@gen-epix/ui 1.14.4 → 1.15.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +3 -3
- package/dist/index.js +27287 -27948
- package/package.json +94 -84
- package/src/@types/environment.d.ts +54 -0
- package/src/api/api.ts +43576 -0
- package/src/api/base.ts +111 -0
- package/src/api/common.ts +168 -0
- package/src/api/configuration.ts +118 -0
- package/src/api/index.ts +20 -0
- package/src/assets/icons/CollectionIcon.svg +1 -0
- package/src/assets/icons/DnaIcon.svg +1 -0
- package/src/assets/icons/VirusIcon.svg +1 -0
- package/src/assets/logo/logo-rijksoverheid.svg +42 -0
- package/src/assets/logo/logo-rivm.svg +6 -0
- package/src/classes/Subject/Subject.ts +26 -0
- package/src/classes/Subject/index.ts +1 -0
- package/src/classes/TableEventBus/TableEventBus.ts +14 -0
- package/src/classes/TableEventBus/index.ts +1 -0
- package/src/classes/abstracts/EventBusAbstract/EventBusAbstract.ts +37 -0
- package/src/classes/abstracts/EventBusAbstract/index.ts +1 -0
- package/src/classes/abstracts/FilterAbstract/FilterAbstract.ts +54 -0
- package/src/classes/abstracts/FilterAbstract/index.ts +1 -0
- package/src/classes/abstracts/SubscribableAbstract/SubscribableAbstract.ts +20 -0
- package/src/classes/abstracts/SubscribableAbstract/index.ts +1 -0
- package/src/classes/errors/UploadError.ts +11 -0
- package/src/classes/errors/index.ts +1 -0
- package/src/classes/filters/BooleanFilter.ts +31 -0
- package/src/classes/filters/DateFilter.ts +133 -0
- package/src/classes/filters/GeoFilter.ts +60 -0
- package/src/classes/filters/MultiSelectFilter.ts +70 -0
- package/src/classes/filters/NumberRangeFilter.ts +82 -0
- package/src/classes/filters/SelectionFilter.ts +25 -0
- package/src/classes/filters/TextFilter.ts +36 -0
- package/src/classes/filters/TreeFilter.ts +22 -0
- package/src/classes/managers/AuthenticationManager/AuthenticationManager.ts +94 -0
- package/src/classes/managers/AuthenticationManager/index.ts +1 -0
- package/src/classes/managers/AuthorizationManager/AuthorizationManager.ts +70 -0
- package/src/classes/managers/AuthorizationManager/index.ts +1 -0
- package/src/classes/managers/BackendVersionManager/BackendVersionManager.ts +23 -0
- package/src/classes/managers/BackendVersionManager/index.ts +1 -0
- package/src/classes/managers/BreadcrumbManager/BreadcrumbManager.ts +30 -0
- package/src/classes/managers/BreadcrumbManager/index.ts +1 -0
- package/src/classes/managers/ConfigManager/ConfigManager.ts +31 -0
- package/src/classes/managers/ConfigManager/index.ts +1 -0
- package/src/classes/managers/DevicePixelRatioManager/DevicePixelRatioManager.ts +27 -0
- package/src/classes/managers/DevicePixelRatioManager/index.ts +1 -0
- package/src/classes/managers/EmotionCacheManager/EmotionCacheManager.ts +27 -0
- package/src/classes/managers/EmotionCacheManager/index.ts +1 -0
- package/src/classes/managers/EpiDataManager/EpiDataManager.ts +196 -0
- package/src/classes/managers/EpiDataManager/index.ts +1 -0
- package/src/classes/managers/EpiEventBusManager/EpiEventBusManager.ts +61 -0
- package/src/classes/managers/EpiEventBusManager/index.ts +1 -0
- package/src/classes/managers/EpiHighlightingManager/EpiHighlightingManager.ts +32 -0
- package/src/classes/managers/EpiHighlightingManager/index.ts +1 -0
- package/src/classes/managers/EpiLineListCaseSetMembersManager/EpiListsCaseSetMembersManager.ts +118 -0
- package/src/classes/managers/EpiLineListCaseSetMembersManager/index.ts +1 -0
- package/src/classes/managers/FeatureFlagsManager/FeatureFlagsManager.ts +30 -0
- package/src/classes/managers/FeatureFlagsManager/index.ts +1 -0
- package/src/classes/managers/I18nManager/I18nManager.ts +105 -0
- package/src/classes/managers/I18nManager/index.ts +1 -0
- package/src/classes/managers/InactivityManager/InactivityManager.ts +119 -0
- package/src/classes/managers/InactivityManager/index.ts +1 -0
- package/src/classes/managers/KeyboardShortcutManager/KeyboardShortcutManager.ts +78 -0
- package/src/classes/managers/KeyboardShortcutManager/index.ts +1 -0
- package/src/classes/managers/LogManager/LogManager.ts +151 -0
- package/src/classes/managers/LogManager/index.ts +1 -0
- package/src/classes/managers/NavigationHistoryManager/NavigationHistoryManager.ts +16 -0
- package/src/classes/managers/NavigationHistoryManager/index.ts +1 -0
- package/src/classes/managers/NotificationManager/NotificationManager.ts +104 -0
- package/src/classes/managers/NotificationManager/index.ts +1 -0
- package/src/classes/managers/PageEventBusManager/PageEventBusManager.ts +116 -0
- package/src/classes/managers/PageEventBusManager/index.ts +1 -0
- package/src/classes/managers/QueryClientManager/QueryClientManager.ts +51 -0
- package/src/classes/managers/QueryClientManager/index.ts +1 -0
- package/src/classes/managers/RouterManager/RouterManager.ts +25 -0
- package/src/classes/managers/RouterManager/index.ts +1 -0
- package/src/classes/managers/UserSettingsManager/UserSettingsManager.ts +16 -0
- package/src/classes/managers/UserSettingsManager/index.ts +1 -0
- package/src/classes/managers/WindowManager/WindowManager.test.ts +23 -0
- package/src/classes/managers/WindowManager/WindowManager.ts +26 -0
- package/src/classes/managers/WindowManager/index.ts +1 -0
- package/src/components/app/App/App.tsx +58 -0
- package/src/components/app/App/index.ts +1 -0
- package/src/components/app/ApplicationBootstrap/ApplicationBootstrap.tsx +223 -0
- package/src/components/app/ApplicationBootstrap/index.ts +1 -0
- package/src/components/app/RouterRoot/RouterRoot.tsx +187 -0
- package/src/components/app/RouterRoot/index.ts +1 -0
- package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialog.tsx +347 -0
- package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialogSuccessNotificationMessage.tsx +38 -0
- package/src/components/epi/EpiAddCasesToEventDialog/index.ts +1 -0
- package/src/components/epi/EpiBulkEditCaseDialog/EpiBulkEditCaseDialog.tsx +61 -0
- package/src/components/epi/EpiBulkEditCaseDialog/index.ts +1 -0
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseCaseSetInfo.tsx +137 -0
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseContent.tsx +127 -0
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseForm.tsx +111 -0
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseInfoDialog.tsx +377 -0
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingForm.tsx +140 -0
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingInfo.tsx +23 -0
- package/src/components/epi/EpiCaseInfoDialog/EpiReadOnlyCaseContent.tsx +89 -0
- package/src/components/epi/EpiCaseInfoDialog/index.ts +1 -0
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetContent.tsx +108 -0
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetDescription.tsx +34 -0
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetForm.tsx +151 -0
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetInfoDialog.tsx +389 -0
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingForm.tsx +155 -0
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingInfo.tsx +23 -0
- package/src/components/epi/EpiCaseSetInfoDialog/index.ts +1 -0
- package/src/components/epi/EpiCaseSummary/EpiCaseSummary.tsx +141 -0
- package/src/components/epi/EpiCaseSummary/index.ts +1 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoAccessRights.tsx +91 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoColAccessRights.tsx +118 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoData.tsx +38 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialog.tsx +39 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogContent.tsx +169 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogWithLoader.tsx +42 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoRegions.tsx +87 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoTrees.tsx +73 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoValues.tsx +61 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoVariableDetails.tsx +151 -0
- package/src/components/epi/EpiCaseTypeInfoDialog/index.ts +10 -0
- package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarning.tsx +190 -0
- package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarningCaseSetLink.tsx +62 -0
- package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/index.ts +1 -0
- package/src/components/epi/EpiCompletCaseTypeLoader/EpiCompletCaseTypeLoader.tsx +87 -0
- package/src/components/epi/EpiCompletCaseTypeLoader/index.ts +1 -0
- package/src/components/epi/EpiContactDetailsDialog/EpiContactDetailsDialog.tsx +151 -0
- package/src/components/epi/EpiContactDetailsDialog/index.ts +1 -0
- package/src/components/epi/EpiContextMenu/EpiContextMenu.tsx +155 -0
- package/src/components/epi/EpiContextMenu/index.ts +1 -0
- package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialog.tsx +386 -0
- package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialogSuccessNotificationMessage.tsx +30 -0
- package/src/components/epi/EpiCreateEventDialog/index.ts +1 -0
- package/src/components/epi/EpiCurve/EpiCurve.tsx +525 -0
- package/src/components/epi/EpiCurve/index.ts +1 -0
- package/src/components/epi/EpiCustomTabPanel/EpiCustomTabPanel.tsx +27 -0
- package/src/components/epi/EpiCustomTabPanel/index.ts +1 -0
- package/src/components/epi/EpiDashboard/EpiDashboard.tsx +390 -0
- package/src/components/epi/EpiDashboard/EpiDashboardDownloadSidebarItem.tsx +154 -0
- package/src/components/epi/EpiDashboard/EpiDashboardGeneralSettingsForm.tsx +89 -0
- package/src/components/epi/EpiDashboard/EpiDashboardLayoutRenderer.tsx +248 -0
- package/src/components/epi/EpiDashboard/EpiDashboardLayoutSettingsForm.tsx +160 -0
- package/src/components/epi/EpiDashboard/EpiDashboardSettingsSidebarItem.tsx +93 -0
- package/src/components/epi/EpiDashboard/EpiDashboardTreeSettingsForm.tsx +90 -0
- package/src/components/epi/EpiDashboard/index.ts +1 -0
- package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoader.tsx +34 -0
- package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoaderContent.tsx +73 -0
- package/src/components/epi/EpiDashboardStoreLoader/index.ts +2 -0
- package/src/components/epi/EpiDashboardStoreLoader/withEpiDashboardStore.tsx +19 -0
- package/src/components/epi/EpiDataCollectionAccessInfo/EpiDataCollectionAccessInfo.tsx +88 -0
- package/src/components/epi/EpiDataCollectionAccessInfo/index.ts +1 -0
- package/src/components/epi/EpiFindSimilarCasesDialog/EpiFindSimilarCasesDialog.tsx +302 -0
- package/src/components/epi/EpiFindSimilarCasesDialog/index.ts +1 -0
- package/src/components/epi/EpiLegendaItem/EpiLegendaItem.tsx +106 -0
- package/src/components/epi/EpiLegendaItem/index.ts +1 -0
- package/src/components/epi/EpiLineList/EpiLineList.tsx +492 -0
- package/src/components/epi/EpiLineList/EpiLineListPrimaryMenu.tsx +189 -0
- package/src/components/epi/EpiLineList/EpiLineListSecondaryMenu.tsx +56 -0
- package/src/components/epi/EpiLineList/EpiLineListTitle.tsx +28 -0
- package/src/components/epi/EpiLineList/index.ts +1 -0
- package/src/components/epi/EpiLineList/useEpiLineListEmitDownloadOptions.tsx +102 -0
- package/src/components/epi/EpiMap/EpiMap.tsx +547 -0
- package/src/components/epi/EpiMap/index.ts +1 -0
- package/src/components/epi/EpiRemoveCasesFromEventDialog/EpiRemoveCasesFromEventDialog.tsx +169 -0
- package/src/components/epi/EpiRemoveCasesFromEventDialog/index.ts +1 -0
- package/src/components/epi/EpiRemoveFindSimilarCasesResultDialog/EpiRemoveFindSimilarCasesResultDialog.tsx +216 -0
- package/src/components/epi/EpiSequenceDownloadDialog/EpiSequenceDownloadDialog.tsx +151 -0
- package/src/components/epi/EpiSequenceDownloadDialog/index.ts +1 -0
- package/src/components/epi/EpiStratification/EpiStratification.tsx +241 -0
- package/src/components/epi/EpiStratification/index.ts +1 -0
- package/src/components/epi/EpiTree/EpiTree.tsx +906 -0
- package/src/components/epi/EpiTree/index.ts +1 -0
- package/src/components/epi/EpiTreeDescription/EpiTreeDescription.tsx +71 -0
- package/src/components/epi/EpiTreeDescription/index.ts +1 -0
- package/src/components/epi/EpiUpload/EpiUpload.tsx +107 -0
- package/src/components/epi/EpiUpload/EpiUploadCaseResultTable.tsx +383 -0
- package/src/components/epi/EpiUpload/EpiUploadCreateCases.tsx +266 -0
- package/src/components/epi/EpiUpload/EpiUploadMapColumns.tsx +261 -0
- package/src/components/epi/EpiUpload/EpiUploadMapSequences.tsx +332 -0
- package/src/components/epi/EpiUpload/EpiUploadNavigation.tsx +52 -0
- package/src/components/epi/EpiUpload/EpiUploadSelectFile.tsx +285 -0
- package/src/components/epi/EpiUpload/EpiUploadSelectSequenceFiles.tsx +375 -0
- package/src/components/epi/EpiUpload/EpiUploadValidate.tsx +199 -0
- package/src/components/epi/EpiUpload/EpiUploadValidateNavigation.tsx +34 -0
- package/src/components/epi/EpiUpload/index.ts +1 -0
- package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialog.tsx +101 -0
- package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialogCaseAccessPolicy.tsx +160 -0
- package/src/components/epi/EpiUserRightsDialog/index.ts +1 -0
- package/src/components/epi/EpiWarning/EpiWarning.tsx +39 -0
- package/src/components/epi/EpiWarning/index.ts +1 -0
- package/src/components/epi/EpiWidget/EpiWidget.tsx +255 -0
- package/src/components/epi/EpiWidget/index.ts +1 -0
- package/src/components/epi/EpiWidgetHeaderIconButton/EpiWidgetHeaderIconButton.tsx +40 -0
- package/src/components/epi/EpiWidgetHeaderIconButton/index.ts +1 -0
- package/src/components/epi/EpiWidgetMenu/EpiWidgetMenu.tsx +56 -0
- package/src/components/epi/EpiWidgetMenu/index.ts +1 -0
- package/src/components/epi/EpiWidgetUnavailable/EpiWidgetUnavailable.tsx +51 -0
- package/src/components/epi/EpiWidgetUnavailable/index.ts +1 -0
- package/src/components/filters/BooleanFilterField/BooleanFilterField.tsx +26 -0
- package/src/components/filters/BooleanFilterField/index.ts +1 -0
- package/src/components/filters/DateFilterField/DateFilterField.tsx +23 -0
- package/src/components/filters/DateFilterField/index.ts +1 -0
- package/src/components/filters/GeoFilterField/GeoFilterField.tsx +32 -0
- package/src/components/filters/GeoFilterField/index.ts +1 -0
- package/src/components/filters/MultiSelectFilterField/MultiSelectFilterField.tsx +31 -0
- package/src/components/filters/MultiSelectFilterField/index.ts +1 -0
- package/src/components/filters/NumberRangeFilterField/NumberRangeFilterField.tsx +20 -0
- package/src/components/filters/NumberRangeFilterField/index.ts +1 -0
- package/src/components/filters/TextFilterField/TextFilterField.tsx +18 -0
- package/src/components/filters/TextFilterField/index.ts +1 -0
- package/src/components/form/fields/Autocomplete/Autocomplete.tsx +270 -0
- package/src/components/form/fields/Autocomplete/index.ts +1 -0
- package/src/components/form/fields/CheckboxGroup/CheckboxGroup.tsx +192 -0
- package/src/components/form/fields/CheckboxGroup/index.ts +1 -0
- package/src/components/form/fields/DatePicker/DatePicker.tsx +167 -0
- package/src/components/form/fields/DatePicker/index.ts +1 -0
- package/src/components/form/fields/DateRangePicker/DateRangePicker.tsx +359 -0
- package/src/components/form/fields/DateRangePicker/index.ts +1 -0
- package/src/components/form/fields/NumberField/NumberField.tsx +277 -0
- package/src/components/form/fields/NumberField/index.ts +1 -0
- package/src/components/form/fields/NumberRangeInput/NumberRangeInput.tsx +297 -0
- package/src/components/form/fields/NumberRangeInput/index.ts +1 -0
- package/src/components/form/fields/RadioGroup/RadioGroup.tsx +130 -0
- package/src/components/form/fields/RadioGroup/index.ts +1 -0
- package/src/components/form/fields/RichTextEditor/RichTextEditor.tsx +321 -0
- package/src/components/form/fields/RichTextEditor/RichTextEditorContent.tsx +34 -0
- package/src/components/form/fields/RichTextEditor/index.ts +2 -0
- package/src/components/form/fields/RichTextEditor/useRichTextEditorExtensions.ts +174 -0
- package/src/components/form/fields/Select/Select.tsx +219 -0
- package/src/components/form/fields/Select/index.ts +1 -0
- package/src/components/form/fields/Switch/Switch.tsx +116 -0
- package/src/components/form/fields/Switch/index.ts +1 -0
- package/src/components/form/fields/TextField/TextField.tsx +170 -0
- package/src/components/form/fields/TextField/index.ts +1 -0
- package/src/components/form/fields/ToggleButtonGroup/ToggleButtonGroup.tsx +118 -0
- package/src/components/form/fields/ToggleButtonGroup/index.ts +1 -0
- package/src/components/form/fields/TransferList/TransferList.tsx +360 -0
- package/src/components/form/fields/TransferList/index.ts +1 -0
- package/src/components/form/fields/UploadButton/UploadButton.tsx +157 -0
- package/src/components/form/helpers/FormFieldHelperText/FormFieldHelperText.tsx +68 -0
- package/src/components/form/helpers/FormFieldHelperText/index.ts +1 -0
- package/src/components/form/helpers/FormFieldLoadingIndicator/FormFieldLoadingIndicator.tsx +22 -0
- package/src/components/form/helpers/FormFieldLoadingIndicator/index.ts +1 -0
- package/src/components/form/helpers/GenericForm/GenericForm.tsx +187 -0
- package/src/components/form/helpers/GenericForm/index.ts +1 -0
- package/src/components/ui/ApplicationBar/ApplicationBar.tsx +74 -0
- package/src/components/ui/ApplicationBar/ApplicationBarActions.tsx +124 -0
- package/src/components/ui/ApplicationBar/ApplicationBarActionsFeedbackItem.tsx +102 -0
- package/src/components/ui/ApplicationBar/ApplicationBarActionsInfotem.tsx +60 -0
- package/src/components/ui/ApplicationBar/ApplicationBarActionsNotificationsItem.tsx +82 -0
- package/src/components/ui/ApplicationBar/ApplicationBarActionsOrganizationSwitcherItem.tsx +58 -0
- package/src/components/ui/ApplicationBar/ApplicationBarActionsOutagesItem.tsx +75 -0
- package/src/components/ui/ApplicationBar/ApplicationBarActionsUserItem.tsx +60 -0
- package/src/components/ui/ApplicationBar/ApplicationBarNavigationMenu.tsx +159 -0
- package/src/components/ui/ApplicationBar/InfoMenu.tsx +120 -0
- package/src/components/ui/ApplicationBar/UserMenu.tsx +208 -0
- package/src/components/ui/ApplicationBar/UserOrganizationAdminMenuItem.tsx +69 -0
- package/src/components/ui/ApplicationBar/UserOwnOrganizationMenuItem.tsx +54 -0
- package/src/components/ui/ApplicationBar/index.ts +1 -0
- package/src/components/ui/ApplicationFooter/ApplicationFooter.tsx +121 -0
- package/src/components/ui/ApplicationFooter/ApplicationFooterLink.tsx +48 -0
- package/src/components/ui/ApplicationFooter/ApplicationFooterLinkSection.tsx +56 -0
- package/src/components/ui/ApplicationFooter/index.ts +1 -0
- package/src/components/ui/AuthenticationWrapper/AuthenticationWrapper.tsx +208 -0
- package/src/components/ui/AuthenticationWrapper/index.ts +1 -0
- package/src/components/ui/AuthorizationWrapper/AuthorizationWrapper.tsx +75 -0
- package/src/components/ui/AuthorizationWrapper/index.ts +1 -0
- package/src/components/ui/Breadcrumbs/Breadcrumbs.tsx +92 -0
- package/src/components/ui/Breadcrumbs/index.ts +1 -0
- package/src/components/ui/Confirmation/Confirmation.tsx +10 -0
- package/src/components/ui/Confirmation/ConfirmationRender.tsx +81 -0
- package/src/components/ui/Confirmation/index.ts +2 -0
- package/src/components/ui/ConsentDialog/ConsentDialog.tsx +57 -0
- package/src/components/ui/ConsentDialog/index.ts +1 -0
- package/src/components/ui/CopyToClipboardButton/CopyToClipboardButton.tsx +94 -0
- package/src/components/ui/CopyToClipboardButton/index.ts +1 -0
- package/src/components/ui/Dialog/Dialog.tsx +196 -0
- package/src/components/ui/Dialog/index.ts +1 -0
- package/src/components/ui/FileSelector/FileSelector.tsx +358 -0
- package/src/components/ui/FileSelector/index.ts +1 -0
- package/src/components/ui/GenericErrorMessage/GenericErrorMessage.tsx +168 -0
- package/src/components/ui/GenericErrorMessage/index.ts +1 -0
- package/src/components/ui/HomePageTrends/HomePageTrendCard.tsx +132 -0
- package/src/components/ui/HomePageTrends/HomePageTrends.tsx +312 -0
- package/src/components/ui/HomePageTrends/index.ts +1 -0
- package/src/components/ui/LicensesDialog/LicensesDialog.tsx +231 -0
- package/src/components/ui/LicensesDialog/index.ts +1 -0
- package/src/components/ui/LinearProgressWithLabel/LinearProgressWithLabel.tsx +31 -0
- package/src/components/ui/LinearProgressWithLabel/index.ts +1 -0
- package/src/components/ui/LoadingIndicator/LoadingIndicator.tsx +11 -0
- package/src/components/ui/LoadingIndicator/index.ts +1 -0
- package/src/components/ui/MyPermissionsDialog/MyPermissionsDialog.tsx +95 -0
- package/src/components/ui/MyPermissionsDialog/index.ts +1 -0
- package/src/components/ui/NavLink/NavLink.tsx +47 -0
- package/src/components/ui/NavLink/index.ts +1 -0
- package/src/components/ui/NestedMenu/IconMenuItem.tsx +64 -0
- package/src/components/ui/NestedMenu/NestedDropdown.tsx +133 -0
- package/src/components/ui/NestedMenu/NestedMenuItem.tsx +250 -0
- package/src/components/ui/NestedMenu/index.ts +4 -0
- package/src/components/ui/NestedMenu/nestedMenuItemsFromObject.tsx +98 -0
- package/src/components/ui/Notifications/NotificationItem.tsx +70 -0
- package/src/components/ui/Notifications/NotificationsDrawer.tsx +161 -0
- package/src/components/ui/Notifications/NotificationsStack.tsx +45 -0
- package/src/components/ui/Notifications/index.ts +2 -0
- package/src/components/ui/OrganizationSwitcherDialog/OrganizationSwitcherDialog.tsx +204 -0
- package/src/components/ui/OrganizationSwitcherDialog/index.ts +1 -0
- package/src/components/ui/OutageList/OutageItem.tsx +48 -0
- package/src/components/ui/OutageList/OutageList.tsx +54 -0
- package/src/components/ui/OutageList/OutageSection.tsx +39 -0
- package/src/components/ui/OutageList/index.ts +1 -0
- package/src/components/ui/OutagesDialog/OutagesDialog.tsx +71 -0
- package/src/components/ui/OutagesDialog/index.ts +1 -0
- package/src/components/ui/PageContainer/PageContainer.tsx +207 -0
- package/src/components/ui/PageContainer/index.ts +1 -0
- package/src/components/ui/PanelSeparator/PanelResizeHandle.tsx +67 -0
- package/src/components/ui/PanelSeparator/index.ts +1 -0
- package/src/components/ui/ResponseHandler/ResponseHandler.tsx +79 -0
- package/src/components/ui/ResponseHandler/index.ts +1 -0
- package/src/components/ui/Sidebar/SidebarItem.tsx +138 -0
- package/src/components/ui/Sidebar/SidebarMenu.tsx +33 -0
- package/src/components/ui/Sidebar/SidebarMenuItem.tsx +61 -0
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- package/src/utils/AxiosUtil/AxiosUtil.ts +47 -0
- package/src/utils/AxiosUtil/index.ts +1 -0
- package/src/utils/CaseSelectionUtil/CaseSelectionUtil.ts +32 -0
- package/src/utils/CaseSelectionUtil/index.ts +1 -0
- package/src/utils/CaseSetUtil/CaseSetUtil.ts +13 -0
- package/src/utils/CaseSetUtil/index.ts +1 -0
- package/src/utils/CaseTypeUtil/CaseTypeUtil.ts +178 -0
- package/src/utils/CaseTypeUtil/index.ts +1 -0
- package/src/utils/CaseUtil/CaseUtil.ts +401 -0
- package/src/utils/CaseUtil/index.ts +1 -0
- package/src/utils/DashboardUtil/DashboardUtil.ts +46 -0
- package/src/utils/DashboardUtil/index.ts +1 -0
- package/src/utils/DataHookUtil/DataHookUtil.ts +137 -0
- package/src/utils/DataHookUtil/index.ts +1 -0
- package/src/utils/DataSetUtil/DataSetUtil.ts +70 -0
- package/src/utils/DataSetUtil/index.ts +1 -0
- package/src/utils/DataUtil/DataUtil.ts +84 -0
- package/src/utils/DataUtil/index.ts +1 -0
- package/src/utils/DownloadUtil/DownloadUtil.ts +237 -0
- package/src/utils/DownloadUtil/index.ts +1 -0
- package/src/utils/EffectiveRightsUtil/EffectiveRightsUtil.ts +142 -0
- package/src/utils/EffectiveRightsUtil/index.ts +1 -0
- package/src/utils/EpiCurveUtil/EpiCurveUtil.ts +180 -0
- package/src/utils/EpiCurveUtil/index.ts +1 -0
- package/src/utils/EpiFilterUtil/EpiFilterUtil.ts +232 -0
- package/src/utils/EpiFilterUtil/index.ts +1 -0
- package/src/utils/EpiLineListUtil/EpiLineListUtil.ts +15 -0
- package/src/utils/EpiLineListUtil/index.ts +1 -0
- package/src/utils/EpiMapUtil/EpiMapUtil.test.ts +54 -0
- package/src/utils/EpiMapUtil/EpiMapUtil.ts +80 -0
- package/src/utils/EpiMapUtil/index.ts +1 -0
- package/src/utils/EpiTreeUtil/EpiTreeUtil.test.ts +2467 -0
- package/src/utils/EpiTreeUtil/EpiTreeUtil.ts +1055 -0
- package/src/utils/EpiTreeUtil/index.ts +1 -0
- package/src/utils/EpiUploadUtil/EpiUploadUtil.ts +857 -0
- package/src/utils/EpiUploadUtil/index.ts +1 -0
- package/src/utils/FileUtil/FileUtil.ts +22 -0
- package/src/utils/FileUtil/index.ts +1 -0
- package/src/utils/FormUtil/FormUtil.test.ts +36 -0
- package/src/utils/FormUtil/FormUtil.ts +63 -0
- package/src/utils/FormUtil/index.ts +1 -0
- package/src/utils/MenuDataUtil/MenuDataUtil.ts +54 -0
- package/src/utils/MenuDataUtil/index.ts +1 -0
- package/src/utils/NewickUtil/NewickUtil.test.ts +187 -0
- package/src/utils/NewickUtil/NewickUtil.ts +69 -0
- package/src/utils/NewickUtil/index.ts +1 -0
- package/src/utils/NotificationUtil/NotificationUtil.ts +28 -0
- package/src/utils/NotificationUtil/index.ts +1 -0
- package/src/utils/NumberUtil/NumberUtil.test.ts +113 -0
- package/src/utils/NumberUtil/NumberUtil.ts +67 -0
- package/src/utils/NumberUtil/index.ts +1 -0
- package/src/utils/ObjectUtil/ObjectUtil.test.ts +43 -0
- package/src/utils/ObjectUtil/ObjectUtil.ts +28 -0
- package/src/utils/ObjectUtil/index.ts +1 -0
- package/src/utils/OutageUtil/OutageUtil.test.ts +108 -0
- package/src/utils/OutageUtil/OutageUtil.ts +81 -0
- package/src/utils/OutageUtil/index.ts +1 -0
- package/src/utils/QueryUtil/QueryUtil.test.ts +42 -0
- package/src/utils/QueryUtil/QueryUtil.ts +105 -0
- package/src/utils/QueryUtil/index.ts +1 -0
- package/src/utils/StringUtil/StringUtil.test.ts +61 -0
- package/src/utils/StringUtil/StringUtil.ts +91 -0
- package/src/utils/StringUtil/index.ts +1 -0
- package/src/utils/TableUtil/TableUtil.ts +665 -0
- package/src/utils/TableUtil/index.ts +1 -0
- package/src/utils/TestIdUtil/TestIdUtil.test.ts +12 -0
- package/src/utils/TestIdUtil/TestIdUtil.ts +13 -0
- package/src/utils/TestIdUtil/index.ts +1 -0
- package/src/utils/TimeUtil/TimeUtil.ts +38 -0
- package/src/utils/TimeUtil/index.ts +1 -0
- package/src/utils/UserManagerUtil/UserManagerUtil.test.ts +41 -0
- package/src/utils/UserManagerUtil/UserManagerUtil.ts +39 -0
- package/src/utils/UserManagerUtil/index.ts +1 -0
- package/src/utils/ValidationUtil/ValidationUtil.test.ts +61 -0
- package/src/utils/ValidationUtil/ValidationUtil.ts +56 -0
- package/src/utils/ValidationUtil/index.ts +1 -0
- package/dist/environment.d.ts +0 -54
- package/dist/index.d.ts +0 -16074
- /package/{dist → src/@types}/mui.d.ts +0 -0
- /package/{dist → src/@types}/ui.d.ts +0 -0
- /package/{dist → src/@types}/vite-env.d.ts +0 -0
- /package/{dist → src/@types}/yup.d.ts +0 -0
- /package/{dist → src}/locale/en.json +0 -0
- /package/{dist → src}/locale/nl.json +0 -0
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import type {
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ColType,
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Col,
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RefCol,
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GeneticDistanceProtocol,
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TreeAlgorithm,
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Organization,
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ConceptSet,
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Concept,
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RegionSet,
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Region,
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DataCollection,
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CaseUploadResult,
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} from '../api';
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export type CaseTypeRowValue = {
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raw: string;
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short: string;
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long: string;
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full: string;
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isMissing?: boolean;
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};
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export enum STRATIFICATION_MODE {
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FIELD = 'FIELD',
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SELECTION = 'SELECTION',
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}
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export type StratificationLegendaItem = {
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color: string;
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caseIds: string[];
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rowValue: CaseTypeRowValue;
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columnType?: ColType;
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};
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export enum STRATIFICATION_SELECTED {
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SELECTED = 'SELECTED',
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UNSELECTED = 'UNSELECTED',
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}
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export type Stratification = {
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mode: STRATIFICATION_MODE;
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caseIdColors: { [key: string]: string };
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legendaItems?: StratificationLegendaItem[];
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legendaItemsByColor?: { [key: string]: StratificationLegendaItem };
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legendaItemsByValue?: { [key: string]: StratificationLegendaItem };
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col?: Col;
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};
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export enum EPI_ZONE {
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LINE_LIST = 'LINE_LIST',
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EPI_CURVE = 'EPI_CURVE',
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MAP = 'MAP',
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TREE = 'TREE',
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LEGENDA = 'LEGENDA',
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}
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export type Highlighting = {
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caseIds: string[];
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origin: EPI_ZONE;
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};
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export type TreeFocus = {
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root: string;
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leafs: string[];
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};
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export enum FILTER_TYPE {
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DATE = 'DATE',
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NUMBER = 'NUMBER',
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MULTI_SELECT = 'MULTI_SELECT',
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STRING = 'STRING',
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GEO = 'GEO',
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}
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export type EpiDashboardLayoutPanelOrientation = 'vertical' | 'horizontal';
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export type EpiDashboardLayoutSecondAxisPanel = [30 | 70 | 50 | 100, EPI_ZONE];
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export type EpiDashboardLayoutFirstAxisPanel = [30 | 70 | 50 | 100, ...EpiDashboardLayoutSecondAxisPanel[]];
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export type EpiDashboardLayout = [EpiDashboardLayoutPanelOrientation, ...EpiDashboardLayoutFirstAxisPanel[]];
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export type EpiDashboardLayoutConfig = { zones: EPI_ZONE[]; layouts: EpiDashboardLayout[] };
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export type EpiDashboardLayoutUserConfig = {
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arrangement: number;
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zones: {
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[EPI_ZONE.EPI_CURVE]: boolean;
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[EPI_ZONE.LINE_LIST]: boolean;
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[EPI_ZONE.MAP]: boolean;
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[EPI_ZONE.TREE]: boolean;
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};
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};
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export type TreeConfiguration = {
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computedId: string;
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refCol: RefCol;
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col: Col;
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geneticDistanceProtocol: GeneticDistanceProtocol;
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treeAlgorithm: TreeAlgorithm;
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};
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export type EpiLinkedScrollSubjectValue = {
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position: number;
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origin: HTMLElement;
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};
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export type EpiData = {
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organizations: Organization[];
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organizationsById: { [id: string]: Organization };
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conceptSets: { [id: string]: ConceptSet };
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conceptsBySetId: { [id: string]: Concept[] };
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conceptsIdsBySetId: { [id: string]: string[] };
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conceptsById: { [id: string]: Concept };
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regionSets: { [id: string]: RegionSet };
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regionsByRegionSetId: { [id: string]: Region[] };
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regionsById: { [id: string]: Region };
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userDataCollections: DataCollection[];
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userDataCollectionsById: { [id: string]: DataCollection };
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treeAlgorithms: TreeAlgorithm[];
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};
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export type FindSimilarCasesResult = {
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key: string;
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similarCaseIds: string[];
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originalCaseIds: string[];
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distance: number;
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colId: string;
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};
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export type EpiCaseHasCaseSet = { [caseId: string]: boolean };
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export type EpiUploadMappedColumn = {
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originalIndex: number;
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originalLabel: string;
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col: Col;
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isCaseIdColumn?: boolean;
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isCol?: boolean;
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isSampleIdColumn?: boolean;
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sampleIdentifierIssuerId?: string;
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};
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export type EpiUploadMappedColumnsFormFields = {
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[key: string]: string;
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};
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export type EpiUploadTableRow = {
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[key: string]: string;
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};
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/**
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* File assignment result for genetic file uploads
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*/
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export interface EpiUploadFileColumnAssignment {
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file: File;
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col: Col; // null if no suitable column found
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}
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export type CaseUploadResultWithGeneratedId = CaseUploadResult & { generatedId: string };
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export type EpiUploadSequenceMappingForCaseId = {
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sequenceFileNames: {
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[colId: string]: string;
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};
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readsFileNames: {
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[colId: string]: {
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fwd: string;
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rev: string;
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};
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};
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};
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export type EpiUploadSequenceMapping = {
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[caseId: string]: EpiUploadSequenceMappingForCaseId;
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};
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export type EpiUploadCompleteColStats = {
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sampleIdColumns: Col[];
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sequenceColumns: Col[];
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readsColumns: Col[];
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writableColumns: Col[];
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};
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export enum EPI_UPLOAD_STEP {
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SELECT_FILE = 0,
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MAP_COLUMNS = 1,
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VALIDATE = 2,
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SELECT_SEQUENCE_FILES = 3,
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MAP_SEQUENCES = 4,
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CREATE_CASES = 5,
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}
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import type { TFunction } from 'i18next';
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import type {
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Case,
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FiltersInner,
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} from '../api';
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import type { BooleanFilter } from '../classes/filters/BooleanFilter';
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import type { DateFilter } from '../classes/filters/DateFilter';
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import type { GeoFilter } from '../classes/filters/GeoFilter';
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import type { MultiSelectFilter } from '../classes/filters/MultiSelectFilter';
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import type { NumberRangeFilter } from '../classes/filters/NumberRangeFilter';
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import type { SelectionFilter } from '../classes/filters/SelectionFilter';
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import type { TextFilter } from '../classes/filters/TextFilter';
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import type { TreeFilter } from '../classes/filters/TreeFilter';
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export interface Filter<TFilterValue, TRowValue> {
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initialFilterValue: TFilterValue;
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filterValue: TFilterValue;
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label: string;
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getPresentationValue: (value?: unknown, t?: TFunction<'translation', undefined>) => string;
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matchRowValue: (rowValue: TRowValue, row?: Case) => boolean;
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isInitialFilterValue: (value?: TFilterValue) => boolean;
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setFilterValue: (value: TFilterValue) => void;
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toBackendFilter: () => FiltersInner;
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}
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export type Filters = Array<DateFilter | GeoFilter | MultiSelectFilter | TextFilter | BooleanFilter | NumberRangeFilter | TreeFilter | SelectionFilter>;
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export type FilterValues = { [key: string]: unknown };
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export type FilterDimension = {
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id: string;
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label: string;
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description: string;
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filterIds: string[];
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preferredFilterId: string;
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allowMultipleVisibleFilters: boolean;
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allowOnlyPreferredFilter: boolean;
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};
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@@ -0,0 +1,74 @@
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import type {
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FieldValues,
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Path,
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} from 'react-hook-form';
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import type { RichTextEditorProps } from '../components/form/fields/RichTextEditor';
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import type { TransferListProps } from '../components/form/fields/TransferList';
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import type { AutocompleteProps } from '../components/form/fields/Autocomplete';
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import type { TextFieldProps } from '../components/form/fields/TextField';
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import type { SelectProps } from '../components/form/fields/Select';
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import type { DatePickerProps } from '../components/form/fields/DatePicker';
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import type { UploadButtonProps } from '../components/form/fields/UploadButton/UploadButton';
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import type { RadioGroupProps } from '../components/form/fields/RadioGroup';
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import type { NumberFieldProps } from '../components/form/fields/NumberField';
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export interface OptionBase<TValue> {
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value?: TValue;
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label?: string;
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disabled?: boolean;
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}
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export interface AutoCompleteOption<TValue = void> extends OptionBase<TValue extends void ? (string | number) : TValue> {
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groupBySortOrderValue?: number;
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groupByValue?: string;
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}
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export type RadioButtonOption<TValue = void> = OptionBase<TValue extends void ? (boolean | string | number) : TValue>;
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export type SelectOption<TValue = void> = OptionBase<TValue extends void ? (boolean | string | number) : TValue>;
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export type ToggleButtonOption<TValue = void> = OptionBase<TValue extends void ? (boolean | string | number) : TValue>;
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export type CheckboxOption = OptionBase<string | number>;
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export type TransferListOption = OptionBase<string>;
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export enum FORM_FIELD_DEFINITION_TYPE {
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TRANSFER_LIST = 'TRANSFER_LIST',
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AUTOCOMPLETE = 'AUTOCOMPLETE',
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SELECT = 'SELECT',
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FILE = 'FILE',
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TEXTFIELD = 'TEXTFIELD',
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NUMBER = 'NUMBER',
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RICH_TEXT = 'RICH_TEXT',
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BOOLEAN = 'BOOLEAN',
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HIDDEN = 'HIDDEN',
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DATE = 'DATE',
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RADIO_GROUP = 'RADIO_GROUP',
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}
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export type FormFieldDefinitionAutocomplete<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.AUTOCOMPLETE; multiple?: false } & AutocompleteProps<TFormFields, Path<TFormFields>, false>;
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export type FormFieldDefinitionAutocompleteMultiple<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.AUTOCOMPLETE; multiple?: true } & AutocompleteProps<TFormFields, Path<TFormFields>, true>;
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export type FormFieldDefinitionTextField<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.TEXTFIELD } & TextFieldProps<TFormFields, Path<TFormFields>>;
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export type FormFieldDefinitionNumber<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.NUMBER } & NumberFieldProps<TFormFields, Path<TFormFields>>;
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export type FormFieldDefinitionBoolean<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.BOOLEAN } & Omit<SelectProps<TFormFields, Path<TFormFields>, false>, 'options'>;
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export type FormFieldDefinitionTransferList<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.TRANSFER_LIST } & TransferListProps<TFormFields, Path<TFormFields>>;
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export type FormFieldDefinitionHidden<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.HIDDEN } & TextFieldProps<TFormFields, Path<TFormFields>>;
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export type FormFieldDefinitionRichText<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.RICH_TEXT } & RichTextEditorProps<TFormFields, Path<TFormFields>>;
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export type FormFieldDefinitionDate<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.DATE } & DatePickerProps<TFormFields, Path<TFormFields>>;
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export type FormFieldDefinitionFile<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.FILE } & UploadButtonProps<TFormFields, Path<TFormFields>>;
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export type FormFieldDefinitionRadioGroup<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.RADIO_GROUP } & RadioGroupProps<TFormFields, Path<TFormFields>>;
|
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export type FormFieldDefinitionSelect<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.SELECT; multiple?: false } & SelectProps<TFormFields, Path<TFormFields>, false>;
|
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export type FormFieldDefinitionSelectMultiple<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.SELECT; multiple?: true } & SelectProps<TFormFields, Path<TFormFields>, true>;
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|
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export type FormFieldDefinition<TFormFields extends FieldValues> =
|
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FormFieldDefinitionAutocomplete<TFormFields> |
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FormFieldDefinitionAutocompleteMultiple<TFormFields> |
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FormFieldDefinitionTextField<TFormFields> |
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FormFieldDefinitionNumber<TFormFields> |
|
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FormFieldDefinitionBoolean<TFormFields> |
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FormFieldDefinitionTransferList<TFormFields> |
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FormFieldDefinitionHidden<TFormFields> |
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FormFieldDefinitionRichText<TFormFields> |
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FormFieldDefinitionDate<TFormFields> |
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FormFieldDefinitionFile<TFormFields> |
|
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FormFieldDefinitionRadioGroup<TFormFields> |
|
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FormFieldDefinitionSelect<TFormFields> |
|
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FormFieldDefinitionSelectMultiple<TFormFields>;
|
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@@ -0,0 +1,21 @@
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import type { SxProps } from '@mui/material';
|
|
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|
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import type {
|
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3
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ReactElement,
|
|
4
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ReactNode,
|
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} from 'react';
|
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|
+
|
|
7
|
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export interface MenuItemData {
|
|
8
|
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uid?: string;
|
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9
|
+
label?: string;
|
|
10
|
+
tooltip?: string | ReactElement;
|
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11
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+
leftIcon?: ReactNode;
|
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12
|
+
rightIcon?: ReactNode;
|
|
13
|
+
callback?: () => void;
|
|
14
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+
items?: MenuItemData[];
|
|
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+
disabled?: boolean;
|
|
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+
divider?: boolean;
|
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17
|
+
autoCloseDisabled?: boolean;
|
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|
+
sx?: SxProps;
|
|
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|
+
active?: boolean;
|
|
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|
+
checked?: 'true' | 'false' | 'mixed';
|
|
21
|
+
}
|
|
@@ -0,0 +1,12 @@
|
|
|
1
|
+
import type { AlertColor } from '@mui/material';
|
|
2
|
+
import type { ReactElement } from 'react';
|
|
3
|
+
|
|
4
|
+
export interface Notification {
|
|
5
|
+
isLoading?: boolean;
|
|
6
|
+
message: string | ReactElement;
|
|
7
|
+
severity: AlertColor;
|
|
8
|
+
key: string;
|
|
9
|
+
autoHideAfterMs?: number;
|
|
10
|
+
visible?: boolean;
|
|
11
|
+
timestamp: number;
|
|
12
|
+
}
|
|
@@ -0,0 +1,75 @@
|
|
|
1
|
+
export enum QUERY_KEY {
|
|
2
|
+
ASSEMBLY_PROTOCOLS = 'ASSEMBLY_PROTOCOLS',
|
|
3
|
+
ALLELE_PROFILES = 'ALLELE_PROFILES',
|
|
4
|
+
CASE_DATA_COLLECTION_LINKS = 'CASE_DATA_COLLECTION_LINKS',
|
|
5
|
+
CASE_IDS_BY_QUERY = 'CASE_IDS_BY_QUERY',
|
|
6
|
+
CASE_RIGHTS = 'CASE_RIGHTS',
|
|
7
|
+
CASE_SET_CATEGORIES = 'CASE_SET_CATEGORIES',
|
|
8
|
+
CASE_SET_DATA_COLLECTION_LINKS = 'CASE_SET_DATA_COLLECTION_LINKS',
|
|
9
|
+
CASE_SET_MEMBERS = 'CASE_SET_MEMBERS',
|
|
10
|
+
CASE_SET_RIGHTS = 'CASE_SET_RIGHTS',
|
|
11
|
+
CASE_SET_STATS = 'CASE_SET_STATS',
|
|
12
|
+
CASE_SET_STATUSES = 'CASE_SET_STATUSES',
|
|
13
|
+
CASE_SETS = 'CASE_SETS',
|
|
14
|
+
COL_SET_MEMBERS = 'COL_SET_MEMBERS',
|
|
15
|
+
COL_SETS = 'COL_SETS',
|
|
16
|
+
COLS = 'COLS',
|
|
17
|
+
DIMS = 'DIMS',
|
|
18
|
+
CASE_TYPE_SET_CATEGORIES = 'CASE_TYPE_SET_CATEGORIES',
|
|
19
|
+
CASE_TYPE_SET_MEMBERS = 'CASE_TYPE_SET_MEMBERS',
|
|
20
|
+
CASE_TYPE_SETS = 'CASE_TYPE_SETS',
|
|
21
|
+
CASE_TYPE_STATS = 'CASE_TYPE_STATS',
|
|
22
|
+
CASE_TYPES = 'CASE_TYPES',
|
|
23
|
+
CASES = 'CASES',
|
|
24
|
+
CASES_LAZY = 'CASES_LAZY',
|
|
25
|
+
REF_COLS = 'REF_COLS',
|
|
26
|
+
COMPLETE_CASE_TYPES = 'COMPLETE_CASE_TYPES',
|
|
27
|
+
CONCEPT_SETS = 'CONCEPT_SETS',
|
|
28
|
+
CONCEPTS = 'CONCEPTS',
|
|
29
|
+
CONCEPT_RELATIONS = 'CONCEPT_RELATIONS',
|
|
30
|
+
CONTACTS = 'CONTACTS',
|
|
31
|
+
DATA_COLLECTION_SET_MEMBERS = 'DATA_COLLECTION_SET_MEMBERS',
|
|
32
|
+
DATA_COLLECTION_SETS = 'DATA_COLLECTION_SETS',
|
|
33
|
+
DATA_COLLECTIONS = 'DATA_COLLECTIONS',
|
|
34
|
+
REF_DIMS = 'REF_DIMS',
|
|
35
|
+
DISEASES = 'DISEASES',
|
|
36
|
+
ETIOLOGICAL_AGENTS = 'ETIOLOGICAL_AGENTS',
|
|
37
|
+
ETIOLOGIES = 'ETIOLOGIES',
|
|
38
|
+
GENETIC_DISTANCE_PROTOCOLS = 'GENETIC_DISTANCE_PROTOCOLS',
|
|
39
|
+
GENETIC_SEQUENCES = 'GENETIC_SEQUENCES',
|
|
40
|
+
IDENTITY_PROVIDERS = 'IDENTITY_PROVIDERS',
|
|
41
|
+
INVITE_USER_CONSTRAINTS = 'INVITE_USER_CONSTRAINTS',
|
|
42
|
+
LICENSES = 'LICENSES',
|
|
43
|
+
SEQUENCING_PROTOCOLS = 'SEQUENCING_PROTOCOLS',
|
|
44
|
+
ORGANIZATION_ACCESS_CASE_POLICIES = 'ORGANIZATION_ACCESS_CASE_POLICIES',
|
|
45
|
+
ORGANIZATION_ADMIN_NAME_EMAILS = 'ORGANIZATION_ADMIN_NAME_EMAILS',
|
|
46
|
+
ORGANIZATION_ADMIN_POLICIES = 'ORGANIZATION_ADMIN_POLICIES',
|
|
47
|
+
ORGANIZATION_SHARE_CASE_POLICIES = 'ORGANIZATION_SHARE_CASE_POLICIES',
|
|
48
|
+
ORGANIZATIONS = 'ORGANIZATIONS',
|
|
49
|
+
OUTAGES = 'OUTAGES',
|
|
50
|
+
PHYLOGENETIC_TREE = 'PHYLOGENETIC_TREE',
|
|
51
|
+
REGION_SET_SHAPES = 'REGION_SET_SHAPES',
|
|
52
|
+
REGION_SETS = 'REGION_SETS',
|
|
53
|
+
REGION_SETS_LAZY = 'REGION_SETS_LAZY',
|
|
54
|
+
REGION_RELATIONS = 'REGION_RELATIONS',
|
|
55
|
+
REGIONS = 'REGIONS',
|
|
56
|
+
REGIONS_LAZY = 'REGIONS_LAZY',
|
|
57
|
+
SIMILAR_CASES = 'SIMILAR_CASES',
|
|
58
|
+
SITES = 'SITES',
|
|
59
|
+
SUBJECTS = 'SUBJECT_IDENTIFIERS',
|
|
60
|
+
TREE_ALGORITHM_CLASSES = 'TREE_ALGORITHM_CLASSES',
|
|
61
|
+
TREE_ALGORITHMS = 'TREE_ALGORITHMS',
|
|
62
|
+
USER_ACCESS_CASE_POLICIES = 'USER_ACCESS_CASE_POLICIES',
|
|
63
|
+
USER_ME = 'USER_ME',
|
|
64
|
+
USER_PERMISSIONS = 'USER_PERMISSIONS',
|
|
65
|
+
USER_INVITATIONS = 'USER_INVITATIONS',
|
|
66
|
+
USER_SHARE_CASE_POLICIES = 'USER_SHARE_CASE_POLICIES',
|
|
67
|
+
USERS = 'USERS',
|
|
68
|
+
VALIDATE_CASES = 'VALIDATE_CASES',
|
|
69
|
+
IDENTIFIER_ISSUERS = 'IDENTIFIER_ISSUERS',
|
|
70
|
+
IDENTIFIER_ISSUERS_OWN_ORGANIZATION = 'IDENTIFIER_ISSUERS_OWN_ORGANIZATION',
|
|
71
|
+
IDENTIFIER_ISSUER_LINKS = 'IDENTIFIER_ISSUER_LINKS',
|
|
72
|
+
REF_COLS_VALIDATION_RULES = 'REF_COLS_VALIDATION_RULES',
|
|
73
|
+
XXX_CASE_ID_HAS_CASE_SET = 'XXX_CASE_ID_HAS_CASE_SET',
|
|
74
|
+
FEATURE_FLAGS = 'FEATURE_FLAGS',
|
|
75
|
+
}
|
|
@@ -0,0 +1,36 @@
|
|
|
1
|
+
import type { ReactElement } from 'react';
|
|
2
|
+
import type {
|
|
3
|
+
IndexRouteObject,
|
|
4
|
+
NonIndexRouteObject,
|
|
5
|
+
} from 'react-router';
|
|
6
|
+
|
|
7
|
+
import type { ApiPermission } from '../api';
|
|
8
|
+
|
|
9
|
+
export type UseLoaderData<T> = {
|
|
10
|
+
data: T;
|
|
11
|
+
};
|
|
12
|
+
|
|
13
|
+
export type MyHandle = {
|
|
14
|
+
root?: boolean;
|
|
15
|
+
title: string;
|
|
16
|
+
subTitle?: string;
|
|
17
|
+
icon?: ReactElement;
|
|
18
|
+
hidden?: boolean;
|
|
19
|
+
disabled?: boolean;
|
|
20
|
+
requiredPermissions: ApiPermission[];
|
|
21
|
+
requiresUserProfile: boolean;
|
|
22
|
+
requirePermissionForChildRoute?: boolean;
|
|
23
|
+
category?: string;
|
|
24
|
+
};
|
|
25
|
+
|
|
26
|
+
export type MyIndexRouteObject = Omit<IndexRouteObject, 'handle'> & {
|
|
27
|
+
handle?: MyHandle;
|
|
28
|
+
};
|
|
29
|
+
|
|
30
|
+
export type MyNonIndexRouteObject = Omit<
|
|
31
|
+
NonIndexRouteObject,
|
|
32
|
+
'handle' | 'children'
|
|
33
|
+
> & {
|
|
34
|
+
handle?: MyHandle;
|
|
35
|
+
children?: Array<MyNonIndexRouteObject | MyIndexRouteObject>;
|
|
36
|
+
};
|
|
@@ -0,0 +1,191 @@
|
|
|
1
|
+
import type {
|
|
2
|
+
SxProps,
|
|
3
|
+
Theme,
|
|
4
|
+
} from '@mui/material';
|
|
5
|
+
import type { ReactElement } from 'react';
|
|
6
|
+
import type { TFunction } from 'i18next';
|
|
7
|
+
|
|
8
|
+
import type {
|
|
9
|
+
CompleteCaseType,
|
|
10
|
+
Col,
|
|
11
|
+
} from '../api';
|
|
12
|
+
import type { DATE_FORMAT } from '../data/date';
|
|
13
|
+
|
|
14
|
+
import type { CaseTypeRowValue } from './epi';
|
|
15
|
+
import type { OptionBase } from './form';
|
|
16
|
+
|
|
17
|
+
export enum FIXED_COLUMN_ID {
|
|
18
|
+
ROW_SELECT = 'ROW_SELECT',
|
|
19
|
+
READABLE_INDEX = 'READABLE_INDEX',
|
|
20
|
+
ACTIONS = 'ACTIONS',
|
|
21
|
+
}
|
|
22
|
+
|
|
23
|
+
export interface TableColumnParams<TRowData> {
|
|
24
|
+
columnIndex: number;
|
|
25
|
+
column: TableColumn<TRowData>;
|
|
26
|
+
}
|
|
27
|
+
|
|
28
|
+
export interface TableRowParams<TRowData> {
|
|
29
|
+
id: string;
|
|
30
|
+
row: TRowData;
|
|
31
|
+
rowIndex: number;
|
|
32
|
+
}
|
|
33
|
+
|
|
34
|
+
export type TableRowAndColumnParams<TRowData> = TableRowParams<TRowData> & TableColumnParams<TRowData>;
|
|
35
|
+
|
|
36
|
+
interface TableColumnBase<TRowData, TValue> {
|
|
37
|
+
cellTitleGetter?: (params: TableRowParams<TRowData>) => string;
|
|
38
|
+
filterLabel?: string;
|
|
39
|
+
frozen?: boolean;
|
|
40
|
+
headerName?: string;
|
|
41
|
+
headerTooltipContent?: string;
|
|
42
|
+
hideInFilter?: boolean;
|
|
43
|
+
id?: string;
|
|
44
|
+
isInitiallyVisible: boolean;
|
|
45
|
+
renderCell?: (params: TableRowAndColumnParams<TRowData>) => ReactElement;
|
|
46
|
+
renderHeaderContent?: (params: TableColumnParams<TRowData>) => ReactElement;
|
|
47
|
+
renderHeader?: (params: TableColumnParams<TRowData>) => ReactElement;
|
|
48
|
+
resizable?: boolean;
|
|
49
|
+
sx?: SxProps<Theme>;
|
|
50
|
+
textAlign?: 'left' | 'right';
|
|
51
|
+
isStatic?: boolean;
|
|
52
|
+
valueGetter?: (params: TableRowParams<TRowData>) => TValue;
|
|
53
|
+
displayValueGetter?: (params: TableRowParams<TRowData>) => string;
|
|
54
|
+
widthFlex?: number;
|
|
55
|
+
widthPx?: number;
|
|
56
|
+
widthPxFn?: (dataLength: number) => number;
|
|
57
|
+
disableEllipsis?: boolean;
|
|
58
|
+
}
|
|
59
|
+
|
|
60
|
+
export interface TableColumnText<TRowData> extends TableColumnBase<TRowData, string> {
|
|
61
|
+
type: 'text';
|
|
62
|
+
comparatorFactory?: (params: GetTableCellRowComparatorProps<TableColumnText<TRowData>>) => (a: TRowData, b: TRowData) => number;
|
|
63
|
+
}
|
|
64
|
+
|
|
65
|
+
export interface TableColumnReadableIndex<TRowData> extends TableColumnBase<TRowData, never> {
|
|
66
|
+
type: 'readableIndex';
|
|
67
|
+
id: FIXED_COLUMN_ID.READABLE_INDEX;
|
|
68
|
+
comparatorFactory?: never;
|
|
69
|
+
isStatic: true;
|
|
70
|
+
frozen: true;
|
|
71
|
+
resizable: false;
|
|
72
|
+
disableEllipsis: true;
|
|
73
|
+
getAriaLabel: (params: TableRowParams<TRowData>) => string;
|
|
74
|
+
}
|
|
75
|
+
|
|
76
|
+
export interface TableColumnSelectable<TRowData> extends TableColumnBase<TRowData, never> {
|
|
77
|
+
type: 'selectable';
|
|
78
|
+
id: FIXED_COLUMN_ID.ROW_SELECT;
|
|
79
|
+
comparatorFactory?: never;
|
|
80
|
+
isStatic: true;
|
|
81
|
+
frozen: true;
|
|
82
|
+
resizable: false;
|
|
83
|
+
disableEllipsis: true;
|
|
84
|
+
isDisabled?: (params: TableRowParams<TRowData>) => boolean;
|
|
85
|
+
}
|
|
86
|
+
|
|
87
|
+
export interface TableColumnBoolean<TRowData> extends TableColumnBase<TRowData, boolean> {
|
|
88
|
+
type: 'boolean';
|
|
89
|
+
comparatorFactory?: (params: GetTableCellRowComparatorProps<TableColumnBoolean<TRowData>>) => (a: TRowData, b: TRowData) => number;
|
|
90
|
+
}
|
|
91
|
+
|
|
92
|
+
export interface TableColumnNumber<TRowData> extends TableColumnBase<TRowData, number> {
|
|
93
|
+
type: 'number';
|
|
94
|
+
comparatorFactory?: (params: GetTableCellRowComparatorProps<TableColumnNumber<TRowData>>) => (a: TRowData, b: TRowData) => number;
|
|
95
|
+
}
|
|
96
|
+
|
|
97
|
+
export interface TableColumnDate<TRowData> extends TableColumnBase<TRowData, string> {
|
|
98
|
+
type: 'date';
|
|
99
|
+
dateFormat: typeof DATE_FORMAT[keyof typeof DATE_FORMAT];
|
|
100
|
+
comparatorFactory?: (params: GetTableCellRowComparatorProps<TableColumnDate<TRowData>>) => (a: TRowData, b: TRowData) => number;
|
|
101
|
+
}
|
|
102
|
+
|
|
103
|
+
export interface TableColumnOptions<TRowData> extends TableColumnBase<TRowData, string | string[]> {
|
|
104
|
+
type: 'options';
|
|
105
|
+
options: OptionBase<string>[];
|
|
106
|
+
maxNumOptionsExpanded?: number;
|
|
107
|
+
shouldFilterOptions?: boolean;
|
|
108
|
+
comparatorFactory?: (params: GetTableCellRowComparatorProps<TableColumnOptions<TRowData>>) => (a: TRowData, b: TRowData) => number;
|
|
109
|
+
}
|
|
110
|
+
|
|
111
|
+
export interface TableColumnActions<TRowData> extends TableColumnBase<TRowData, string> {
|
|
112
|
+
id: FIXED_COLUMN_ID.ACTIONS;
|
|
113
|
+
type: 'actions';
|
|
114
|
+
getActions: (params: TableRowParams<TRowData>) => ReactElement[];
|
|
115
|
+
comparatorFactory?: (params: GetTableCellRowComparatorProps<TableColumnActions<TRowData>>) => (a: TRowData, b: TRowData) => number;
|
|
116
|
+
isInitiallyVisible: true;
|
|
117
|
+
resizable: false;
|
|
118
|
+
isStatic: true;
|
|
119
|
+
}
|
|
120
|
+
|
|
121
|
+
export interface TableColumnCaseType<TRowData> extends TableColumnBase<TRowData, CaseTypeRowValue> {
|
|
122
|
+
type: 'caseType';
|
|
123
|
+
completeCaseType: CompleteCaseType;
|
|
124
|
+
col: Col;
|
|
125
|
+
comparatorFactory?: (params: GetTableCellRowComparatorProps<TableColumnCaseType<TRowData>>) => (a: TRowData, b: TRowData) => number;
|
|
126
|
+
}
|
|
127
|
+
|
|
128
|
+
export interface GetTableCellValueProps<TRowData, TColumn> {
|
|
129
|
+
readonly row: TRowData;
|
|
130
|
+
readonly column: TColumn;
|
|
131
|
+
readonly rowIndex: number;
|
|
132
|
+
readonly t?: TFunction<'translation', undefined>;
|
|
133
|
+
}
|
|
134
|
+
|
|
135
|
+
export interface GetTableCellRowComparatorProps<TColumn> {
|
|
136
|
+
readonly column: TColumn;
|
|
137
|
+
readonly direction: TableSortDirection;
|
|
138
|
+
}
|
|
139
|
+
|
|
140
|
+
export type TableCellRowComparatorArgument<TRowData> = {
|
|
141
|
+
row: TRowData;
|
|
142
|
+
rowIndex: number;
|
|
143
|
+
};
|
|
144
|
+
|
|
145
|
+
export type TableColumn<TRowData> =
|
|
146
|
+
TableColumnText<TRowData> |
|
|
147
|
+
TableColumnBoolean<TRowData> |
|
|
148
|
+
TableColumnNumber<TRowData> |
|
|
149
|
+
TableColumnDate<TRowData> |
|
|
150
|
+
TableColumnOptions<TRowData> |
|
|
151
|
+
TableColumnActions<TRowData> |
|
|
152
|
+
TableColumnReadableIndex<TRowData> |
|
|
153
|
+
TableColumnSelectable<TRowData> |
|
|
154
|
+
TableColumnCaseType<TRowData>;
|
|
155
|
+
|
|
156
|
+
export type TableSortDirection = 'asc' | 'desc';
|
|
157
|
+
|
|
158
|
+
|
|
159
|
+
export type TableColumnSettings = {
|
|
160
|
+
id: string;
|
|
161
|
+
widthPx: number;
|
|
162
|
+
widthFlex: number;
|
|
163
|
+
offsetX?: number;
|
|
164
|
+
calculatedWidth?: number;
|
|
165
|
+
hasResized?: boolean;
|
|
166
|
+
isVisible: boolean;
|
|
167
|
+
};
|
|
168
|
+
|
|
169
|
+
export type TableSettings = {
|
|
170
|
+
availableColumnIds: string[];
|
|
171
|
+
columns: TableColumnSettings[];
|
|
172
|
+
};
|
|
173
|
+
|
|
174
|
+
export type TableColumnDimension = {
|
|
175
|
+
id: string;
|
|
176
|
+
label: string;
|
|
177
|
+
columnIds: string[];
|
|
178
|
+
};
|
|
179
|
+
|
|
180
|
+
export type HasCellDataFn<TRowData> = (row: TRowData, column: TableColumn<TRowData>, rowIndex: number) => boolean;
|
|
181
|
+
|
|
182
|
+
export type TableDragEvent = {
|
|
183
|
+
deltaX: number;
|
|
184
|
+
deltaY: number;
|
|
185
|
+
clientX: number;
|
|
186
|
+
clientY: number;
|
|
187
|
+
elementOffsetX: number;
|
|
188
|
+
elementWidth: number;
|
|
189
|
+
type: 'start' | 'move' | 'end';
|
|
190
|
+
target: HTMLDivElement;
|
|
191
|
+
};
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
export type PropsWithTestIdAttributes<P> = P & { testIdAttributes: Record<string, string> };
|
|
@@ -0,0 +1,32 @@
|
|
|
1
|
+
import type Decimal from 'decimal.js';
|
|
2
|
+
|
|
3
|
+
export type TreeNode = {
|
|
4
|
+
children?: TreeNode[];
|
|
5
|
+
name?: string;
|
|
6
|
+
subTreeNames?: string[];
|
|
7
|
+
subTreeLeaveNames?: string[];
|
|
8
|
+
branchLength?: Decimal;
|
|
9
|
+
maxBranchLength?: Decimal;
|
|
10
|
+
size?: number;
|
|
11
|
+
address?: string;
|
|
12
|
+
};
|
|
13
|
+
|
|
14
|
+
export type TreePathProperties = {
|
|
15
|
+
subTreeLeaveNames: string[];
|
|
16
|
+
treeNode?: TreeNode;
|
|
17
|
+
};
|
|
18
|
+
|
|
19
|
+
type TreeAssemblyPathPropertiesMap = Map<Path2D, TreePathProperties>;
|
|
20
|
+
|
|
21
|
+
export type TreeAssembly = {
|
|
22
|
+
verticalAncestorTreeLines: Array<{ nodeNames: string[]; shape: Path2D }>;
|
|
23
|
+
horizontalAncestorTreeLines: Array<{ nodeNames: string[]; shape: Path2D }>;
|
|
24
|
+
ancestorNodes: Array<{ nodeNames: string[]; shape: Path2D }>;
|
|
25
|
+
leafNodes: Array<{ nodeName: string; shape: Path2D }>;
|
|
26
|
+
leafTreeLines: Array<{ nodeName: string; shape: Path2D }>;
|
|
27
|
+
supportLines: Array<{ nodeName: string; fromX: number; toX: number; y: number }>;
|
|
28
|
+
distanceTexts: Array<{ nodeNames: string[]; x: number; y: number; text: string }>;
|
|
29
|
+
nodePathPropertiesMap: TreeAssemblyPathPropertiesMap;
|
|
30
|
+
horizontalLinePathPropertiesMap: TreeAssemblyPathPropertiesMap;
|
|
31
|
+
verticalLinePathPropertiesMap: TreeAssemblyPathPropertiesMap;
|
|
32
|
+
};
|