@jbrowse/core 4.3.0 → 5.0.0-beta.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1140) hide show
  1. package/README.md +822 -0
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +13 -3
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +33 -22
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +8 -3
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +117 -19
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -8
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -4
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -1
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -2
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +1 -1
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -4
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +1 -1
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +12 -5
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +28 -17
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -1
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -40
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +6 -4
  19. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +46 -30
  20. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +20 -0
  21. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +66 -0
  22. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -1
  23. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -2
  24. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -0
  25. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +17 -0
  26. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +1 -1
  27. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +3 -9
  28. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +3 -2
  29. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +3 -3
  30. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
  31. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +7 -14
  32. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +2 -1
  33. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +19 -13
  34. package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +5 -4
  35. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +8 -1
  36. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +32 -10
  37. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +18 -0
  38. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +10 -0
  39. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +7 -4
  40. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +62 -24
  41. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +10 -5
  42. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +64 -41
  43. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +1 -1
  44. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +17 -8
  45. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +6 -0
  46. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +19 -0
  47. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +5 -4
  48. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +15 -18
  49. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +1 -1
  50. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +33 -17
  51. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +3 -3
  52. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +7 -3
  53. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +11 -0
  54. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +29 -0
  55. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -1
  56. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -6
  57. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +18 -6
  58. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +11 -29
  59. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +9 -2
  60. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +63 -58
  61. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +7 -3
  62. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +38 -51
  63. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -1
  64. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +19 -27
  65. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +6 -0
  66. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +18 -0
  67. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +12 -0
  68. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +97 -0
  69. package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -1
  70. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +50 -63
  71. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +62 -59
  72. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.d.ts +21 -0
  73. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.js +24 -0
  74. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +5 -3
  75. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +93 -75
  76. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -1
  77. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +4 -11
  78. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +5 -2
  79. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +21 -48
  80. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.d.ts +8 -0
  81. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.js +20 -0
  82. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +6 -3
  83. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +33 -13
  84. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +7 -4
  85. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +67 -11
  86. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.d.ts +14 -0
  87. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.js +42 -0
  88. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +1 -1
  89. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +7 -7
  90. package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -1
  91. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +9 -9
  92. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +28 -44
  93. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.d.ts +23 -0
  94. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.js +31 -0
  95. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +90 -1
  96. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +145 -23
  97. package/esm/BaseFeatureWidget/configSchema.js +1 -1
  98. package/esm/BaseFeatureWidget/formatDetails.d.ts +38 -0
  99. package/esm/BaseFeatureWidget/formatDetails.js +103 -0
  100. package/esm/BaseFeatureWidget/index.d.ts +3 -1
  101. package/esm/BaseFeatureWidget/index.js +2 -2
  102. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +80 -62
  103. package/esm/BaseFeatureWidget/stateModelFactory.js +128 -29
  104. package/esm/BaseFeatureWidget/types.d.ts +4 -3
  105. package/esm/BaseFeatureWidget/util.d.ts +4 -29
  106. package/esm/BaseFeatureWidget/util.js +20 -84
  107. package/esm/CorePlugin.js +11 -6
  108. package/esm/PhasedScheduler.d.ts +4 -2
  109. package/esm/PhasedScheduler.js +18 -2
  110. package/esm/Plugin.d.ts +6 -1
  111. package/esm/Plugin.js +7 -0
  112. package/esm/PluginLoader.d.ts +41 -40
  113. package/esm/PluginLoader.js +206 -78
  114. package/esm/PluginManager.d.ts +421 -55
  115. package/esm/PluginManager.js +461 -89
  116. package/esm/ReExports/BaseFeatureDetails.js +7 -6
  117. package/esm/ReExports/MuiDataGridReExports.d.ts +2 -2
  118. package/esm/ReExports/MuiDataGridReExports.js +58 -130
  119. package/esm/ReExports/MuiReExports.d.ts +3 -134
  120. package/esm/ReExports/MuiReExports.js +43 -16
  121. package/esm/ReExports/MuiStylesReExports.d.ts +66 -0
  122. package/esm/ReExports/MuiStylesReExports.js +55 -0
  123. package/esm/ReExports/index.js +1 -1
  124. package/esm/ReExports/lazify.d.ts +2 -2
  125. package/esm/ReExports/lazify.js +16 -3
  126. package/esm/ReExports/list.js +54 -229
  127. package/esm/ReExports/modules.js +62 -93
  128. package/esm/ReExports/muiComponentNames.d.ts +18 -0
  129. package/esm/ReExports/muiComponentNames.js +130 -0
  130. package/esm/ReExports/publicUtil.d.ts +1 -0
  131. package/esm/ReExports/publicUtil.js +28 -0
  132. package/esm/ReExports/registry.d.ts +2 -0
  133. package/esm/ReExports/registry.js +28 -0
  134. package/esm/ReExports/sharedModules.d.ts +96 -0
  135. package/esm/ReExports/sharedModules.js +59 -0
  136. package/esm/ReExports/uiStub.d.ts +1 -0
  137. package/esm/ReExports/uiStub.js +13 -0
  138. package/esm/ReExports/workerModules.d.ts +2 -0
  139. package/esm/ReExports/workerModules.js +10 -0
  140. package/esm/TextSearch/BaseResults.d.ts +20 -21
  141. package/esm/TextSearch/BaseResults.js +8 -33
  142. package/esm/TextSearch/TextSearchManager.d.ts +14 -34
  143. package/esm/TextSearch/TextSearchManager.js +87 -34
  144. package/esm/assemblyManager/assembly.d.ts +307 -34
  145. package/esm/assemblyManager/assembly.js +551 -262
  146. package/esm/assemblyManager/assemblyAdapters.d.ts +12 -0
  147. package/esm/assemblyManager/assemblyAdapters.js +18 -0
  148. package/esm/assemblyManager/assemblyConfigSchema.d.ts +192 -17
  149. package/esm/assemblyManager/assemblyConfigSchema.js +213 -19
  150. package/esm/assemblyManager/assemblyManager.d.ts +711 -303
  151. package/esm/assemblyManager/assemblyManager.js +351 -46
  152. package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +32 -0
  153. package/esm/assemblyManager/expandAssemblyConfigShorthand.js +85 -0
  154. package/esm/assemblyManager/geneticCodes.d.ts +21 -0
  155. package/esm/assemblyManager/geneticCodes.js +47 -0
  156. package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +9 -0
  157. package/esm/assemblyManager/getSequenceAdapterConfig.js +12 -0
  158. package/esm/assemblyManager/index.d.ts +1 -1
  159. package/esm/assemblyManager/index.js +2 -2
  160. package/esm/assemblyManager/loadRefNameMap.d.ts +5 -0
  161. package/esm/assemblyManager/loadRefNameMap.js +80 -0
  162. package/esm/assemblyManager/refNameColors.d.ts +1 -0
  163. package/esm/assemblyManager/refNameColors.js +32 -0
  164. package/esm/assemblyManager/refNameMaps.d.ts +26 -0
  165. package/esm/assemblyManager/refNameMaps.js +87 -0
  166. package/esm/assemblyManager/refNameMismatch.d.ts +54 -0
  167. package/esm/assemblyManager/refNameMismatch.js +66 -0
  168. package/esm/checkPlugins.d.ts +11 -0
  169. package/esm/checkPlugins.js +77 -0
  170. package/esm/configuration/configurationSchema.d.ts +122 -20
  171. package/esm/configuration/configurationSchema.js +374 -140
  172. package/esm/configuration/configurationSlot.d.ts +283 -30
  173. package/esm/configuration/configurationSlot.js +205 -226
  174. package/esm/configuration/formatAboutConfigSchema.d.ts +55 -0
  175. package/esm/configuration/formatAboutConfigSchema.js +58 -0
  176. package/esm/configuration/formatDetailsConfigSchema.d.ts +80 -0
  177. package/esm/configuration/formatDetailsConfigSchema.js +90 -0
  178. package/esm/configuration/fullConfSnapshot.d.ts +28 -0
  179. package/esm/configuration/fullConfSnapshot.js +66 -0
  180. package/esm/configuration/getConf.d.ts +88 -0
  181. package/esm/configuration/getConf.js +74 -0
  182. package/esm/configuration/index.d.ts +19 -3
  183. package/esm/configuration/index.js +19 -2
  184. package/esm/configuration/mergeFormatCallbacks.d.ts +15 -0
  185. package/esm/configuration/mergeFormatCallbacks.js +24 -0
  186. package/esm/configuration/promotableDefaults.d.ts +199 -0
  187. package/esm/configuration/promotableDefaults.js +332 -0
  188. package/esm/configuration/promotablePin.d.ts +55 -0
  189. package/esm/configuration/promotableResolve.d.ts +108 -0
  190. package/esm/configuration/promotableResolve.js +117 -0
  191. package/esm/configuration/promotableSlots.d.ts +12 -0
  192. package/esm/configuration/promotableSlots.js +45 -0
  193. package/esm/configuration/readConfObject.d.ts +56 -0
  194. package/esm/configuration/readConfObject.js +161 -0
  195. package/esm/configuration/schemaRegistry.d.ts +35 -0
  196. package/esm/configuration/schemaRegistry.js +50 -0
  197. package/esm/configuration/schemaTypes.d.ts +23 -0
  198. package/esm/configuration/schemaTypes.js +94 -0
  199. package/esm/configuration/slotFacade.d.ts +82 -0
  200. package/esm/configuration/slotFacade.js +89 -0
  201. package/esm/configuration/slotShape.d.ts +12 -0
  202. package/esm/configuration/slotShape.js +84 -0
  203. package/esm/configuration/slotValueUtils.d.ts +17 -0
  204. package/esm/configuration/slotValueUtils.js +25 -0
  205. package/esm/configuration/tabixIndexFields.d.ts +44 -0
  206. package/esm/configuration/tabixIndexFields.js +45 -0
  207. package/esm/configuration/tabixShorthand.d.ts +34 -0
  208. package/esm/configuration/tabixShorthand.js +45 -0
  209. package/esm/configuration/types.d.ts +170 -7
  210. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +24 -10
  211. package/esm/data_adapters/BaseAdapter/BaseAdapter.js +23 -15
  212. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +132 -7
  213. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +136 -25
  214. package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +1 -0
  215. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +13 -5
  216. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +9 -7
  217. package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +2 -1
  218. package/esm/data_adapters/BaseAdapter/CytobandAdapter.d.ts +7 -0
  219. package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +2 -1
  220. package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +29 -0
  221. package/esm/data_adapters/BaseAdapter/featureDensity.js +17 -0
  222. package/esm/data_adapters/BaseAdapter/getAdapterId.d.ts +2 -0
  223. package/esm/data_adapters/BaseAdapter/getAdapterId.js +9 -0
  224. package/esm/data_adapters/BaseAdapter/index.d.ts +7 -4
  225. package/esm/data_adapters/BaseAdapter/index.js +6 -5
  226. package/esm/data_adapters/BaseAdapter/stats.d.ts +37 -5
  227. package/esm/data_adapters/BaseAdapter/stats.js +89 -24
  228. package/esm/data_adapters/BaseAdapter/types.d.ts +11 -8
  229. package/esm/data_adapters/BaseAdapter/types.js +1 -0
  230. package/esm/data_adapters/BaseAdapter/util.d.ts +5 -1
  231. package/esm/data_adapters/BaseAdapter/util.js +14 -3
  232. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +1 -1
  233. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +4 -4
  234. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +36 -4
  235. package/esm/data_adapters/CytobandAdapter/configSchema.js +46 -2
  236. package/esm/data_adapters/CytobandAdapter/index.js +3 -3
  237. package/esm/data_adapters/adapterSessionRefcount.d.ts +61 -0
  238. package/esm/data_adapters/adapterSessionRefcount.js +96 -0
  239. package/esm/data_adapters/dataAdapterCache.d.ts +35 -1
  240. package/esm/data_adapters/dataAdapterCache.js +62 -22
  241. package/esm/data_adapters/getFeatureAdapter.d.ts +22 -0
  242. package/esm/data_adapters/getFeatureAdapter.js +27 -0
  243. package/esm/data_adapters/getSequenceSubAdapter.d.ts +21 -0
  244. package/esm/data_adapters/getSequenceSubAdapter.js +44 -0
  245. package/esm/pluggableElementTypes/AdapterType.d.ts +52 -2
  246. package/esm/pluggableElementTypes/AdapterType.js +44 -5
  247. package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +6 -1
  248. package/esm/pluggableElementTypes/AddTrackWorkflowType.js +3 -1
  249. package/esm/pluggableElementTypes/ConnectionType.d.ts +5 -5
  250. package/esm/pluggableElementTypes/ConnectionType.js +1 -1
  251. package/esm/pluggableElementTypes/DisplayType.d.ts +19 -10
  252. package/esm/pluggableElementTypes/DisplayType.js +53 -5
  253. package/esm/pluggableElementTypes/InternetAccountType.js +1 -1
  254. package/esm/pluggableElementTypes/PluggableElementBase.d.ts +13 -0
  255. package/esm/pluggableElementTypes/PluggableElementBase.js +13 -0
  256. package/esm/pluggableElementTypes/RpcMethodType.d.ts +132 -12
  257. package/esm/pluggableElementTypes/RpcMethodType.js +263 -98
  258. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +19 -9
  259. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +26 -20
  260. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.d.ts +5 -0
  261. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.js +18 -0
  262. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.d.ts +5 -0
  263. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.js +10 -0
  264. package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +3 -3
  265. package/esm/pluggableElementTypes/TextSearchAdapterType.js +3 -1
  266. package/esm/pluggableElementTypes/TrackType.d.ts +2 -1
  267. package/esm/pluggableElementTypes/TrackType.js +1 -1
  268. package/esm/pluggableElementTypes/ViewType.d.ts +27 -3
  269. package/esm/pluggableElementTypes/ViewType.js +84 -4
  270. package/esm/pluggableElementTypes/WidgetType.d.ts +2 -2
  271. package/esm/pluggableElementTypes/WidgetType.js +1 -1
  272. package/esm/pluggableElementTypes/addMenuItems.d.ts +87 -0
  273. package/esm/pluggableElementTypes/addMenuItems.js +82 -0
  274. package/esm/pluggableElementTypes/extendElementType.d.ts +30 -0
  275. package/esm/pluggableElementTypes/extendElementType.js +73 -0
  276. package/esm/pluggableElementTypes/index.d.ts +7 -7
  277. package/esm/pluggableElementTypes/index.js +24 -14
  278. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +70 -15
  279. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +90 -10
  280. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +646 -84
  281. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +241 -60
  282. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +216 -35
  283. package/esm/pluggableElementTypes/models/BaseTrackModel.js +365 -83
  284. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +216 -16
  285. package/esm/pluggableElementTypes/models/BaseViewModel.js +150 -16
  286. package/esm/pluggableElementTypes/models/HighlightsMixin.d.ts +51 -0
  287. package/esm/pluggableElementTypes/models/HighlightsMixin.js +78 -0
  288. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +163 -29
  289. package/esm/pluggableElementTypes/models/InternetAccountModel.js +218 -48
  290. package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +177 -0
  291. package/esm/pluggableElementTypes/models/assertDisplayContract.js +239 -0
  292. package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +22 -8
  293. package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -2
  294. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +39 -20
  295. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +23 -2
  296. package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +181 -65
  297. package/esm/pluggableElementTypes/models/baseTrackConfig.js +191 -89
  298. package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +3 -8
  299. package/esm/pluggableElementTypes/models/components/SaveTrackData.js +113 -139
  300. package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +55 -0
  301. package/esm/pluggableElementTypes/models/components/fetchTrackData.js +83 -0
  302. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +40 -0
  303. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +115 -0
  304. package/esm/pluggableElementTypes/models/index.d.ts +6 -3
  305. package/esm/pluggableElementTypes/models/index.js +10 -8
  306. package/esm/pluggableElementTypes/models/migrateTrackConfig.d.ts +34 -0
  307. package/esm/pluggableElementTypes/models/migrateTrackConfig.js +54 -0
  308. package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +75 -7
  309. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +9 -3
  310. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +153 -103
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  1024. package/esm/util/usePanZoom.d.ts +75 -0
  1025. package/esm/util/usePanZoom.js +175 -0
  1026. package/esm/util/usePanelVirtualScroll.d.ts +37 -0
  1027. package/esm/util/usePanelVirtualScroll.js +42 -0
  1028. package/esm/util/usePointerDrag.d.ts +37 -0
  1029. package/esm/util/usePointerDrag.js +61 -0
  1030. package/esm/util/useRafCommit.d.ts +4 -0
  1031. package/esm/util/useRafCommit.js +50 -0
  1032. package/esm/util/useResizeDrag.d.ts +91 -0
  1033. package/esm/util/useResizeDrag.js +105 -0
  1034. package/esm/util/useRowVirtualScroll.d.ts +32 -0
  1035. package/esm/util/useRowVirtualScroll.js +63 -0
  1036. package/esm/util/useVirtualScrollWheel.d.ts +7 -0
  1037. package/esm/util/useVirtualScrollWheel.js +108 -0
  1038. package/esm/util/viewStatus.d.ts +81 -0
  1039. package/esm/util/viewStatus.js +37 -0
  1040. package/esm/util/virtualRange.d.ts +36 -0
  1041. package/esm/util/virtualRange.js +26 -0
  1042. package/esm/util/webStorage.d.ts +26 -0
  1043. package/esm/util/webStorage.js +92 -0
  1044. package/esm/util/wheelZoom.d.ts +59 -0
  1045. package/esm/util/wheelZoom.js +231 -0
  1046. package/esm/util/whenViewSettled.d.ts +40 -0
  1047. package/esm/util/whenViewSettled.js +41 -0
  1048. package/esm/util/withFeatureDetails.d.ts +34 -0
  1049. package/esm/util/withFeatureDetails.js +59 -0
  1050. package/esm/util/withLaunchInput.d.ts +123 -0
  1051. package/esm/util/withLaunchInput.js +228 -0
  1052. package/package.json +243 -820
  1053. package/esm/ReExports/DataGrid.d.ts +0 -1
  1054. package/esm/ReExports/DataGrid.js +0 -1
  1055. package/esm/configuration/util.d.ts +0 -10
  1056. package/esm/configuration/util.js +0 -123
  1057. package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +0 -18
  1058. package/esm/data_adapters/util.d.ts +0 -1
  1059. package/esm/data_adapters/util.js +0 -6
  1060. package/esm/pluggableElementTypes/GlyphType.d.ts +0 -43
  1061. package/esm/pluggableElementTypes/GlyphType.js +0 -18
  1062. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +0 -5
  1063. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +0 -17
  1064. package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +0 -52
  1065. package/esm/pluggableElementTypes/renderers/BoxRendererType.js +0 -78
  1066. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +0 -4
  1067. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +0 -4
  1068. package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -58
  1069. package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +0 -77
  1070. package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +0 -31
  1071. package/esm/pluggableElementTypes/renderers/LayoutSession.js +0 -40
  1072. package/esm/pluggableElementTypes/renderers/RendererType.d.ts +0 -28
  1073. package/esm/pluggableElementTypes/renderers/RendererType.js +0 -20
  1074. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +0 -58
  1075. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +0 -108
  1076. package/esm/pluggableElementTypes/renderers/index.d.ts +0 -6
  1077. package/esm/pluggableElementTypes/renderers/index.js +0 -6
  1078. package/esm/pluggableElementTypes/renderers/util.d.ts +0 -3
  1079. package/esm/pluggableElementTypes/renderers/util.js +0 -14
  1080. package/esm/rpc/baseRpcConfig.d.ts +0 -8
  1081. package/esm/rpc/baseRpcConfig.js +0 -10
  1082. package/esm/rpc/mainThreadRpcConfig.d.ts +0 -8
  1083. package/esm/rpc/mainThreadRpcConfig.js +0 -8
  1084. package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +0 -17
  1085. package/esm/rpc/methods/CoreGetFeatureDensityStats.js +0 -25
  1086. package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +0 -11
  1087. package/esm/rpc/methods/CoreGetFeatureDetails.js +0 -24
  1088. package/esm/rpc/methods/CoreGetFileInfo.d.ts +0 -9
  1089. package/esm/rpc/methods/CoreGetFileInfo.js +0 -15
  1090. package/esm/rpc/methods/CoreRender.d.ts +0 -14
  1091. package/esm/rpc/methods/CoreRender.js +0 -40
  1092. package/esm/rpc/methods/CoreSaveFeatureData.d.ts +0 -16
  1093. package/esm/rpc/methods/CoreSaveFeatureData.js +0 -32
  1094. package/esm/rpc/methods/util.d.ts +0 -15
  1095. package/esm/rpc/methods/util.js +0 -7
  1096. package/esm/rpc/webWorkerRpcConfig.d.ts +0 -8
  1097. package/esm/rpc/webWorkerRpcConfig.js +0 -8
  1098. package/esm/ui/MenuButton.d.ts +0 -1
  1099. package/esm/ui/MenuButton.js +0 -1
  1100. package/esm/ui/MenuItems.d.ts +0 -15
  1101. package/esm/ui/MenuItems.js +0 -59
  1102. package/esm/ui/useEvent.d.ts +0 -1
  1103. package/esm/ui/useEvent.js +0 -10
  1104. package/esm/util/blobToDataURL.d.ts +0 -1
  1105. package/esm/util/blobToDataURL.js +0 -14
  1106. package/esm/util/compositeMap.d.ts +0 -11
  1107. package/esm/util/compositeMap.js +0 -59
  1108. package/esm/util/flatqueue/index.d.ts +0 -11
  1109. package/esm/util/flatqueue/index.js +0 -61
  1110. package/esm/util/layouts/BaseLayout.d.ts +0 -30
  1111. package/esm/util/layouts/MultiLayout.d.ts +0 -12
  1112. package/esm/util/layouts/MultiLayout.js +0 -40
  1113. package/esm/util/layouts/PileupLayout.d.ts +0 -41
  1114. package/esm/util/layouts/PileupLayout.js +0 -202
  1115. package/esm/util/layouts/PrecomputedLayout.d.ts +0 -30
  1116. package/esm/util/layouts/PrecomputedLayout.js +0 -71
  1117. package/esm/util/layouts/SceneGraph.d.ts +0 -31
  1118. package/esm/util/layouts/SceneGraph.js +0 -121
  1119. package/esm/util/makeAbortableReaction.d.ts +0 -3
  1120. package/esm/util/makeAbortableReaction.js +0 -47
  1121. package/esm/util/map-obj/index.d.ts +0 -13
  1122. package/esm/util/map-obj/index.js +0 -92
  1123. package/esm/util/nextTick.d.ts +0 -1
  1124. package/esm/util/nextTick.js +0 -3
  1125. package/esm/util/offscreenCanvasGetSerializingSvg.d.ts +0 -5
  1126. package/esm/util/offscreenCanvasGetSerializingSvg.js +0 -9
  1127. package/esm/util/offscreenCanvasUtils.d.ts +0 -12
  1128. package/esm/util/offscreenCanvasUtils.js +0 -19
  1129. package/esm/util/renderToAbstractCanvas.d.ts +0 -17
  1130. package/esm/util/renderToAbstractCanvas.js +0 -53
  1131. package/esm/util/transferables.d.ts +0 -2
  1132. package/esm/util/transferables.js +0 -35
  1133. package/esm/util/tss-react/mui/index.d.ts +0 -1
  1134. package/esm/util/tss-react/mui/index.js +0 -1
  1135. package/esm/util/tss-react/mui/mui.d.ts +0 -10
  1136. package/esm/util/tss-react/mui/mui.js +0 -5
  1137. package/esm/util/when.d.ts +0 -1
  1138. package/esm/util/when.js +0 -1
  1139. /package/esm/{data_adapters/BaseAdapter/BaseOptions.js → configuration/promotablePin.js} +0 -0
  1140. /package/esm/{util/layouts/BaseLayout.js → data_adapters/BaseAdapter/CytobandAdapter.js} +0 -0
@@ -1,90 +1,438 @@
1
- import { isWebWorker } from "./isWebWorker.js";
2
- export function createStopTokenChecker(stopToken) {
3
- return {
4
- time: Date.now(),
5
- iters: 0,
6
- stopToken,
7
- };
1
+ import { makeAbortError } from './aborting.js';
2
+ import { isWebWorker } from './isWebWorker.js';
3
+ import { nanoid } from './nanoid.js';
4
+ import { createTimeGate } from './timeGate.js';
5
+ // Atomic flag values stored in the Int32Array view of the SharedArrayBuffer.
6
+ // SAB ARM — unreached unless the host page is cross-origin isolated.
7
+ const ABORT_FLAG_CLEAR = 0;
8
+ const ABORT_FLAG_SET = 1;
9
+ // How often the SAB path performs its (cheap) atomic read. SAB ARM.
10
+ const SAB_CHECK_EVERY_N_ITERS = 10;
11
+ // THE LIVE PATH's throttle. Minimum ms between a string token's in-loop checks
12
+ // (also the linear-backoff step), and a cap so cancel latency stays bounded on a long-running loop. The
13
+ // gate exists for the synchronous XHR probe, which is far too expensive per
14
+ // item; the free set lookup rides along inside it.
15
+ const STRING_CHECK_INTERVAL_MS = 50;
16
+ const STRING_CHECK_INTERVAL_MAX_MS = 500;
17
+ function isSharedArrayBuffer(value) {
18
+ return (typeof SharedArrayBuffer !== 'undefined' &&
19
+ value instanceof SharedArrayBuffer);
8
20
  }
9
- export function createStopToken() {
10
- return URL.createObjectURL?.(new Blob()) || `${Math.random()}`;
21
+ // A view is allocated per use rather than cached per buffer. That looks like an
22
+ // easy win and is not one: the deployments this ships to are not cross-origin
23
+ // isolated, so `hasSharedArrayBuffer` is false and every token is a string —
24
+ // caching here would add a module-global WeakMap to speed up the branch that
25
+ // never runs. The string path allocates nothing.
26
+ function sabView(stopToken) {
27
+ return new Int32Array(stopToken);
11
28
  }
12
- function isSharedArrayBuffer(value) {
29
+ /**
30
+ * Narrow an untyped RPC argument to a StopToken, so a caller holding
31
+ * `Record<string, unknown>` can check one without a cast.
32
+ */
33
+ export function isStopToken(value) {
34
+ return typeof value === 'string' || isSharedArrayBuffer(value);
35
+ }
36
+ // Browser support for SharedArrayBuffer requires cross-origin isolation
37
+ // headers (COOP/COEP). Exported so diagnostic surfaces (about widget,
38
+ // error stack trace) can show whether the page actually got the fast path.
39
+ //
40
+ // **ISOLATION IS THE QUESTION, not constructibility**, which is what the
41
+ // sentence above has always claimed and what a bare `new SharedArrayBuffer(4)`
42
+ // never asked. A browser gates the constructor on isolation, so on the web the
43
+ // two agree — but a V8 embedder does not, and both of ours are embedders:
44
+ //
45
+ // - **jest.** Node constructs one unconditionally, so every test ran the SAB
46
+ // path while every browser deployment ran the string path. That inverted the
47
+ // fidelity — the SAB check reads its atomic once every 10 iterations where a
48
+ // string token's time gate fires on the first call — and hid a real bug for
49
+ // as long as it existed (`withProgress`'s kickoff `report(0)` throwing past
50
+ // `endPhase()` on an already-stopped token, a9e5daba8f). A test suite that
51
+ // cannot reach the deployment path by default is the wrong way round.
52
+ // - **Electron.** Measured, because the guess went the other way: with
53
+ // `nodeIntegration: true` and `contextIsolation: false` it looks as though
54
+ // Node's `SharedArrayBuffer` would reach the renderer off a `file://` page.
55
+ // It does not — Blink removes the binding and Node integration does not put
56
+ // it back. On Electron 44, packaged (`file://`) and dev (`http://localhost`),
57
+ // renderer and worker alike, `typeof SharedArrayBuffer` is `'undefined'` and
58
+ // `crossOriginIsolated` is false. So jbrowse-desktop was already on the
59
+ // string path and this changes nothing for it.
60
+ //
61
+ // Which leaves jest as the only realm this moves, and no shipped configuration
62
+ // on the SAB branch at all unless a host isolates itself.
63
+ //
64
+ // What this does NOT change is the one configuration the branch is kept for:
65
+ // an embedding host that sets COOP/COEP is cross-origin isolated, reports so
66
+ // here, and still gets the fast path (ADR-056). `website/scripts/coi-probe.ts`
67
+ // serves exactly that page and is the regression check.
68
+ export const hasSharedArrayBuffer = (() => {
69
+ if (globalThis.crossOriginIsolated !==
70
+ true) {
71
+ return false;
72
+ }
13
73
  try {
14
- return (typeof SharedArrayBuffer !== 'undefined' &&
15
- value instanceof SharedArrayBuffer);
74
+ return isSharedArrayBuffer(new SharedArrayBuffer(4));
16
75
  }
17
76
  catch {
18
77
  return false;
19
78
  }
79
+ })();
80
+ // ---------------------------------------------------------------------------
81
+ // Stopped-id registry (the message path)
82
+ // ---------------------------------------------------------------------------
83
+ // Retention for a stopped id. An entry is only useful while work carrying that
84
+ // token could still check it, and work unwinds within moments of its own
85
+ // cancellation, so this is bounded by *age* rather than by a count: a count cap
86
+ // silently drops a still-live token's stopped-ness once enough other operations
87
+ // have been cancelled, and answering "not stopped" for a stopped token is a lost
88
+ // cancellation, not a slow one. Age bounds memory by cancellation *rate*
89
+ // instead, and no plausible check arrives minutes after its own stop.
90
+ const STOPPED_ID_TTL_MS = 5 * 60 * 1000;
91
+ // Sweep only once the map is big enough that retention could matter, so the
92
+ // common case is a plain insert.
93
+ const STOPPED_ID_SWEEP_AT = 256;
94
+ const stoppedIds = new Map();
95
+ const signalControllers = new Map();
96
+ /**
97
+ * Record that a string token has been stopped, and abort any {@link
98
+ * stopTokenSignal} taken against it. Called locally by {@link stopStopToken},
99
+ * and in a worker by `RpcServer` when the main thread posts a stopped id.
100
+ */
101
+ export function markStopTokenStopped(id) {
102
+ const now = Date.now();
103
+ // delete first: `set` on an existing key keeps its original insertion
104
+ // position, so a re-stopped id would sit at the front of the iteration order
105
+ // carrying a fresh timestamp, and the sweep below would break there forever
106
+ stoppedIds.delete(id);
107
+ stoppedIds.set(id, now);
108
+ if (stoppedIds.size > STOPPED_ID_SWEEP_AT) {
109
+ // a Map iterates in insertion order, and timestamps only increase, so this
110
+ // can stop at the first entry still inside the window
111
+ for (const [key, stoppedAt] of stoppedIds) {
112
+ if (now - stoppedAt < STOPPED_ID_TTL_MS) {
113
+ break;
114
+ }
115
+ stoppedIds.delete(key);
116
+ }
117
+ }
118
+ const controllers = signalControllers.get(id);
119
+ if (controllers) {
120
+ signalControllers.delete(id);
121
+ for (const controller of controllers) {
122
+ controller.abort(makeAbortError());
123
+ }
124
+ }
125
+ }
126
+ const broadcasters = new Set();
127
+ /**
128
+ * Register a transport that forwards a stopped token's id to wherever the work
129
+ * is running. Drivers owning a worker pool register at construction and drop it
130
+ * on destroy; `MainThreadRpcDriver` needs none — its work shares this module
131
+ * instance and reads `stoppedIds` directly, which is why main-thread RPC gets
132
+ * exact cancellation without any message at all.
133
+ */
134
+ export function registerStopTokenBroadcaster(fn) {
135
+ broadcasters.add(fn);
136
+ return () => {
137
+ broadcasters.delete(fn);
138
+ };
20
139
  }
140
+ // ---------------------------------------------------------------------------
141
+ // Create / stop
142
+ // ---------------------------------------------------------------------------
143
+ /**
144
+ * Mint a token. **The right-hand branch is the one that runs** — see "Which
145
+ * path runs where"; `hasSharedArrayBuffer` is false in everything we ship.
146
+ */
147
+ export function createStopToken() {
148
+ // A fresh SharedArrayBuffer is already zeroed, i.e. ABORT_FLAG_CLEAR.
149
+ return hasSharedArrayBuffer ? new SharedArrayBuffer(4) : createStringToken();
150
+ }
151
+ // One Blob behind every token. Object URLs minted over the same blob are
152
+ // distinct ids and revoke independently, so nothing about the probe changes —
153
+ // but a zoom mints these continuously and constructing the blob was showing up
154
+ // beside `createObjectURL` in a profile.
155
+ const emptyBlob = new Blob();
156
+ // Uniqueness for the fallback id below, which is the one thing it must have and
157
+ // the one thing `nanoid()` alone does not guarantee: it draws from
158
+ // `crypto.getRandomValues`, and an environment is free to replace that. Ours
159
+ // does — `config/jest/deterministicIds.js` swaps in a counter PRNG and RESETS
160
+ // it before every test, so every test drew the same first id. Since a stopped
161
+ // id is recorded in a module-global map, one stopped token then read as stopped
162
+ // in every later test of the file, which is a live token that throws.
163
+ //
164
+ // Invisible until it mattered: this fallback serves the realms with no
165
+ // `createObjectURL`, jest among them, and jest minted SharedArrayBuffers — whose
166
+ // identity is the object — until `hasSharedArrayBuffer` started asking about
167
+ // cross-origin isolation. A browser has `createObjectURL` and mints distinct
168
+ // ids per call, so nothing here changes for a deployment.
169
+ let stringTokenSeq = 0;
170
+ function createStringToken() {
171
+ // A blob URL serves as both the token's unique id (which is all the message
172
+ // path needs) and the thing the sync probe fails against once revoked. Where
173
+ // createObjectURL is unavailable a bare id still gives full await-boundary
174
+ // cancellation — it just has no sync probe. That is a real degradation but no
175
+ // longer the old hole, where such a token could never be cancelled at all.
176
+ // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
177
+ return URL.createObjectURL === undefined
178
+ ? `${nanoid()}-${++stringTokenSeq}`
179
+ : URL.createObjectURL(emptyBlob);
180
+ }
181
+ /**
182
+ * Stop a token: every check against it now throws, every {@link
183
+ * stopTokenSignal} taken against it aborts, and workers are told so their
184
+ * in-flight calls do the same.
185
+ *
186
+ * Call it when an operation ends, not only when cancelling one — a completed
187
+ * fetch's token otherwise pins its signal controllers until the next fetch
188
+ * supersedes it.
189
+ */
21
190
  export function stopStopToken(stopToken) {
22
191
  if (stopToken !== undefined) {
192
+ // SAB ARM — dead in every configuration we ship
23
193
  if (isSharedArrayBuffer(stopToken)) {
24
- Atomics.store(new Int32Array(stopToken), 0, 1);
194
+ const view = sabView(stopToken);
195
+ Atomics.store(view, 0, ABORT_FLAG_SET);
196
+ // wakes the waitAsync watcher stopTokenSignal installs; free when there
197
+ // is none waiting
198
+ Atomics.notify(view, 0);
25
199
  }
26
- else {
200
+ else if (!stoppedIds.has(stopToken)) {
201
+ // Guarded, because one token is stopped two or three times over. A fetch's
202
+ // `finally` stops it, the rotation's next `begin` stops what it is
203
+ // superseding, and `cancel` stops it again — and each repeat re-inserted
204
+ // the id and fanned a postMessage out to every worker in the pool for a
205
+ // token they had all already been told about. The revoke is idempotent
206
+ // but the broadcast is not free.
207
+ markStopTokenStopped(stopToken);
208
+ for (const broadcast of broadcasters) {
209
+ broadcast(stopToken);
210
+ }
211
+ // revoking is what makes the sync probe start failing, so this is load
212
+ // bearing for in-loop cancellation and not just cleanup
213
+ // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
27
214
  URL.revokeObjectURL?.(stopToken);
28
215
  }
29
216
  }
30
217
  }
31
- export function checkStopToken(stopToken) {
32
- if (stopToken === undefined) {
33
- return;
34
- }
35
- if (isSharedArrayBuffer(stopToken)) {
36
- if (Atomics.load(new Int32Array(stopToken), 0) === 1) {
37
- throw new Error('aborted');
38
- }
39
- }
40
- else if (typeof jest === 'undefined' && isWebWorker()) {
218
+ /**
219
+ * The production {@link SyncStopProbe}: a synchronous XHR against the token's
220
+ * blob URL, which succeeds while the URL is live and throws once the main thread
221
+ * has revoked it.
222
+ *
223
+ * Returns false rather than probing when it cannot tell — outside a worker
224
+ * (synchronous XHR there is deprecated and would block the UI) or on a
225
+ * non-`blob:` id (probing one would 404 and abort on the first check). jsdom is
226
+ * not a worker global, so this is inert under jest; see {@link SyncStopProbe}
227
+ * for what that cost us and how tests work around it.
228
+ */
229
+ function probeBlobUrl(stopToken) {
230
+ let stopped = false;
231
+ if (isWebWorker() && stopToken.startsWith('blob:')) {
41
232
  const xhr = new XMLHttpRequest();
42
233
  xhr.open('GET', stopToken, false);
43
234
  try {
44
235
  xhr.send(null);
45
236
  }
46
237
  catch {
47
- throw new Error('aborted');
238
+ stopped = true;
48
239
  }
49
240
  }
241
+ return stopped;
50
242
  }
51
- export function checkStopToken2(lastCheck) {
52
- if (!lastCheck) {
53
- return;
243
+ // ---------------------------------------------------------------------------
244
+ // One-shot check (use at async boundaries)
245
+ // ---------------------------------------------------------------------------
246
+ /**
247
+ * Whether this token has been stopped, without throwing. Prefer {@link
248
+ * checkStopToken} where an abort should unwind the operation; use this to bail
249
+ * out cleanly instead of throwing and catching one frame up.
250
+ */
251
+ export function isStopped(stopToken) {
252
+ // the third arm is the live one; the middle is the SAB one
253
+ return stopToken === undefined
254
+ ? false
255
+ : isSharedArrayBuffer(stopToken)
256
+ ? Atomics.load(sabView(stopToken), 0) === ABORT_FLAG_SET
257
+ : stoppedIds.has(stopToken);
258
+ }
259
+ /**
260
+ * Throw an AbortError if this token has been stopped. Place at await
261
+ * boundaries; this costs an atomic load or a set lookup, never a probe.
262
+ */
263
+ export function checkStopToken(stopToken) {
264
+ if (isStopped(stopToken)) {
265
+ throw makeAbortError();
54
266
  }
55
- const { stopToken, backoff = true, checkInterval = 50, checkIters = 100, } = lastCheck;
56
- lastCheck.iters++;
57
- if (stopToken === undefined) {
58
- return;
267
+ }
268
+ /**
269
+ * Run an awaited stage under a stop token: checked before it starts, and again
270
+ * once it settles. Prefer this to hand-placing {@link checkStopToken} around an
271
+ * await — the point is that the check *after* comes with the one before, and the
272
+ * one after is always the one that gets left out.
273
+ *
274
+ * It reads as sufficient to check at the top of an operation, because at the
275
+ * time you write it the await below is not yet the slow part. `BaseRpcDriver`
276
+ * checked at entry and then awaited `serializeArguments`, which resolves the
277
+ * refName map, which downloads the adapter's index — and for an in-memory
278
+ * adapter the whole file. A stop landing in that window woke a worker anyway.
279
+ *
280
+ * {@link updateStatus} and {@link withProgress} in `progress.ts` are this same
281
+ * shape for a stage that also has something to say on the status channel; reach
282
+ * for one of those when there is a label, and this when there isn't. What you
283
+ * should not reach for is a bare `checkStopToken` sprinkled at a boundary you
284
+ * happened to think of — the periodic in-loop case is
285
+ * {@link checkStopTokenThrottled}, and it is driven by `createProgressReporter`
286
+ * for the same reason.
287
+ *
288
+ * **Checking twice costs nothing, and it is worth knowing why**, because the
289
+ * cost of a stop-token check is otherwise easy to remember backwards. The
290
+ * expensive one is the synchronous XHR blob probe, which runs at up to ~10ms a
291
+ * call — and it is reached ONLY from {@link checkStopTokenThrottled}, behind a
292
+ * wall-clock gate with linear backoff, precisely because of that. This path is
293
+ * {@link isStopped}: an atomic load for a SAB token, a `Map.has` for a string
294
+ * one. So an extra boundary check here is free, and a per-item one in a tight
295
+ * loop is not — which is the split the two functions exist to keep.
296
+ */
297
+ export async function withStopTokenCheck(stopToken, fn) {
298
+ checkStopToken(stopToken);
299
+ const result = await fn();
300
+ checkStopToken(stopToken);
301
+ return result;
302
+ }
303
+ /**
304
+ * An `AbortSignal` wired to a stop token, so a canceled operation drops its
305
+ * in-flight HTTP reads at the socket instead of downloading them to completion
306
+ * and discarding the result. Call it where the work runs (worker-side for
307
+ * worker RPC) and pass `signal` down through `BaseOptions`, which the gmod
308
+ * readers already forward to `fetch`.
309
+ *
310
+ * No polling and no synchronous probe: a string token aborts off the same
311
+ * posted id the await-boundary check reads, and a SharedArrayBuffer token off
312
+ * `Atomics.waitAsync`, woken by the `Atomics.notify` in {@link stopStopToken}
313
+ * — that one lands a turn or two after the notify rather than synchronously
314
+ * with it, which costs nothing when the point is to stop a download.
315
+ *
316
+ * `dispose()` in a `finally` — an undisposed entry pins its controller until
317
+ * the token is stopped.
318
+ */
319
+ export function stopTokenSignal(stopToken) {
320
+ const controller = new AbortController();
321
+ let dispose = () => { };
322
+ if (isStopped(stopToken)) {
323
+ controller.abort(makeAbortError());
59
324
  }
60
- if (lastCheck.iters % checkIters !== 0) {
61
- return;
325
+ else if (stopToken !== undefined) {
326
+ // SAB ARM — dead in every configuration we ship
327
+ if (isSharedArrayBuffer(stopToken)) {
328
+ // waitAsync is specified alongside SharedArrayBuffer, but it postdates it
329
+ // in browsers, so treat it as optional rather than assumed: without it a
330
+ // SAB deployment simply keeps today's behavior of not aborting sockets.
331
+ // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
332
+ if (Atomics.waitAsync !== undefined) {
333
+ const wait = Atomics.waitAsync(sabView(stopToken), 0, ABORT_FLAG_CLEAR);
334
+ let disposed = false;
335
+ dispose = () => {
336
+ disposed = true;
337
+ };
338
+ const onWake = () => {
339
+ if (!disposed) {
340
+ controller.abort(makeAbortError());
341
+ }
342
+ };
343
+ if (wait.async) {
344
+ void wait.value.then(onWake);
345
+ }
346
+ else {
347
+ // 'not-equal' — the flag moved between the isStopped read above and
348
+ // here, so it is already set
349
+ onWake();
350
+ }
351
+ }
352
+ }
353
+ else {
354
+ const controllers = signalControllers.get(stopToken);
355
+ if (controllers) {
356
+ controllers.add(controller);
357
+ }
358
+ else {
359
+ signalControllers.set(stopToken, new Set([controller]));
360
+ }
361
+ dispose = () => {
362
+ const set = signalControllers.get(stopToken);
363
+ if (set) {
364
+ set.delete(controller);
365
+ if (set.size === 0) {
366
+ signalControllers.delete(stopToken);
367
+ }
368
+ }
369
+ };
370
+ }
62
371
  }
63
- if (isSharedArrayBuffer(stopToken)) {
64
- checkStopToken(stopToken);
372
+ return { signal: controller.signal, dispose };
373
+ }
374
+ /**
375
+ * Run `fn` with an `AbortSignal` wired to this stop token, releasing the signal
376
+ * afterwards however `fn` settles. The shape to reach for at an adapter's read
377
+ * call — {@link stopTokenSignal} directly is for the rare case that outlives one
378
+ * awaited call, and it then owns remembering to dispose.
379
+ */
380
+ export async function withStopTokenSignal(stopToken, fn) {
381
+ const { signal, dispose } = stopTokenSignal(stopToken);
382
+ try {
383
+ return await fn(signal);
65
384
  }
66
- const now = Date.now();
67
- if (now - lastCheck.time > checkInterval) {
68
- lastCheck.time = now;
69
- checkStopToken(stopToken);
70
- if (backoff) {
71
- lastCheck.checkInterval ??= checkInterval;
72
- lastCheck.checkInterval += checkInterval;
73
- }
385
+ finally {
386
+ dispose();
74
387
  }
75
388
  }
76
- export function forEachWithStopTokenCheck(iter, stopToken, arg, durationMs = 400, checkIters = 100, backoff = true) {
77
- const lastCheck = {
78
- time: Date.now(),
79
- iters: 0,
80
- checkInterval: durationMs,
81
- backoff,
82
- checkIters,
389
+ export function createStopTokenChecker(stopToken) {
390
+ return {
83
391
  stopToken,
392
+ sabView: stopToken !== undefined && isSharedArrayBuffer(stopToken)
393
+ ? sabView(stopToken)
394
+ : undefined,
395
+ iters: 0,
396
+ checkInterval: STRING_CHECK_INTERVAL_MS,
397
+ checkDue: createTimeGate(),
398
+ syncProbe: probeBlobUrl,
84
399
  };
85
- let iters = 0;
86
- for (const t of iter) {
87
- arg(t, iters++);
88
- checkStopToken2(lastCheck);
400
+ }
401
+ /**
402
+ * The in-loop counterpart to {@link checkStopToken}, throttled so a
403
+ * million-iteration loop doesn't pay per item.
404
+ *
405
+ * Reads the stopped-id set *and* the synchronous probe, because a loop that
406
+ * awaits between items can see the first and a loop that never yields can only
407
+ * see the second. Both are behind the same wall-clock gate, so the per-item cost
408
+ * is one counter bump.
409
+ */
410
+ export function checkStopTokenThrottled(checker) {
411
+ // narrowed into a local because a checker's `sabView` and its token type move
412
+ // together but are separate properties, so the branch below can't discriminate
413
+ // on `sabView` alone
414
+ const stopToken = checker?.stopToken;
415
+ if (checker !== undefined && stopToken !== undefined) {
416
+ // THE LIVE PATH. Both halves of it: the set lookup catches a token stopped
417
+ // through the message path, the probe catches one in a loop that never
418
+ // yields to receive that message.
419
+ if (typeof stopToken === 'string') {
420
+ if (checker.checkDue(checker.checkInterval)) {
421
+ if (stoppedIds.has(stopToken) || checker.syncProbe(stopToken)) {
422
+ throw makeAbortError();
423
+ }
424
+ // Linear backoff, capped, so probe cost thins over a long loop while
425
+ // cancel latency stays bounded. Advances only past a probe that ran.
426
+ checker.checkInterval = Math.min(checker.checkInterval + STRING_CHECK_INTERVAL_MS, STRING_CHECK_INTERVAL_MAX_MS);
427
+ }
428
+ // SAB ARM, dead in every configuration we ship: a cheap atomic read,
429
+ // gated by a small iteration mask. The counter is bumped here rather than
430
+ // above the branch because it is the only reader of it.
431
+ }
432
+ else if (checker.sabView &&
433
+ ++checker.iters % SAB_CHECK_EVERY_N_ITERS === 0 &&
434
+ Atomics.load(checker.sabView, 0) === ABORT_FLAG_SET) {
435
+ throw makeAbortError();
436
+ }
89
437
  }
90
438
  }
@@ -0,0 +1,5 @@
1
+ export declare function shorten(name: string, max?: number, short?: number): string;
2
+ export declare function shorten2(name: string, max?: number): string;
3
+ export declare function truncateMiddle(str: string, maxLen?: number): string;
4
+ export declare function pluralize(count: number, noun: string, plural?: string): string;
5
+ export declare function capitalizeFirst(s: string): string;
@@ -0,0 +1,34 @@
1
+ export function shorten(name, max = 70, short = 30) {
2
+ return name.length > max
3
+ ? `${name.slice(0, short)}...${name.slice(-short)}`
4
+ : name;
5
+ }
6
+ export function shorten2(name, max = 70) {
7
+ return name.length > max ? `${name.slice(0, max)}...` : name;
8
+ }
9
+ export function truncateMiddle(str, maxLen = 40) {
10
+ if (str.length <= maxLen) {
11
+ return str;
12
+ }
13
+ const half = Math.floor((maxLen - 3) / 2);
14
+ return `${str.slice(0, half)}...${str.slice(-half)}`;
15
+ }
16
+ // Plural noun for a count, for the "N hidden features" / "Clear N highlights"
17
+ // family of labels. Takes the count rather than returning a bare suffix so the
18
+ // call site reads as the sentence it produces, and so `0` pairs with the plural
19
+ // ("0 features") the way English does — the hand-written `n > 1 ? 's' : ''`
20
+ // scattered around got that right only because every one of those labels was
21
+ // already gated on n > 0.
22
+ //
23
+ // `plural` covers the irregular pairs the same sentences run into once the noun
24
+ // is not the only word that inflects — `pluralize(n, 'was', 'were')`,
25
+ // `pluralize(n, 'URL is', 'URLs are')` — so those don't grow a second helper.
26
+ export function pluralize(count, noun, plural = `${noun}s`) {
27
+ return count === 1 ? noun : plural;
28
+ }
29
+ // Sentence-case a noun that arrives lowercase because it also appears
30
+ // mid-sentence — the display nouns ('feature', 'read', 'variant') that name
31
+ // what a track holds are the case this exists for.
32
+ export function capitalizeFirst(s) {
33
+ return `${s.charAt(0).toUpperCase()}${s.slice(1)}`;
34
+ }
@@ -0,0 +1,7 @@
1
+ export declare function stripAlpha(str: string): string;
2
+ export declare function getStrokeProps(str: string): {
3
+ [x: string]: string | number;
4
+ };
5
+ export declare function getFillProps(str: string): {
6
+ [x: string]: string | number;
7
+ };
@@ -0,0 +1,28 @@
1
+ import { formatHEX, getAlpha, newColor, parseCssColorOr } from './colorBits.js';
2
+ // Matches colord()'s fallback for unparsable input.
3
+ const FALLBACK = newColor(0, 0, 0, 255);
4
+ // Works on the packed Color directly rather than via colord(): these run per
5
+ // path per render on overlay tracks, and each colord() allocates an object
6
+ // carrying nine closures — two of them, since .alpha(1) builds another. formatHEX
7
+ // ignores the alpha byte, so stripping alpha before formatting was a no-op.
8
+ export function stripAlpha(str) {
9
+ return formatHEX(parseCssColorOr(str, FALLBACK));
10
+ }
11
+ function svgColorProps(str, colorKey, opacityKey) {
12
+ if (str) {
13
+ const c = parseCssColorOr(str, FALLBACK);
14
+ return {
15
+ [opacityKey]: getAlpha(c) / 255,
16
+ [colorKey]: formatHEX(c),
17
+ };
18
+ }
19
+ else {
20
+ return {};
21
+ }
22
+ }
23
+ export function getStrokeProps(str) {
24
+ return svgColorProps(str, 'stroke', 'strokeOpacity');
25
+ }
26
+ export function getFillProps(str) {
27
+ return svgColorProps(str, 'fill', 'fillOpacity');
28
+ }