@jbrowse/core 4.3.0 → 5.0.0-beta.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1140) hide show
  1. package/README.md +822 -0
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +13 -3
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +33 -22
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +8 -3
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +117 -19
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -8
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -4
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -1
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -2
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +1 -1
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -4
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +1 -1
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +12 -5
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +28 -17
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -1
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -40
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +6 -4
  19. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +46 -30
  20. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +20 -0
  21. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +66 -0
  22. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -1
  23. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -2
  24. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -0
  25. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +17 -0
  26. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +1 -1
  27. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +3 -9
  28. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +3 -2
  29. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +3 -3
  30. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
  31. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +7 -14
  32. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +2 -1
  33. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +19 -13
  34. package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +5 -4
  35. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +8 -1
  36. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +32 -10
  37. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +18 -0
  38. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +10 -0
  39. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +7 -4
  40. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +62 -24
  41. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +10 -5
  42. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +64 -41
  43. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +1 -1
  44. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +17 -8
  45. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +6 -0
  46. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +19 -0
  47. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +5 -4
  48. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +15 -18
  49. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +1 -1
  50. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +33 -17
  51. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +3 -3
  52. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +7 -3
  53. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +11 -0
  54. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +29 -0
  55. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -1
  56. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -6
  57. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +18 -6
  58. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +11 -29
  59. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +9 -2
  60. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +63 -58
  61. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +7 -3
  62. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +38 -51
  63. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -1
  64. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +19 -27
  65. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +6 -0
  66. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +18 -0
  67. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +12 -0
  68. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +97 -0
  69. package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -1
  70. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +50 -63
  71. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +62 -59
  72. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.d.ts +21 -0
  73. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.js +24 -0
  74. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +5 -3
  75. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +93 -75
  76. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -1
  77. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +4 -11
  78. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +5 -2
  79. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +21 -48
  80. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.d.ts +8 -0
  81. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.js +20 -0
  82. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +6 -3
  83. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +33 -13
  84. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +7 -4
  85. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +67 -11
  86. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.d.ts +14 -0
  87. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.js +42 -0
  88. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +1 -1
  89. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +7 -7
  90. package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -1
  91. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +9 -9
  92. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +28 -44
  93. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.d.ts +23 -0
  94. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.js +31 -0
  95. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +90 -1
  96. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +145 -23
  97. package/esm/BaseFeatureWidget/configSchema.js +1 -1
  98. package/esm/BaseFeatureWidget/formatDetails.d.ts +38 -0
  99. package/esm/BaseFeatureWidget/formatDetails.js +103 -0
  100. package/esm/BaseFeatureWidget/index.d.ts +3 -1
  101. package/esm/BaseFeatureWidget/index.js +2 -2
  102. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +80 -62
  103. package/esm/BaseFeatureWidget/stateModelFactory.js +128 -29
  104. package/esm/BaseFeatureWidget/types.d.ts +4 -3
  105. package/esm/BaseFeatureWidget/util.d.ts +4 -29
  106. package/esm/BaseFeatureWidget/util.js +20 -84
  107. package/esm/CorePlugin.js +11 -6
  108. package/esm/PhasedScheduler.d.ts +4 -2
  109. package/esm/PhasedScheduler.js +18 -2
  110. package/esm/Plugin.d.ts +6 -1
  111. package/esm/Plugin.js +7 -0
  112. package/esm/PluginLoader.d.ts +41 -40
  113. package/esm/PluginLoader.js +206 -78
  114. package/esm/PluginManager.d.ts +421 -55
  115. package/esm/PluginManager.js +461 -89
  116. package/esm/ReExports/BaseFeatureDetails.js +7 -6
  117. package/esm/ReExports/MuiDataGridReExports.d.ts +2 -2
  118. package/esm/ReExports/MuiDataGridReExports.js +58 -130
  119. package/esm/ReExports/MuiReExports.d.ts +3 -134
  120. package/esm/ReExports/MuiReExports.js +43 -16
  121. package/esm/ReExports/MuiStylesReExports.d.ts +66 -0
  122. package/esm/ReExports/MuiStylesReExports.js +55 -0
  123. package/esm/ReExports/index.js +1 -1
  124. package/esm/ReExports/lazify.d.ts +2 -2
  125. package/esm/ReExports/lazify.js +16 -3
  126. package/esm/ReExports/list.js +54 -229
  127. package/esm/ReExports/modules.js +62 -93
  128. package/esm/ReExports/muiComponentNames.d.ts +18 -0
  129. package/esm/ReExports/muiComponentNames.js +130 -0
  130. package/esm/ReExports/publicUtil.d.ts +1 -0
  131. package/esm/ReExports/publicUtil.js +28 -0
  132. package/esm/ReExports/registry.d.ts +2 -0
  133. package/esm/ReExports/registry.js +28 -0
  134. package/esm/ReExports/sharedModules.d.ts +96 -0
  135. package/esm/ReExports/sharedModules.js +59 -0
  136. package/esm/ReExports/uiStub.d.ts +1 -0
  137. package/esm/ReExports/uiStub.js +13 -0
  138. package/esm/ReExports/workerModules.d.ts +2 -0
  139. package/esm/ReExports/workerModules.js +10 -0
  140. package/esm/TextSearch/BaseResults.d.ts +20 -21
  141. package/esm/TextSearch/BaseResults.js +8 -33
  142. package/esm/TextSearch/TextSearchManager.d.ts +14 -34
  143. package/esm/TextSearch/TextSearchManager.js +87 -34
  144. package/esm/assemblyManager/assembly.d.ts +307 -34
  145. package/esm/assemblyManager/assembly.js +551 -262
  146. package/esm/assemblyManager/assemblyAdapters.d.ts +12 -0
  147. package/esm/assemblyManager/assemblyAdapters.js +18 -0
  148. package/esm/assemblyManager/assemblyConfigSchema.d.ts +192 -17
  149. package/esm/assemblyManager/assemblyConfigSchema.js +213 -19
  150. package/esm/assemblyManager/assemblyManager.d.ts +711 -303
  151. package/esm/assemblyManager/assemblyManager.js +351 -46
  152. package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +32 -0
  153. package/esm/assemblyManager/expandAssemblyConfigShorthand.js +85 -0
  154. package/esm/assemblyManager/geneticCodes.d.ts +21 -0
  155. package/esm/assemblyManager/geneticCodes.js +47 -0
  156. package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +9 -0
  157. package/esm/assemblyManager/getSequenceAdapterConfig.js +12 -0
  158. package/esm/assemblyManager/index.d.ts +1 -1
  159. package/esm/assemblyManager/index.js +2 -2
  160. package/esm/assemblyManager/loadRefNameMap.d.ts +5 -0
  161. package/esm/assemblyManager/loadRefNameMap.js +80 -0
  162. package/esm/assemblyManager/refNameColors.d.ts +1 -0
  163. package/esm/assemblyManager/refNameColors.js +32 -0
  164. package/esm/assemblyManager/refNameMaps.d.ts +26 -0
  165. package/esm/assemblyManager/refNameMaps.js +87 -0
  166. package/esm/assemblyManager/refNameMismatch.d.ts +54 -0
  167. package/esm/assemblyManager/refNameMismatch.js +66 -0
  168. package/esm/checkPlugins.d.ts +11 -0
  169. package/esm/checkPlugins.js +77 -0
  170. package/esm/configuration/configurationSchema.d.ts +122 -20
  171. package/esm/configuration/configurationSchema.js +374 -140
  172. package/esm/configuration/configurationSlot.d.ts +283 -30
  173. package/esm/configuration/configurationSlot.js +205 -226
  174. package/esm/configuration/formatAboutConfigSchema.d.ts +55 -0
  175. package/esm/configuration/formatAboutConfigSchema.js +58 -0
  176. package/esm/configuration/formatDetailsConfigSchema.d.ts +80 -0
  177. package/esm/configuration/formatDetailsConfigSchema.js +90 -0
  178. package/esm/configuration/fullConfSnapshot.d.ts +28 -0
  179. package/esm/configuration/fullConfSnapshot.js +66 -0
  180. package/esm/configuration/getConf.d.ts +88 -0
  181. package/esm/configuration/getConf.js +74 -0
  182. package/esm/configuration/index.d.ts +19 -3
  183. package/esm/configuration/index.js +19 -2
  184. package/esm/configuration/mergeFormatCallbacks.d.ts +15 -0
  185. package/esm/configuration/mergeFormatCallbacks.js +24 -0
  186. package/esm/configuration/promotableDefaults.d.ts +199 -0
  187. package/esm/configuration/promotableDefaults.js +332 -0
  188. package/esm/configuration/promotablePin.d.ts +55 -0
  189. package/esm/configuration/promotableResolve.d.ts +108 -0
  190. package/esm/configuration/promotableResolve.js +117 -0
  191. package/esm/configuration/promotableSlots.d.ts +12 -0
  192. package/esm/configuration/promotableSlots.js +45 -0
  193. package/esm/configuration/readConfObject.d.ts +56 -0
  194. package/esm/configuration/readConfObject.js +161 -0
  195. package/esm/configuration/schemaRegistry.d.ts +35 -0
  196. package/esm/configuration/schemaRegistry.js +50 -0
  197. package/esm/configuration/schemaTypes.d.ts +23 -0
  198. package/esm/configuration/schemaTypes.js +94 -0
  199. package/esm/configuration/slotFacade.d.ts +82 -0
  200. package/esm/configuration/slotFacade.js +89 -0
  201. package/esm/configuration/slotShape.d.ts +12 -0
  202. package/esm/configuration/slotShape.js +84 -0
  203. package/esm/configuration/slotValueUtils.d.ts +17 -0
  204. package/esm/configuration/slotValueUtils.js +25 -0
  205. package/esm/configuration/tabixIndexFields.d.ts +44 -0
  206. package/esm/configuration/tabixIndexFields.js +45 -0
  207. package/esm/configuration/tabixShorthand.d.ts +34 -0
  208. package/esm/configuration/tabixShorthand.js +45 -0
  209. package/esm/configuration/types.d.ts +170 -7
  210. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +24 -10
  211. package/esm/data_adapters/BaseAdapter/BaseAdapter.js +23 -15
  212. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +132 -7
  213. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +136 -25
  214. package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +1 -0
  215. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +13 -5
  216. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +9 -7
  217. package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +2 -1
  218. package/esm/data_adapters/BaseAdapter/CytobandAdapter.d.ts +7 -0
  219. package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +2 -1
  220. package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +29 -0
  221. package/esm/data_adapters/BaseAdapter/featureDensity.js +17 -0
  222. package/esm/data_adapters/BaseAdapter/getAdapterId.d.ts +2 -0
  223. package/esm/data_adapters/BaseAdapter/getAdapterId.js +9 -0
  224. package/esm/data_adapters/BaseAdapter/index.d.ts +7 -4
  225. package/esm/data_adapters/BaseAdapter/index.js +6 -5
  226. package/esm/data_adapters/BaseAdapter/stats.d.ts +37 -5
  227. package/esm/data_adapters/BaseAdapter/stats.js +89 -24
  228. package/esm/data_adapters/BaseAdapter/types.d.ts +11 -8
  229. package/esm/data_adapters/BaseAdapter/types.js +1 -0
  230. package/esm/data_adapters/BaseAdapter/util.d.ts +5 -1
  231. package/esm/data_adapters/BaseAdapter/util.js +14 -3
  232. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +1 -1
  233. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +4 -4
  234. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +36 -4
  235. package/esm/data_adapters/CytobandAdapter/configSchema.js +46 -2
  236. package/esm/data_adapters/CytobandAdapter/index.js +3 -3
  237. package/esm/data_adapters/adapterSessionRefcount.d.ts +61 -0
  238. package/esm/data_adapters/adapterSessionRefcount.js +96 -0
  239. package/esm/data_adapters/dataAdapterCache.d.ts +35 -1
  240. package/esm/data_adapters/dataAdapterCache.js +62 -22
  241. package/esm/data_adapters/getFeatureAdapter.d.ts +22 -0
  242. package/esm/data_adapters/getFeatureAdapter.js +27 -0
  243. package/esm/data_adapters/getSequenceSubAdapter.d.ts +21 -0
  244. package/esm/data_adapters/getSequenceSubAdapter.js +44 -0
  245. package/esm/pluggableElementTypes/AdapterType.d.ts +52 -2
  246. package/esm/pluggableElementTypes/AdapterType.js +44 -5
  247. package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +6 -1
  248. package/esm/pluggableElementTypes/AddTrackWorkflowType.js +3 -1
  249. package/esm/pluggableElementTypes/ConnectionType.d.ts +5 -5
  250. package/esm/pluggableElementTypes/ConnectionType.js +1 -1
  251. package/esm/pluggableElementTypes/DisplayType.d.ts +19 -10
  252. package/esm/pluggableElementTypes/DisplayType.js +53 -5
  253. package/esm/pluggableElementTypes/InternetAccountType.js +1 -1
  254. package/esm/pluggableElementTypes/PluggableElementBase.d.ts +13 -0
  255. package/esm/pluggableElementTypes/PluggableElementBase.js +13 -0
  256. package/esm/pluggableElementTypes/RpcMethodType.d.ts +132 -12
  257. package/esm/pluggableElementTypes/RpcMethodType.js +263 -98
  258. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +19 -9
  259. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +26 -20
  260. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.d.ts +5 -0
  261. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.js +18 -0
  262. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.d.ts +5 -0
  263. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.js +10 -0
  264. package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +3 -3
  265. package/esm/pluggableElementTypes/TextSearchAdapterType.js +3 -1
  266. package/esm/pluggableElementTypes/TrackType.d.ts +2 -1
  267. package/esm/pluggableElementTypes/TrackType.js +1 -1
  268. package/esm/pluggableElementTypes/ViewType.d.ts +27 -3
  269. package/esm/pluggableElementTypes/ViewType.js +84 -4
  270. package/esm/pluggableElementTypes/WidgetType.d.ts +2 -2
  271. package/esm/pluggableElementTypes/WidgetType.js +1 -1
  272. package/esm/pluggableElementTypes/addMenuItems.d.ts +87 -0
  273. package/esm/pluggableElementTypes/addMenuItems.js +82 -0
  274. package/esm/pluggableElementTypes/extendElementType.d.ts +30 -0
  275. package/esm/pluggableElementTypes/extendElementType.js +73 -0
  276. package/esm/pluggableElementTypes/index.d.ts +7 -7
  277. package/esm/pluggableElementTypes/index.js +24 -14
  278. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +70 -15
  279. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +90 -10
  280. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +646 -84
  281. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +241 -60
  282. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +216 -35
  283. package/esm/pluggableElementTypes/models/BaseTrackModel.js +365 -83
  284. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +216 -16
  285. package/esm/pluggableElementTypes/models/BaseViewModel.js +150 -16
  286. package/esm/pluggableElementTypes/models/HighlightsMixin.d.ts +51 -0
  287. package/esm/pluggableElementTypes/models/HighlightsMixin.js +78 -0
  288. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +163 -29
  289. package/esm/pluggableElementTypes/models/InternetAccountModel.js +218 -48
  290. package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +177 -0
  291. package/esm/pluggableElementTypes/models/assertDisplayContract.js +239 -0
  292. package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +22 -8
  293. package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -2
  294. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +39 -20
  295. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +23 -2
  296. package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +181 -65
  297. package/esm/pluggableElementTypes/models/baseTrackConfig.js +191 -89
  298. package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +3 -8
  299. package/esm/pluggableElementTypes/models/components/SaveTrackData.js +113 -139
  300. package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +55 -0
  301. package/esm/pluggableElementTypes/models/components/fetchTrackData.js +83 -0
  302. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +40 -0
  303. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +115 -0
  304. package/esm/pluggableElementTypes/models/index.d.ts +6 -3
  305. package/esm/pluggableElementTypes/models/index.js +10 -8
  306. package/esm/pluggableElementTypes/models/migrateTrackConfig.d.ts +34 -0
  307. package/esm/pluggableElementTypes/models/migrateTrackConfig.js +54 -0
  308. package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +75 -7
  309. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +9 -3
  310. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +153 -103
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  1024. package/esm/util/usePanZoom.d.ts +75 -0
  1025. package/esm/util/usePanZoom.js +175 -0
  1026. package/esm/util/usePanelVirtualScroll.d.ts +37 -0
  1027. package/esm/util/usePanelVirtualScroll.js +42 -0
  1028. package/esm/util/usePointerDrag.d.ts +37 -0
  1029. package/esm/util/usePointerDrag.js +61 -0
  1030. package/esm/util/useRafCommit.d.ts +4 -0
  1031. package/esm/util/useRafCommit.js +50 -0
  1032. package/esm/util/useResizeDrag.d.ts +91 -0
  1033. package/esm/util/useResizeDrag.js +105 -0
  1034. package/esm/util/useRowVirtualScroll.d.ts +32 -0
  1035. package/esm/util/useRowVirtualScroll.js +63 -0
  1036. package/esm/util/useVirtualScrollWheel.d.ts +7 -0
  1037. package/esm/util/useVirtualScrollWheel.js +108 -0
  1038. package/esm/util/viewStatus.d.ts +81 -0
  1039. package/esm/util/viewStatus.js +37 -0
  1040. package/esm/util/virtualRange.d.ts +36 -0
  1041. package/esm/util/virtualRange.js +26 -0
  1042. package/esm/util/webStorage.d.ts +26 -0
  1043. package/esm/util/webStorage.js +92 -0
  1044. package/esm/util/wheelZoom.d.ts +59 -0
  1045. package/esm/util/wheelZoom.js +231 -0
  1046. package/esm/util/whenViewSettled.d.ts +40 -0
  1047. package/esm/util/whenViewSettled.js +41 -0
  1048. package/esm/util/withFeatureDetails.d.ts +34 -0
  1049. package/esm/util/withFeatureDetails.js +59 -0
  1050. package/esm/util/withLaunchInput.d.ts +123 -0
  1051. package/esm/util/withLaunchInput.js +228 -0
  1052. package/package.json +243 -820
  1053. package/esm/ReExports/DataGrid.d.ts +0 -1
  1054. package/esm/ReExports/DataGrid.js +0 -1
  1055. package/esm/configuration/util.d.ts +0 -10
  1056. package/esm/configuration/util.js +0 -123
  1057. package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +0 -18
  1058. package/esm/data_adapters/util.d.ts +0 -1
  1059. package/esm/data_adapters/util.js +0 -6
  1060. package/esm/pluggableElementTypes/GlyphType.d.ts +0 -43
  1061. package/esm/pluggableElementTypes/GlyphType.js +0 -18
  1062. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +0 -5
  1063. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +0 -17
  1064. package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +0 -52
  1065. package/esm/pluggableElementTypes/renderers/BoxRendererType.js +0 -78
  1066. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +0 -4
  1067. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +0 -4
  1068. package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -58
  1069. package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +0 -77
  1070. package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +0 -31
  1071. package/esm/pluggableElementTypes/renderers/LayoutSession.js +0 -40
  1072. package/esm/pluggableElementTypes/renderers/RendererType.d.ts +0 -28
  1073. package/esm/pluggableElementTypes/renderers/RendererType.js +0 -20
  1074. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +0 -58
  1075. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +0 -108
  1076. package/esm/pluggableElementTypes/renderers/index.d.ts +0 -6
  1077. package/esm/pluggableElementTypes/renderers/index.js +0 -6
  1078. package/esm/pluggableElementTypes/renderers/util.d.ts +0 -3
  1079. package/esm/pluggableElementTypes/renderers/util.js +0 -14
  1080. package/esm/rpc/baseRpcConfig.d.ts +0 -8
  1081. package/esm/rpc/baseRpcConfig.js +0 -10
  1082. package/esm/rpc/mainThreadRpcConfig.d.ts +0 -8
  1083. package/esm/rpc/mainThreadRpcConfig.js +0 -8
  1084. package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +0 -17
  1085. package/esm/rpc/methods/CoreGetFeatureDensityStats.js +0 -25
  1086. package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +0 -11
  1087. package/esm/rpc/methods/CoreGetFeatureDetails.js +0 -24
  1088. package/esm/rpc/methods/CoreGetFileInfo.d.ts +0 -9
  1089. package/esm/rpc/methods/CoreGetFileInfo.js +0 -15
  1090. package/esm/rpc/methods/CoreRender.d.ts +0 -14
  1091. package/esm/rpc/methods/CoreRender.js +0 -40
  1092. package/esm/rpc/methods/CoreSaveFeatureData.d.ts +0 -16
  1093. package/esm/rpc/methods/CoreSaveFeatureData.js +0 -32
  1094. package/esm/rpc/methods/util.d.ts +0 -15
  1095. package/esm/rpc/methods/util.js +0 -7
  1096. package/esm/rpc/webWorkerRpcConfig.d.ts +0 -8
  1097. package/esm/rpc/webWorkerRpcConfig.js +0 -8
  1098. package/esm/ui/MenuButton.d.ts +0 -1
  1099. package/esm/ui/MenuButton.js +0 -1
  1100. package/esm/ui/MenuItems.d.ts +0 -15
  1101. package/esm/ui/MenuItems.js +0 -59
  1102. package/esm/ui/useEvent.d.ts +0 -1
  1103. package/esm/ui/useEvent.js +0 -10
  1104. package/esm/util/blobToDataURL.d.ts +0 -1
  1105. package/esm/util/blobToDataURL.js +0 -14
  1106. package/esm/util/compositeMap.d.ts +0 -11
  1107. package/esm/util/compositeMap.js +0 -59
  1108. package/esm/util/flatqueue/index.d.ts +0 -11
  1109. package/esm/util/flatqueue/index.js +0 -61
  1110. package/esm/util/layouts/BaseLayout.d.ts +0 -30
  1111. package/esm/util/layouts/MultiLayout.d.ts +0 -12
  1112. package/esm/util/layouts/MultiLayout.js +0 -40
  1113. package/esm/util/layouts/PileupLayout.d.ts +0 -41
  1114. package/esm/util/layouts/PileupLayout.js +0 -202
  1115. package/esm/util/layouts/PrecomputedLayout.d.ts +0 -30
  1116. package/esm/util/layouts/PrecomputedLayout.js +0 -71
  1117. package/esm/util/layouts/SceneGraph.d.ts +0 -31
  1118. package/esm/util/layouts/SceneGraph.js +0 -121
  1119. package/esm/util/makeAbortableReaction.d.ts +0 -3
  1120. package/esm/util/makeAbortableReaction.js +0 -47
  1121. package/esm/util/map-obj/index.d.ts +0 -13
  1122. package/esm/util/map-obj/index.js +0 -92
  1123. package/esm/util/nextTick.d.ts +0 -1
  1124. package/esm/util/nextTick.js +0 -3
  1125. package/esm/util/offscreenCanvasGetSerializingSvg.d.ts +0 -5
  1126. package/esm/util/offscreenCanvasGetSerializingSvg.js +0 -9
  1127. package/esm/util/offscreenCanvasUtils.d.ts +0 -12
  1128. package/esm/util/offscreenCanvasUtils.js +0 -19
  1129. package/esm/util/renderToAbstractCanvas.d.ts +0 -17
  1130. package/esm/util/renderToAbstractCanvas.js +0 -53
  1131. package/esm/util/transferables.d.ts +0 -2
  1132. package/esm/util/transferables.js +0 -35
  1133. package/esm/util/tss-react/mui/index.d.ts +0 -1
  1134. package/esm/util/tss-react/mui/index.js +0 -1
  1135. package/esm/util/tss-react/mui/mui.d.ts +0 -10
  1136. package/esm/util/tss-react/mui/mui.js +0 -5
  1137. package/esm/util/when.d.ts +0 -1
  1138. package/esm/util/when.js +0 -1
  1139. /package/esm/{data_adapters/BaseAdapter/BaseOptions.js → configuration/promotablePin.js} +0 -0
  1140. /package/esm/{util/layouts/BaseLayout.js → data_adapters/BaseAdapter/CytobandAdapter.js} +0 -0
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/core",
3
- "version": "4.3.0",
3
+ "version": "5.0.0-beta.2",
4
4
  "type": "module",
5
5
  "description": "JBrowse 2 core libraries used by plugins",
6
6
  "keywords": [
@@ -20,497 +20,262 @@
20
20
  },
21
21
  "author": "JBrowse Team",
22
22
  "exports": {
23
- "./BaseFeatureWidget": {
24
- "types": "./esm/BaseFeatureWidget/index.d.ts",
25
- "import": "./esm/BaseFeatureWidget/index.js"
26
- },
27
- "./BaseFeatureWidget/BaseFeatureDetail": {
28
- "types": "./esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts",
29
- "import": "./esm/BaseFeatureWidget/BaseFeatureDetail/index.js"
30
- },
31
- "./BaseFeatureWidget/BaseFeatureDetail/Attributes": {
32
- "types": "./esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts",
33
- "import": "./esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js"
34
- },
35
- "./BaseFeatureWidget/BaseFeatureDetail/BaseCard": {
36
- "types": "./esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts",
37
- "import": "./esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js"
38
- },
39
- "./BaseFeatureWidget/BaseFeatureDetail/FeatureDetails": {
40
- "types": "./esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts",
41
- "import": "./esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js"
42
- },
43
- "./BaseFeatureWidget/BaseFeatureDetail/SimpleField": {
44
- "types": "./esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts",
45
- "import": "./esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js"
46
- },
47
- "./Plugin": {
48
- "types": "./esm/Plugin.d.ts",
49
- "import": "./esm/Plugin.js"
50
- },
51
- "./PluginLoader": {
52
- "types": "./esm/PluginLoader.d.ts",
53
- "import": "./esm/PluginLoader.js"
54
- },
55
- "./PluginManager": {
56
- "types": "./esm/PluginManager.d.ts",
57
- "import": "./esm/PluginManager.js"
58
- },
59
- "./TextSearch/BaseResults": {
60
- "types": "./esm/TextSearch/BaseResults.d.ts",
61
- "import": "./esm/TextSearch/BaseResults.js"
62
- },
63
- "./TextSearch/TextSearchManager": {
64
- "types": "./esm/TextSearch/TextSearchManager.d.ts",
65
- "import": "./esm/TextSearch/TextSearchManager.js"
66
- },
67
- "./assemblyManager": {
68
- "types": "./esm/assemblyManager/index.d.ts",
69
- "import": "./esm/assemblyManager/index.js"
70
- },
71
- "./assemblyManager/assembly": {
72
- "types": "./esm/assemblyManager/assembly.d.ts",
73
- "import": "./esm/assemblyManager/assembly.js"
74
- },
75
- "./assemblyManager/assemblyConfigSchema": {
76
- "types": "./esm/assemblyManager/assemblyConfigSchema.d.ts",
77
- "import": "./esm/assemblyManager/assemblyConfigSchema.js"
78
- },
79
- "./configuration": {
80
- "types": "./esm/configuration/index.d.ts",
81
- "import": "./esm/configuration/index.js"
82
- },
83
- "./data_adapters/BaseAdapter": {
84
- "types": "./esm/data_adapters/BaseAdapter/index.d.ts",
85
- "import": "./esm/data_adapters/BaseAdapter/index.js"
86
- },
87
- "./data_adapters/BaseAdapter/BaseOptions": {
88
- "types": "./esm/data_adapters/BaseAdapter/BaseOptions.d.ts",
89
- "import": "./esm/data_adapters/BaseAdapter/BaseOptions.js"
90
- },
91
- "./data_adapters/BaseAdapter/stats": {
92
- "types": "./esm/data_adapters/BaseAdapter/stats.d.ts",
93
- "import": "./esm/data_adapters/BaseAdapter/stats.js"
94
- },
95
- "./data_adapters/dataAdapterCache": {
96
- "types": "./esm/data_adapters/dataAdapterCache.d.ts",
97
- "import": "./esm/data_adapters/dataAdapterCache.js"
98
- },
99
- "./pluggableElementTypes": {
100
- "types": "./esm/pluggableElementTypes/index.d.ts",
101
- "import": "./esm/pluggableElementTypes/index.js"
102
- },
103
- "./pluggableElementTypes/AdapterType": {
104
- "types": "./esm/pluggableElementTypes/AdapterType.d.ts",
105
- "import": "./esm/pluggableElementTypes/AdapterType.js"
106
- },
107
- "./pluggableElementTypes/ConnectionType": {
108
- "types": "./esm/pluggableElementTypes/ConnectionType.d.ts",
109
- "import": "./esm/pluggableElementTypes/ConnectionType.js"
110
- },
111
- "./pluggableElementTypes/DisplayType": {
112
- "types": "./esm/pluggableElementTypes/DisplayType.d.ts",
113
- "import": "./esm/pluggableElementTypes/DisplayType.js"
114
- },
115
- "./pluggableElementTypes/GlyphType": {
116
- "types": "./esm/pluggableElementTypes/GlyphType.d.ts",
117
- "import": "./esm/pluggableElementTypes/GlyphType.js"
118
- },
119
- "./pluggableElementTypes/InternetAccountType": {
120
- "types": "./esm/pluggableElementTypes/InternetAccountType.d.ts",
121
- "import": "./esm/pluggableElementTypes/InternetAccountType.js"
122
- },
123
- "./pluggableElementTypes/RpcMethodType": {
124
- "types": "./esm/pluggableElementTypes/RpcMethodType.d.ts",
125
- "import": "./esm/pluggableElementTypes/RpcMethodType.js"
126
- },
127
- "./pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions": {
128
- "types": "./esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts",
129
- "import": "./esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js"
130
- },
131
- "./pluggableElementTypes/TextSearchAdapterType": {
132
- "types": "./esm/pluggableElementTypes/TextSearchAdapterType.d.ts",
133
- "import": "./esm/pluggableElementTypes/TextSearchAdapterType.js"
134
- },
135
- "./pluggableElementTypes/TrackType": {
136
- "types": "./esm/pluggableElementTypes/TrackType.d.ts",
137
- "import": "./esm/pluggableElementTypes/TrackType.js"
138
- },
139
- "./pluggableElementTypes/ViewType": {
140
- "types": "./esm/pluggableElementTypes/ViewType.d.ts",
141
- "import": "./esm/pluggableElementTypes/ViewType.js"
142
- },
143
- "./pluggableElementTypes/WidgetType": {
144
- "types": "./esm/pluggableElementTypes/WidgetType.d.ts",
145
- "import": "./esm/pluggableElementTypes/WidgetType.js"
146
- },
147
- "./pluggableElementTypes/models": {
148
- "types": "./esm/pluggableElementTypes/models/index.d.ts",
149
- "import": "./esm/pluggableElementTypes/models/index.js"
150
- },
151
- "./pluggableElementTypes/models/BaseViewModel": {
152
- "types": "./esm/pluggableElementTypes/models/BaseViewModel.d.ts",
153
- "import": "./esm/pluggableElementTypes/models/BaseViewModel.js"
154
- },
155
- "./pluggableElementTypes/models/baseConnectionConfig": {
156
- "types": "./esm/pluggableElementTypes/models/baseConnectionConfig.d.ts",
157
- "import": "./esm/pluggableElementTypes/models/baseConnectionConfig.js"
158
- },
159
- "./pluggableElementTypes/renderers/BoxRendererType": {
160
- "types": "./esm/pluggableElementTypes/renderers/BoxRendererType.d.ts",
161
- "import": "./esm/pluggableElementTypes/renderers/BoxRendererType.js"
162
- },
163
- "./pluggableElementTypes/renderers/CircularChordRendererType": {
164
- "types": "./esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts",
165
- "import": "./esm/pluggableElementTypes/renderers/CircularChordRendererType.js"
166
- },
167
- "./pluggableElementTypes/renderers/FeatureRendererType": {
168
- "types": "./esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts",
169
- "import": "./esm/pluggableElementTypes/renderers/FeatureRendererType.js"
170
- },
171
- "./pluggableElementTypes/renderers/LayoutSession": {
172
- "types": "./esm/pluggableElementTypes/renderers/LayoutSession.d.ts",
173
- "import": "./esm/pluggableElementTypes/renderers/LayoutSession.js"
174
- },
175
- "./pluggableElementTypes/renderers/RendererType": {
176
- "types": "./esm/pluggableElementTypes/renderers/RendererType.d.ts",
177
- "import": "./esm/pluggableElementTypes/renderers/RendererType.js"
178
- },
179
- "./pluggableElementTypes/renderers/ServerSideRendererType": {
180
- "types": "./esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts",
181
- "import": "./esm/pluggableElementTypes/renderers/ServerSideRendererType.js"
182
- },
183
- "./pluggableElementTypes/renderers/util": {
184
- "types": "./esm/pluggableElementTypes/renderers/util.d.ts",
185
- "import": "./esm/pluggableElementTypes/renderers/util.js"
186
- },
187
- "./pluggableElementTypes/renderers/util/serializableFilterChain": {
188
- "types": "./esm/pluggableElementTypes/renderers/util/serializableFilterChain.d.ts",
189
- "import": "./esm/pluggableElementTypes/renderers/util/serializableFilterChain.js"
190
- },
191
- "./rpc/RpcManager": {
192
- "types": "./esm/rpc/RpcManager.d.ts",
193
- "import": "./esm/rpc/RpcManager.js"
194
- },
195
- "./rpc/coreRpcMethods": {
196
- "types": "./esm/rpc/coreRpcMethods.d.ts",
197
- "import": "./esm/rpc/coreRpcMethods.js"
198
- },
199
- "./rpc/methods/util": {
200
- "types": "./esm/rpc/methods/util.d.ts",
201
- "import": "./esm/rpc/methods/util.js"
202
- },
203
- "./ui": {
204
- "types": "./esm/ui/index.d.ts",
205
- "import": "./esm/ui/index.js"
206
- },
207
- "./ui/AppLogo": {
208
- "types": "./esm/ui/AppLogo.d.ts",
209
- "import": "./esm/ui/AppLogo.js"
210
- },
211
- "./ui/BaseTooltip": {
212
- "types": "./esm/ui/BaseTooltip.d.ts",
213
- "import": "./esm/ui/BaseTooltip.js"
214
- },
215
- "./ui/CascadingMenuButton": {
216
- "types": "./esm/ui/CascadingMenuButton.d.ts",
217
- "import": "./esm/ui/CascadingMenuButton.js"
218
- },
219
- "./ui/ColorPicker": {
220
- "types": "./esm/ui/ColorPicker.d.ts",
221
- "import": "./esm/ui/ColorPicker.js"
222
- },
223
- "./ui/ConfirmDialog": {
224
- "types": "./esm/ui/ConfirmDialog.d.ts",
225
- "import": "./esm/ui/ConfirmDialog.js"
226
- },
227
- "./ui/DataGridFlexContainer": {
228
- "types": "./esm/ui/DataGridFlexContainer.d.ts",
229
- "import": "./esm/ui/DataGridFlexContainer.js"
230
- },
231
- "./ui/Dialog": {
232
- "types": "./esm/ui/Dialog.d.ts",
233
- "import": "./esm/ui/Dialog.js"
234
- },
235
- "./ui/DraggableDialog": {
236
- "types": "./esm/ui/DraggableDialog.d.ts",
237
- "import": "./esm/ui/DraggableDialog.js"
238
- },
239
- "./ui/DropDownMenu": {
240
- "types": "./esm/ui/DropDownMenu.d.ts",
241
- "import": "./esm/ui/DropDownMenu.js"
242
- },
243
- "./ui/EditableTypography": {
244
- "types": "./esm/ui/EditableTypography.d.ts",
245
- "import": "./esm/ui/EditableTypography.js"
246
- },
247
- "./ui/ErrorBoundary": {
248
- "types": "./esm/ui/ErrorBoundary.d.ts",
249
- "import": "./esm/ui/ErrorBoundary.js"
250
- },
251
- "./ui/ErrorMessage": {
252
- "types": "./esm/ui/ErrorMessage.d.ts",
253
- "import": "./esm/ui/ErrorMessage.js"
254
- },
255
- "./ui/ErrorMessageStackTraceDialog": {
256
- "types": "./esm/ui/ErrorMessageStackTraceDialog.d.ts",
257
- "import": "./esm/ui/ErrorMessageStackTraceDialog.js"
258
- },
259
- "./ui/Icons": {
260
- "types": "./esm/ui/Icons.d.ts",
261
- "import": "./esm/ui/Icons.js"
262
- },
263
- "./ui/LoadingEllipses": {
264
- "types": "./esm/ui/LoadingEllipses.d.ts",
265
- "import": "./esm/ui/LoadingEllipses.js"
266
- },
267
- "./ui/Logo": {
268
- "types": "./esm/ui/Logo.d.ts",
269
- "import": "./esm/ui/Logo.js"
270
- },
271
- "./ui/Menu": {
272
- "types": "./esm/ui/Menu.d.ts",
273
- "import": "./esm/ui/Menu.js"
274
- },
275
- "./ui/ResizeHandle": {
276
- "types": "./esm/ui/ResizeHandle.d.ts",
277
- "import": "./esm/ui/ResizeHandle.js"
278
- },
279
- "./ui/SanitizedHTML": {
280
- "types": "./esm/ui/SanitizedHTML.d.ts",
281
- "import": "./esm/ui/SanitizedHTML.js"
282
- },
283
- "./ui/Snackbar": {
284
- "types": "./esm/ui/Snackbar.d.ts",
285
- "import": "./esm/ui/Snackbar.js"
286
- },
287
- "./ui/SnackbarModel": {
288
- "types": "./esm/ui/SnackbarModel.d.ts",
289
- "import": "./esm/ui/SnackbarModel.js"
290
- },
291
- "./ui/colors": {
292
- "types": "./esm/ui/colors.d.ts",
293
- "import": "./esm/ui/colors.js"
294
- },
295
- "./ui/theme": {
296
- "types": "./esm/ui/theme.d.ts",
297
- "import": "./esm/ui/theme.js"
298
- },
299
- "./util": {
300
- "types": "./esm/util/index.d.ts",
301
- "import": "./esm/util/index.js"
302
- },
303
- "./util/Base1DUtils": {
304
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306
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308
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312
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313
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314
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315
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316
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320
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321
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324
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325
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326
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328
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329
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330
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332
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336
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337
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340
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344
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348
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349
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350
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352
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353
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354
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356
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357
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358
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361
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364
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365
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369
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373
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376
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381
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382
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384
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385
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388
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397
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398
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399
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401
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402
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405
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410
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414
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416
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421
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424
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425
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428
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429
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430
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436
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134
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137
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161
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171
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179
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181
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+ "./util/types": "./esm/util/types/index.js",
225
+ "./util/types/data": "./esm/util/types/data.js",
226
+ "./util/types/mst": "./esm/util/types/mst.js",
227
+ "./util/unzip": "./esm/util/unzip.js",
228
+ "./util/useEventCallback": "./esm/util/useEventCallback.js",
229
+ "./util/useFetch": "./esm/util/useFetch.js",
230
+ "./util/useFetchPlugins": "./esm/util/useFetchPlugins.js",
231
+ "./util/useMeasure": "./esm/util/useMeasure.js",
232
+ "./util/usePanZoom": "./esm/util/usePanZoom.js",
233
+ "./util/usePanelVirtualScroll": "./esm/util/usePanelVirtualScroll.js",
234
+ "./util/usePointerDrag": "./esm/util/usePointerDrag.js",
235
+ "./util/useResizeDrag": "./esm/util/useResizeDrag.js",
236
+ "./util/useRowVirtualScroll": "./esm/util/useRowVirtualScroll.js",
237
+ "./util/viewStatus": "./esm/util/viewStatus.js",
238
+ "./util/virtualRange": "./esm/util/virtualRange.js",
239
+ "./util/wheelZoom": "./esm/util/wheelZoom.js",
240
+ "./util/whenViewSettled": "./esm/util/whenViewSettled.js",
241
+ "./util/withLaunchInput": "./esm/util/withLaunchInput.js"
471
242
  },
472
243
  "files": [
473
244
  "esm"
474
245
  ],
475
246
  "dependencies": {
247
+ "@emotion/cache": "^11.14.0",
476
248
  "@emotion/react": "^11.14.0",
477
249
  "@emotion/serialize": "^1.3.3",
478
250
  "@emotion/utils": "^1.4.2",
479
- "@floating-ui/react": "^0.27.19",
480
- "@gmod/abortable-promise-cache": "^3.0.4",
481
- "@gmod/bgzf-filehandle": "^6.0.19",
482
- "@gmod/http-range-fetcher": "^5.0.7",
483
- "@jbrowse/jexl": "^3.0.2",
484
- "@jbrowse/mobx-state-tree": "^5.6.0",
251
+ "@floating-ui/react": "^0.27.20",
252
+ "@gmod/bgzf-filehandle": "^6.6.0",
253
+ "@gmod/range-cache-filehandle": "^1.4.0",
254
+ "@gmod/shared-read-cache": "^1.7.2",
255
+ "@jbrowse/jexl": "^4.0.1",
256
+ "@jbrowse/mobx-state-tree": "^6.5.1",
485
257
  "@jbrowse/quick-lru": "^7.3.5",
486
258
  "@leeoniya/ufuzzy": "^1.0.19",
487
- "@mui/icons-material": "^7.3.11",
488
- "@mui/material": "^7.3.11",
489
- "@mui/system": "^7.3.11",
490
- "@mui/types": "^7.4.12",
491
- "@mui/x-data-grid": "^8.28.2",
492
- "@types/file-saver-es": "^2.0.3",
259
+ "@mui/icons-material": "^9.4.0",
260
+ "@mui/material": "^9.4.0",
261
+ "@mui/system": "^9.4.0",
262
+ "@mui/x-data-grid": "^9.12.0",
493
263
  "canvas-sequencer-ts": "^3.1.3",
494
- "canvas2svg": "^1.0.16",
495
- "copy-to-clipboard": "^3.3.3",
496
- "deepmerge": "^4.3.1",
497
- "detect-node": "^2.1.0",
498
- "dompurify": "^3.4.2",
499
- "escape-html": "^1.0.3",
500
- "fast-deep-equal": "^3.1.3",
501
- "file-saver-es": "^2.0.5",
502
- "generic-filehandle2": "^2.1.7",
264
+ "compare-versions": "^6.1.1",
265
+ "dompurify": "^3.4.14",
266
+ "generic-filehandle2": "^2.4.0",
503
267
  "idb": "^8.0.3",
504
- "librpc-web-mod": "^2.1.1",
505
- "mobx": "^6.15.3",
506
- "mobx-react": "^9.2.1",
507
- "react-draggable": "^4.5.0",
268
+ "mobx": "^7.0.3",
269
+ "mobx-react": "^10.0.2",
270
+ "pako-esm2": "^2.0.2",
508
271
  "rxjs": "^7.8.2",
509
- "source-map-js": "^1.2.1"
272
+ "source-map-js": "^1.2.1",
273
+ "@jbrowse/add-track-core": "^5.0.0-beta.2",
274
+ "@jbrowse/render-core": "^5.0.0-beta.2"
510
275
  },
511
276
  "peerDependencies": {
512
- "react": ">=18.0.0",
513
- "react-dom": ">=18.0.0"
277
+ "react": ">=19.0.0",
278
+ "react-dom": ">=19.0.0"
514
279
  },
515
280
  "publishConfig": {
516
281
  "access": "public"
@@ -518,353 +283,11 @@
518
283
  "sideEffects": false,
519
284
  "scripts": {
520
285
  "test": "cd ../..; jest --passWithNoTests packages/core",
521
- "storybook": "storybook dev --port 6006",
522
- "storybook:build": "storybook build",
523
286
  "coverage": "pnpm test --coverage",
524
287
  "clean": "rimraf esm *.tsbuildinfo",
525
288
  "prebuild": "pnpm clean",
526
289
  "generate:exports": "node scripts/generateExports.mjs",
527
- "build:esm": "tsc -p tsconfig.build.esm.json",
290
+ "build:esm": "node ../../node_modules/typescript7/bin/tsc --build tsconfig.build.esm.json",
528
291
  "build": "pnpm build:esm"
529
- },
530
- "typesVersions": {
531
- "*": {
532
- "BaseFeatureWidget": [
533
- "esm/BaseFeatureWidget/index.d.ts"
534
- ],
535
- "BaseFeatureWidget/BaseFeatureDetail": [
536
- "esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts"
537
- ],
538
- "BaseFeatureWidget/BaseFeatureDetail/Attributes": [
539
- "esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts"
540
- ],
541
- "BaseFeatureWidget/BaseFeatureDetail/BaseCard": [
542
- "esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts"
543
- ],
544
- "BaseFeatureWidget/BaseFeatureDetail/FeatureDetails": [
545
- "esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts"
546
- ],
547
- "BaseFeatureWidget/BaseFeatureDetail/SimpleField": [
548
- "esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts"
549
- ],
550
- "Plugin": [
551
- "esm/Plugin.d.ts"
552
- ],
553
- "PluginLoader": [
554
- "esm/PluginLoader.d.ts"
555
- ],
556
- "PluginManager": [
557
- "esm/PluginManager.d.ts"
558
- ],
559
- "TextSearch/BaseResults": [
560
- "esm/TextSearch/BaseResults.d.ts"
561
- ],
562
- "TextSearch/TextSearchManager": [
563
- "esm/TextSearch/TextSearchManager.d.ts"
564
- ],
565
- "assemblyManager": [
566
- "esm/assemblyManager/index.d.ts"
567
- ],
568
- "assemblyManager/assembly": [
569
- "esm/assemblyManager/assembly.d.ts"
570
- ],
571
- "assemblyManager/assemblyConfigSchema": [
572
- "esm/assemblyManager/assemblyConfigSchema.d.ts"
573
- ],
574
- "configuration": [
575
- "esm/configuration/index.d.ts"
576
- ],
577
- "data_adapters/BaseAdapter": [
578
- "esm/data_adapters/BaseAdapter/index.d.ts"
579
- ],
580
- "data_adapters/BaseAdapter/BaseOptions": [
581
- "esm/data_adapters/BaseAdapter/BaseOptions.d.ts"
582
- ],
583
- "data_adapters/BaseAdapter/stats": [
584
- "esm/data_adapters/BaseAdapter/stats.d.ts"
585
- ],
586
- "data_adapters/dataAdapterCache": [
587
- "esm/data_adapters/dataAdapterCache.d.ts"
588
- ],
589
- "pluggableElementTypes": [
590
- "esm/pluggableElementTypes/index.d.ts"
591
- ],
592
- "pluggableElementTypes/AdapterType": [
593
- "esm/pluggableElementTypes/AdapterType.d.ts"
594
- ],
595
- "pluggableElementTypes/ConnectionType": [
596
- "esm/pluggableElementTypes/ConnectionType.d.ts"
597
- ],
598
- "pluggableElementTypes/DisplayType": [
599
- "esm/pluggableElementTypes/DisplayType.d.ts"
600
- ],
601
- "pluggableElementTypes/GlyphType": [
602
- "esm/pluggableElementTypes/GlyphType.d.ts"
603
- ],
604
- "pluggableElementTypes/InternetAccountType": [
605
- "esm/pluggableElementTypes/InternetAccountType.d.ts"
606
- ],
607
- "pluggableElementTypes/RpcMethodType": [
608
- "esm/pluggableElementTypes/RpcMethodType.d.ts"
609
- ],
610
- "pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions": [
611
- "esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts"
612
- ],
613
- "pluggableElementTypes/TextSearchAdapterType": [
614
- "esm/pluggableElementTypes/TextSearchAdapterType.d.ts"
615
- ],
616
- "pluggableElementTypes/TrackType": [
617
- "esm/pluggableElementTypes/TrackType.d.ts"
618
- ],
619
- "pluggableElementTypes/ViewType": [
620
- "esm/pluggableElementTypes/ViewType.d.ts"
621
- ],
622
- "pluggableElementTypes/WidgetType": [
623
- "esm/pluggableElementTypes/WidgetType.d.ts"
624
- ],
625
- "pluggableElementTypes/models": [
626
- "esm/pluggableElementTypes/models/index.d.ts"
627
- ],
628
- "pluggableElementTypes/models/BaseViewModel": [
629
- "esm/pluggableElementTypes/models/BaseViewModel.d.ts"
630
- ],
631
- "pluggableElementTypes/models/baseConnectionConfig": [
632
- "esm/pluggableElementTypes/models/baseConnectionConfig.d.ts"
633
- ],
634
- "pluggableElementTypes/renderers/BoxRendererType": [
635
- "esm/pluggableElementTypes/renderers/BoxRendererType.d.ts"
636
- ],
637
- "pluggableElementTypes/renderers/CircularChordRendererType": [
638
- "esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts"
639
- ],
640
- "pluggableElementTypes/renderers/FeatureRendererType": [
641
- "esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts"
642
- ],
643
- "pluggableElementTypes/renderers/LayoutSession": [
644
- "esm/pluggableElementTypes/renderers/LayoutSession.d.ts"
645
- ],
646
- "pluggableElementTypes/renderers/RendererType": [
647
- "esm/pluggableElementTypes/renderers/RendererType.d.ts"
648
- ],
649
- "pluggableElementTypes/renderers/ServerSideRendererType": [
650
- "esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts"
651
- ],
652
- "pluggableElementTypes/renderers/util": [
653
- "esm/pluggableElementTypes/renderers/util.d.ts"
654
- ],
655
- "pluggableElementTypes/renderers/util/serializableFilterChain": [
656
- "esm/pluggableElementTypes/renderers/util/serializableFilterChain.d.ts"
657
- ],
658
- "rpc/RpcManager": [
659
- "esm/rpc/RpcManager.d.ts"
660
- ],
661
- "rpc/coreRpcMethods": [
662
- "esm/rpc/coreRpcMethods.d.ts"
663
- ],
664
- "rpc/methods/util": [
665
- "esm/rpc/methods/util.d.ts"
666
- ],
667
- "ui": [
668
- "esm/ui/index.d.ts"
669
- ],
670
- "ui/AppLogo": [
671
- "esm/ui/AppLogo.d.ts"
672
- ],
673
- "ui/BaseTooltip": [
674
- "esm/ui/BaseTooltip.d.ts"
675
- ],
676
- "ui/CascadingMenuButton": [
677
- "esm/ui/CascadingMenuButton.d.ts"
678
- ],
679
- "ui/ColorPicker": [
680
- "esm/ui/ColorPicker.d.ts"
681
- ],
682
- "ui/ConfirmDialog": [
683
- "esm/ui/ConfirmDialog.d.ts"
684
- ],
685
- "ui/DataGridFlexContainer": [
686
- "esm/ui/DataGridFlexContainer.d.ts"
687
- ],
688
- "ui/Dialog": [
689
- "esm/ui/Dialog.d.ts"
690
- ],
691
- "ui/DraggableDialog": [
692
- "esm/ui/DraggableDialog.d.ts"
693
- ],
694
- "ui/DropDownMenu": [
695
- "esm/ui/DropDownMenu.d.ts"
696
- ],
697
- "ui/EditableTypography": [
698
- "esm/ui/EditableTypography.d.ts"
699
- ],
700
- "ui/ErrorBoundary": [
701
- "esm/ui/ErrorBoundary.d.ts"
702
- ],
703
- "ui/ErrorMessage": [
704
- "esm/ui/ErrorMessage.d.ts"
705
- ],
706
- "ui/ErrorMessageStackTraceDialog": [
707
- "esm/ui/ErrorMessageStackTraceDialog.d.ts"
708
- ],
709
- "ui/Icons": [
710
- "esm/ui/Icons.d.ts"
711
- ],
712
- "ui/LoadingEllipses": [
713
- "esm/ui/LoadingEllipses.d.ts"
714
- ],
715
- "ui/Logo": [
716
- "esm/ui/Logo.d.ts"
717
- ],
718
- "ui/Menu": [
719
- "esm/ui/Menu.d.ts"
720
- ],
721
- "ui/ResizeHandle": [
722
- "esm/ui/ResizeHandle.d.ts"
723
- ],
724
- "ui/SanitizedHTML": [
725
- "esm/ui/SanitizedHTML.d.ts"
726
- ],
727
- "ui/Snackbar": [
728
- "esm/ui/Snackbar.d.ts"
729
- ],
730
- "ui/SnackbarModel": [
731
- "esm/ui/SnackbarModel.d.ts"
732
- ],
733
- "ui/colors": [
734
- "esm/ui/colors.d.ts"
735
- ],
736
- "ui/theme": [
737
- "esm/ui/theme.d.ts"
738
- ],
739
- "util": [
740
- "esm/util/index.d.ts"
741
- ],
742
- "util/Base1DUtils": [
743
- "esm/util/Base1DUtils.d.ts"
744
- ],
745
- "util/Base1DViewModel": [
746
- "esm/util/Base1DViewModel.d.ts"
747
- ],
748
- "util/QuickLRU": [
749
- "esm/util/QuickLRU/index.d.ts"
750
- ],
751
- "util/TimeTraveller": [
752
- "esm/util/TimeTraveller.d.ts"
753
- ],
754
- "util/aborting": [
755
- "esm/util/aborting.d.ts"
756
- ],
757
- "util/analytics": [
758
- "esm/util/analytics.d.ts"
759
- ],
760
- "util/blockTypes": [
761
- "esm/util/blockTypes.d.ts"
762
- ],
763
- "util/calculateDynamicBlocks": [
764
- "esm/util/calculateDynamicBlocks.d.ts"
765
- ],
766
- "util/calculateStaticBlocks": [
767
- "esm/util/calculateStaticBlocks.d.ts"
768
- ],
769
- "util/color": [
770
- "esm/util/color/index.d.ts"
771
- ],
772
- "util/colord": [
773
- "esm/util/colord.d.ts"
774
- ],
775
- "util/compositeMap": [
776
- "esm/util/compositeMap.d.ts"
777
- ],
778
- "util/convertCodingSequenceToPeptides": [
779
- "esm/util/convertCodingSequenceToPeptides.d.ts"
780
- ],
781
- "util/flatbush": [
782
- "esm/util/flatbush/index.d.ts"
783
- ],
784
- "util/formatFastaStrings": [
785
- "esm/util/formatFastaStrings.d.ts"
786
- ],
787
- "util/io": [
788
- "esm/util/io/index.d.ts"
789
- ],
790
- "util/io/RemoteFileWithRangeCache": [
791
- "esm/util/io/RemoteFileWithRangeCache.d.ts"
792
- ],
793
- "util/jexlStrings": [
794
- "esm/util/jexlStrings.d.ts"
795
- ],
796
- "util/layouts": [
797
- "esm/util/layouts/index.d.ts"
798
- ],
799
- "util/layouts/BaseLayout": [
800
- "esm/util/layouts/BaseLayout.d.ts"
801
- ],
802
- "util/layouts/GranularRectLayout": [
803
- "esm/util/layouts/GranularRectLayout.d.ts"
804
- ],
805
- "util/librpc": [
806
- "esm/util/librpc.d.ts"
807
- ],
808
- "util/mst-reflection": [
809
- "esm/util/mst-reflection.d.ts"
810
- ],
811
- "util/offscreenCanvasPonyfill": [
812
- "esm/util/offscreenCanvasPonyfill.d.ts"
813
- ],
814
- "util/offscreenCanvasUtils": [
815
- "esm/util/offscreenCanvasUtils.d.ts"
816
- ],
817
- "util/parseLineByLine": [
818
- "esm/util/parseLineByLine.d.ts"
819
- ],
820
- "util/range": [
821
- "esm/util/range.d.ts"
822
- ],
823
- "util/rxjs": [
824
- "esm/util/rxjs.d.ts"
825
- ],
826
- "util/simpleFeature": [
827
- "esm/util/simpleFeature.d.ts"
828
- ],
829
- "util/stats": [
830
- "esm/util/stats.d.ts"
831
- ],
832
- "util/stopToken": [
833
- "esm/util/stopToken.d.ts"
834
- ],
835
- "util/tracks": [
836
- "esm/util/tracks.d.ts"
837
- ],
838
- "util/tss-react": [
839
- "esm/util/tss-react/index.d.ts"
840
- ],
841
- "util/types": [
842
- "esm/util/types/index.d.ts"
843
- ],
844
- "util/types/mst": [
845
- "esm/util/types/mst.d.ts"
846
- ],
847
- "util/useMeasure": [
848
- "esm/util/useMeasure.d.ts"
849
- ],
850
- "ui/ReturnToImportFormDialog": [
851
- "esm/ui/ReturnToImportFormDialog.d.ts"
852
- ],
853
- "util/nanoid": [
854
- "esm/util/nanoid.d.ts"
855
- ],
856
- "ReExports/list": [
857
- "esm/ReExports/list.d.ts"
858
- ],
859
- "util/fileHandleStore": [
860
- "esm/util/fileHandleStore.d.ts"
861
- ],
862
- "util/tss-react/types": [
863
- "esm/util/tss-react/types.d.ts"
864
- ],
865
- "configuration/configurationSchema": [
866
- "esm/configuration/configurationSchema.d.ts"
867
- ]
868
- }
869
292
  }
870
293
  }