@gen-epix/ui 1.14.4 → 1.15.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (739) hide show
  1. package/README.md +3 -3
  2. package/dist/index.js +27287 -27948
  3. package/package.json +94 -84
  4. package/src/@types/environment.d.ts +54 -0
  5. package/src/api/api.ts +43576 -0
  6. package/src/api/base.ts +111 -0
  7. package/src/api/common.ts +168 -0
  8. package/src/api/configuration.ts +118 -0
  9. package/src/api/index.ts +20 -0
  10. package/src/assets/icons/CollectionIcon.svg +1 -0
  11. package/src/assets/icons/DnaIcon.svg +1 -0
  12. package/src/assets/icons/VirusIcon.svg +1 -0
  13. package/src/assets/logo/logo-rijksoverheid.svg +42 -0
  14. package/src/assets/logo/logo-rivm.svg +6 -0
  15. package/src/classes/Subject/Subject.ts +26 -0
  16. package/src/classes/Subject/index.ts +1 -0
  17. package/src/classes/TableEventBus/TableEventBus.ts +14 -0
  18. package/src/classes/TableEventBus/index.ts +1 -0
  19. package/src/classes/abstracts/EventBusAbstract/EventBusAbstract.ts +37 -0
  20. package/src/classes/abstracts/EventBusAbstract/index.ts +1 -0
  21. package/src/classes/abstracts/FilterAbstract/FilterAbstract.ts +54 -0
  22. package/src/classes/abstracts/FilterAbstract/index.ts +1 -0
  23. package/src/classes/abstracts/SubscribableAbstract/SubscribableAbstract.ts +20 -0
  24. package/src/classes/abstracts/SubscribableAbstract/index.ts +1 -0
  25. package/src/classes/errors/UploadError.ts +11 -0
  26. package/src/classes/errors/index.ts +1 -0
  27. package/src/classes/filters/BooleanFilter.ts +31 -0
  28. package/src/classes/filters/DateFilter.ts +133 -0
  29. package/src/classes/filters/GeoFilter.ts +60 -0
  30. package/src/classes/filters/MultiSelectFilter.ts +70 -0
  31. package/src/classes/filters/NumberRangeFilter.ts +82 -0
  32. package/src/classes/filters/SelectionFilter.ts +25 -0
  33. package/src/classes/filters/TextFilter.ts +36 -0
  34. package/src/classes/filters/TreeFilter.ts +22 -0
  35. package/src/classes/managers/AuthenticationManager/AuthenticationManager.ts +94 -0
  36. package/src/classes/managers/AuthenticationManager/index.ts +1 -0
  37. package/src/classes/managers/AuthorizationManager/AuthorizationManager.ts +70 -0
  38. package/src/classes/managers/AuthorizationManager/index.ts +1 -0
  39. package/src/classes/managers/BackendVersionManager/BackendVersionManager.ts +23 -0
  40. package/src/classes/managers/BackendVersionManager/index.ts +1 -0
  41. package/src/classes/managers/BreadcrumbManager/BreadcrumbManager.ts +30 -0
  42. package/src/classes/managers/BreadcrumbManager/index.ts +1 -0
  43. package/src/classes/managers/ConfigManager/ConfigManager.ts +31 -0
  44. package/src/classes/managers/ConfigManager/index.ts +1 -0
  45. package/src/classes/managers/DevicePixelRatioManager/DevicePixelRatioManager.ts +27 -0
  46. package/src/classes/managers/DevicePixelRatioManager/index.ts +1 -0
  47. package/src/classes/managers/EmotionCacheManager/EmotionCacheManager.ts +27 -0
  48. package/src/classes/managers/EmotionCacheManager/index.ts +1 -0
  49. package/src/classes/managers/EpiDataManager/EpiDataManager.ts +196 -0
  50. package/src/classes/managers/EpiDataManager/index.ts +1 -0
  51. package/src/classes/managers/EpiEventBusManager/EpiEventBusManager.ts +61 -0
  52. package/src/classes/managers/EpiEventBusManager/index.ts +1 -0
  53. package/src/classes/managers/EpiHighlightingManager/EpiHighlightingManager.ts +32 -0
  54. package/src/classes/managers/EpiHighlightingManager/index.ts +1 -0
  55. package/src/classes/managers/EpiLineListCaseSetMembersManager/EpiListsCaseSetMembersManager.ts +118 -0
  56. package/src/classes/managers/EpiLineListCaseSetMembersManager/index.ts +1 -0
  57. package/src/classes/managers/FeatureFlagsManager/FeatureFlagsManager.ts +30 -0
  58. package/src/classes/managers/FeatureFlagsManager/index.ts +1 -0
  59. package/src/classes/managers/I18nManager/I18nManager.ts +105 -0
  60. package/src/classes/managers/I18nManager/index.ts +1 -0
  61. package/src/classes/managers/InactivityManager/InactivityManager.ts +119 -0
  62. package/src/classes/managers/InactivityManager/index.ts +1 -0
  63. package/src/classes/managers/KeyboardShortcutManager/KeyboardShortcutManager.ts +78 -0
  64. package/src/classes/managers/KeyboardShortcutManager/index.ts +1 -0
  65. package/src/classes/managers/LogManager/LogManager.ts +151 -0
  66. package/src/classes/managers/LogManager/index.ts +1 -0
  67. package/src/classes/managers/NavigationHistoryManager/NavigationHistoryManager.ts +16 -0
  68. package/src/classes/managers/NavigationHistoryManager/index.ts +1 -0
  69. package/src/classes/managers/NotificationManager/NotificationManager.ts +104 -0
  70. package/src/classes/managers/NotificationManager/index.ts +1 -0
  71. package/src/classes/managers/PageEventBusManager/PageEventBusManager.ts +116 -0
  72. package/src/classes/managers/PageEventBusManager/index.ts +1 -0
  73. package/src/classes/managers/QueryClientManager/QueryClientManager.ts +51 -0
  74. package/src/classes/managers/QueryClientManager/index.ts +1 -0
  75. package/src/classes/managers/RouterManager/RouterManager.ts +25 -0
  76. package/src/classes/managers/RouterManager/index.ts +1 -0
  77. package/src/classes/managers/UserSettingsManager/UserSettingsManager.ts +16 -0
  78. package/src/classes/managers/UserSettingsManager/index.ts +1 -0
  79. package/src/classes/managers/WindowManager/WindowManager.test.ts +23 -0
  80. package/src/classes/managers/WindowManager/WindowManager.ts +26 -0
  81. package/src/classes/managers/WindowManager/index.ts +1 -0
  82. package/src/components/app/App/App.tsx +58 -0
  83. package/src/components/app/App/index.ts +1 -0
  84. package/src/components/app/ApplicationBootstrap/ApplicationBootstrap.tsx +223 -0
  85. package/src/components/app/ApplicationBootstrap/index.ts +1 -0
  86. package/src/components/app/RouterRoot/RouterRoot.tsx +187 -0
  87. package/src/components/app/RouterRoot/index.ts +1 -0
  88. package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialog.tsx +347 -0
  89. package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialogSuccessNotificationMessage.tsx +38 -0
  90. package/src/components/epi/EpiAddCasesToEventDialog/index.ts +1 -0
  91. package/src/components/epi/EpiBulkEditCaseDialog/EpiBulkEditCaseDialog.tsx +61 -0
  92. package/src/components/epi/EpiBulkEditCaseDialog/index.ts +1 -0
  93. package/src/components/epi/EpiCaseInfoDialog/EpiCaseCaseSetInfo.tsx +137 -0
  94. package/src/components/epi/EpiCaseInfoDialog/EpiCaseContent.tsx +127 -0
  95. package/src/components/epi/EpiCaseInfoDialog/EpiCaseForm.tsx +111 -0
  96. package/src/components/epi/EpiCaseInfoDialog/EpiCaseInfoDialog.tsx +377 -0
  97. package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingForm.tsx +140 -0
  98. package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingInfo.tsx +23 -0
  99. package/src/components/epi/EpiCaseInfoDialog/EpiReadOnlyCaseContent.tsx +89 -0
  100. package/src/components/epi/EpiCaseInfoDialog/index.ts +1 -0
  101. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetContent.tsx +108 -0
  102. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetDescription.tsx +34 -0
  103. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetForm.tsx +151 -0
  104. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetInfoDialog.tsx +389 -0
  105. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingForm.tsx +155 -0
  106. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingInfo.tsx +23 -0
  107. package/src/components/epi/EpiCaseSetInfoDialog/index.ts +1 -0
  108. package/src/components/epi/EpiCaseSummary/EpiCaseSummary.tsx +141 -0
  109. package/src/components/epi/EpiCaseSummary/index.ts +1 -0
  110. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoAccessRights.tsx +91 -0
  111. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoColAccessRights.tsx +118 -0
  112. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoData.tsx +38 -0
  113. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialog.tsx +39 -0
  114. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogContent.tsx +169 -0
  115. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogWithLoader.tsx +42 -0
  116. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoRegions.tsx +87 -0
  117. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoTrees.tsx +73 -0
  118. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoValues.tsx +61 -0
  119. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoVariableDetails.tsx +151 -0
  120. package/src/components/epi/EpiCaseTypeInfoDialog/index.ts +10 -0
  121. package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarning.tsx +190 -0
  122. package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarningCaseSetLink.tsx +62 -0
  123. package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/index.ts +1 -0
  124. package/src/components/epi/EpiCompletCaseTypeLoader/EpiCompletCaseTypeLoader.tsx +87 -0
  125. package/src/components/epi/EpiCompletCaseTypeLoader/index.ts +1 -0
  126. package/src/components/epi/EpiContactDetailsDialog/EpiContactDetailsDialog.tsx +151 -0
  127. package/src/components/epi/EpiContactDetailsDialog/index.ts +1 -0
  128. package/src/components/epi/EpiContextMenu/EpiContextMenu.tsx +155 -0
  129. package/src/components/epi/EpiContextMenu/index.ts +1 -0
  130. package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialog.tsx +386 -0
  131. package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialogSuccessNotificationMessage.tsx +30 -0
  132. package/src/components/epi/EpiCreateEventDialog/index.ts +1 -0
  133. package/src/components/epi/EpiCurve/EpiCurve.tsx +525 -0
  134. package/src/components/epi/EpiCurve/index.ts +1 -0
  135. package/src/components/epi/EpiCustomTabPanel/EpiCustomTabPanel.tsx +27 -0
  136. package/src/components/epi/EpiCustomTabPanel/index.ts +1 -0
  137. package/src/components/epi/EpiDashboard/EpiDashboard.tsx +390 -0
  138. package/src/components/epi/EpiDashboard/EpiDashboardDownloadSidebarItem.tsx +154 -0
  139. package/src/components/epi/EpiDashboard/EpiDashboardGeneralSettingsForm.tsx +89 -0
  140. package/src/components/epi/EpiDashboard/EpiDashboardLayoutRenderer.tsx +248 -0
  141. package/src/components/epi/EpiDashboard/EpiDashboardLayoutSettingsForm.tsx +160 -0
  142. package/src/components/epi/EpiDashboard/EpiDashboardSettingsSidebarItem.tsx +93 -0
  143. package/src/components/epi/EpiDashboard/EpiDashboardTreeSettingsForm.tsx +90 -0
  144. package/src/components/epi/EpiDashboard/index.ts +1 -0
  145. package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoader.tsx +34 -0
  146. package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoaderContent.tsx +73 -0
  147. package/src/components/epi/EpiDashboardStoreLoader/index.ts +2 -0
  148. package/src/components/epi/EpiDashboardStoreLoader/withEpiDashboardStore.tsx +19 -0
  149. package/src/components/epi/EpiDataCollectionAccessInfo/EpiDataCollectionAccessInfo.tsx +88 -0
  150. package/src/components/epi/EpiDataCollectionAccessInfo/index.ts +1 -0
  151. package/src/components/epi/EpiFindSimilarCasesDialog/EpiFindSimilarCasesDialog.tsx +302 -0
  152. package/src/components/epi/EpiFindSimilarCasesDialog/index.ts +1 -0
  153. package/src/components/epi/EpiLegendaItem/EpiLegendaItem.tsx +106 -0
  154. package/src/components/epi/EpiLegendaItem/index.ts +1 -0
  155. package/src/components/epi/EpiLineList/EpiLineList.tsx +492 -0
  156. package/src/components/epi/EpiLineList/EpiLineListPrimaryMenu.tsx +189 -0
  157. package/src/components/epi/EpiLineList/EpiLineListSecondaryMenu.tsx +56 -0
  158. package/src/components/epi/EpiLineList/EpiLineListTitle.tsx +28 -0
  159. package/src/components/epi/EpiLineList/index.ts +1 -0
  160. package/src/components/epi/EpiLineList/useEpiLineListEmitDownloadOptions.tsx +102 -0
  161. package/src/components/epi/EpiMap/EpiMap.tsx +547 -0
  162. package/src/components/epi/EpiMap/index.ts +1 -0
  163. package/src/components/epi/EpiRemoveCasesFromEventDialog/EpiRemoveCasesFromEventDialog.tsx +169 -0
  164. package/src/components/epi/EpiRemoveCasesFromEventDialog/index.ts +1 -0
  165. package/src/components/epi/EpiRemoveFindSimilarCasesResultDialog/EpiRemoveFindSimilarCasesResultDialog.tsx +216 -0
  166. package/src/components/epi/EpiSequenceDownloadDialog/EpiSequenceDownloadDialog.tsx +151 -0
  167. package/src/components/epi/EpiSequenceDownloadDialog/index.ts +1 -0
  168. package/src/components/epi/EpiStratification/EpiStratification.tsx +241 -0
  169. package/src/components/epi/EpiStratification/index.ts +1 -0
  170. package/src/components/epi/EpiTree/EpiTree.tsx +906 -0
  171. package/src/components/epi/EpiTree/index.ts +1 -0
  172. package/src/components/epi/EpiTreeDescription/EpiTreeDescription.tsx +71 -0
  173. package/src/components/epi/EpiTreeDescription/index.ts +1 -0
  174. package/src/components/epi/EpiUpload/EpiUpload.tsx +107 -0
  175. package/src/components/epi/EpiUpload/EpiUploadCaseResultTable.tsx +383 -0
  176. package/src/components/epi/EpiUpload/EpiUploadCreateCases.tsx +266 -0
  177. package/src/components/epi/EpiUpload/EpiUploadMapColumns.tsx +261 -0
  178. package/src/components/epi/EpiUpload/EpiUploadMapSequences.tsx +332 -0
  179. package/src/components/epi/EpiUpload/EpiUploadNavigation.tsx +52 -0
  180. package/src/components/epi/EpiUpload/EpiUploadSelectFile.tsx +285 -0
  181. package/src/components/epi/EpiUpload/EpiUploadSelectSequenceFiles.tsx +375 -0
  182. package/src/components/epi/EpiUpload/EpiUploadValidate.tsx +199 -0
  183. package/src/components/epi/EpiUpload/EpiUploadValidateNavigation.tsx +34 -0
  184. package/src/components/epi/EpiUpload/index.ts +1 -0
  185. package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialog.tsx +101 -0
  186. package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialogCaseAccessPolicy.tsx +160 -0
  187. package/src/components/epi/EpiUserRightsDialog/index.ts +1 -0
  188. package/src/components/epi/EpiWarning/EpiWarning.tsx +39 -0
  189. package/src/components/epi/EpiWarning/index.ts +1 -0
  190. package/src/components/epi/EpiWidget/EpiWidget.tsx +255 -0
  191. package/src/components/epi/EpiWidget/index.ts +1 -0
  192. package/src/components/epi/EpiWidgetHeaderIconButton/EpiWidgetHeaderIconButton.tsx +40 -0
  193. package/src/components/epi/EpiWidgetHeaderIconButton/index.ts +1 -0
  194. package/src/components/epi/EpiWidgetMenu/EpiWidgetMenu.tsx +56 -0
  195. package/src/components/epi/EpiWidgetMenu/index.ts +1 -0
  196. package/src/components/epi/EpiWidgetUnavailable/EpiWidgetUnavailable.tsx +51 -0
  197. package/src/components/epi/EpiWidgetUnavailable/index.ts +1 -0
  198. package/src/components/filters/BooleanFilterField/BooleanFilterField.tsx +26 -0
  199. package/src/components/filters/BooleanFilterField/index.ts +1 -0
  200. package/src/components/filters/DateFilterField/DateFilterField.tsx +23 -0
  201. package/src/components/filters/DateFilterField/index.ts +1 -0
  202. package/src/components/filters/GeoFilterField/GeoFilterField.tsx +32 -0
  203. package/src/components/filters/GeoFilterField/index.ts +1 -0
  204. package/src/components/filters/MultiSelectFilterField/MultiSelectFilterField.tsx +31 -0
  205. package/src/components/filters/MultiSelectFilterField/index.ts +1 -0
  206. package/src/components/filters/NumberRangeFilterField/NumberRangeFilterField.tsx +20 -0
  207. package/src/components/filters/NumberRangeFilterField/index.ts +1 -0
  208. package/src/components/filters/TextFilterField/TextFilterField.tsx +18 -0
  209. package/src/components/filters/TextFilterField/index.ts +1 -0
  210. package/src/components/form/fields/Autocomplete/Autocomplete.tsx +270 -0
  211. package/src/components/form/fields/Autocomplete/index.ts +1 -0
  212. package/src/components/form/fields/CheckboxGroup/CheckboxGroup.tsx +192 -0
  213. package/src/components/form/fields/CheckboxGroup/index.ts +1 -0
  214. package/src/components/form/fields/DatePicker/DatePicker.tsx +167 -0
  215. package/src/components/form/fields/DatePicker/index.ts +1 -0
  216. package/src/components/form/fields/DateRangePicker/DateRangePicker.tsx +359 -0
  217. package/src/components/form/fields/DateRangePicker/index.ts +1 -0
  218. package/src/components/form/fields/NumberField/NumberField.tsx +277 -0
  219. package/src/components/form/fields/NumberField/index.ts +1 -0
  220. package/src/components/form/fields/NumberRangeInput/NumberRangeInput.tsx +297 -0
  221. package/src/components/form/fields/NumberRangeInput/index.ts +1 -0
  222. package/src/components/form/fields/RadioGroup/RadioGroup.tsx +130 -0
  223. package/src/components/form/fields/RadioGroup/index.ts +1 -0
  224. package/src/components/form/fields/RichTextEditor/RichTextEditor.tsx +321 -0
  225. package/src/components/form/fields/RichTextEditor/RichTextEditorContent.tsx +34 -0
  226. package/src/components/form/fields/RichTextEditor/index.ts +2 -0
  227. package/src/components/form/fields/RichTextEditor/useRichTextEditorExtensions.ts +174 -0
  228. package/src/components/form/fields/Select/Select.tsx +219 -0
  229. package/src/components/form/fields/Select/index.ts +1 -0
  230. package/src/components/form/fields/Switch/Switch.tsx +116 -0
  231. package/src/components/form/fields/Switch/index.ts +1 -0
  232. package/src/components/form/fields/TextField/TextField.tsx +170 -0
  233. package/src/components/form/fields/TextField/index.ts +1 -0
  234. package/src/components/form/fields/ToggleButtonGroup/ToggleButtonGroup.tsx +118 -0
  235. package/src/components/form/fields/ToggleButtonGroup/index.ts +1 -0
  236. package/src/components/form/fields/TransferList/TransferList.tsx +360 -0
  237. package/src/components/form/fields/TransferList/index.ts +1 -0
  238. package/src/components/form/fields/UploadButton/UploadButton.tsx +157 -0
  239. package/src/components/form/helpers/FormFieldHelperText/FormFieldHelperText.tsx +68 -0
  240. package/src/components/form/helpers/FormFieldHelperText/index.ts +1 -0
  241. package/src/components/form/helpers/FormFieldLoadingIndicator/FormFieldLoadingIndicator.tsx +22 -0
  242. package/src/components/form/helpers/FormFieldLoadingIndicator/index.ts +1 -0
  243. package/src/components/form/helpers/GenericForm/GenericForm.tsx +187 -0
  244. package/src/components/form/helpers/GenericForm/index.ts +1 -0
  245. package/src/components/ui/ApplicationBar/ApplicationBar.tsx +74 -0
  246. package/src/components/ui/ApplicationBar/ApplicationBarActions.tsx +124 -0
  247. package/src/components/ui/ApplicationBar/ApplicationBarActionsFeedbackItem.tsx +102 -0
  248. package/src/components/ui/ApplicationBar/ApplicationBarActionsInfotem.tsx +60 -0
  249. package/src/components/ui/ApplicationBar/ApplicationBarActionsNotificationsItem.tsx +82 -0
  250. package/src/components/ui/ApplicationBar/ApplicationBarActionsOrganizationSwitcherItem.tsx +58 -0
  251. package/src/components/ui/ApplicationBar/ApplicationBarActionsOutagesItem.tsx +75 -0
  252. package/src/components/ui/ApplicationBar/ApplicationBarActionsUserItem.tsx +60 -0
  253. package/src/components/ui/ApplicationBar/ApplicationBarNavigationMenu.tsx +159 -0
  254. package/src/components/ui/ApplicationBar/InfoMenu.tsx +120 -0
  255. package/src/components/ui/ApplicationBar/UserMenu.tsx +208 -0
  256. package/src/components/ui/ApplicationBar/UserOrganizationAdminMenuItem.tsx +69 -0
  257. package/src/components/ui/ApplicationBar/UserOwnOrganizationMenuItem.tsx +54 -0
  258. package/src/components/ui/ApplicationBar/index.ts +1 -0
  259. package/src/components/ui/ApplicationFooter/ApplicationFooter.tsx +121 -0
  260. package/src/components/ui/ApplicationFooter/ApplicationFooterLink.tsx +48 -0
  261. package/src/components/ui/ApplicationFooter/ApplicationFooterLinkSection.tsx +56 -0
  262. package/src/components/ui/ApplicationFooter/index.ts +1 -0
  263. package/src/components/ui/AuthenticationWrapper/AuthenticationWrapper.tsx +208 -0
  264. package/src/components/ui/AuthenticationWrapper/index.ts +1 -0
  265. package/src/components/ui/AuthorizationWrapper/AuthorizationWrapper.tsx +75 -0
  266. package/src/components/ui/AuthorizationWrapper/index.ts +1 -0
  267. package/src/components/ui/Breadcrumbs/Breadcrumbs.tsx +92 -0
  268. package/src/components/ui/Breadcrumbs/index.ts +1 -0
  269. package/src/components/ui/Confirmation/Confirmation.tsx +10 -0
  270. package/src/components/ui/Confirmation/ConfirmationRender.tsx +81 -0
  271. package/src/components/ui/Confirmation/index.ts +2 -0
  272. package/src/components/ui/ConsentDialog/ConsentDialog.tsx +57 -0
  273. package/src/components/ui/ConsentDialog/index.ts +1 -0
  274. package/src/components/ui/CopyToClipboardButton/CopyToClipboardButton.tsx +94 -0
  275. package/src/components/ui/CopyToClipboardButton/index.ts +1 -0
  276. package/src/components/ui/Dialog/Dialog.tsx +196 -0
  277. package/src/components/ui/Dialog/index.ts +1 -0
  278. package/src/components/ui/FileSelector/FileSelector.tsx +358 -0
  279. package/src/components/ui/FileSelector/index.ts +1 -0
  280. package/src/components/ui/GenericErrorMessage/GenericErrorMessage.tsx +168 -0
  281. package/src/components/ui/GenericErrorMessage/index.ts +1 -0
  282. package/src/components/ui/HomePageTrends/HomePageTrendCard.tsx +132 -0
  283. package/src/components/ui/HomePageTrends/HomePageTrends.tsx +312 -0
  284. package/src/components/ui/HomePageTrends/index.ts +1 -0
  285. package/src/components/ui/LicensesDialog/LicensesDialog.tsx +231 -0
  286. package/src/components/ui/LicensesDialog/index.ts +1 -0
  287. package/src/components/ui/LinearProgressWithLabel/LinearProgressWithLabel.tsx +31 -0
  288. package/src/components/ui/LinearProgressWithLabel/index.ts +1 -0
  289. package/src/components/ui/LoadingIndicator/LoadingIndicator.tsx +11 -0
  290. package/src/components/ui/LoadingIndicator/index.ts +1 -0
  291. package/src/components/ui/MyPermissionsDialog/MyPermissionsDialog.tsx +95 -0
  292. package/src/components/ui/MyPermissionsDialog/index.ts +1 -0
  293. package/src/components/ui/NavLink/NavLink.tsx +47 -0
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  604. package/src/pages/RouterErrorPage/RouterErrorPage.tsx +23 -0
  605. package/src/pages/RouterErrorPage/index.ts +1 -0
  606. package/src/pages/TrendsPage/TrendsPage.tsx +17 -0
  607. package/src/pages/TrendsPage/index.ts +1 -0
  608. package/src/pages/UploadPage/UploadPage.tsx +40 -0
  609. package/src/pages/UploadPage/index.ts +1 -0
  610. package/src/pages/UserAccessCasePoliciesAdminPage/UserAccessCasePoliciesAdminPage.tsx +209 -0
  611. package/src/pages/UserAccessCasePoliciesAdminPage/index.ts +1 -0
  612. package/src/pages/UserEffectiveRightsAdminPage/UserEffectiveRightsAdminPage.tsx +331 -0
  613. package/src/pages/UserEffectiveRightsAdminPage/index.ts +1 -0
  614. package/src/pages/UserEffectiveRightsTesterAdminPage/UserEffectiveRightsTesterAdminPage.tsx +283 -0
  615. package/src/pages/UserEffectiveRightsTesterAdminPage/index.ts +1 -0
  616. package/src/pages/UserInvitationsAdminPage/UserInvitationConsumeDialog.tsx +143 -0
  617. package/src/pages/UserInvitationsAdminPage/UserInvitationShareDialog.tsx +100 -0
  618. package/src/pages/UserInvitationsAdminPage/UserInvitationsAdminPage.tsx +218 -0
  619. package/src/pages/UserInvitationsAdminPage/index.ts +1 -0
  620. package/src/pages/UserShareCasePoliciesAdminPage/UserShareCasePoliciesAdminPage.tsx +183 -0
  621. package/src/pages/UserShareCasePoliciesAdminPage/index.ts +1 -0
  622. package/src/pages/UsersAdminPage/UsersAdminPage.tsx +240 -0
  623. package/src/pages/UsersAdminPage/index.ts +1 -0
  624. package/src/routes/adminRoutes.tsx +801 -0
  625. package/src/routes/index.ts +2 -0
  626. package/src/routes/routes.tsx +235 -0
  627. package/src/setup/index.ts +1 -0
  628. package/src/setup/setup.ts +5 -0
  629. package/src/setup/yup.ts +203 -0
  630. package/src/stores/epiDashboardStore/epiDashboardStore.ts +750 -0
  631. package/src/stores/epiDashboardStore/epiDashboardStoreContext.tsx +6 -0
  632. package/src/stores/epiDashboardStore/index.ts +2 -0
  633. package/src/stores/epiUploadStore/epiUploadStore.ts +351 -0
  634. package/src/stores/epiUploadStore/epiUploadStoreContext.tsx +6 -0
  635. package/src/stores/epiUploadStore/index.ts +2 -0
  636. package/src/stores/oidcStore/index.ts +1 -0
  637. package/src/stores/oidcStore/oidcStore.ts +43 -0
  638. package/src/stores/outagesStore/index.ts +1 -0
  639. package/src/stores/outagesStore/outagesStore.ts +31 -0
  640. package/src/stores/tableStore/TableStoreContext.tsx +6 -0
  641. package/src/stores/tableStore/TableStoreContextProvider.tsx +20 -0
  642. package/src/stores/tableStore/index.ts +4 -0
  643. package/src/stores/tableStore/tableStore.ts +547 -0
  644. package/src/stores/tableStore/useTableStoreContext.tsx +7 -0
  645. package/src/stores/userProfileStore/index.ts +1 -0
  646. package/src/stores/userProfileStore/userProfileStore.ts +112 -0
  647. package/src/test/integration/lib/render.tsx +33 -0
  648. package/src/test/integration/tests/integration-example/HelloWorld.test.tsx +14 -0
  649. package/src/test/integration/tests/integration-example/HelloWorld.tsx +9 -0
  650. package/src/test/setup-browser.ts +3 -0
  651. package/src/test/setup-jsdom.ts +6 -0
  652. package/src/test/setup.ts +9 -0
  653. package/src/utils/AbacUtil/AbacUtil.ts +21 -0
  654. package/src/utils/AbacUtil/index.ts +1 -0
  655. package/src/utils/AxiosUtil/AxiosUtil.test.ts +66 -0
  656. package/src/utils/AxiosUtil/AxiosUtil.ts +47 -0
  657. package/src/utils/AxiosUtil/index.ts +1 -0
  658. package/src/utils/CaseSelectionUtil/CaseSelectionUtil.ts +32 -0
  659. package/src/utils/CaseSelectionUtil/index.ts +1 -0
  660. package/src/utils/CaseSetUtil/CaseSetUtil.ts +13 -0
  661. package/src/utils/CaseSetUtil/index.ts +1 -0
  662. package/src/utils/CaseTypeUtil/CaseTypeUtil.ts +178 -0
  663. package/src/utils/CaseTypeUtil/index.ts +1 -0
  664. package/src/utils/CaseUtil/CaseUtil.ts +401 -0
  665. package/src/utils/CaseUtil/index.ts +1 -0
  666. package/src/utils/DashboardUtil/DashboardUtil.ts +46 -0
  667. package/src/utils/DashboardUtil/index.ts +1 -0
  668. package/src/utils/DataHookUtil/DataHookUtil.ts +137 -0
  669. package/src/utils/DataHookUtil/index.ts +1 -0
  670. package/src/utils/DataSetUtil/DataSetUtil.ts +70 -0
  671. package/src/utils/DataSetUtil/index.ts +1 -0
  672. package/src/utils/DataUtil/DataUtil.ts +84 -0
  673. package/src/utils/DataUtil/index.ts +1 -0
  674. package/src/utils/DownloadUtil/DownloadUtil.ts +237 -0
  675. package/src/utils/DownloadUtil/index.ts +1 -0
  676. package/src/utils/EffectiveRightsUtil/EffectiveRightsUtil.ts +142 -0
  677. package/src/utils/EffectiveRightsUtil/index.ts +1 -0
  678. package/src/utils/EpiCurveUtil/EpiCurveUtil.ts +180 -0
  679. package/src/utils/EpiCurveUtil/index.ts +1 -0
  680. package/src/utils/EpiFilterUtil/EpiFilterUtil.ts +232 -0
  681. package/src/utils/EpiFilterUtil/index.ts +1 -0
  682. package/src/utils/EpiLineListUtil/EpiLineListUtil.ts +15 -0
  683. package/src/utils/EpiLineListUtil/index.ts +1 -0
  684. package/src/utils/EpiMapUtil/EpiMapUtil.test.ts +54 -0
  685. package/src/utils/EpiMapUtil/EpiMapUtil.ts +80 -0
  686. package/src/utils/EpiMapUtil/index.ts +1 -0
  687. package/src/utils/EpiTreeUtil/EpiTreeUtil.test.ts +2467 -0
  688. package/src/utils/EpiTreeUtil/EpiTreeUtil.ts +1055 -0
  689. package/src/utils/EpiTreeUtil/index.ts +1 -0
  690. package/src/utils/EpiUploadUtil/EpiUploadUtil.ts +857 -0
  691. package/src/utils/EpiUploadUtil/index.ts +1 -0
  692. package/src/utils/FileUtil/FileUtil.ts +22 -0
  693. package/src/utils/FileUtil/index.ts +1 -0
  694. package/src/utils/FormUtil/FormUtil.test.ts +36 -0
  695. package/src/utils/FormUtil/FormUtil.ts +63 -0
  696. package/src/utils/FormUtil/index.ts +1 -0
  697. package/src/utils/MenuDataUtil/MenuDataUtil.ts +54 -0
  698. package/src/utils/MenuDataUtil/index.ts +1 -0
  699. package/src/utils/NewickUtil/NewickUtil.test.ts +187 -0
  700. package/src/utils/NewickUtil/NewickUtil.ts +69 -0
  701. package/src/utils/NewickUtil/index.ts +1 -0
  702. package/src/utils/NotificationUtil/NotificationUtil.ts +28 -0
  703. package/src/utils/NotificationUtil/index.ts +1 -0
  704. package/src/utils/NumberUtil/NumberUtil.test.ts +113 -0
  705. package/src/utils/NumberUtil/NumberUtil.ts +67 -0
  706. package/src/utils/NumberUtil/index.ts +1 -0
  707. package/src/utils/ObjectUtil/ObjectUtil.test.ts +43 -0
  708. package/src/utils/ObjectUtil/ObjectUtil.ts +28 -0
  709. package/src/utils/ObjectUtil/index.ts +1 -0
  710. package/src/utils/OutageUtil/OutageUtil.test.ts +108 -0
  711. package/src/utils/OutageUtil/OutageUtil.ts +81 -0
  712. package/src/utils/OutageUtil/index.ts +1 -0
  713. package/src/utils/QueryUtil/QueryUtil.test.ts +42 -0
  714. package/src/utils/QueryUtil/QueryUtil.ts +105 -0
  715. package/src/utils/QueryUtil/index.ts +1 -0
  716. package/src/utils/StringUtil/StringUtil.test.ts +61 -0
  717. package/src/utils/StringUtil/StringUtil.ts +91 -0
  718. package/src/utils/StringUtil/index.ts +1 -0
  719. package/src/utils/TableUtil/TableUtil.ts +665 -0
  720. package/src/utils/TableUtil/index.ts +1 -0
  721. package/src/utils/TestIdUtil/TestIdUtil.test.ts +12 -0
  722. package/src/utils/TestIdUtil/TestIdUtil.ts +13 -0
  723. package/src/utils/TestIdUtil/index.ts +1 -0
  724. package/src/utils/TimeUtil/TimeUtil.ts +38 -0
  725. package/src/utils/TimeUtil/index.ts +1 -0
  726. package/src/utils/UserManagerUtil/UserManagerUtil.test.ts +41 -0
  727. package/src/utils/UserManagerUtil/UserManagerUtil.ts +39 -0
  728. package/src/utils/UserManagerUtil/index.ts +1 -0
  729. package/src/utils/ValidationUtil/ValidationUtil.test.ts +61 -0
  730. package/src/utils/ValidationUtil/ValidationUtil.ts +56 -0
  731. package/src/utils/ValidationUtil/index.ts +1 -0
  732. package/dist/environment.d.ts +0 -54
  733. package/dist/index.d.ts +0 -16074
  734. /package/{dist → src/@types}/mui.d.ts +0 -0
  735. /package/{dist → src/@types}/ui.d.ts +0 -0
  736. /package/{dist → src/@types}/vite-env.d.ts +0 -0
  737. /package/{dist → src/@types}/yup.d.ts +0 -0
  738. /package/{dist → src}/locale/en.json +0 -0
  739. /package/{dist → src}/locale/nl.json +0 -0
@@ -0,0 +1,6 @@
1
+ import { useContext } from 'react';
2
+
3
+ import type { CaseAbacContext } from './CaseAbacContext';
4
+ import { EpiCaseAbacContext } from './CaseAbacContext';
5
+
6
+ export const useCaseAbacContext = (): CaseAbacContext => useContext(EpiCaseAbacContext);
@@ -0,0 +1,16 @@
1
+ import { createContext } from 'react';
2
+
3
+ import type {
4
+ DataCollection,
5
+ CaseTypeAccessAbac,
6
+ } from '../../api';
7
+
8
+ export type CaseTypeAbacContext = {
9
+ userDataCollections: DataCollection[];
10
+ userDataCollectionsMap: Map<string, DataCollection>;
11
+ caseTypeAccessAbacDict: { [key: string]: CaseTypeAccessAbac };
12
+ caseTypeAccessAbacs?: CaseTypeAccessAbac[];
13
+ effectiveColumnAccessRights?: Map<string, { read: boolean; write: boolean }>;
14
+ };
15
+
16
+ export const EpiCaseTypeAbacContext = createContext<CaseTypeAbacContext>(null);
@@ -0,0 +1,40 @@
1
+ import {
2
+ useMemo,
3
+ type PropsWithChildren,
4
+ } from 'react';
5
+
6
+
7
+ import { AbacUtil } from '../../utils/AbacUtil';
8
+
9
+ import type { CaseTypeAbacContext } from './CaseTypeAbacContext';
10
+ import { EpiCaseTypeAbacContext } from './CaseTypeAbacContext';
11
+
12
+ export type CaseTypeAbacContextProviderProps = PropsWithChildren<{
13
+ readonly caseTypeAbac: CaseTypeAbacContext;
14
+ }>;
15
+
16
+ export const CaseTypeAbacContextProvider = (
17
+ props: CaseTypeAbacContextProviderProps,
18
+ ) => {
19
+ const { children, caseTypeAbac } = props;
20
+
21
+ const sanitizedCaseAbac = useMemo<CaseTypeAbacContext>(() => {
22
+ const caseTypeAccessAbacs = Object.values(caseTypeAbac.caseTypeAccessAbacDict).filter(x => !!caseTypeAbac.userDataCollectionsMap.get(x.data_collection_id)).sort((a, b) => {
23
+ const aDataCollection = caseTypeAbac.userDataCollectionsMap.get(a.data_collection_id);
24
+ const bDataCollection = caseTypeAbac.userDataCollectionsMap.get(b.data_collection_id);
25
+ return aDataCollection?.name.localeCompare(bDataCollection?.name) ?? 0;
26
+ });
27
+
28
+ return {
29
+ ...caseTypeAbac,
30
+ caseTypeAccessAbacs,
31
+ effectiveColumnAccessRights: AbacUtil.createEffectieveColumnAccessRights(caseTypeAccessAbacs),
32
+ } satisfies CaseTypeAbacContext;
33
+ }, [caseTypeAbac]);
34
+
35
+ return (
36
+ <EpiCaseTypeAbacContext.Provider value={sanitizedCaseAbac}>
37
+ {children}
38
+ </EpiCaseTypeAbacContext.Provider>
39
+ );
40
+ };
@@ -0,0 +1,3 @@
1
+ export * from './CaseTypeAbacContextProvider';
2
+ export * from './useCaseTypeAbacContext';
3
+ export * from './CaseTypeAbacContext';
@@ -0,0 +1,6 @@
1
+ import { useContext } from 'react';
2
+
3
+ import type { CaseTypeAbacContext } from './CaseTypeAbacContext';
4
+ import { EpiCaseTypeAbacContext } from './CaseTypeAbacContext';
5
+
6
+ export const useCaseTypeAbacContext = (): CaseTypeAbacContext => useContext(EpiCaseTypeAbacContext);
@@ -0,0 +1,8 @@
1
+ export const DATE_FORMAT = {
2
+ DATE: 'yyyy-MM-dd',
3
+ DATE_TIME: 'yyyy-MM-dd HH:mm:ss',
4
+ YEAR: 'yyyy',
5
+ YEAR_MONTH: 'yyyy-MM',
6
+ YEAR_QUARTER: 'yyyy-QQQ',
7
+ YEAR_WEEK: 'YYYY-\'W\'ww',
8
+ } as const;
@@ -0,0 +1,166 @@
1
+ import { QUERY_KEY } from '../models/query';
2
+
3
+ export const QUERY_DEPENDENCIES: Record<QUERY_KEY, QUERY_KEY[]> = {
4
+ [QUERY_KEY.ASSEMBLY_PROTOCOLS]: [],
5
+ [QUERY_KEY.VALIDATE_CASES]: [],
6
+ [QUERY_KEY.CASE_SET_CATEGORIES]: [],
7
+ [QUERY_KEY.CASE_SET_MEMBERS]: [
8
+ QUERY_KEY.CASE_SET_STATS,
9
+ QUERY_KEY.CASE_IDS_BY_QUERY,
10
+ QUERY_KEY.XXX_CASE_ID_HAS_CASE_SET,
11
+ ],
12
+ [QUERY_KEY.XXX_CASE_ID_HAS_CASE_SET]: [],
13
+ [QUERY_KEY.CASE_SET_STATS]: [],
14
+ [QUERY_KEY.CASE_SET_STATUSES]: [],
15
+ [QUERY_KEY.CASE_SETS]: [
16
+ QUERY_KEY.CASE_SET_STATS,
17
+ QUERY_KEY.XXX_CASE_ID_HAS_CASE_SET,
18
+ QUERY_KEY.USER_ACCESS_CASE_POLICIES,
19
+ QUERY_KEY.ORGANIZATION_ACCESS_CASE_POLICIES,
20
+ ],
21
+ [QUERY_KEY.COL_SET_MEMBERS]: [],
22
+ [QUERY_KEY.COL_SETS]: [
23
+ QUERY_KEY.ORGANIZATION_ACCESS_CASE_POLICIES,
24
+ QUERY_KEY.USER_ACCESS_CASE_POLICIES,
25
+ ],
26
+ [QUERY_KEY.COLS]: [
27
+ QUERY_KEY.COMPLETE_CASE_TYPES,
28
+ ],
29
+ [QUERY_KEY.DIMS]: [
30
+ QUERY_KEY.COLS,
31
+ QUERY_KEY.COMPLETE_CASE_TYPES,
32
+ ],
33
+ [QUERY_KEY.CASE_TYPE_SET_CATEGORIES]: [],
34
+ [QUERY_KEY.CASE_TYPE_SET_MEMBERS]: [],
35
+ [QUERY_KEY.CASE_TYPE_SETS]: [],
36
+ [QUERY_KEY.CASE_TYPE_STATS]: [],
37
+ [QUERY_KEY.CASE_TYPES]: [
38
+ QUERY_KEY.CASE_IDS_BY_QUERY,
39
+ QUERY_KEY.COMPLETE_CASE_TYPES,
40
+ QUERY_KEY.CASE_TYPE_STATS,
41
+ ],
42
+ [QUERY_KEY.CASES]: [
43
+ QUERY_KEY.CASE_TYPE_STATS,
44
+ QUERY_KEY.CASE_SET_STATS,
45
+ QUERY_KEY.CASES_LAZY,
46
+ QUERY_KEY.PHYLOGENETIC_TREE,
47
+ QUERY_KEY.CASE_IDS_BY_QUERY,
48
+ QUERY_KEY.CASE_SET_MEMBERS,
49
+ QUERY_KEY.CASE_DATA_COLLECTION_LINKS,
50
+ ],
51
+ [QUERY_KEY.CASES_LAZY]: [],
52
+ [QUERY_KEY.REF_COLS]: [
53
+ QUERY_KEY.COLS,
54
+ QUERY_KEY.COMPLETE_CASE_TYPES,
55
+ ],
56
+ [QUERY_KEY.COMPLETE_CASE_TYPES]: [],
57
+ [QUERY_KEY.CONCEPT_SETS]: [],
58
+ [QUERY_KEY.CONCEPTS]: [],
59
+ [QUERY_KEY.CONCEPT_RELATIONS]: [], // FIXME
60
+ [QUERY_KEY.DATA_COLLECTIONS]: [
61
+ QUERY_KEY.DATA_COLLECTION_SET_MEMBERS,
62
+ ],
63
+ [QUERY_KEY.DATA_COLLECTION_SETS]: [
64
+ QUERY_KEY.DATA_COLLECTION_SET_MEMBERS,
65
+ ],
66
+ [QUERY_KEY.DATA_COLLECTION_SET_MEMBERS]: [],
67
+ [QUERY_KEY.REF_DIMS]: [
68
+ QUERY_KEY.REF_COLS,
69
+ QUERY_KEY.DIMS,
70
+ QUERY_KEY.COLS,
71
+ QUERY_KEY.COMPLETE_CASE_TYPES,
72
+ ],
73
+ [QUERY_KEY.DISEASES]: [
74
+ QUERY_KEY.COMPLETE_CASE_TYPES,
75
+ ],
76
+ [QUERY_KEY.ETIOLOGICAL_AGENTS]: [
77
+ QUERY_KEY.COMPLETE_CASE_TYPES,
78
+ ],
79
+ [QUERY_KEY.ETIOLOGIES]: [
80
+ QUERY_KEY.COMPLETE_CASE_TYPES,
81
+ ],
82
+ [QUERY_KEY.GENETIC_DISTANCE_PROTOCOLS]: [
83
+ QUERY_KEY.COMPLETE_CASE_TYPES,
84
+ ],
85
+ [QUERY_KEY.IDENTITY_PROVIDERS]: [],
86
+ [QUERY_KEY.ORGANIZATION_ADMIN_NAME_EMAILS]: [],
87
+ [QUERY_KEY.ORGANIZATION_ADMIN_POLICIES]: [
88
+ QUERY_KEY.ORGANIZATION_ADMIN_NAME_EMAILS,
89
+ ],
90
+ [QUERY_KEY.ORGANIZATION_ACCESS_CASE_POLICIES]: [
91
+ QUERY_KEY.COMPLETE_CASE_TYPES,
92
+ ],
93
+ [QUERY_KEY.ORGANIZATION_SHARE_CASE_POLICIES]: [], // FIXME
94
+ [QUERY_KEY.USER_ACCESS_CASE_POLICIES]: [
95
+ QUERY_KEY.COMPLETE_CASE_TYPES,
96
+ ],
97
+ [QUERY_KEY.USER_SHARE_CASE_POLICIES]: [], // FIXME
98
+ [QUERY_KEY.ORGANIZATIONS]: [
99
+ QUERY_KEY.ORGANIZATION_ADMIN_NAME_EMAILS,
100
+ QUERY_KEY.INVITE_USER_CONSTRAINTS,
101
+ ],
102
+ [QUERY_KEY.OUTAGES]: [],
103
+ [QUERY_KEY.PHYLOGENETIC_TREE]: [],
104
+ [QUERY_KEY.REGION_SET_SHAPES]: [],
105
+ [QUERY_KEY.REGION_SETS]: [
106
+ QUERY_KEY.REGION_SETS_LAZY,
107
+ QUERY_KEY.REGIONS,
108
+ ],
109
+ [QUERY_KEY.REGION_SETS_LAZY]: [],
110
+ [QUERY_KEY.REGIONS_LAZY]: [],
111
+ [QUERY_KEY.REGIONS]: [
112
+ QUERY_KEY.REGIONS_LAZY,
113
+ ],
114
+ [QUERY_KEY.REGION_RELATIONS]: [], // FIXME
115
+ [QUERY_KEY.CASE_IDS_BY_QUERY]: [],
116
+ [QUERY_KEY.USER_ME]: [],
117
+ [QUERY_KEY.USER_PERMISSIONS]: [],
118
+ [QUERY_KEY.USER_INVITATIONS]: [
119
+ QUERY_KEY.USERS,
120
+ ],
121
+ [QUERY_KEY.USERS]: [
122
+ QUERY_KEY.USER_ACCESS_CASE_POLICIES,
123
+ QUERY_KEY.USER_PERMISSIONS,
124
+ ],
125
+ [QUERY_KEY.SEQUENCING_PROTOCOLS]: [],
126
+ [QUERY_KEY.GENETIC_SEQUENCES]: [
127
+ QUERY_KEY.COMPLETE_CASE_TYPES,
128
+ QUERY_KEY.PHYLOGENETIC_TREE,
129
+ ],
130
+ [QUERY_KEY.ALLELE_PROFILES]: [
131
+ QUERY_KEY.COMPLETE_CASE_TYPES,
132
+ QUERY_KEY.PHYLOGENETIC_TREE,
133
+ ],
134
+ [QUERY_KEY.SUBJECTS]: [],
135
+ [QUERY_KEY.TREE_ALGORITHM_CLASSES]: [
136
+ QUERY_KEY.COMPLETE_CASE_TYPES,
137
+ ],
138
+ [QUERY_KEY.TREE_ALGORITHMS]: [
139
+ QUERY_KEY.COMPLETE_CASE_TYPES,
140
+ ],
141
+ [QUERY_KEY.CONTACTS]: [],
142
+ [QUERY_KEY.CASE_DATA_COLLECTION_LINKS]: [
143
+ QUERY_KEY.CASE_RIGHTS,
144
+ ],
145
+ [QUERY_KEY.CASE_SET_DATA_COLLECTION_LINKS]: [
146
+ QUERY_KEY.CASE_SET_RIGHTS,
147
+ ],
148
+ [QUERY_KEY.CASE_RIGHTS]: [],
149
+ [QUERY_KEY.CASE_SET_RIGHTS]: [],
150
+ [QUERY_KEY.SITES]: [
151
+ QUERY_KEY.CONTACTS,
152
+ ],
153
+ [QUERY_KEY.LICENSES]: [],
154
+ [QUERY_KEY.INVITE_USER_CONSTRAINTS]: [],
155
+ [QUERY_KEY.IDENTIFIER_ISSUERS_OWN_ORGANIZATION]: [],
156
+ [QUERY_KEY.IDENTIFIER_ISSUERS]: [
157
+ QUERY_KEY.IDENTIFIER_ISSUER_LINKS,
158
+ QUERY_KEY.IDENTIFIER_ISSUERS_OWN_ORGANIZATION,
159
+ ],
160
+ [QUERY_KEY.IDENTIFIER_ISSUER_LINKS]: [
161
+ QUERY_KEY.IDENTIFIER_ISSUERS_OWN_ORGANIZATION,
162
+ ],
163
+ [QUERY_KEY.REF_COLS_VALIDATION_RULES]: [],
164
+ [QUERY_KEY.SIMILAR_CASES]: [],
165
+ [QUERY_KEY.FEATURE_FLAGS]: [],
166
+ };
@@ -0,0 +1 @@
1
+ export * from './useAssemblyProtocolsQuery';
@@ -0,0 +1,39 @@
1
+ import { useMemo } from 'react';
2
+ import { type UseQueryResult } from '@tanstack/react-query';
3
+
4
+ import type { AssemblyProtocol } from '../../api';
5
+ import { CaseApi } from '../../api';
6
+ import type {
7
+ UseMap,
8
+ UseOptions,
9
+ } from '../../models/dataHooks';
10
+ import { QUERY_KEY } from '../../models/query';
11
+ import { DataHookUtil } from '../../utils/DataHookUtil';
12
+ import { QueryUtil } from '../../utils/QueryUtil';
13
+ import { useQueryMemo } from '../../hooks/useQueryMemo';
14
+
15
+ export const useAssemblyProtocolsQuery = (): UseQueryResult<AssemblyProtocol[]> => {
16
+ return useQueryMemo({
17
+ queryKey: QueryUtil.getGenericKey(QUERY_KEY.ASSEMBLY_PROTOCOLS),
18
+ queryFn: async ({ signal }) => {
19
+ const response = await CaseApi.instance.retrieveAssemblyProtocols({ signal });
20
+ return response.data;
21
+ },
22
+ });
23
+ };
24
+
25
+ export const useAssemblyProtocolMapQuery = (): UseMap<AssemblyProtocol> => {
26
+ const response = useAssemblyProtocolsQuery();
27
+
28
+ return useMemo(() => {
29
+ return DataHookUtil.createUseMapDataHook<AssemblyProtocol>(response, item => item.id);
30
+ }, [response]);
31
+ };
32
+
33
+ export const useAssemblyProtocolOptionsQuery = (): UseOptions<string> => {
34
+ const response = useAssemblyProtocolsQuery();
35
+
36
+ return useMemo(() => {
37
+ return DataHookUtil.createUseOptionsDataHook<AssemblyProtocol>(response, item => item.id, (item: AssemblyProtocol) => item.name);
38
+ }, [response]);
39
+ };
@@ -0,0 +1 @@
1
+ export * from './useCaseRightsQuery';
@@ -0,0 +1,21 @@
1
+ import { type UseQueryResult } from '@tanstack/react-query';
2
+
3
+ import type { CaseRights } from '../../api';
4
+ import { CaseApi } from '../../api';
5
+ import { QUERY_KEY } from '../../models/query';
6
+ import { QueryUtil } from '../../utils/QueryUtil';
7
+ import { useQueryMemo } from '../../hooks/useQueryMemo';
8
+
9
+ export const useCaseRightsQuery = (caseIds: string[], caseTypeId: string): UseQueryResult<CaseRights[]> => {
10
+ return useQueryMemo({
11
+ queryKey: QueryUtil.getGenericKey(QUERY_KEY.CASE_RIGHTS, caseIds),
12
+ queryFn: async ({ signal }) => {
13
+ const response = await CaseApi.instance.retrieveCaseRights({
14
+ case_ids: caseIds,
15
+ case_type_id: caseTypeId,
16
+ }, { signal });
17
+ return response.data;
18
+ },
19
+ });
20
+
21
+ };
@@ -0,0 +1 @@
1
+ export * from './useCaseSetCategoriesQuery';
@@ -0,0 +1,39 @@
1
+ import { useMemo } from 'react';
2
+ import { type UseQueryResult } from '@tanstack/react-query';
3
+
4
+ import type { CaseSetCategory } from '../../api';
5
+ import { CaseApi } from '../../api';
6
+ import type {
7
+ UseMap,
8
+ UseOptions,
9
+ } from '../../models/dataHooks';
10
+ import { QUERY_KEY } from '../../models/query';
11
+ import { DataHookUtil } from '../../utils/DataHookUtil';
12
+ import { QueryUtil } from '../../utils/QueryUtil';
13
+ import { useQueryMemo } from '../../hooks/useQueryMemo';
14
+
15
+ export const useCaseSetCategoriesQuery = (): UseQueryResult<CaseSetCategory[]> => {
16
+ return useQueryMemo({
17
+ queryKey: QueryUtil.getGenericKey(QUERY_KEY.CASE_SET_CATEGORIES),
18
+ queryFn: async ({ signal }) => {
19
+ const response = await CaseApi.instance.caseSetCategoriesGetAll({ signal });
20
+ return response.data;
21
+ },
22
+ });
23
+ };
24
+
25
+ export const useCaseSetCategoryMapQuery = (): UseMap<CaseSetCategory> => {
26
+ const response = useCaseSetCategoriesQuery();
27
+
28
+ return useMemo(() => {
29
+ return DataHookUtil.createUseMapDataHook<CaseSetCategory>(response, item => item.id);
30
+ }, [response]);
31
+ };
32
+
33
+ export const useCaseSetCategoryOptionsQuery = (): UseOptions<string> => {
34
+ const response = useCaseSetCategoriesQuery();
35
+
36
+ return useMemo(() => {
37
+ return DataHookUtil.createUseOptionsDataHook<CaseSetCategory>(response, item => item.id, (item: CaseSetCategory) => item.name);
38
+ }, [response]);
39
+ };
@@ -0,0 +1 @@
1
+ export * from './useCaseSetRightsQuery';
@@ -0,0 +1,17 @@
1
+ import { type UseQueryResult } from '@tanstack/react-query';
2
+
3
+ import type { CaseSetRights } from '../../api';
4
+ import { CaseApi } from '../../api';
5
+ import { QUERY_KEY } from '../../models/query';
6
+ import { QueryUtil } from '../../utils/QueryUtil';
7
+ import { useQueryMemo } from '../../hooks/useQueryMemo';
8
+
9
+ export const useCaseSetRightsQuery = (caseSetIds: string[]): UseQueryResult<CaseSetRights[]> => {
10
+ return useQueryMemo({
11
+ queryKey: QueryUtil.getGenericKey(QUERY_KEY.CASE_SET_RIGHTS, caseSetIds),
12
+ queryFn: async ({ signal }) => {
13
+ const response = await CaseApi.instance.retrieveCaseSetRights(caseSetIds, { signal });
14
+ return response.data;
15
+ },
16
+ });
17
+ };
@@ -0,0 +1 @@
1
+ export * from './useCaseSetStatsQuery';
@@ -0,0 +1,31 @@
1
+ import { useMemo } from 'react';
2
+ import { type UseQueryResult } from '@tanstack/react-query';
3
+
4
+ import type { CaseStats } from '../../api';
5
+ import { CaseApi } from '../../api';
6
+ import type { UseMap } from '../../models/dataHooks';
7
+ import { QUERY_KEY } from '../../models/query';
8
+ import { DataHookUtil } from '../../utils/DataHookUtil';
9
+ import { QueryUtil } from '../../utils/QueryUtil';
10
+ import { useQueryMemo } from '../../hooks/useQueryMemo';
11
+
12
+ export const useCaseSetStatsQuery = (caseSetIds: string[]): UseQueryResult<CaseStats[]> => {
13
+ return useQueryMemo({
14
+ queryKey: QueryUtil.getGenericKey(QUERY_KEY.CASE_SET_STATS, caseSetIds),
15
+ queryFn: async ({ signal }) => {
16
+ const response = await CaseApi.instance.retrieveCaseSetStats({
17
+ case_set_ids: caseSetIds,
18
+ }, { signal });
19
+ return response.data;
20
+ },
21
+ enabled: !!caseSetIds?.length,
22
+ });
23
+ };
24
+
25
+ export const useCaseSetStatsMapQuery = (caseSetIds: string[]): UseMap<CaseStats> => {
26
+ const response = useCaseSetStatsQuery(caseSetIds);
27
+
28
+ return useMemo(() => {
29
+ return DataHookUtil.createUseMapDataHook<CaseStats>(response, item => item.case_set_id);
30
+ }, [response]);
31
+ };
@@ -0,0 +1 @@
1
+ export * from './useCaseSetStatusesQuery';
@@ -0,0 +1,39 @@
1
+ import { useMemo } from 'react';
2
+ import { type UseQueryResult } from '@tanstack/react-query';
3
+
4
+ import type { CaseSetStatus } from '../../api';
5
+ import { CaseApi } from '../../api';
6
+ import type {
7
+ UseMap,
8
+ UseOptions,
9
+ } from '../../models/dataHooks';
10
+ import { QUERY_KEY } from '../../models/query';
11
+ import { DataHookUtil } from '../../utils/DataHookUtil';
12
+ import { QueryUtil } from '../../utils/QueryUtil';
13
+ import { useQueryMemo } from '../../hooks/useQueryMemo';
14
+
15
+ export const useCaseSetStatusesQuery = (): UseQueryResult<CaseSetStatus[]> => {
16
+ return useQueryMemo({
17
+ queryKey: QueryUtil.getGenericKey(QUERY_KEY.CASE_SET_STATUSES),
18
+ queryFn: async ({ signal }) => {
19
+ const response = await CaseApi.instance.caseSetStatusesGetAll({ signal });
20
+ return response.data;
21
+ },
22
+ });
23
+ };
24
+
25
+ export const useCaseSetStatusMapQuery = (): UseMap<CaseSetStatus> => {
26
+ const response = useCaseSetStatusesQuery();
27
+
28
+ return useMemo(() => {
29
+ return DataHookUtil.createUseMapDataHook<CaseSetStatus>(response, item => item.id);
30
+ }, [response]);
31
+ };
32
+
33
+ export const useCaseSetStatusOptionsQuery = (): UseOptions<string> => {
34
+ const response = useCaseSetStatusesQuery();
35
+
36
+ return useMemo(() => {
37
+ return DataHookUtil.createUseOptionsDataHook<CaseSetStatus>(response, item => item.id, (item: CaseSetStatus) => item.name);
38
+ }, [response]);
39
+ };
@@ -0,0 +1 @@
1
+ export * from './useCaseSetsQuery';
@@ -0,0 +1,41 @@
1
+ import { useMemo } from 'react';
2
+ import { type UseQueryResult } from '@tanstack/react-query';
3
+
4
+ import type { CaseSet } from '../../api';
5
+ import { CaseApi } from '../../api';
6
+ import type {
7
+ UseMap,
8
+ UseOptions,
9
+ } from '../../models/dataHooks';
10
+ import { QUERY_KEY } from '../../models/query';
11
+ import { DataHookUtil } from '../../utils/DataHookUtil';
12
+ import { QueryUtil } from '../../utils/QueryUtil';
13
+ import { useQueryMemo } from '../../hooks/useQueryMemo';
14
+ import { DataUtil } from '../../utils/DataUtil';
15
+
16
+
17
+ export const useCaseSetsQuery = (): UseQueryResult<CaseSet[]> => {
18
+ return useQueryMemo({
19
+ queryKey: QueryUtil.getGenericKey(QUERY_KEY.CASE_SETS),
20
+ queryFn: async ({ signal }) => {
21
+ const response = await CaseApi.instance.caseSetsGetAll({ signal });
22
+ return response.data;
23
+ },
24
+ });
25
+ };
26
+
27
+ export const useCaseSetsMapQuery = (): UseMap<CaseSet> => {
28
+ const response = useCaseSetsQuery();
29
+
30
+ return useMemo(() => {
31
+ return DataHookUtil.createUseMapDataHook<CaseSet>(response, item => item.id);
32
+ }, [response]);
33
+ };
34
+
35
+ export const useCaseSetOptionsQuery = (): UseOptions<string> => {
36
+ const response = useCaseSetsQuery();
37
+
38
+ return useMemo(() => {
39
+ return DataHookUtil.createUseOptionsDataHook<CaseSet>(response, item => item.id, (item: CaseSet) => DataUtil.getCaseSetName(item));
40
+ }, [response]);
41
+ };
@@ -0,0 +1 @@
1
+ export * from './useCaseTypeSetCategoriesQuery';
@@ -0,0 +1,41 @@
1
+ import { useMemo } from 'react';
2
+ import { type UseQueryResult } from '@tanstack/react-query';
3
+
4
+ import type { CaseTypeSetCategory } from '../../api';
5
+ import { CaseApi } from '../../api';
6
+ import type {
7
+ UseMap,
8
+ UseOptions,
9
+ } from '../../models/dataHooks';
10
+ import { QUERY_KEY } from '../../models/query';
11
+ import { DataHookUtil } from '../../utils/DataHookUtil';
12
+ import { QueryUtil } from '../../utils/QueryUtil';
13
+ import { useQueryMemo } from '../../hooks/useQueryMemo';
14
+
15
+ export const useCaseTypeSetCategoriesQuery = (): UseQueryResult<CaseTypeSetCategory[]> => {
16
+ return useQueryMemo({
17
+ queryKey: QueryUtil.getGenericKey(QUERY_KEY.CASE_TYPE_SET_CATEGORIES),
18
+ queryFn: async ({ signal }) => {
19
+ const response = await CaseApi.instance.caseTypeSetCategoriesGetAll({ signal });
20
+ const items = response.data;
21
+ items.sort((a, b) => a.rank - b.rank);
22
+ return items;
23
+ },
24
+ });
25
+ };
26
+
27
+ export const useCaseTypeSetCategoryMapQuery = (): UseMap<CaseTypeSetCategory> => {
28
+ const response = useCaseTypeSetCategoriesQuery();
29
+
30
+ return useMemo(() => {
31
+ return DataHookUtil.createUseMapDataHook<CaseTypeSetCategory>(response, item => item.id);
32
+ }, [response]);
33
+ };
34
+
35
+ export const useCaseTypeSetCategoryOptionsQuery = (): UseOptions<string> => {
36
+ const response = useCaseTypeSetCategoriesQuery();
37
+
38
+ return useMemo(() => {
39
+ return DataHookUtil.createUseOptionsDataHook<CaseTypeSetCategory>(response, item => item.id, item => item.name);
40
+ }, [response]);
41
+ };
@@ -0,0 +1 @@
1
+ export * from './useCaseTypeSetMembersQuery';
@@ -0,0 +1,17 @@
1
+ import type { UseQueryResult } from '@tanstack/react-query';
2
+
3
+ import type { CaseTypeSetMember } from '../../api';
4
+ import { CaseApi } from '../../api';
5
+ import { QUERY_KEY } from '../../models/query';
6
+ import { QueryUtil } from '../../utils/QueryUtil';
7
+ import { useQueryMemo } from '../../hooks/useQueryMemo';
8
+
9
+ export const useCaseTypeSetMembersQuery = (): UseQueryResult<CaseTypeSetMember[]> => {
10
+ return useQueryMemo({
11
+ queryKey: QueryUtil.getGenericKey(QUERY_KEY.CASE_TYPE_SET_MEMBERS),
12
+ queryFn: async ({ signal }) => {
13
+ const response = await CaseApi.instance.caseTypeSetMembersGetAll({ signal });
14
+ return response.data;
15
+ },
16
+ });
17
+ };
@@ -0,0 +1 @@
1
+ export * from './useCaseTypeSetsQuery';
@@ -0,0 +1,58 @@
1
+ import type { UseQueryResult } from '@tanstack/react-query';
2
+ import { useMemo } from 'react';
3
+
4
+ import type { CaseTypeSet } from '../../api';
5
+ import { CaseApi } from '../../api';
6
+ import type {
7
+ UseMap,
8
+ UseNameFactory,
9
+ UseOptions,
10
+ } from '../../models/dataHooks';
11
+ import { QUERY_KEY } from '../../models/query';
12
+ import { DataHookUtil } from '../../utils/DataHookUtil';
13
+ import { QueryUtil } from '../../utils/QueryUtil';
14
+ import { useCaseTypeSetCategoryMapQuery } from '../useCaseTypeSetCategoriesQuery';
15
+ import { useQueryMemo } from '../../hooks/useQueryMemo';
16
+
17
+ export const useCaseTypeSetsQuery = (): UseQueryResult<CaseTypeSet[]> => {
18
+ return useQueryMemo({
19
+ queryKey: QueryUtil.getGenericKey(QUERY_KEY.CASE_TYPE_SETS),
20
+ queryFn: async ({ signal }) => {
21
+ const response = await CaseApi.instance.caseTypeSetsGetAll({ signal });
22
+ return response.data;
23
+ },
24
+ });
25
+ };
26
+
27
+ export const useCaseTypeSetsMapQuery = (): UseMap<CaseTypeSet> => {
28
+ const caseTypeSetsQuery = useCaseTypeSetsQuery();
29
+
30
+ return useMemo(() => {
31
+ return DataHookUtil.createUseMapDataHook<CaseTypeSet>(caseTypeSetsQuery, item => item.id);
32
+ }, [caseTypeSetsQuery]);
33
+ };
34
+
35
+ export const useCaseTypeSetNameFactory = (): UseNameFactory<CaseTypeSet> => {
36
+ const caseTypeSetCategoryMapQuery = useCaseTypeSetCategoryMapQuery();
37
+
38
+ return useMemo(() => {
39
+ const getName = (item: CaseTypeSet) => {
40
+ return `${caseTypeSetCategoryMapQuery.map.get(item.case_type_set_category_id)?.name ?? ''} | ${item.name}`;
41
+ };
42
+ return DataHookUtil.createUseNameFactoryHook(getName, [caseTypeSetCategoryMapQuery]);
43
+ }, [caseTypeSetCategoryMapQuery]);
44
+ };
45
+
46
+ export const useCaseTypeSetOptionsQuery = (): UseOptions<string> => {
47
+ const caseTypeSetsQuery = useCaseTypeSetsQuery();
48
+ const caseTypeSetNameFactory = useCaseTypeSetNameFactory();
49
+
50
+ return useMemo(() => {
51
+ return DataHookUtil.createUseOptionsDataHook<CaseTypeSet>(
52
+ caseTypeSetsQuery,
53
+ item => item.id,
54
+ caseTypeSetNameFactory.getName,
55
+ [caseTypeSetNameFactory],
56
+ );
57
+ }, [caseTypeSetNameFactory, caseTypeSetsQuery]);
58
+ };
@@ -0,0 +1 @@
1
+ export * from './useCaseTypeStatsQuery';
@@ -0,0 +1,20 @@
1
+ import { type UseQueryResult } from '@tanstack/react-query';
2
+
3
+ import type {
4
+ RetrieveCaseTypeStatsRequestBody,
5
+ CaseStats,
6
+ } from '../../api';
7
+ import { CaseApi } from '../../api';
8
+ import { QUERY_KEY } from '../../models/query';
9
+ import { QueryUtil } from '../../utils/QueryUtil';
10
+ import { useQueryMemo } from '../../hooks/useQueryMemo';
11
+
12
+ export const useCaseTypeStatsQuery = (options?: RetrieveCaseTypeStatsRequestBody): UseQueryResult<CaseStats[]> => {
13
+ return useQueryMemo({
14
+ queryKey: QueryUtil.getGenericKey(QUERY_KEY.CASE_TYPE_STATS, options ?? {}),
15
+ queryFn: async ({ signal }) => {
16
+ const response = await CaseApi.instance.retrieveCaseTypeStats(options ?? {}, { signal });
17
+ return response.data;
18
+ },
19
+ });
20
+ };
@@ -0,0 +1 @@
1
+ export * from './useCaseTypesQuery';