@gen-epix/ui 1.14.4 → 1.15.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +3 -3
- package/dist/index.js +27287 -27948
- package/package.json +94 -84
- package/src/@types/environment.d.ts +54 -0
- package/src/api/api.ts +43576 -0
- package/src/api/base.ts +111 -0
- package/src/api/common.ts +168 -0
- package/src/api/configuration.ts +118 -0
- package/src/api/index.ts +20 -0
- package/src/assets/icons/CollectionIcon.svg +1 -0
- package/src/assets/icons/DnaIcon.svg +1 -0
- package/src/assets/icons/VirusIcon.svg +1 -0
- package/src/assets/logo/logo-rijksoverheid.svg +42 -0
- package/src/assets/logo/logo-rivm.svg +6 -0
- package/src/classes/Subject/Subject.ts +26 -0
- package/src/classes/Subject/index.ts +1 -0
- package/src/classes/TableEventBus/TableEventBus.ts +14 -0
- package/src/classes/TableEventBus/index.ts +1 -0
- package/src/classes/abstracts/EventBusAbstract/EventBusAbstract.ts +37 -0
- package/src/classes/abstracts/EventBusAbstract/index.ts +1 -0
- package/src/classes/abstracts/FilterAbstract/FilterAbstract.ts +54 -0
- package/src/classes/abstracts/FilterAbstract/index.ts +1 -0
- package/src/classes/abstracts/SubscribableAbstract/SubscribableAbstract.ts +20 -0
- package/src/classes/abstracts/SubscribableAbstract/index.ts +1 -0
- package/src/classes/errors/UploadError.ts +11 -0
- package/src/classes/errors/index.ts +1 -0
- package/src/classes/filters/BooleanFilter.ts +31 -0
- package/src/classes/filters/DateFilter.ts +133 -0
- package/src/classes/filters/GeoFilter.ts +60 -0
- package/src/classes/filters/MultiSelectFilter.ts +70 -0
- package/src/classes/filters/NumberRangeFilter.ts +82 -0
- package/src/classes/filters/SelectionFilter.ts +25 -0
- package/src/classes/filters/TextFilter.ts +36 -0
- package/src/classes/filters/TreeFilter.ts +22 -0
- package/src/classes/managers/AuthenticationManager/AuthenticationManager.ts +94 -0
- package/src/classes/managers/AuthenticationManager/index.ts +1 -0
- package/src/classes/managers/AuthorizationManager/AuthorizationManager.ts +70 -0
- package/src/classes/managers/AuthorizationManager/index.ts +1 -0
- package/src/classes/managers/BackendVersionManager/BackendVersionManager.ts +23 -0
- package/src/classes/managers/BackendVersionManager/index.ts +1 -0
- package/src/classes/managers/BreadcrumbManager/BreadcrumbManager.ts +30 -0
- package/src/classes/managers/BreadcrumbManager/index.ts +1 -0
- package/src/classes/managers/ConfigManager/ConfigManager.ts +31 -0
- package/src/classes/managers/ConfigManager/index.ts +1 -0
- package/src/classes/managers/DevicePixelRatioManager/DevicePixelRatioManager.ts +27 -0
- package/src/classes/managers/DevicePixelRatioManager/index.ts +1 -0
- package/src/classes/managers/EmotionCacheManager/EmotionCacheManager.ts +27 -0
- package/src/classes/managers/EmotionCacheManager/index.ts +1 -0
- package/src/classes/managers/EpiDataManager/EpiDataManager.ts +196 -0
- package/src/classes/managers/EpiDataManager/index.ts +1 -0
- package/src/classes/managers/EpiEventBusManager/EpiEventBusManager.ts +61 -0
- package/src/classes/managers/EpiEventBusManager/index.ts +1 -0
- package/src/classes/managers/EpiHighlightingManager/EpiHighlightingManager.ts +32 -0
- package/src/classes/managers/EpiHighlightingManager/index.ts +1 -0
- package/src/classes/managers/EpiLineListCaseSetMembersManager/EpiListsCaseSetMembersManager.ts +118 -0
- package/src/classes/managers/EpiLineListCaseSetMembersManager/index.ts +1 -0
- package/src/classes/managers/FeatureFlagsManager/FeatureFlagsManager.ts +30 -0
- package/src/classes/managers/FeatureFlagsManager/index.ts +1 -0
- package/src/classes/managers/I18nManager/I18nManager.ts +105 -0
- package/src/classes/managers/I18nManager/index.ts +1 -0
- package/src/classes/managers/InactivityManager/InactivityManager.ts +119 -0
- package/src/classes/managers/InactivityManager/index.ts +1 -0
- package/src/classes/managers/KeyboardShortcutManager/KeyboardShortcutManager.ts +78 -0
- package/src/classes/managers/KeyboardShortcutManager/index.ts +1 -0
- package/src/classes/managers/LogManager/LogManager.ts +151 -0
- package/src/classes/managers/LogManager/index.ts +1 -0
- package/src/classes/managers/NavigationHistoryManager/NavigationHistoryManager.ts +16 -0
- package/src/classes/managers/NavigationHistoryManager/index.ts +1 -0
- package/src/classes/managers/NotificationManager/NotificationManager.ts +104 -0
- package/src/classes/managers/NotificationManager/index.ts +1 -0
- package/src/classes/managers/PageEventBusManager/PageEventBusManager.ts +116 -0
- package/src/classes/managers/PageEventBusManager/index.ts +1 -0
- package/src/classes/managers/QueryClientManager/QueryClientManager.ts +51 -0
- package/src/classes/managers/QueryClientManager/index.ts +1 -0
- package/src/classes/managers/RouterManager/RouterManager.ts +25 -0
- package/src/classes/managers/RouterManager/index.ts +1 -0
- package/src/classes/managers/UserSettingsManager/UserSettingsManager.ts +16 -0
- package/src/classes/managers/UserSettingsManager/index.ts +1 -0
- package/src/classes/managers/WindowManager/WindowManager.test.ts +23 -0
- package/src/classes/managers/WindowManager/WindowManager.ts +26 -0
- package/src/classes/managers/WindowManager/index.ts +1 -0
- package/src/components/app/App/App.tsx +58 -0
- package/src/components/app/App/index.ts +1 -0
- package/src/components/app/ApplicationBootstrap/ApplicationBootstrap.tsx +223 -0
- package/src/components/app/ApplicationBootstrap/index.ts +1 -0
- package/src/components/app/RouterRoot/RouterRoot.tsx +187 -0
- package/src/components/app/RouterRoot/index.ts +1 -0
- package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialog.tsx +347 -0
- package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialogSuccessNotificationMessage.tsx +38 -0
- package/src/components/epi/EpiAddCasesToEventDialog/index.ts +1 -0
- package/src/components/epi/EpiBulkEditCaseDialog/EpiBulkEditCaseDialog.tsx +61 -0
- package/src/components/epi/EpiBulkEditCaseDialog/index.ts +1 -0
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseCaseSetInfo.tsx +137 -0
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseContent.tsx +127 -0
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseForm.tsx +111 -0
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseInfoDialog.tsx +377 -0
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingForm.tsx +140 -0
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingInfo.tsx +23 -0
- package/src/components/epi/EpiCaseInfoDialog/EpiReadOnlyCaseContent.tsx +89 -0
- package/src/components/epi/EpiCaseInfoDialog/index.ts +1 -0
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetContent.tsx +108 -0
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetDescription.tsx +34 -0
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetForm.tsx +151 -0
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetInfoDialog.tsx +389 -0
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingForm.tsx +155 -0
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingInfo.tsx +23 -0
- package/src/components/epi/EpiCaseSetInfoDialog/index.ts +1 -0
- package/src/components/epi/EpiCaseSummary/EpiCaseSummary.tsx +141 -0
- package/src/components/epi/EpiCaseSummary/index.ts +1 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoAccessRights.tsx +91 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoColAccessRights.tsx +118 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoData.tsx +38 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialog.tsx +39 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogContent.tsx +169 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogWithLoader.tsx +42 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoRegions.tsx +87 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoTrees.tsx +73 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoValues.tsx +61 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoVariableDetails.tsx +151 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/index.ts +10 -0
- package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarning.tsx +190 -0
- package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarningCaseSetLink.tsx +62 -0
- package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/index.ts +1 -0
- package/src/components/epi/EpiCompletCaseTypeLoader/EpiCompletCaseTypeLoader.tsx +87 -0
- package/src/components/epi/EpiCompletCaseTypeLoader/index.ts +1 -0
- package/src/components/epi/EpiContactDetailsDialog/EpiContactDetailsDialog.tsx +151 -0
- package/src/components/epi/EpiContactDetailsDialog/index.ts +1 -0
- package/src/components/epi/EpiContextMenu/EpiContextMenu.tsx +155 -0
- package/src/components/epi/EpiContextMenu/index.ts +1 -0
- package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialog.tsx +386 -0
- package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialogSuccessNotificationMessage.tsx +30 -0
- package/src/components/epi/EpiCreateEventDialog/index.ts +1 -0
- package/src/components/epi/EpiCurve/EpiCurve.tsx +525 -0
- package/src/components/epi/EpiCurve/index.ts +1 -0
- package/src/components/epi/EpiCustomTabPanel/EpiCustomTabPanel.tsx +27 -0
- package/src/components/epi/EpiCustomTabPanel/index.ts +1 -0
- package/src/components/epi/EpiDashboard/EpiDashboard.tsx +390 -0
- package/src/components/epi/EpiDashboard/EpiDashboardDownloadSidebarItem.tsx +154 -0
- package/src/components/epi/EpiDashboard/EpiDashboardGeneralSettingsForm.tsx +89 -0
- package/src/components/epi/EpiDashboard/EpiDashboardLayoutRenderer.tsx +248 -0
- package/src/components/epi/EpiDashboard/EpiDashboardLayoutSettingsForm.tsx +160 -0
- package/src/components/epi/EpiDashboard/EpiDashboardSettingsSidebarItem.tsx +93 -0
- package/src/components/epi/EpiDashboard/EpiDashboardTreeSettingsForm.tsx +90 -0
- package/src/components/epi/EpiDashboard/index.ts +1 -0
- package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoader.tsx +34 -0
- package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoaderContent.tsx +73 -0
- package/src/components/epi/EpiDashboardStoreLoader/index.ts +2 -0
- package/src/components/epi/EpiDashboardStoreLoader/withEpiDashboardStore.tsx +19 -0
- package/src/components/epi/EpiDataCollectionAccessInfo/EpiDataCollectionAccessInfo.tsx +88 -0
- package/src/components/epi/EpiDataCollectionAccessInfo/index.ts +1 -0
- package/src/components/epi/EpiFindSimilarCasesDialog/EpiFindSimilarCasesDialog.tsx +302 -0
- package/src/components/epi/EpiFindSimilarCasesDialog/index.ts +1 -0
- package/src/components/epi/EpiLegendaItem/EpiLegendaItem.tsx +106 -0
- package/src/components/epi/EpiLegendaItem/index.ts +1 -0
- package/src/components/epi/EpiLineList/EpiLineList.tsx +492 -0
- package/src/components/epi/EpiLineList/EpiLineListPrimaryMenu.tsx +189 -0
- package/src/components/epi/EpiLineList/EpiLineListSecondaryMenu.tsx +56 -0
- package/src/components/epi/EpiLineList/EpiLineListTitle.tsx +28 -0
- package/src/components/epi/EpiLineList/index.ts +1 -0
- package/src/components/epi/EpiLineList/useEpiLineListEmitDownloadOptions.tsx +102 -0
- package/src/components/epi/EpiMap/EpiMap.tsx +547 -0
- package/src/components/epi/EpiMap/index.ts +1 -0
- package/src/components/epi/EpiRemoveCasesFromEventDialog/EpiRemoveCasesFromEventDialog.tsx +169 -0
- package/src/components/epi/EpiRemoveCasesFromEventDialog/index.ts +1 -0
- package/src/components/epi/EpiRemoveFindSimilarCasesResultDialog/EpiRemoveFindSimilarCasesResultDialog.tsx +216 -0
- package/src/components/epi/EpiSequenceDownloadDialog/EpiSequenceDownloadDialog.tsx +151 -0
- package/src/components/epi/EpiSequenceDownloadDialog/index.ts +1 -0
- package/src/components/epi/EpiStratification/EpiStratification.tsx +241 -0
- package/src/components/epi/EpiStratification/index.ts +1 -0
- package/src/components/epi/EpiTree/EpiTree.tsx +906 -0
- package/src/components/epi/EpiTree/index.ts +1 -0
- package/src/components/epi/EpiTreeDescription/EpiTreeDescription.tsx +71 -0
- package/src/components/epi/EpiTreeDescription/index.ts +1 -0
- package/src/components/epi/EpiUpload/EpiUpload.tsx +107 -0
- package/src/components/epi/EpiUpload/EpiUploadCaseResultTable.tsx +383 -0
- package/src/components/epi/EpiUpload/EpiUploadCreateCases.tsx +266 -0
- package/src/components/epi/EpiUpload/EpiUploadMapColumns.tsx +261 -0
- package/src/components/epi/EpiUpload/EpiUploadMapSequences.tsx +332 -0
- package/src/components/epi/EpiUpload/EpiUploadNavigation.tsx +52 -0
- package/src/components/epi/EpiUpload/EpiUploadSelectFile.tsx +285 -0
- package/src/components/epi/EpiUpload/EpiUploadSelectSequenceFiles.tsx +375 -0
- package/src/components/epi/EpiUpload/EpiUploadValidate.tsx +199 -0
- package/src/components/epi/EpiUpload/EpiUploadValidateNavigation.tsx +34 -0
- package/src/components/epi/EpiUpload/index.ts +1 -0
- package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialog.tsx +101 -0
- package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialogCaseAccessPolicy.tsx +160 -0
- package/src/components/epi/EpiUserRightsDialog/index.ts +1 -0
- package/src/components/epi/EpiWarning/EpiWarning.tsx +39 -0
- package/src/components/epi/EpiWarning/index.ts +1 -0
- package/src/components/epi/EpiWidget/EpiWidget.tsx +255 -0
- package/src/components/epi/EpiWidget/index.ts +1 -0
- package/src/components/epi/EpiWidgetHeaderIconButton/EpiWidgetHeaderIconButton.tsx +40 -0
- package/src/components/epi/EpiWidgetHeaderIconButton/index.ts +1 -0
- package/src/components/epi/EpiWidgetMenu/EpiWidgetMenu.tsx +56 -0
- package/src/components/epi/EpiWidgetMenu/index.ts +1 -0
- package/src/components/epi/EpiWidgetUnavailable/EpiWidgetUnavailable.tsx +51 -0
- package/src/components/epi/EpiWidgetUnavailable/index.ts +1 -0
- package/src/components/filters/BooleanFilterField/BooleanFilterField.tsx +26 -0
- package/src/components/filters/BooleanFilterField/index.ts +1 -0
- package/src/components/filters/DateFilterField/DateFilterField.tsx +23 -0
- package/src/components/filters/DateFilterField/index.ts +1 -0
- package/src/components/filters/GeoFilterField/GeoFilterField.tsx +32 -0
- package/src/components/filters/GeoFilterField/index.ts +1 -0
- package/src/components/filters/MultiSelectFilterField/MultiSelectFilterField.tsx +31 -0
- package/src/components/filters/MultiSelectFilterField/index.ts +1 -0
- package/src/components/filters/NumberRangeFilterField/NumberRangeFilterField.tsx +20 -0
- package/src/components/filters/NumberRangeFilterField/index.ts +1 -0
- package/src/components/filters/TextFilterField/TextFilterField.tsx +18 -0
- package/src/components/filters/TextFilterField/index.ts +1 -0
- package/src/components/form/fields/Autocomplete/Autocomplete.tsx +270 -0
- package/src/components/form/fields/Autocomplete/index.ts +1 -0
- package/src/components/form/fields/CheckboxGroup/CheckboxGroup.tsx +192 -0
- package/src/components/form/fields/CheckboxGroup/index.ts +1 -0
- package/src/components/form/fields/DatePicker/DatePicker.tsx +167 -0
- package/src/components/form/fields/DatePicker/index.ts +1 -0
- package/src/components/form/fields/DateRangePicker/DateRangePicker.tsx +359 -0
- package/src/components/form/fields/DateRangePicker/index.ts +1 -0
- package/src/components/form/fields/NumberField/NumberField.tsx +277 -0
- package/src/components/form/fields/NumberField/index.ts +1 -0
- package/src/components/form/fields/NumberRangeInput/NumberRangeInput.tsx +297 -0
- package/src/components/form/fields/NumberRangeInput/index.ts +1 -0
- package/src/components/form/fields/RadioGroup/RadioGroup.tsx +130 -0
- package/src/components/form/fields/RadioGroup/index.ts +1 -0
- package/src/components/form/fields/RichTextEditor/RichTextEditor.tsx +321 -0
- package/src/components/form/fields/RichTextEditor/RichTextEditorContent.tsx +34 -0
- package/src/components/form/fields/RichTextEditor/index.ts +2 -0
- package/src/components/form/fields/RichTextEditor/useRichTextEditorExtensions.ts +174 -0
- package/src/components/form/fields/Select/Select.tsx +219 -0
- package/src/components/form/fields/Select/index.ts +1 -0
- package/src/components/form/fields/Switch/Switch.tsx +116 -0
- package/src/components/form/fields/Switch/index.ts +1 -0
- package/src/components/form/fields/TextField/TextField.tsx +170 -0
- package/src/components/form/fields/TextField/index.ts +1 -0
- package/src/components/form/fields/ToggleButtonGroup/ToggleButtonGroup.tsx +118 -0
- package/src/components/form/fields/ToggleButtonGroup/index.ts +1 -0
- package/src/components/form/fields/TransferList/TransferList.tsx +360 -0
- package/src/components/form/fields/TransferList/index.ts +1 -0
- package/src/components/form/fields/UploadButton/UploadButton.tsx +157 -0
- package/src/components/form/helpers/FormFieldHelperText/FormFieldHelperText.tsx +68 -0
- package/src/components/form/helpers/FormFieldHelperText/index.ts +1 -0
- package/src/components/form/helpers/FormFieldLoadingIndicator/FormFieldLoadingIndicator.tsx +22 -0
- package/src/components/form/helpers/FormFieldLoadingIndicator/index.ts +1 -0
- package/src/components/form/helpers/GenericForm/GenericForm.tsx +187 -0
- package/src/components/form/helpers/GenericForm/index.ts +1 -0
- package/src/components/ui/ApplicationBar/ApplicationBar.tsx +74 -0
- package/src/components/ui/ApplicationBar/ApplicationBarActions.tsx +124 -0
- package/src/components/ui/ApplicationBar/ApplicationBarActionsFeedbackItem.tsx +102 -0
- package/src/components/ui/ApplicationBar/ApplicationBarActionsInfotem.tsx +60 -0
- package/src/components/ui/ApplicationBar/ApplicationBarActionsNotificationsItem.tsx +82 -0
- package/src/components/ui/ApplicationBar/ApplicationBarActionsOrganizationSwitcherItem.tsx +58 -0
- package/src/components/ui/ApplicationBar/ApplicationBarActionsOutagesItem.tsx +75 -0
- package/src/components/ui/ApplicationBar/ApplicationBarActionsUserItem.tsx +60 -0
- package/src/components/ui/ApplicationBar/ApplicationBarNavigationMenu.tsx +159 -0
- package/src/components/ui/ApplicationBar/InfoMenu.tsx +120 -0
- package/src/components/ui/ApplicationBar/UserMenu.tsx +208 -0
- package/src/components/ui/ApplicationBar/UserOrganizationAdminMenuItem.tsx +69 -0
- package/src/components/ui/ApplicationBar/UserOwnOrganizationMenuItem.tsx +54 -0
- package/src/components/ui/ApplicationBar/index.ts +1 -0
- package/src/components/ui/ApplicationFooter/ApplicationFooter.tsx +121 -0
- package/src/components/ui/ApplicationFooter/ApplicationFooterLink.tsx +48 -0
- package/src/components/ui/ApplicationFooter/ApplicationFooterLinkSection.tsx +56 -0
- package/src/components/ui/ApplicationFooter/index.ts +1 -0
- package/src/components/ui/AuthenticationWrapper/AuthenticationWrapper.tsx +208 -0
- package/src/components/ui/AuthenticationWrapper/index.ts +1 -0
- package/src/components/ui/AuthorizationWrapper/AuthorizationWrapper.tsx +75 -0
- package/src/components/ui/AuthorizationWrapper/index.ts +1 -0
- package/src/components/ui/Breadcrumbs/Breadcrumbs.tsx +92 -0
- package/src/components/ui/Breadcrumbs/index.ts +1 -0
- package/src/components/ui/Confirmation/Confirmation.tsx +10 -0
- package/src/components/ui/Confirmation/ConfirmationRender.tsx +81 -0
- package/src/components/ui/Confirmation/index.ts +2 -0
- package/src/components/ui/ConsentDialog/ConsentDialog.tsx +57 -0
- package/src/components/ui/ConsentDialog/index.ts +1 -0
- package/src/components/ui/CopyToClipboardButton/CopyToClipboardButton.tsx +94 -0
- package/src/components/ui/CopyToClipboardButton/index.ts +1 -0
- package/src/components/ui/Dialog/Dialog.tsx +196 -0
- package/src/components/ui/Dialog/index.ts +1 -0
- package/src/components/ui/FileSelector/FileSelector.tsx +358 -0
- package/src/components/ui/FileSelector/index.ts +1 -0
- package/src/components/ui/GenericErrorMessage/GenericErrorMessage.tsx +168 -0
- package/src/components/ui/GenericErrorMessage/index.ts +1 -0
- package/src/components/ui/HomePageTrends/HomePageTrendCard.tsx +132 -0
- package/src/components/ui/HomePageTrends/HomePageTrends.tsx +312 -0
- package/src/components/ui/HomePageTrends/index.ts +1 -0
- package/src/components/ui/LicensesDialog/LicensesDialog.tsx +231 -0
- package/src/components/ui/LicensesDialog/index.ts +1 -0
- package/src/components/ui/LinearProgressWithLabel/LinearProgressWithLabel.tsx +31 -0
- package/src/components/ui/LinearProgressWithLabel/index.ts +1 -0
- package/src/components/ui/LoadingIndicator/LoadingIndicator.tsx +11 -0
- package/src/components/ui/LoadingIndicator/index.ts +1 -0
- package/src/components/ui/MyPermissionsDialog/MyPermissionsDialog.tsx +95 -0
- package/src/components/ui/MyPermissionsDialog/index.ts +1 -0
- package/src/components/ui/NavLink/NavLink.tsx +47 -0
- package/src/components/ui/NavLink/index.ts +1 -0
- package/src/components/ui/NestedMenu/IconMenuItem.tsx +64 -0
- package/src/components/ui/NestedMenu/NestedDropdown.tsx +133 -0
- package/src/components/ui/NestedMenu/NestedMenuItem.tsx +250 -0
- package/src/components/ui/NestedMenu/index.ts +4 -0
- package/src/components/ui/NestedMenu/nestedMenuItemsFromObject.tsx +98 -0
- package/src/components/ui/Notifications/NotificationItem.tsx +70 -0
- package/src/components/ui/Notifications/NotificationsDrawer.tsx +161 -0
- package/src/components/ui/Notifications/NotificationsStack.tsx +45 -0
- package/src/components/ui/Notifications/index.ts +2 -0
- package/src/components/ui/OrganizationSwitcherDialog/OrganizationSwitcherDialog.tsx +204 -0
- package/src/components/ui/OrganizationSwitcherDialog/index.ts +1 -0
- package/src/components/ui/OutageList/OutageItem.tsx +48 -0
- package/src/components/ui/OutageList/OutageList.tsx +54 -0
- package/src/components/ui/OutageList/OutageSection.tsx +39 -0
- package/src/components/ui/OutageList/index.ts +1 -0
- package/src/components/ui/OutagesDialog/OutagesDialog.tsx +71 -0
- package/src/components/ui/OutagesDialog/index.ts +1 -0
- package/src/components/ui/PageContainer/PageContainer.tsx +207 -0
- package/src/components/ui/PageContainer/index.ts +1 -0
- package/src/components/ui/PanelSeparator/PanelResizeHandle.tsx +67 -0
- package/src/components/ui/PanelSeparator/index.ts +1 -0
- package/src/components/ui/ResponseHandler/ResponseHandler.tsx +79 -0
- package/src/components/ui/ResponseHandler/index.ts +1 -0
- package/src/components/ui/Sidebar/SidebarItem.tsx +138 -0
- package/src/components/ui/Sidebar/SidebarMenu.tsx +33 -0
- package/src/components/ui/Sidebar/SidebarMenuItem.tsx +61 -0
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- package/src/utils/AxiosUtil/AxiosUtil.ts +47 -0
- package/src/utils/AxiosUtil/index.ts +1 -0
- package/src/utils/CaseSelectionUtil/CaseSelectionUtil.ts +32 -0
- package/src/utils/CaseSelectionUtil/index.ts +1 -0
- package/src/utils/CaseSetUtil/CaseSetUtil.ts +13 -0
- package/src/utils/CaseSetUtil/index.ts +1 -0
- package/src/utils/CaseTypeUtil/CaseTypeUtil.ts +178 -0
- package/src/utils/CaseTypeUtil/index.ts +1 -0
- package/src/utils/CaseUtil/CaseUtil.ts +401 -0
- package/src/utils/CaseUtil/index.ts +1 -0
- package/src/utils/DashboardUtil/DashboardUtil.ts +46 -0
- package/src/utils/DashboardUtil/index.ts +1 -0
- package/src/utils/DataHookUtil/DataHookUtil.ts +137 -0
- package/src/utils/DataHookUtil/index.ts +1 -0
- package/src/utils/DataSetUtil/DataSetUtil.ts +70 -0
- package/src/utils/DataSetUtil/index.ts +1 -0
- package/src/utils/DataUtil/DataUtil.ts +84 -0
- package/src/utils/DataUtil/index.ts +1 -0
- package/src/utils/DownloadUtil/DownloadUtil.ts +237 -0
- package/src/utils/DownloadUtil/index.ts +1 -0
- package/src/utils/EffectiveRightsUtil/EffectiveRightsUtil.ts +142 -0
- package/src/utils/EffectiveRightsUtil/index.ts +1 -0
- package/src/utils/EpiCurveUtil/EpiCurveUtil.ts +180 -0
- package/src/utils/EpiCurveUtil/index.ts +1 -0
- package/src/utils/EpiFilterUtil/EpiFilterUtil.ts +232 -0
- package/src/utils/EpiFilterUtil/index.ts +1 -0
- package/src/utils/EpiLineListUtil/EpiLineListUtil.ts +15 -0
- package/src/utils/EpiLineListUtil/index.ts +1 -0
- package/src/utils/EpiMapUtil/EpiMapUtil.test.ts +54 -0
- package/src/utils/EpiMapUtil/EpiMapUtil.ts +80 -0
- package/src/utils/EpiMapUtil/index.ts +1 -0
- package/src/utils/EpiTreeUtil/EpiTreeUtil.test.ts +2467 -0
- package/src/utils/EpiTreeUtil/EpiTreeUtil.ts +1055 -0
- package/src/utils/EpiTreeUtil/index.ts +1 -0
- package/src/utils/EpiUploadUtil/EpiUploadUtil.ts +857 -0
- package/src/utils/EpiUploadUtil/index.ts +1 -0
- package/src/utils/FileUtil/FileUtil.ts +22 -0
- package/src/utils/FileUtil/index.ts +1 -0
- package/src/utils/FormUtil/FormUtil.test.ts +36 -0
- package/src/utils/FormUtil/FormUtil.ts +63 -0
- package/src/utils/FormUtil/index.ts +1 -0
- package/src/utils/MenuDataUtil/MenuDataUtil.ts +54 -0
- package/src/utils/MenuDataUtil/index.ts +1 -0
- package/src/utils/NewickUtil/NewickUtil.test.ts +187 -0
- package/src/utils/NewickUtil/NewickUtil.ts +69 -0
- package/src/utils/NewickUtil/index.ts +1 -0
- package/src/utils/NotificationUtil/NotificationUtil.ts +28 -0
- package/src/utils/NotificationUtil/index.ts +1 -0
- package/src/utils/NumberUtil/NumberUtil.test.ts +113 -0
- package/src/utils/NumberUtil/NumberUtil.ts +67 -0
- package/src/utils/NumberUtil/index.ts +1 -0
- package/src/utils/ObjectUtil/ObjectUtil.test.ts +43 -0
- package/src/utils/ObjectUtil/ObjectUtil.ts +28 -0
- package/src/utils/ObjectUtil/index.ts +1 -0
- package/src/utils/OutageUtil/OutageUtil.test.ts +108 -0
- package/src/utils/OutageUtil/OutageUtil.ts +81 -0
- package/src/utils/OutageUtil/index.ts +1 -0
- package/src/utils/QueryUtil/QueryUtil.test.ts +42 -0
- package/src/utils/QueryUtil/QueryUtil.ts +105 -0
- package/src/utils/QueryUtil/index.ts +1 -0
- package/src/utils/StringUtil/StringUtil.test.ts +61 -0
- package/src/utils/StringUtil/StringUtil.ts +91 -0
- package/src/utils/StringUtil/index.ts +1 -0
- package/src/utils/TableUtil/TableUtil.ts +665 -0
- package/src/utils/TableUtil/index.ts +1 -0
- package/src/utils/TestIdUtil/TestIdUtil.test.ts +12 -0
- package/src/utils/TestIdUtil/TestIdUtil.ts +13 -0
- package/src/utils/TestIdUtil/index.ts +1 -0
- package/src/utils/TimeUtil/TimeUtil.ts +38 -0
- package/src/utils/TimeUtil/index.ts +1 -0
- package/src/utils/UserManagerUtil/UserManagerUtil.test.ts +41 -0
- package/src/utils/UserManagerUtil/UserManagerUtil.ts +39 -0
- package/src/utils/UserManagerUtil/index.ts +1 -0
- package/src/utils/ValidationUtil/ValidationUtil.test.ts +61 -0
- package/src/utils/ValidationUtil/ValidationUtil.ts +56 -0
- package/src/utils/ValidationUtil/index.ts +1 -0
- package/dist/environment.d.ts +0 -54
- package/dist/index.d.ts +0 -16074
- /package/{dist → src/@types}/mui.d.ts +0 -0
- /package/{dist → src/@types}/ui.d.ts +0 -0
- /package/{dist → src/@types}/vite-env.d.ts +0 -0
- /package/{dist → src/@types}/yup.d.ts +0 -0
- /package/{dist → src}/locale/en.json +0 -0
- /package/{dist → src}/locale/nl.json +0 -0
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@@ -0,0 +1,401 @@
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import { isValid } from 'date-fns';
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import { t } from 'i18next';
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import type { ObjectSchema } from 'yup';
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import {
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object,
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string,
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} from 'yup';
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import type { UseQueryResult } from '@tanstack/react-query';
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import difference from 'lodash/difference';
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import intersection from 'lodash/intersection';
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import { CaseTypeUtil } from '../CaseTypeUtil';
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import { AbacUtil } from '../AbacUtil';
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import { QueryUtil } from '../QueryUtil';
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import type {
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CaseDataCollectionLink,
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CompleteCaseType,
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Organization,
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Case,
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Col,
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RefCol,
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} from '../../api';
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import {
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CaseApi,
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ColType,
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} from '../../api';
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import { ConfigManager } from '../../classes/managers/ConfigManager';
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import { NotificationManager } from '../../classes/managers/NotificationManager';
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import type { CaseTypeRowValue } from '../../models/epi';
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import type { FormFieldDefinition } from '../../models/form';
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import { FORM_FIELD_DEFINITION_TYPE } from '../../models/form';
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import { QUERY_KEY } from '../../models/query';
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import { EpiDataManager } from '../../classes/managers/EpiDataManager';
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export class CaseUtil {
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public static async applyDataCollectionLinks(kwArgs: { caseSetId?: string; caseSetDataCollectionIds: string[]; caseIds?: string[]; caseTypeId: string }): Promise<void> {
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const { caseSetId, caseSetDataCollectionIds, caseIds, caseTypeId } = kwArgs;
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if (!caseSetId && !caseIds) {
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throw new Error('Either caseSetId or caseIds must be provided');
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}
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const notificationKey = NotificationManager.instance.showNotification({
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message: t('Applying sharing to the cases'),
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isLoading: true,
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severity: 'info',
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});
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try {
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if (!caseSetDataCollectionIds.length) {
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NotificationManager.instance.fulfillNotification(notificationKey, t('Sharing has not been applied to the cases because the event is not shared.'), 'info');
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}
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let normalizedCaseIds: string[] = [];
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if (caseIds) {
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normalizedCaseIds = caseIds;
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} else {
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normalizedCaseIds = (await CaseApi.instance.caseSetMembersPostQuery({
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invert: false,
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key: 'case_set_id',
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type: 'UUID_SET',
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members: [caseSetId],
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})).data.map(x => x.case_id);
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}
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if (!normalizedCaseIds.length) {
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NotificationManager.instance.fulfillNotification(notificationKey, t('Sharing has not been applied to the cases because there are no cases in the event.'), 'info');
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}
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const dataLinksToAdd: CaseDataCollectionLink[] = [];
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const caseRights = (await CaseApi.instance.retrieveCaseRights({
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case_ids: normalizedCaseIds,
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case_type_id: caseTypeId,
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})).data;
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caseRights.forEach((caseRight) => {
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const caseId = caseRight.case_id;
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const caseMissingDataCollectionIds = difference(caseSetDataCollectionIds, caseRight.shared_in_data_collection_ids);
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if (!caseMissingDataCollectionIds.length) {
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return;
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}
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(caseRight.is_full_access ? caseMissingDataCollectionIds : intersection(caseRight.add_data_collection_ids, caseSetDataCollectionIds)).forEach((dataCollectionId) => {
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const dataLink: CaseDataCollectionLink = {
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case_id: caseId,
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data_collection_id: dataCollectionId,
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};
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dataLinksToAdd.push(dataLink);
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});
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});
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if (!dataLinksToAdd.length) {
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NotificationManager.instance.fulfillNotification(notificationKey, t('Sharing has not been applied to the cases because sharing has already been applied.'), 'info');
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return;
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}
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// Batch add the data collection links
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await CaseApi.instance.caseDataCollectionLinksPostSome(dataLinksToAdd);
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await QueryUtil.invalidateQueryKeys(QueryUtil.getQueryKeyDependencies([QUERY_KEY.CASE_DATA_COLLECTION_LINKS], true));
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NotificationManager.instance.fulfillNotification(notificationKey, t('Sharing has been applied to the cases'), 'success');
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} catch (_error) {
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NotificationManager.instance.fulfillNotification(notificationKey, t('Sharing could not be applied to selected cases due to an error.'), 'error');
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}
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}
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public static createFormFieldDefinitions(completeCaseType: CompleteCaseType, organizationsQueryResult: UseQueryResult<Organization[]>): FormFieldDefinition<Case['content']>[] {
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const cols = CaseTypeUtil.getCols(completeCaseType);
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const effectiveColumnAccessRights = AbacUtil.createEffectieveColumnAccessRights(Object.values(completeCaseType.case_type_access_abacs));
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return cols.reduce((acc, col) => {
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const hasAccess = effectiveColumnAccessRights.get(col.id)?.write;
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if (!hasAccess) {
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return acc;
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}
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115
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const refCol = completeCaseType.ref_cols[col.ref_col_id];
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switch (refCol.col_type) {
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118
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case ColType.TEXT:
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119
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case ColType.ID_SAMPLE:
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120
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case ColType.ID_CASE:
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121
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case ColType.ID_EVENT:
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122
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case ColType.ID_GENETIC_SEQUENCE:
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123
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case ColType.ID_PERSON:
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124
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case ColType.TIME_WEEK:
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case ColType.TIME_MONTH:
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126
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case ColType.TIME_QUARTER:
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127
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case ColType.TIME_YEAR:
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128
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case ColType.DECIMAL_0:
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129
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case ColType.DECIMAL_1:
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130
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case ColType.DECIMAL_2:
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131
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case ColType.DECIMAL_3:
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132
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case ColType.DECIMAL_4:
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case ColType.DECIMAL_5:
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case ColType.DECIMAL_6:
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acc.push({
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definition: FORM_FIELD_DEFINITION_TYPE.TEXTFIELD,
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name: col.id,
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label: col.label,
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139
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} as const satisfies FormFieldDefinition<Case['content']>);
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break;
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141
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case ColType.REGULAR_LANGUAGE:
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142
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try {
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143
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new RegExp(col.pattern);
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acc.push({
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definition: FORM_FIELD_DEFINITION_TYPE.TEXTFIELD,
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146
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+
name: col.id,
|
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147
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+
label: col.label,
|
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148
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} as const satisfies FormFieldDefinition<Case['content']>);
|
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149
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} catch (_error) {
|
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150
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acc.push({
|
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definition: FORM_FIELD_DEFINITION_TYPE.TEXTFIELD,
|
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152
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name: col.id,
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153
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label: col.label,
|
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154
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warningMessage: t`Unable to parse regular expression. You may enter text, but it's not guaranteed to be valid.`,
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155
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} as const satisfies FormFieldDefinition<Case['content']>);
|
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156
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}
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157
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break;
|
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158
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+
case ColType.NOMINAL:
|
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159
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+
case ColType.ORDINAL:
|
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160
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case ColType.INTERVAL:
|
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161
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if (EpiDataManager.instance.data.conceptsBySetId[refCol.concept_set_id]) {
|
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162
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acc.push({
|
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definition: FORM_FIELD_DEFINITION_TYPE.AUTOCOMPLETE,
|
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164
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+
name: col.id,
|
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165
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+
label: col.label,
|
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166
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options: EpiDataManager.instance.data.conceptsBySetId[refCol.concept_set_id].map(concept => ({
|
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167
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value: concept.id,
|
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168
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+
label: concept.name,
|
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169
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+
})),
|
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170
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} as const satisfies FormFieldDefinition<Case['content']>);
|
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171
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+
}
|
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172
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+
break;
|
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173
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+
case ColType.GEO_REGION:
|
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174
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+
if (EpiDataManager.instance.data.regionsByRegionSetId[refCol.region_set_id]) {
|
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175
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+
acc.push({
|
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definition: FORM_FIELD_DEFINITION_TYPE.AUTOCOMPLETE,
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177
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name: col.id,
|
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178
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label: col.label,
|
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179
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+
options: EpiDataManager.instance.data.regionsByRegionSetId[refCol.region_set_id].map(region => ({
|
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180
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+
value: region.id,
|
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181
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+
label: EpiDataManager.instance.data.regionSets[refCol.region_set_id].region_code_as_label ? region.code : region.name,
|
|
182
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+
})),
|
|
183
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+
} as const satisfies FormFieldDefinition<Case['content']>);
|
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184
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+
}
|
|
185
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+
break;
|
|
186
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+
case ColType.ORGANIZATION:
|
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187
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+
acc.push({
|
|
188
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+
definition: FORM_FIELD_DEFINITION_TYPE.AUTOCOMPLETE,
|
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189
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+
name: col.id,
|
|
190
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+
label: col.label,
|
|
191
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+
loading: organizationsQueryResult.isLoading,
|
|
192
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+
options: (organizationsQueryResult.data ?? []).map(organization => ({
|
|
193
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+
value: organization.id,
|
|
194
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+
label: organization.name,
|
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195
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+
})),
|
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196
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+
} as const satisfies FormFieldDefinition<Case['content']>);
|
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197
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+
break;
|
|
198
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+
default:
|
|
199
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+
break;
|
|
200
|
+
}
|
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201
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+
|
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202
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+
return acc;
|
|
203
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+
}, [] as FormFieldDefinition<Case['content']>[]);
|
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204
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+
}
|
|
205
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+
|
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206
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+
public static createYupSchema(completeCaseType: CompleteCaseType): ObjectSchema<{ [key: string]: string }> {
|
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207
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+
const effectiveColumnAccessRights = AbacUtil.createEffectieveColumnAccessRights(Object.values(completeCaseType.case_type_access_abacs));
|
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208
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+
|
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209
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+
return CaseTypeUtil.getCols(completeCaseType).reduce((s, col) => {
|
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210
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const hasAccess = effectiveColumnAccessRights.get(col.id)?.write;
|
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211
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+
if (!hasAccess) {
|
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212
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return s;
|
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213
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+
}
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214
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+
|
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215
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+
const refCol = completeCaseType.ref_cols[col.ref_col_id];
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216
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+
switch (refCol.col_type) {
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217
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+
case ColType.TEXT:
|
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218
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return s.concat(object().shape({
|
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219
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[col.id]: string().nullable().extendedAlphaNumeric().max(65535).transform((_val: unknown, orig: string) => orig || null),
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220
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+
}));
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221
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+
case ColType.ID_SAMPLE:
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222
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+
case ColType.ID_CASE:
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223
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+
case ColType.ID_EVENT:
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224
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+
case ColType.ID_GENETIC_SEQUENCE:
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225
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+
case ColType.ID_PERSON:
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226
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+
return s.concat(object().shape({
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227
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+
[col.id]: string().nullable().extendedAlphaNumeric().max(255).transform((_val: unknown, orig: string) => orig || null),
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228
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+
}));
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229
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+
case ColType.NOMINAL:
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230
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+
case ColType.ORDINAL:
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231
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+
case ColType.INTERVAL:
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232
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+
case ColType.GEO_REGION:
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233
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+
case ColType.ORGANIZATION:
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234
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return s.concat(object().shape({
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235
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[col.id]: string().nullable().uuid4().transform((_val: unknown, orig: string) => orig || null),
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236
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+
}));
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237
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+
case ColType.GEO_LATLON:
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238
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return s.concat(object().shape({
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239
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+
[col.id]: string().nullable().latLong().transform((_val: unknown, orig: string) => orig || null),
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240
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+
}));
|
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241
|
+
case ColType.DECIMAL_0:
|
|
242
|
+
return s.concat(object().shape({
|
|
243
|
+
[col.id]: string().nullable().decimal0().transform((_val: unknown, orig: string) => orig || null),
|
|
244
|
+
}));
|
|
245
|
+
case ColType.DECIMAL_1:
|
|
246
|
+
return s.concat(object().shape({
|
|
247
|
+
[col.id]: string().nullable().decimal1().transform((_val: unknown, orig: string) => orig ?? null),
|
|
248
|
+
}));
|
|
249
|
+
case ColType.DECIMAL_2:
|
|
250
|
+
return s.concat(object().shape({
|
|
251
|
+
[col.id]: string().nullable().decimal2().transform((_val: unknown, orig: string) => orig ?? null),
|
|
252
|
+
}));
|
|
253
|
+
case ColType.DECIMAL_3:
|
|
254
|
+
return s.concat(object().shape({
|
|
255
|
+
[col.id]: string().nullable().decimal3().transform((_val: unknown, orig: string) => orig ?? null),
|
|
256
|
+
}));
|
|
257
|
+
case ColType.DECIMAL_4:
|
|
258
|
+
return s.concat(object().shape({
|
|
259
|
+
[col.id]: string().nullable().decimal4().transform((_val: unknown, orig: string) => orig ?? null),
|
|
260
|
+
}));
|
|
261
|
+
case ColType.DECIMAL_5:
|
|
262
|
+
return s.concat(object().shape({
|
|
263
|
+
[col.id]: string().nullable().decimal5().transform((_val: unknown, orig: string) => orig ?? null),
|
|
264
|
+
}));
|
|
265
|
+
case ColType.DECIMAL_6:
|
|
266
|
+
return s.concat(object().shape({
|
|
267
|
+
[col.id]: string().nullable().decimal6().transform((_val: unknown, orig: string) => orig ?? null),
|
|
268
|
+
}));
|
|
269
|
+
case ColType.TIME_DAY:
|
|
270
|
+
return s.concat(object().shape({
|
|
271
|
+
[col.id]: string().nullable().transform((_val: unknown, orig: Date) => isValid(orig) ? orig.toISOString() : null),
|
|
272
|
+
}));
|
|
273
|
+
case ColType.TIME_WEEK:
|
|
274
|
+
return s.concat(object().shape({
|
|
275
|
+
[col.id]: string().nullable().timeWeek().transform((_val: unknown, orig: string) => orig || null),
|
|
276
|
+
}));
|
|
277
|
+
case ColType.TIME_MONTH:
|
|
278
|
+
return s.concat(object().shape({
|
|
279
|
+
[col.id]: string().nullable().timeMonth().transform((_val: unknown, orig: string) => orig || null),
|
|
280
|
+
}));
|
|
281
|
+
case ColType.TIME_QUARTER:
|
|
282
|
+
return s.concat(object().shape({
|
|
283
|
+
[col.id]: string().nullable().timeQuarter().transform((_val: unknown, orig: string) => orig || null),
|
|
284
|
+
}));
|
|
285
|
+
case ColType.TIME_YEAR:
|
|
286
|
+
return s.concat(object().shape({
|
|
287
|
+
[col.id]: string().nullable().timeYear().transform((_val: unknown, orig: string) => orig || null),
|
|
288
|
+
}));
|
|
289
|
+
case ColType.REGULAR_LANGUAGE:
|
|
290
|
+
try {
|
|
291
|
+
return s.concat(object().shape({
|
|
292
|
+
[col.id]: string().nullable().matches(new RegExp(col.pattern), t('Invalid value for pattern "{{pattern}}"', { pattern: col.pattern })),
|
|
293
|
+
})).transform((_val: unknown, orig: string) => orig || null);
|
|
294
|
+
} catch (_error) {
|
|
295
|
+
return s.concat(object().shape({
|
|
296
|
+
[col.id]: string().nullable().max(col.max_length ?? 65535),
|
|
297
|
+
})).transform((_val: unknown, orig: string) => orig || null);
|
|
298
|
+
}
|
|
299
|
+
case ColType.GENETIC_SEQUENCE:
|
|
300
|
+
case ColType.GENETIC_DISTANCE:
|
|
301
|
+
return s;
|
|
302
|
+
default:
|
|
303
|
+
console.error(`Unknown column type: ${refCol.col_type}`);
|
|
304
|
+
return s;
|
|
305
|
+
}
|
|
306
|
+
}, object({}));
|
|
307
|
+
}
|
|
308
|
+
|
|
309
|
+
public static getRowValue(content: { [key: string]: string }, col: Col, completeCaseType: CompleteCaseType, machineReadable = false): CaseTypeRowValue {
|
|
310
|
+
const refCol = completeCaseType.ref_cols[col.ref_col_id];
|
|
311
|
+
const hasMappedValue = refCol.col_type === ColType.ORGANIZATION || refCol.region_set_id || refCol.concept_set_id;
|
|
312
|
+
if (hasMappedValue) {
|
|
313
|
+
return CaseUtil.getMappedValue(content[col.id], col, completeCaseType, machineReadable);
|
|
314
|
+
}
|
|
315
|
+
|
|
316
|
+
const { DATA_MISSING_CHARACTER } = ConfigManager.instance.config.epi;
|
|
317
|
+
const dataMissingCharacter = machineReadable ? '' : DATA_MISSING_CHARACTER;
|
|
318
|
+
|
|
319
|
+
const rowValue: CaseTypeRowValue = {
|
|
320
|
+
raw: content?.[col.id],
|
|
321
|
+
isMissing: !content[col.id],
|
|
322
|
+
short: content[col.id] ?? dataMissingCharacter,
|
|
323
|
+
long: content[col.id] ?? dataMissingCharacter,
|
|
324
|
+
full: content[col.id] ?? t('{{dataMissingCharacter}} (missing)', { dataMissingCharacter }),
|
|
325
|
+
};
|
|
326
|
+
return rowValue;
|
|
327
|
+
}
|
|
328
|
+
|
|
329
|
+
public static getMissingRowValue(raw: string, machineReadable = true): CaseTypeRowValue {
|
|
330
|
+
const { DATA_MISSING_CHARACTER } = ConfigManager.instance.config.epi;
|
|
331
|
+
const dataMissingCharacter = machineReadable ? '' : DATA_MISSING_CHARACTER;
|
|
332
|
+
|
|
333
|
+
return {
|
|
334
|
+
raw,
|
|
335
|
+
isMissing: true,
|
|
336
|
+
full: t('{{dataMissingCharacter}} (missing)', { dataMissingCharacter }),
|
|
337
|
+
long: dataMissingCharacter,
|
|
338
|
+
short: dataMissingCharacter,
|
|
339
|
+
};
|
|
340
|
+
}
|
|
341
|
+
|
|
342
|
+
public static getMappedValue(raw: string, col: Col, completeCaseType: CompleteCaseType, machineReadable = false): CaseTypeRowValue {
|
|
343
|
+
if (!raw) {
|
|
344
|
+
return CaseUtil.getMissingRowValue(raw, machineReadable);
|
|
345
|
+
}
|
|
346
|
+
|
|
347
|
+
const refCol = completeCaseType.ref_cols[col.ref_col_id];
|
|
348
|
+
|
|
349
|
+
if (refCol.col_type === ColType.ORGANIZATION) {
|
|
350
|
+
return CaseUtil.getOrganizationMappedValue(raw);
|
|
351
|
+
} else if (refCol.region_set_id) {
|
|
352
|
+
return CaseUtil.getRegionMappedValue(refCol, raw);
|
|
353
|
+
} else if (refCol.concept_set_id) {
|
|
354
|
+
return CaseUtil.getConceptMappedValue(raw);
|
|
355
|
+
}
|
|
356
|
+
return CaseUtil.getMissingRowValue(raw, machineReadable);
|
|
357
|
+
}
|
|
358
|
+
|
|
359
|
+
private static getOrganizationMappedValue(raw: string): CaseTypeRowValue {
|
|
360
|
+
const organization = EpiDataManager.instance.data?.organizationsById?.[raw];
|
|
361
|
+
if (!organization) {
|
|
362
|
+
return CaseUtil.getMissingRowValue(raw);
|
|
363
|
+
}
|
|
364
|
+
return {
|
|
365
|
+
raw,
|
|
366
|
+
isMissing: false,
|
|
367
|
+
short: organization.name,
|
|
368
|
+
long: organization.name,
|
|
369
|
+
full: organization.name,
|
|
370
|
+
};
|
|
371
|
+
}
|
|
372
|
+
|
|
373
|
+
private static getRegionMappedValue(refCol: RefCol, raw: string): CaseTypeRowValue {
|
|
374
|
+
const regionSet = EpiDataManager.instance.data.regionSets[refCol.region_set_id];
|
|
375
|
+
const region = EpiDataManager.instance.data.regionsById?.[raw];
|
|
376
|
+
if (!region) {
|
|
377
|
+
return CaseUtil.getMissingRowValue(raw);
|
|
378
|
+
}
|
|
379
|
+
return {
|
|
380
|
+
raw,
|
|
381
|
+
isMissing: false,
|
|
382
|
+
full: regionSet.region_code_as_label ? region.code : region.name,
|
|
383
|
+
long: regionSet.region_code_as_label ? region.code : region.name,
|
|
384
|
+
short: regionSet.region_code_as_label ? region.code : region.name,
|
|
385
|
+
};
|
|
386
|
+
}
|
|
387
|
+
|
|
388
|
+
private static getConceptMappedValue(raw: string): CaseTypeRowValue {
|
|
389
|
+
const concept = EpiDataManager.instance.data.conceptsById?.[raw];
|
|
390
|
+
if (!concept) {
|
|
391
|
+
return CaseUtil.getMissingRowValue(raw);
|
|
392
|
+
}
|
|
393
|
+
return {
|
|
394
|
+
raw,
|
|
395
|
+
isMissing: false,
|
|
396
|
+
full: `${concept.code} (${concept.name})`,
|
|
397
|
+
short: concept.code,
|
|
398
|
+
long: concept.name,
|
|
399
|
+
};
|
|
400
|
+
}
|
|
401
|
+
}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
export * from './CaseUtil';
|
|
@@ -0,0 +1,46 @@
|
|
|
1
|
+
import intersection from 'lodash/intersection';
|
|
2
|
+
|
|
3
|
+
import { ConfigManager } from '../../classes/managers/ConfigManager';
|
|
4
|
+
import type {
|
|
5
|
+
EpiDashboardLayoutUserConfig,
|
|
6
|
+
EpiDashboardLayoutConfig,
|
|
7
|
+
EpiDashboardLayout,
|
|
8
|
+
} from '../../models/epi';
|
|
9
|
+
import { EPI_ZONE } from '../../models/epi';
|
|
10
|
+
|
|
11
|
+
|
|
12
|
+
export class DashboardUtil {
|
|
13
|
+
public static readonly dashboardLayoutStorageKey = 'GENEPIX-EpiDashboard-Layout-v1.3';
|
|
14
|
+
|
|
15
|
+
public static isSingleWidget(userConfig: EpiDashboardLayoutUserConfig, zone: EPI_ZONE): boolean {
|
|
16
|
+
const enabledZones = DashboardUtil.getEnabledZones(userConfig);
|
|
17
|
+
return enabledZones.length === 1 && enabledZones[0] === zone;
|
|
18
|
+
}
|
|
19
|
+
|
|
20
|
+
public static getEnabledZones(userConfig: EpiDashboardLayoutUserConfig): EPI_ZONE[] {
|
|
21
|
+
return Object.entries(userConfig.zones).filter(([_name, value]) => value).map(([name]) => name) as EPI_ZONE[];
|
|
22
|
+
}
|
|
23
|
+
|
|
24
|
+
public static getDashboardLayoutConfig(userConfig: EpiDashboardLayoutUserConfig): EpiDashboardLayoutConfig {
|
|
25
|
+
const enabledZones = DashboardUtil.getEnabledZones(userConfig);
|
|
26
|
+
return ConfigManager.instance.config.epiDashboard.LAYOUTS.find(epiDashboardLayout => epiDashboardLayout.zones.length === enabledZones.length && intersection(enabledZones, epiDashboardLayout.zones).length === enabledZones.length);
|
|
27
|
+
}
|
|
28
|
+
|
|
29
|
+
public static getDashboardLayout(userConfig: EpiDashboardLayoutUserConfig): EpiDashboardLayout {
|
|
30
|
+
const layoutConfig = DashboardUtil.getDashboardLayoutConfig(userConfig);
|
|
31
|
+
|
|
32
|
+
return layoutConfig?.layouts?.[userConfig.arrangement] ?? layoutConfig?.layouts?.[0];
|
|
33
|
+
}
|
|
34
|
+
|
|
35
|
+
public static createDashboardLayoutUserConfigInitialState(): EpiDashboardLayoutUserConfig {
|
|
36
|
+
return {
|
|
37
|
+
arrangement: 0,
|
|
38
|
+
zones: {
|
|
39
|
+
[EPI_ZONE.EPI_CURVE]: true,
|
|
40
|
+
[EPI_ZONE.LINE_LIST]: true,
|
|
41
|
+
[EPI_ZONE.MAP]: true,
|
|
42
|
+
[EPI_ZONE.TREE]: true,
|
|
43
|
+
},
|
|
44
|
+
};
|
|
45
|
+
}
|
|
46
|
+
}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
export * from './DashboardUtil';
|
|
@@ -0,0 +1,137 @@
|
|
|
1
|
+
import type { UseQueryResult } from '@tanstack/react-query';
|
|
2
|
+
|
|
3
|
+
import type {
|
|
4
|
+
Loadable,
|
|
5
|
+
UseMap,
|
|
6
|
+
UseOptions,
|
|
7
|
+
UseNameFactory,
|
|
8
|
+
} from '../../models/dataHooks';
|
|
9
|
+
import { StringUtil } from '../StringUtil';
|
|
10
|
+
|
|
11
|
+
export class DataHookUtil {
|
|
12
|
+
private static isResponse<TValue>(response: unknown): response is UseQueryResult<TValue> {
|
|
13
|
+
if (!response) {
|
|
14
|
+
return false;
|
|
15
|
+
}
|
|
16
|
+
if (typeof response !== 'object') {
|
|
17
|
+
return false;
|
|
18
|
+
}
|
|
19
|
+
if (!('isLoading' in response)) {
|
|
20
|
+
return false;
|
|
21
|
+
}
|
|
22
|
+
return true;
|
|
23
|
+
}
|
|
24
|
+
|
|
25
|
+
public static createUseMapDataHook<TValue>(
|
|
26
|
+
response: UseQueryResult<TValue[]> | TValue[],
|
|
27
|
+
getId: (item: TValue) => string,
|
|
28
|
+
loadables: Loadable[] = [],
|
|
29
|
+
): UseMap<TValue> {
|
|
30
|
+
if (DataHookUtil.isResponse(response) && response.error) {
|
|
31
|
+
return {
|
|
32
|
+
isLoading: false,
|
|
33
|
+
error: response.error,
|
|
34
|
+
map: new Map(),
|
|
35
|
+
};
|
|
36
|
+
}
|
|
37
|
+
if (loadables?.some(obj => obj.error)) {
|
|
38
|
+
return {
|
|
39
|
+
isLoading: false,
|
|
40
|
+
error: loadables.find(obj => obj.error).error,
|
|
41
|
+
map: new Map(),
|
|
42
|
+
};
|
|
43
|
+
}
|
|
44
|
+
|
|
45
|
+
const isLoadings = [DataHookUtil.isResponse(response) ? (response.isLoading || response.isPending || response.isFetching) : false];
|
|
46
|
+
if (loadables) {
|
|
47
|
+
isLoadings.push(...loadables.map(obj => obj.isLoading));
|
|
48
|
+
}
|
|
49
|
+
const isLoading = isLoadings.some(x => x);
|
|
50
|
+
let map: Map<string, TValue> = new Map();
|
|
51
|
+
if (!isLoading) {
|
|
52
|
+
const items = DataHookUtil.isResponse(response) ? response.data : response;
|
|
53
|
+
map = new Map(items?.map(item => [getId(item), item]));
|
|
54
|
+
}
|
|
55
|
+
|
|
56
|
+
return {
|
|
57
|
+
isLoading,
|
|
58
|
+
map,
|
|
59
|
+
error: null,
|
|
60
|
+
};
|
|
61
|
+
}
|
|
62
|
+
|
|
63
|
+
public static createUseOptionsDataHook<TValue>(
|
|
64
|
+
response: UseQueryResult<TValue[]> | TValue[],
|
|
65
|
+
getId: (item: TValue) => string,
|
|
66
|
+
createLabel: (item: TValue) => string,
|
|
67
|
+
loadables?: Loadable[],
|
|
68
|
+
sortComperator?: (a: string, b: string) => number,
|
|
69
|
+
): UseOptions<string> {
|
|
70
|
+
if (DataHookUtil.isResponse(response) && response.error) {
|
|
71
|
+
return {
|
|
72
|
+
isLoading: false,
|
|
73
|
+
error: response.error,
|
|
74
|
+
options: [],
|
|
75
|
+
};
|
|
76
|
+
}
|
|
77
|
+
if (loadables?.some(obj => obj.error)) {
|
|
78
|
+
return {
|
|
79
|
+
isLoading: false,
|
|
80
|
+
error: loadables.find(obj => obj.error).error,
|
|
81
|
+
options: [],
|
|
82
|
+
};
|
|
83
|
+
}
|
|
84
|
+
|
|
85
|
+
const isLoading = [
|
|
86
|
+
DataHookUtil.isResponse(response) ? (response.isLoading || response.isPending) : false,
|
|
87
|
+
...loadables?.map(obj => obj.isLoading) ?? [],
|
|
88
|
+
].some(Boolean);
|
|
89
|
+
const sort = sortComperator ?? StringUtil.sortComperator;
|
|
90
|
+
|
|
91
|
+
let options: {
|
|
92
|
+
value: string;
|
|
93
|
+
label: string;
|
|
94
|
+
}[] = [];
|
|
95
|
+
if (!isLoading) {
|
|
96
|
+
const items = DataHookUtil.isResponse(response) ? response.data : response;
|
|
97
|
+
options = items?.map(item => ({ value: getId(item), label: createLabel(item) })).sort((a, b) => {
|
|
98
|
+
return sort(a.label, b.label);
|
|
99
|
+
}) ?? [];
|
|
100
|
+
}
|
|
101
|
+
|
|
102
|
+
return {
|
|
103
|
+
isLoading,
|
|
104
|
+
options,
|
|
105
|
+
error: null,
|
|
106
|
+
};
|
|
107
|
+
}
|
|
108
|
+
|
|
109
|
+
public static createUseNameFactoryHook<TValue>(
|
|
110
|
+
getName: (item: TValue) => string,
|
|
111
|
+
loadables?: Loadable[],
|
|
112
|
+
): UseNameFactory<TValue> {
|
|
113
|
+
if (loadables?.some(obj => obj.error)) {
|
|
114
|
+
return {
|
|
115
|
+
isLoading: false,
|
|
116
|
+
error: loadables.find(obj => obj.error).error,
|
|
117
|
+
getName,
|
|
118
|
+
};
|
|
119
|
+
}
|
|
120
|
+
|
|
121
|
+
const isLoading = loadables ? loadables.some(obj => obj.isLoading) : false;
|
|
122
|
+
if (isLoading) {
|
|
123
|
+
return {
|
|
124
|
+
isLoading,
|
|
125
|
+
error: null,
|
|
126
|
+
getName: () => '',
|
|
127
|
+
};
|
|
128
|
+
}
|
|
129
|
+
|
|
130
|
+
return {
|
|
131
|
+
isLoading,
|
|
132
|
+
error: null,
|
|
133
|
+
getName,
|
|
134
|
+
};
|
|
135
|
+
|
|
136
|
+
}
|
|
137
|
+
}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
export * from './DataHookUtil';
|
|
@@ -0,0 +1,70 @@
|
|
|
1
|
+
import intersection from 'lodash/intersection';
|
|
2
|
+
|
|
3
|
+
export class DataSetUtil {
|
|
4
|
+
public static getMappedSetMembers<T>(kwArgs: { items: T[]; setProperty: keyof T & string; memberProperty: keyof T & string }): Map<string, string[]> {
|
|
5
|
+
const { items, setProperty, memberProperty } = kwArgs;
|
|
6
|
+
const mappedSets = new Map<string, string[]>();
|
|
7
|
+
items.forEach(member => {
|
|
8
|
+
if (!mappedSets.has(member[setProperty] as string)) {
|
|
9
|
+
mappedSets.set(member[setProperty] as string, []);
|
|
10
|
+
}
|
|
11
|
+
mappedSets.get(member[setProperty] as string)?.push(member[memberProperty] as string);
|
|
12
|
+
});
|
|
13
|
+
return mappedSets;
|
|
14
|
+
}
|
|
15
|
+
|
|
16
|
+
public static getCategorizedSetMembers(kwArgs: { mappedSetMembers: Map<string, string[]>; parentSetId: string; parentMemberIds: string[]; childMemberIds: string[] }): { setIds: string[]; categorizedMemberIds: string[]; uncategorizedMemberIds: string[] } {
|
|
17
|
+
const { mappedSetMembers, parentSetId, parentMemberIds, childMemberIds } = kwArgs;
|
|
18
|
+
const intersectedMemberIds = intersection(parentMemberIds, childMemberIds);
|
|
19
|
+
let uncategorizedMemberIds: string[] = [];
|
|
20
|
+
const categorizedMemberIds: string[] = [];
|
|
21
|
+
|
|
22
|
+
const setIds: string[] = [];
|
|
23
|
+
if (intersectedMemberIds.length) {
|
|
24
|
+
if (intersectedMemberIds.length === parentMemberIds.length && intersectedMemberIds.length === childMemberIds.length) {
|
|
25
|
+
// all members are in the parent set and child set, so we can use the parent set id (optimization)
|
|
26
|
+
setIds.push(parentSetId);
|
|
27
|
+
categorizedMemberIds.push(...intersectedMemberIds);
|
|
28
|
+
} else {
|
|
29
|
+
mappedSetMembers.forEach((memberIds, setId) => {
|
|
30
|
+
const setIntersectedMemberIds = intersection(memberIds, intersectedMemberIds);
|
|
31
|
+
if (setIntersectedMemberIds.length === memberIds.length) {
|
|
32
|
+
setIds.push(setId);
|
|
33
|
+
categorizedMemberIds.push(...setIntersectedMemberIds);
|
|
34
|
+
}
|
|
35
|
+
});
|
|
36
|
+
uncategorizedMemberIds = intersectedMemberIds.filter(id => !categorizedMemberIds.includes(id));
|
|
37
|
+
}
|
|
38
|
+
}
|
|
39
|
+
|
|
40
|
+
// sanitize setIds (remove duplicates, larger sets containing smaller sets)
|
|
41
|
+
const sanitizedSetIds: string[] = [];
|
|
42
|
+
if (setIds.length <= 1) {
|
|
43
|
+
sanitizedSetIds.push(...setIds);
|
|
44
|
+
} else {
|
|
45
|
+
const sortedSetsIdsBySize = Array.from(mappedSetMembers.entries()).filter(([setId]) => setIds.includes(setId)).sort((a, b) => b[1].length - a[1].length).map(x => x[0]);
|
|
46
|
+
setIds.forEach(setId => {
|
|
47
|
+
const setIdIndex = sortedSetsIdsBySize.indexOf(setId);
|
|
48
|
+
for (let i = 0; i < setIdIndex; i++) {
|
|
49
|
+
const otherSetId = sortedSetsIdsBySize[i];
|
|
50
|
+
if (mappedSetMembers.get(otherSetId)?.length && mappedSetMembers.get(setId)?.length) {
|
|
51
|
+
const otherSetMemberIds = mappedSetMembers.get(otherSetId) || [];
|
|
52
|
+
const setMemberIds = mappedSetMembers.get(setId) || [];
|
|
53
|
+
if (intersection(otherSetMemberIds, setMemberIds).length === setMemberIds.length) {
|
|
54
|
+
// other set contains current set, do not add current set
|
|
55
|
+
return;
|
|
56
|
+
}
|
|
57
|
+
}
|
|
58
|
+
}
|
|
59
|
+
sanitizedSetIds.push(setId);
|
|
60
|
+
});
|
|
61
|
+
}
|
|
62
|
+
|
|
63
|
+
return {
|
|
64
|
+
setIds: sanitizedSetIds,
|
|
65
|
+
uncategorizedMemberIds,
|
|
66
|
+
categorizedMemberIds,
|
|
67
|
+
};
|
|
68
|
+
|
|
69
|
+
}
|
|
70
|
+
}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
export * from './DataSetUtil';
|