esm/TextSearch/BaseResults.js +8 -33
- package/esm/TextSearch/TextSearchManager.d.ts +14 -34
- package/esm/TextSearch/TextSearchManager.js +87 -34
- package/esm/assemblyManager/assembly.d.ts +307 -34
- package/esm/assemblyManager/assembly.js +551 -262
- package/esm/assemblyManager/assemblyAdapters.d.ts +12 -0
- package/esm/assemblyManager/assemblyAdapters.js +18 -0
- package/esm/assemblyManager/assemblyConfigSchema.d.ts +192 -17
- package/esm/assemblyManager/assemblyConfigSchema.js +213 -19
- package/esm/assemblyManager/assemblyManager.d.ts +711 -303
- package/esm/assemblyManager/assemblyManager.js +351 -46
- package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +32 -0
- package/esm/assemblyManager/expandAssemblyConfigShorthand.js +85 -0
- package/esm/assemblyManager/geneticCodes.d.ts +21 -0
- package/esm/assemblyManager/geneticCodes.js +47 -0
- package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +9 -0
- package/esm/assemblyManager/getSequenceAdapterConfig.js +12 -0
- package/esm/assemblyManager/index.d.ts +1 -1
- package/esm/assemblyManager/index.js +2 -2
- package/esm/assemblyManager/loadRefNameMap.d.ts +5 -0
- package/esm/assemblyManager/loadRefNameMap.js +80 -0
- package/esm/assemblyManager/refNameColors.d.ts +1 -0
- package/esm/assemblyManager/refNameColors.js +32 -0
- package/esm/assemblyManager/refNameMaps.d.ts +26 -0
- package/esm/assemblyManager/refNameMaps.js +87 -0
- package/esm/assemblyManager/refNameMismatch.d.ts +54 -0
- package/esm/assemblyManager/refNameMismatch.js +66 -0
- package/esm/checkPlugins.d.ts +11 -0
- package/esm/checkPlugins.js +77 -0
- package/esm/configuration/configurationSchema.d.ts +122 -20
- package/esm/configuration/configurationSchema.js +374 -140
- package/esm/configuration/configurationSlot.d.ts +283 -30
- package/esm/configuration/configurationSlot.js +205 -226
- package/esm/configuration/formatAboutConfigSchema.d.ts +55 -0
- package/esm/configuration/formatAboutConfigSchema.js +58 -0
- package/esm/configuration/formatDetailsConfigSchema.d.ts +80 -0
- package/esm/configuration/formatDetailsConfigSchema.js +90 -0
- package/esm/configuration/fullConfSnapshot.d.ts +28 -0
- package/esm/configuration/fullConfSnapshot.js +66 -0
- package/esm/configuration/getConf.d.ts +88 -0
- package/esm/configuration/getConf.js +74 -0
- package/esm/configuration/index.d.ts +19 -3
- package/esm/configuration/index.js +19 -2
- package/esm/configuration/mergeFormatCallbacks.d.ts +15 -0
- package/esm/configuration/mergeFormatCallbacks.js +24 -0
- package/esm/configuration/promotableDefaults.d.ts +199 -0
- package/esm/configuration/promotableDefaults.js +332 -0
- package/esm/configuration/promotablePin.d.ts +55 -0
- package/esm/configuration/promotableResolve.d.ts +108 -0
- package/esm/configuration/promotableResolve.js +117 -0
- package/esm/configuration/promotableSlots.d.ts +12 -0
- package/esm/configuration/promotableSlots.js +45 -0
- package/esm/configuration/readConfObject.d.ts +56 -0
- package/esm/configuration/readConfObject.js +161 -0
- package/esm/configuration/schemaRegistry.d.ts +35 -0
- package/esm/configuration/schemaRegistry.js +50 -0
- package/esm/configuration/schemaTypes.d.ts +23 -0
- package/esm/configuration/schemaTypes.js +94 -0
- package/esm/configuration/slotFacade.d.ts +82 -0
- package/esm/configuration/slotFacade.js +89 -0
- package/esm/configuration/slotShape.d.ts +12 -0
- package/esm/configuration/slotShape.js +84 -0
- package/esm/configuration/slotValueUtils.d.ts +17 -0
- package/esm/configuration/slotValueUtils.js +25 -0
- package/esm/configuration/tabixIndexFields.d.ts +44 -0
- package/esm/configuration/tabixIndexFields.js +45 -0
- package/esm/configuration/tabixShorthand.d.ts +34 -0
- package/esm/configuration/tabixShorthand.js +45 -0
- package/esm/configuration/types.d.ts +170 -7
- package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +24 -10
- package/esm/data_adapters/BaseAdapter/BaseAdapter.js +23 -15
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +132 -7
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +136 -25
- package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +1 -0
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +13 -5
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +9 -7
- package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +2 -1
- package/esm/data_adapters/BaseAdapter/CytobandAdapter.d.ts +7 -0
- package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +2 -1
- package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +29 -0
- package/esm/data_adapters/BaseAdapter/featureDensity.js +17 -0
- package/esm/data_adapters/BaseAdapter/getAdapterId.d.ts +2 -0
- package/esm/data_adapters/BaseAdapter/getAdapterId.js +9 -0
- package/esm/data_adapters/BaseAdapter/index.d.ts +7 -4
- package/esm/data_adapters/BaseAdapter/index.js +6 -5
- package/esm/data_adapters/BaseAdapter/stats.d.ts +37 -5
- package/esm/data_adapters/BaseAdapter/stats.js +89 -24
- package/esm/data_adapters/BaseAdapter/types.d.ts +11 -8
- package/esm/data_adapters/BaseAdapter/types.js +1 -0
- package/esm/data_adapters/BaseAdapter/util.d.ts +5 -1
- package/esm/data_adapters/BaseAdapter/util.js +14 -3
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +1 -1
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +4 -4
- package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +36 -4
- package/esm/data_adapters/CytobandAdapter/configSchema.js +46 -2
- package/esm/data_adapters/CytobandAdapter/index.js +3 -3
- package/esm/data_adapters/adapterSessionRefcount.d.ts +61 -0
- package/esm/data_adapters/adapterSessionRefcount.js +96 -0
- package/esm/data_adapters/dataAdapterCache.d.ts +35 -1
- package/esm/data_adapters/dataAdapterCache.js +62 -22
- package/esm/data_adapters/getFeatureAdapter.d.ts +22 -0
- package/esm/data_adapters/getFeatureAdapter.js +27 -0
- package/esm/data_adapters/getSequenceSubAdapter.d.ts +21 -0
- package/esm/data_adapters/getSequenceSubAdapter.js +44 -0
- package/esm/pluggableElementTypes/AdapterType.d.ts +52 -2
- package/esm/pluggableElementTypes/AdapterType.js +44 -5
- package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +6 -1
- package/esm/pluggableElementTypes/AddTrackWorkflowType.js +3 -1
- package/esm/pluggableElementTypes/ConnectionType.d.ts +5 -5
- package/esm/pluggableElementTypes/ConnectionType.js +1 -1
- package/esm/pluggableElementTypes/DisplayType.d.ts +19 -10
- package/esm/pluggableElementTypes/DisplayType.js +53 -5
- package/esm/pluggableElementTypes/InternetAccountType.js +1 -1
- package/esm/pluggableElementTypes/PluggableElementBase.d.ts +13 -0
- package/esm/pluggableElementTypes/PluggableElementBase.js +13 -0
- package/esm/pluggableElementTypes/RpcMethodType.d.ts +132 -12
- package/esm/pluggableElementTypes/RpcMethodType.js +263 -98
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +19 -9
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +26 -20
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.d.ts +5 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.js +18 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.d.ts +5 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.js +10 -0
- package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +3 -3
- package/esm/pluggableElementTypes/TextSearchAdapterType.js +3 -1
- package/esm/pluggableElementTypes/TrackType.d.ts +2 -1
- package/esm/pluggableElementTypes/TrackType.js +1 -1
- package/esm/pluggableElementTypes/ViewType.d.ts +27 -3
- package/esm/pluggableElementTypes/ViewType.js +84 -4
- package/esm/pluggableElementTypes/WidgetType.d.ts +2 -2
- package/esm/pluggableElementTypes/WidgetType.js +1 -1
- package/esm/pluggableElementTypes/addMenuItems.d.ts +87 -0
- package/esm/pluggableElementTypes/addMenuItems.js +82 -0
- package/esm/pluggableElementTypes/extendElementType.d.ts +30 -0
- package/esm/pluggableElementTypes/extendElementType.js +73 -0
- package/esm/pluggableElementTypes/index.d.ts +7 -7
- package/esm/pluggableElementTypes/index.js +24 -14
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +70 -15
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +90 -10
- package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +646 -84
- package/esm/pluggableElementTypes/models/BaseDisplayModel.js +241 -60
- package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +216 -35
- package/esm/pluggableElementTypes/models/BaseTrackModel.js +365 -83
- package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +216 -16
- package/esm/pluggableElementTypes/models/BaseViewModel.js +150 -16
- package/esm/pluggableElementTypes/models/HighlightsMixin.d.ts +51 -0
- package/esm/pluggableElementTypes/models/HighlightsMixin.js +78 -0
- package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +163 -29
- package/esm/pluggableElementTypes/models/InternetAccountModel.js +218 -48
- package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +177 -0
- package/esm/pluggableElementTypes/models/assertDisplayContract.js +239 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +22 -8
- package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -2
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +39 -20
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +23 -2
- package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +181 -65
- package/esm/pluggableElementTypes/models/baseTrackConfig.js +191 -89
- package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +3 -8
- package/esm/pluggableElementTypes/models/components/SaveTrackData.js +113 -139
- package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +55 -0
- package/esm/pluggableElementTypes/models/components/fetchTrackData.js +83 -0
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +40 -0
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +115 -0
- package/esm/pluggableElementTypes/models/index.d.ts +6 -3
- package/esm/pluggableElementTypes/models/index.js +10 -8
- package/esm/pluggableElementTypes/models/migrateTrackConfig.d.ts +34 -0
- package/esm/pluggableElementTypes/models/migrateTrackConfig.js +54 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +75 -7
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +9 -3
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +153 -103
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +6 -1
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +70 -74
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +9 -1
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.d.ts +21 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.js +51 -0
- package/esm/pluggableElementTypes/models/uriMatchesDomains.d.ts +29 -0
- package/esm/pluggableElementTypes/models/uriMatchesDomains.js +62 -0
- package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.d.ts +5 -4
- package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.js +20 -10
- package/esm/pluginDefinitions.d.ts +198 -0
- package/esm/pluginDefinitions.js +220 -0
- package/esm/rpc/BaseRpcDriver.d.ts +27 -35
- package/esm/rpc/BaseRpcDriver.js +74 -107
- package/esm/rpc/MainThreadRpcDriver.d.ts +9 -10
- package/esm/rpc/MainThreadRpcDriver.js +18 -29
- package/esm/rpc/RpcClient.d.ts +38 -0
- package/esm/rpc/RpcClient.js +154 -0
- package/esm/rpc/RpcManager.d.ts +116 -27
- package/esm/rpc/RpcManager.js +177 -50
- package/esm/rpc/RpcRegistry.d.ts +275 -0
- package/esm/rpc/RpcRegistry.js +1 -0
- package/esm/rpc/RpcServer.d.ts +41 -0
- package/esm/rpc/RpcServer.js +235 -0
- package/esm/rpc/WebWorkerRpcDriver.d.ts +71 -24
- package/esm/rpc/WebWorkerRpcDriver.js +312 -27
- package/esm/rpc/byteBudget.d.ts +58 -0
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- package/esm/util/nextTick.d.ts +0 -1
- package/esm/util/nextTick.js +0 -3
- package/esm/util/offscreenCanvasGetSerializingSvg.d.ts +0 -5
- package/esm/util/offscreenCanvasGetSerializingSvg.js +0 -9
- package/esm/util/offscreenCanvasUtils.d.ts +0 -12
- package/esm/util/offscreenCanvasUtils.js +0 -19
- package/esm/util/renderToAbstractCanvas.d.ts +0 -17
- package/esm/util/renderToAbstractCanvas.js +0 -53
- package/esm/util/transferables.d.ts +0 -2
- package/esm/util/transferables.js +0 -35
- package/esm/util/tss-react/mui/index.d.ts +0 -1
- package/esm/util/tss-react/mui/index.js +0 -1
- package/esm/util/tss-react/mui/mui.d.ts +0 -10
- package/esm/util/tss-react/mui/mui.js +0 -5
- package/esm/util/when.d.ts +0 -1
- package/esm/util/when.js +0 -1
- /package/esm/{data_adapters/BaseAdapter/BaseOptions.js → configuration/promotablePin.js} +0 -0
- /package/esm/{util/layouts/BaseLayout.js → data_adapters/BaseAdapter/CytobandAdapter.js} +0 -0
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/**
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* What a plugin definition is, and everything that can be answered by looking
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* at one — its url, its name, whether two describe the same plugin.
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*
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* Kept apart from PluginLoader, which pulls in ReExports (effectively all of
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* core) to be able to run a plugin. Inspecting a definition must not cost that:
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* the plugin store resolves definitions and would otherwise import core's
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* config layer back into itself.
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*/
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export function isUMDPluginDefinition(def) {
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return 'umdUrl' in def || 'url' in def || 'umdLoc' in def;
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}
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export function isESMPluginDefinition(def) {
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return 'esmUrl' in def || 'esmLoc' in def;
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}
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export function isCJSPluginDefinition(def) {
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return 'cjsUrl' in def;
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}
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/**
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* Whether a definition names a store entry to resolve. Deliberately not part of
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* the CJS/ESM/UMD trio `assertSingleKind` counts: those are loaders, and a ref
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* is not one. A ref names *which plugin*, and pairing it with a url is the
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* supported migration shape rather than the two-loaders ambiguity that guard
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* exists to refuse.
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*/
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export function isStorePluginDefinition(def) {
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return 'storePlugin' in def && typeof def.storePlugin === 'string';
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}
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/** The store entry a definition names, resolved or not. */
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export function storePluginName(def) {
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return isStorePluginDefinition(def) ? def.storePlugin : undefined;
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}
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// Plugins that used to ship as external config `plugins[]` entries but are now
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// bundled into the jbrowse-web/desktop core build. Remote configs on jbrowse.org
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// still list them, so we drop those entries before loading: core already
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// registers the same elements (and wins, since core plugins register first), and
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// skipping the external copy avoids a redundant network fetch plus a flurry of
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// "already registered" console warnings. Matched on the config-level `name`
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// (the external plugin's UMD-global name, e.g. "MafViewer"/"GWAS"), not the core
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// class name — so this runs AFTER `resolveStorePluginRefs`, which is where a
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// store ref acquires the name to match on. Run it before, and a config naming a
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// vendored plugin by package slips through and installs a second copy beside
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// core's. Apply only in products whose core bundle actually vendors these —
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// not globally — so CLI indexing, @jbrowse/img, and react-circular (which don't
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// bundle them) still load the external plugin. Also drives the plugin store,
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// which hides these so a user can't install a colliding second copy
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// (`installablePlugins`, util/pluginStore.ts).
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export const vendoredPluginNames = new Set(['MafViewer', 'GWAS']);
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/**
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* Desktop's half of the same list — a plugin one product bundles and another does
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* not, which the shared set above cannot express.
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*
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* Blat is in Desktop's corePlugins but deliberately not Web's: Web is where
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* cold-load bundle size is paid, and BLAT is niche. So Desktop's bundled copy is
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* the only one that ships. It is what gives BLAT on a genome the user opened
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* from their own disk, where no config names any plugin, and it is the copy that
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* reaches UCSC through the main-process `blatFetch` bridge and the CAPTCHA-solve
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* window. Web has to load the external entry to have BLAT at all.
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*
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* Naming it drops a config's `plugins[]` entry for Blat before Desktop's loader
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* sees it, so a config that carries one does not install a second copy beside
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* the bundled one and append its Tools menu items twice. Nothing carries one
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* today: jb2hubs stamps `sequence.metadata.blatDb`, which names the UCSC db an
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* assembly is searchable under and says nothing about loading a plugin. The
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* entry is a guard for the UMD build (`plugins/blat/scripts/build-umd.ts`),
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* which a config can name and which is how Web would pick BLAT up.
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*
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* It lives here beside the shared set rather than in jbrowse-desktop because the
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* two are read together — a surface consulting one and not the other offers an
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* install the loader then drops, which is what Desktop's plugin store and global
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* plugins dialog both did.
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*/
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export const desktopVendoredPluginNames = ['Blat'];
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export function dropVendoredPlugins(defs, alsoVendored = []) {
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const vendored = new Set([...vendoredPluginNames, ...alsoVendored]);
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return defs.filter(d => !(isUMDPluginDefinition(d) && vendored.has(d.name)));
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}
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// The two functions below describe a definition by picking the one url it will
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// be loaded from, so both dispatch in loadPlugin's order — CJS, then ESM, then
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// UMD. Keep them in step with it: they are what the plugin trust gate
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// (checkPlugins) reads and what the untrusted-plugin prompt shows, so an order
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// that disagrees with the loader's vets one url and executes another. They once
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// did disagree, and a definition carrying both `umdUrl` and `cjsUrl` was
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// approved on its jbrowse.org umd url while loadPlugin require()d its cjs one.
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// assertSingleKind now rejects such a definition outright; this order is the
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// second half of that guarantee, since the gate runs before the loader does.
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export function pluginDescriptionString(d) {
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if (isCJSPluginDefinition(d)) {
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return `CJS plugin ${d.cjsUrl}`;
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}
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else if (isESMPluginDefinition(d)) {
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return `ESM plugin ${'esmUrl' in d ? d.esmUrl : d.esmLoc.uri}`;
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}
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else if (isUMDPluginDefinition(d)) {
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return `UMD plugin ${d.name}`;
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}
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else if (isStorePluginDefinition(d)) {
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// an unresolved ref, which is what a resolution failure is reported on: it
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// has no url yet, so the store name is the only thing that identifies it
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return `store plugin ${d.storePlugin}`;
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}
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else {
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return 'unknown plugin';
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}
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}
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/**
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* The url a definition loads from, or undefined when it names no loader at all.
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* Comparisons between definitions go through this rather than `pluginUrl`, whose
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* 'unknown url' placeholder is display text: two unloadable definitions are not
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* the same plugin just because neither has a url.
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*/
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export function maybePluginUrl(d) {
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if (isCJSPluginDefinition(d)) {
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return d.cjsUrl;
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}
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else if (isESMPluginDefinition(d)) {
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return 'esmUrl' in d ? d.esmUrl : d.esmLoc.uri;
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}
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else if (isUMDPluginDefinition(d)) {
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return 'umdLoc' in d ? d.umdLoc.uri : 'umdUrl' in d ? d.umdUrl : d.url;
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}
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else {
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return undefined;
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}
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}
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export function pluginUrl(d) {
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return maybePluginUrl(d) ?? 'unknown url';
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}
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/**
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* Whether a definition loads from exactly `url` — the question behind "which
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* definition is this loaded plugin", "is this one in the session's list", "which
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* entry does an uninstall remove".
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*
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* The two undefined guards are the whole point, and both were live as
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* `pluginUrl(d) === url` comparisons. A definition naming no loader reads back as
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* the literal `'unknown url'`, so any two of them compared equal: approving one
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* marked every other unloadable definition trusted, and removing one filtered
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* every other unloadable one out of the config. And the url side is absent for a
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* core or global plugin (no install url was recorded), which must match no
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* definition rather than the first url-less one.
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*/
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export function isPluginUrl(d, url) {
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const actual = maybePluginUrl(d);
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return actual !== undefined && actual === url;
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}
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export function pluginName(definition) {
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return 'name' in definition ? definition.name : undefined;
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}
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export function pluginDefinitionMetadata(definition) {
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return {
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name: pluginName(definition),
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url: pluginUrl(definition),
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};
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}
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/**
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* How to name a definition to a person — a crash marker saying what was
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* loading, a warning listing what a host did not pass in.
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*
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* A ref that has not been resolved yet has no url and often no `name`, and
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* everything here used to fall through to `pluginUrl`'s 'unknown url' for it:
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* a marker naming nothing, which is the difference between a banner the user
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* can act on and one that says only that something went wrong.
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*/
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export function pluginLabel(definition) {
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const name = pluginName(definition) ?? storePluginName(definition);
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const url = maybePluginUrl(definition);
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if (name === undefined) {
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return pluginUrl(definition);
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}
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return url === undefined ? name : `${name} (${url})`;
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}
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/**
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* Whether two definitions describe the same plugin. They can without being
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* identical — a UMD name+url in a config, an esmUrl in the global list, a store
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* ref in one and the pinned definition it resolves to in the other — so a
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* shared store package, a shared name, or a shared url is each enough. All
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* three are optional (an ESM definition carries no name, an unloadable one no
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* url, a hand-written one no package), and a missing field never matches: two
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* definitions are not the same plugin just because neither names one.
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*
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* The store name is checked first because it is the only one of the three that
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* survives resolution intact. A ref and its resolved form share it; they share
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* no url, and a *bare* ref has no `name` until the manifest supplies one — so
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* this clause is doing work even though a resolved definition's `storePlugin`
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* and `name` agree.
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*
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* This is the single answer to "is this plugin already installed" — dedupe
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* across plugin sources, the plugin store's installed-check — so those cannot
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* drift apart and disagree about what is a duplicate.
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*/
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export function samePlugin(a, b) {
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const [refA, refB] = [storePluginName(a), storePluginName(b)];
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const [nameA, nameB] = [pluginName(a), pluginName(b)];
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const [urlA, urlB] = [maybePluginUrl(a), maybePluginUrl(b)];
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return ((refA !== undefined && refA === refB) ||
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(nameA !== undefined && nameA === nameB) ||
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(urlA !== undefined && urlA === urlB));
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}
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/**
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* The candidates no definition in `existing` already describes — `dedupePlugins`
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* across two lists whose first one is already settled, for a source loaded after
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* another rather than merged with it.
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*/
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export function pluginsNotIn(candidates, existing) {
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return candidates.filter(c => !existing.some(e => samePlugin(e, c)));
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}
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/**
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* Drops later definitions that name a plugin an earlier one already did, so the
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* first source listed wins: a config's own (version-pinned) entry takes
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* precedence over the same plugin from the user's global list.
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*/
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export function dedupePlugins(plugins) {
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const kept = [];
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for (const plugin of plugins) {
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if (!kept.some(k => samePlugin(k, plugin))) {
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kept.push(plugin);
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}
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}
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return kept;
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}
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@@ -1,40 +1,32 @@
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import type PluginManager from '../PluginManager.ts';
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import type { AnyConfigurationModel } from '../configuration/index.ts';
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rpcDriverClassName: string;
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}): Promise<unknown>;
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}
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export interface RpcDriverConstructorArgs {
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config: AnyConfigurationModel;
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}
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declare class LazyWorker {
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driver: BaseRpcDriver;
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workerP?: Promise<WorkerHandle> | undefined;
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constructor(driver: BaseRpcDriver);
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getWorker(): Promise<WorkerHandle>;
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}
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import type RpcMethodType from '../pluggableElementTypes/RpcMethodType.ts';
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import type { StatusCallback } from '../util/progress.ts';
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import type { RpcHandles } from './RpcRegistry.ts';
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/**
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* The method that drops a session's cached adapters, named once because
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* {@link BaseRpcDriver.freeSession} is the only thing that dispatches it.
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*/
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export declare const CORE_FREE_RESOURCES = "CoreFreeResources";
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export default abstract class BaseRpcDriver {
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-
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private lastWorkerAssignment;
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private workerAssignments;
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abstract makeWorker(): Promise<WorkerHandle>;
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private workerPool?;
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protected pluginManager: PluginManager;
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config: AnyConfigurationModel;
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abstract name: string;
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constructor(pluginManager: PluginManager, config: AnyConfigurationModel);
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/**
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* Drop everything this driver holds for a session — the worker-side adapter
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* cache, and whatever bookkeeping the transport keeps alongside it.
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*
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* A driver operation rather than a `call`, because a free has nothing to do on
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* a transport that never ran this session and must not outlive `destroy`;
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* routing it through `call` did both. ADR-086.
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*
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* The base behavior is the main-thread one: run the method in this realm,
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* where `dataAdapterCache` lives. `invoke`, not `execute`, for the reason
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* `MainThreadRpcDriver.transport` uses it.
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*/
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freeSession(sessionId: string): Promise<void>;
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destroy(): void;
|
|
30
|
+
call(sessionId: string, functionName: string, args: Record<string, unknown> & RpcHandles): Promise<unknown>;
|
|
31
|
+
protected abstract transport(sessionId: string, rpcMethod: RpcMethodType, serializedArgs: Record<string, unknown>, statusCallback: StatusCallback | undefined): Promise<unknown>;
|
|
39
32
|
}
|
|
40
|
-
export {};
|
package/esm/rpc/BaseRpcDriver.js
CHANGED
|
@@ -1,116 +1,83 @@
|
|
|
1
|
-
import {
|
|
2
|
-
|
|
3
|
-
|
|
4
|
-
|
|
5
|
-
|
|
6
|
-
|
|
7
|
-
function detectHardwareConcurrency() {
|
|
8
|
-
const mainThread = typeof window !== 'undefined';
|
|
9
|
-
const canDetect = mainThread && 'hardwareConcurrency' in window.navigator;
|
|
10
|
-
return mainThread && canDetect ? window.navigator.hardwareConcurrency : 1;
|
|
11
|
-
}
|
|
12
|
-
class LazyWorker {
|
|
13
|
-
driver;
|
|
14
|
-
workerP;
|
|
15
|
-
constructor(driver) {
|
|
16
|
-
this.driver = driver;
|
|
17
|
-
}
|
|
18
|
-
async getWorker() {
|
|
19
|
-
if (!this.workerP) {
|
|
20
|
-
this.workerP = this.driver.makeWorker().catch((e) => {
|
|
21
|
-
this.workerP = undefined;
|
|
22
|
-
throw e;
|
|
23
|
-
});
|
|
24
|
-
}
|
|
25
|
-
return this.workerP;
|
|
26
|
-
}
|
|
27
|
-
}
|
|
1
|
+
import { isStopToken, withStopTokenCheck } from '../util/stopToken.js';
|
|
2
|
+
/**
|
|
3
|
+
* The method that drops a session's cached adapters, named once because
|
|
4
|
+
* {@link BaseRpcDriver.freeSession} is the only thing that dispatches it.
|
|
5
|
+
*/
|
|
6
|
+
export const CORE_FREE_RESOURCES = 'CoreFreeResources';
|
|
28
7
|
export default class BaseRpcDriver {
|
|
29
|
-
|
|
30
|
-
workerAssignments = new Map();
|
|
31
|
-
workerPool;
|
|
8
|
+
pluginManager;
|
|
32
9
|
config;
|
|
33
|
-
|
|
34
|
-
|
|
10
|
+
// Held, not threaded. `call`, `transport` and `freeSession` each took one as
|
|
11
|
+
// their first parameter and `RpcManager` passed the same object to all of
|
|
12
|
+
// them on every RPC — a driver is built by the manager that owns it, so it
|
|
13
|
+
// can just have one. Holding it is also what lets `Core-extendWorker` fire
|
|
14
|
+
// where a worker boots rather than on the dispatch path. ADR-086.
|
|
15
|
+
constructor(pluginManager, config) {
|
|
16
|
+
this.pluginManager = pluginManager;
|
|
17
|
+
this.config = config;
|
|
35
18
|
}
|
|
36
|
-
|
|
37
|
-
|
|
38
|
-
|
|
39
|
-
|
|
40
|
-
|
|
41
|
-
|
|
42
|
-
|
|
43
|
-
|
|
44
|
-
|
|
45
|
-
|
|
46
|
-
|
|
47
|
-
|
|
48
|
-
|
|
49
|
-
|
|
50
|
-
|
|
51
|
-
|
|
52
|
-
else if (isStateTreeNode(thing) && !isAlive(thing)) {
|
|
53
|
-
throw new Error('dead state tree node passed to RPC call');
|
|
54
|
-
}
|
|
55
|
-
else if (thing instanceof File) {
|
|
56
|
-
return thing;
|
|
57
|
-
}
|
|
58
|
-
else {
|
|
59
|
-
return Object.fromEntries(Object.entries(thing)
|
|
60
|
-
.filter(e => isCloneable(e[1]))
|
|
61
|
-
.map(([k, v]) => [k, this.filterArgs(v, sessionId)]));
|
|
62
|
-
}
|
|
63
|
-
}
|
|
64
|
-
async remoteAbort(sessionId, functionName, stopTokenId) {
|
|
65
|
-
const worker = await this.getWorker(sessionId);
|
|
66
|
-
await worker.call(functionName, { stopTokenId }, { rpcDriverClassName: this.name });
|
|
67
|
-
}
|
|
68
|
-
createWorkerPool() {
|
|
69
|
-
const hardwareConcurrency = detectHardwareConcurrency();
|
|
70
|
-
const workerCount = readConfObject(this.config, 'workerCount') ||
|
|
71
|
-
clamp(1, Math.max(1, hardwareConcurrency - 1), 5);
|
|
72
|
-
const workers = [];
|
|
73
|
-
for (let i = 0; i < workerCount; i++) {
|
|
74
|
-
workers.push(new LazyWorker(this));
|
|
75
|
-
}
|
|
76
|
-
return workers;
|
|
19
|
+
/**
|
|
20
|
+
* Drop everything this driver holds for a session — the worker-side adapter
|
|
21
|
+
* cache, and whatever bookkeeping the transport keeps alongside it.
|
|
22
|
+
*
|
|
23
|
+
* A driver operation rather than a `call`, because a free has nothing to do on
|
|
24
|
+
* a transport that never ran this session and must not outlive `destroy`;
|
|
25
|
+
* routing it through `call` did both. ADR-086.
|
|
26
|
+
*
|
|
27
|
+
* The base behavior is the main-thread one: run the method in this realm,
|
|
28
|
+
* where `dataAdapterCache` lives. `invoke`, not `execute`, for the reason
|
|
29
|
+
* `MainThreadRpcDriver.transport` uses it.
|
|
30
|
+
*/
|
|
31
|
+
async freeSession(sessionId) {
|
|
32
|
+
await this.pluginManager
|
|
33
|
+
.getRpcMethodType(CORE_FREE_RESOURCES)
|
|
34
|
+
.invoke({ sessionId });
|
|
77
35
|
}
|
|
78
|
-
|
|
79
|
-
|
|
80
|
-
const res = this.createWorkerPool();
|
|
81
|
-
this.workerPool = res;
|
|
82
|
-
return res;
|
|
83
|
-
}
|
|
84
|
-
return this.workerPool;
|
|
85
|
-
}
|
|
86
|
-
async getWorker(sessionId) {
|
|
87
|
-
const workers = this.getWorkerPool();
|
|
88
|
-
let workerNumber = this.workerAssignments.get(sessionId);
|
|
89
|
-
if (workerNumber === undefined) {
|
|
90
|
-
const workerAssignment = (this.lastWorkerAssignment + 1) % workers.length;
|
|
91
|
-
this.workerAssignments.set(sessionId, workerAssignment);
|
|
92
|
-
this.lastWorkerAssignment = workerAssignment;
|
|
93
|
-
workerNumber = workerAssignment;
|
|
94
|
-
}
|
|
95
|
-
return workers[workerNumber].getWorker();
|
|
96
|
-
}
|
|
97
|
-
async call(pluginManager, sessionId, functionName, args, options = {}) {
|
|
36
|
+
destroy() { }
|
|
37
|
+
async call(sessionId, functionName, args) {
|
|
98
38
|
if (!sessionId) {
|
|
99
39
|
throw new TypeError('sessionId is required');
|
|
100
40
|
}
|
|
101
|
-
|
|
102
|
-
|
|
103
|
-
|
|
104
|
-
|
|
105
|
-
|
|
106
|
-
|
|
107
|
-
|
|
108
|
-
|
|
109
|
-
|
|
110
|
-
|
|
111
|
-
|
|
112
|
-
|
|
113
|
-
|
|
114
|
-
|
|
41
|
+
// An RPC method is addressed by string, so a removed or renamed one is not
|
|
42
|
+
// a type error anywhere — it fails here. It fails WELL: `TypeRecord.get`
|
|
43
|
+
// throws naming the method and listing what is registered, which is the
|
|
44
|
+
// "which plugin is missing" answer. No `undefined` check belongs here; one
|
|
45
|
+
// was added and lint called it dead, correctly.
|
|
46
|
+
const rpcMethod = this.pluginManager.getRpcMethodType(functionName);
|
|
47
|
+
// statusCallback is an out-of-band progress handle, not data: each transport
|
|
48
|
+
// wires up its own channel for it, so it must not reach the serialized
|
|
49
|
+
// payload. Everything that does must be structured-cloneable; the worker
|
|
50
|
+
// postMessage clones it and throws on anything that isn't, surfacing bad data
|
|
51
|
+
// at the boundary instead of silently dropping it.
|
|
52
|
+
//
|
|
53
|
+
// Stripped on the way OUT rather than on the way in, so `serializeArguments`
|
|
54
|
+
// can see it. That is not cosmetic: serialization is where the refName map
|
|
55
|
+
// is resolved, and resolving one downloads the adapter's index (and for an
|
|
56
|
+
// in-memory adapter, the whole file). Destructuring the callback off first
|
|
57
|
+
// left that download with nothing to report through — `loadRefNameMap`
|
|
58
|
+
// forwards a `statusCallback` for exactly this and, for every RPC, was
|
|
59
|
+
// handed undefined. The wire payload is identical either way.
|
|
60
|
+
//
|
|
61
|
+
// Serialization is the one long await here, and it is wrapped rather than
|
|
62
|
+
// fenced by hand-placed checks so the check on the FAR side comes with the
|
|
63
|
+
// near one — that is the whole point of `withStopTokenCheck`, and the far
|
|
64
|
+
// one is what was missing. A call whose token was already stopped has
|
|
65
|
+
// nothing to deliver to, so refuse it rather than serializing args, waking a
|
|
66
|
+
// worker and racing a stop notification against the call it means to cancel;
|
|
67
|
+
// and a stop landing DURING serialization had nowhere to be seen at all,
|
|
68
|
+
// because the broadcast it fires reaches only *booted* workers and on a
|
|
69
|
+
// driver's first call `LazyWorker.workerP` is undefined until `transport`
|
|
70
|
+
// reaches `getWorker`. The worker never learned the token was stopped and
|
|
71
|
+
// ground the fetch to completion. SharedArrayBuffer tokens see the stop
|
|
72
|
+
// through shared memory regardless; this is the string-token path, which is
|
|
73
|
+
// every deployment we ship — `stopToken.ts`, "Which path runs where".
|
|
74
|
+
//
|
|
75
|
+
// Callers already treat an abort as the ordinary outcome of a superseded
|
|
76
|
+
// fetch.
|
|
77
|
+
const stopToken = isStopToken(args.stopToken) ? args.stopToken : undefined;
|
|
78
|
+
const { statusCallback } = args;
|
|
79
|
+
const { statusCallback: _outOfBand, ...serializedArgs } = await withStopTokenCheck(stopToken, () => rpcMethod.serializeArguments(args));
|
|
80
|
+
const result = await this.transport(sessionId, rpcMethod, serializedArgs, statusCallback);
|
|
81
|
+
return rpcMethod.deserializeReturn(result, args);
|
|
115
82
|
}
|
|
116
83
|
}
|
|
@@ -1,14 +1,13 @@
|
|
|
1
1
|
import BaseRpcDriver from './BaseRpcDriver.ts';
|
|
2
|
-
import type
|
|
3
|
-
import type
|
|
4
|
-
|
|
5
|
-
|
|
6
|
-
|
|
7
|
-
|
|
2
|
+
import type RpcMethodType from '../pluggableElementTypes/RpcMethodType.ts';
|
|
3
|
+
import type { StatusCallback } from '../util/progress.ts';
|
|
4
|
+
/**
|
|
5
|
+
* RPC driver that runs RPC functions in-band on the main thread. It owns no
|
|
6
|
+
* worker pool, so `destroy` stays the BaseRpcDriver no-op and `freeSession`
|
|
7
|
+
* stays that class's in-realm free — the adapter cache this driver fills is the
|
|
8
|
+
* main thread's own.
|
|
9
|
+
*/
|
|
8
10
|
export default class MainThreadRpcDriver extends BaseRpcDriver {
|
|
9
11
|
name: string;
|
|
10
|
-
|
|
11
|
-
constructor(args: RpcDriverConstructorArgs);
|
|
12
|
-
call(pm: PluginManager, sessionId: string, funcName: string, args: Record<string, unknown>): Promise<unknown>;
|
|
12
|
+
protected transport(_sessionId: string, rpcMethod: RpcMethodType, serializedArgs: Record<string, unknown>, statusCallback: StatusCallback | undefined): Promise<unknown>;
|
|
13
13
|
}
|
|
14
|
-
export {};
|
|
@@ -1,33 +1,22 @@
|
|
|
1
|
-
import BaseRpcDriver from
|
|
2
|
-
|
|
3
|
-
|
|
4
|
-
|
|
5
|
-
|
|
6
|
-
|
|
7
|
-
|
|
1
|
+
import BaseRpcDriver from './BaseRpcDriver.js';
|
|
2
|
+
/**
|
|
3
|
+
* RPC driver that runs RPC functions in-band on the main thread. It owns no
|
|
4
|
+
* worker pool, so `destroy` stays the BaseRpcDriver no-op and `freeSession`
|
|
5
|
+
* stays that class's in-realm free — the adapter cache this driver fills is the
|
|
6
|
+
* main thread's own.
|
|
7
|
+
*/
|
|
8
8
|
export default class MainThreadRpcDriver extends BaseRpcDriver {
|
|
9
9
|
name = 'MainThreadRpcDriver';
|
|
10
|
-
|
|
11
|
-
|
|
12
|
-
|
|
13
|
-
|
|
14
|
-
|
|
15
|
-
|
|
16
|
-
|
|
17
|
-
|
|
18
|
-
|
|
19
|
-
|
|
20
|
-
|
|
21
|
-
throw new Error(`unknown RPC method ${funcName}`);
|
|
22
|
-
}
|
|
23
|
-
if (rpcMethod.supportsDirectExecution()) {
|
|
24
|
-
const result = await rpcMethod.executeDirect(args);
|
|
25
|
-
if (result !== undefined) {
|
|
26
|
-
return result;
|
|
27
|
-
}
|
|
28
|
-
}
|
|
29
|
-
const serializedArgs = await rpcMethod.serializeArguments(args, this.name);
|
|
30
|
-
const result = await rpcMethod.execute(serializedArgs, this.name);
|
|
31
|
-
return rpcMethod.deserializeReturn(result, args, this.name);
|
|
10
|
+
async transport(_sessionId, rpcMethod, serializedArgs, statusCallback) {
|
|
11
|
+
// re-attach the out-of-band statusCallback that BaseRpcDriver.call split off,
|
|
12
|
+
// mirroring how the worker re-wires it on the far side of postMessage —
|
|
13
|
+
// including the case where there is none, which `wrapForRpc` answers by
|
|
14
|
+
// adding no key at all. Spreading `statusCallback: undefined` in would leave
|
|
15
|
+
// the two drivers handing `execute` bags that differ by a key, which is the
|
|
16
|
+
// kind of difference nothing tests and something eventually reads.
|
|
17
|
+
//
|
|
18
|
+
// `invoke`, not `execute` — it is the entry point that deserializes the
|
|
19
|
+
// arguments first, and the worker binds the same one
|
|
20
|
+
return rpcMethod.invoke(statusCallback ? { ...serializedArgs, statusCallback } : serializedArgs);
|
|
32
21
|
}
|
|
33
22
|
}
|
|
@@ -0,0 +1,38 @@
|
|
|
1
|
+
import type { ErrorObject } from './serializeError/index.ts';
|
|
2
|
+
type Listener = (arg: unknown) => void;
|
|
3
|
+
interface RpcMessageData {
|
|
4
|
+
uid: string;
|
|
5
|
+
libRpc?: true;
|
|
6
|
+
error?: string | ErrorObject;
|
|
7
|
+
eventName?: string;
|
|
8
|
+
data?: unknown;
|
|
9
|
+
}
|
|
10
|
+
interface PendingCall {
|
|
11
|
+
resolve: (data: unknown) => void;
|
|
12
|
+
reject: (error: Error) => void;
|
|
13
|
+
}
|
|
14
|
+
export default class RpcClient {
|
|
15
|
+
worker: Worker;
|
|
16
|
+
pending: Map<string, PendingCall>;
|
|
17
|
+
private events;
|
|
18
|
+
private counter;
|
|
19
|
+
constructor(worker: Worker);
|
|
20
|
+
on(event: string, listener: Listener): this;
|
|
21
|
+
off(event: string, listener: Listener): this;
|
|
22
|
+
emit(event: string, data: unknown): this;
|
|
23
|
+
protected handler(e: MessageEvent<RpcMessageData>): void;
|
|
24
|
+
destroy(): void;
|
|
25
|
+
private rejectAllPending;
|
|
26
|
+
protected catch(e: ErrorEvent): void;
|
|
27
|
+
protected reject(uid: string, error: string | ErrorObject): void;
|
|
28
|
+
protected resolve(uid: string, data: unknown): void;
|
|
29
|
+
/**
|
|
30
|
+
* Tell this worker that a stop token has been stopped, so the calls running
|
|
31
|
+
* there see it at their next await boundary and drop their in-flight reads.
|
|
32
|
+
* Fire-and-forget: it settles no pending call, and a worker holding nothing
|
|
33
|
+
* under that id ignores it.
|
|
34
|
+
*/
|
|
35
|
+
notifyStopToken(id: string): void;
|
|
36
|
+
call(method: string, data: unknown): Promise<unknown>;
|
|
37
|
+
}
|
|
38
|
+
export {};
|