@gen-epix/ui 1.14.4 → 1.15.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (739) hide show
  1. package/README.md +3 -3
  2. package/dist/index.js +27287 -27948
  3. package/package.json +94 -84
  4. package/src/@types/environment.d.ts +54 -0
  5. package/src/api/api.ts +43576 -0
  6. package/src/api/base.ts +111 -0
  7. package/src/api/common.ts +168 -0
  8. package/src/api/configuration.ts +118 -0
  9. package/src/api/index.ts +20 -0
  10. package/src/assets/icons/CollectionIcon.svg +1 -0
  11. package/src/assets/icons/DnaIcon.svg +1 -0
  12. package/src/assets/icons/VirusIcon.svg +1 -0
  13. package/src/assets/logo/logo-rijksoverheid.svg +42 -0
  14. package/src/assets/logo/logo-rivm.svg +6 -0
  15. package/src/classes/Subject/Subject.ts +26 -0
  16. package/src/classes/Subject/index.ts +1 -0
  17. package/src/classes/TableEventBus/TableEventBus.ts +14 -0
  18. package/src/classes/TableEventBus/index.ts +1 -0
  19. package/src/classes/abstracts/EventBusAbstract/EventBusAbstract.ts +37 -0
  20. package/src/classes/abstracts/EventBusAbstract/index.ts +1 -0
  21. package/src/classes/abstracts/FilterAbstract/FilterAbstract.ts +54 -0
  22. package/src/classes/abstracts/FilterAbstract/index.ts +1 -0
  23. package/src/classes/abstracts/SubscribableAbstract/SubscribableAbstract.ts +20 -0
  24. package/src/classes/abstracts/SubscribableAbstract/index.ts +1 -0
  25. package/src/classes/errors/UploadError.ts +11 -0
  26. package/src/classes/errors/index.ts +1 -0
  27. package/src/classes/filters/BooleanFilter.ts +31 -0
  28. package/src/classes/filters/DateFilter.ts +133 -0
  29. package/src/classes/filters/GeoFilter.ts +60 -0
  30. package/src/classes/filters/MultiSelectFilter.ts +70 -0
  31. package/src/classes/filters/NumberRangeFilter.ts +82 -0
  32. package/src/classes/filters/SelectionFilter.ts +25 -0
  33. package/src/classes/filters/TextFilter.ts +36 -0
  34. package/src/classes/filters/TreeFilter.ts +22 -0
  35. package/src/classes/managers/AuthenticationManager/AuthenticationManager.ts +94 -0
  36. package/src/classes/managers/AuthenticationManager/index.ts +1 -0
  37. package/src/classes/managers/AuthorizationManager/AuthorizationManager.ts +70 -0
  38. package/src/classes/managers/AuthorizationManager/index.ts +1 -0
  39. package/src/classes/managers/BackendVersionManager/BackendVersionManager.ts +23 -0
  40. package/src/classes/managers/BackendVersionManager/index.ts +1 -0
  41. package/src/classes/managers/BreadcrumbManager/BreadcrumbManager.ts +30 -0
  42. package/src/classes/managers/BreadcrumbManager/index.ts +1 -0
  43. package/src/classes/managers/ConfigManager/ConfigManager.ts +31 -0
  44. package/src/classes/managers/ConfigManager/index.ts +1 -0
  45. package/src/classes/managers/DevicePixelRatioManager/DevicePixelRatioManager.ts +27 -0
  46. package/src/classes/managers/DevicePixelRatioManager/index.ts +1 -0
  47. package/src/classes/managers/EmotionCacheManager/EmotionCacheManager.ts +27 -0
  48. package/src/classes/managers/EmotionCacheManager/index.ts +1 -0
  49. package/src/classes/managers/EpiDataManager/EpiDataManager.ts +196 -0
  50. package/src/classes/managers/EpiDataManager/index.ts +1 -0
  51. package/src/classes/managers/EpiEventBusManager/EpiEventBusManager.ts +61 -0
  52. package/src/classes/managers/EpiEventBusManager/index.ts +1 -0
  53. package/src/classes/managers/EpiHighlightingManager/EpiHighlightingManager.ts +32 -0
  54. package/src/classes/managers/EpiHighlightingManager/index.ts +1 -0
  55. package/src/classes/managers/EpiLineListCaseSetMembersManager/EpiListsCaseSetMembersManager.ts +118 -0
  56. package/src/classes/managers/EpiLineListCaseSetMembersManager/index.ts +1 -0
  57. package/src/classes/managers/FeatureFlagsManager/FeatureFlagsManager.ts +30 -0
  58. package/src/classes/managers/FeatureFlagsManager/index.ts +1 -0
  59. package/src/classes/managers/I18nManager/I18nManager.ts +105 -0
  60. package/src/classes/managers/I18nManager/index.ts +1 -0
  61. package/src/classes/managers/InactivityManager/InactivityManager.ts +119 -0
  62. package/src/classes/managers/InactivityManager/index.ts +1 -0
  63. package/src/classes/managers/KeyboardShortcutManager/KeyboardShortcutManager.ts +78 -0
  64. package/src/classes/managers/KeyboardShortcutManager/index.ts +1 -0
  65. package/src/classes/managers/LogManager/LogManager.ts +151 -0
  66. package/src/classes/managers/LogManager/index.ts +1 -0
  67. package/src/classes/managers/NavigationHistoryManager/NavigationHistoryManager.ts +16 -0
  68. package/src/classes/managers/NavigationHistoryManager/index.ts +1 -0
  69. package/src/classes/managers/NotificationManager/NotificationManager.ts +104 -0
  70. package/src/classes/managers/NotificationManager/index.ts +1 -0
  71. package/src/classes/managers/PageEventBusManager/PageEventBusManager.ts +116 -0
  72. package/src/classes/managers/PageEventBusManager/index.ts +1 -0
  73. package/src/classes/managers/QueryClientManager/QueryClientManager.ts +51 -0
  74. package/src/classes/managers/QueryClientManager/index.ts +1 -0
  75. package/src/classes/managers/RouterManager/RouterManager.ts +25 -0
  76. package/src/classes/managers/RouterManager/index.ts +1 -0
  77. package/src/classes/managers/UserSettingsManager/UserSettingsManager.ts +16 -0
  78. package/src/classes/managers/UserSettingsManager/index.ts +1 -0
  79. package/src/classes/managers/WindowManager/WindowManager.test.ts +23 -0
  80. package/src/classes/managers/WindowManager/WindowManager.ts +26 -0
  81. package/src/classes/managers/WindowManager/index.ts +1 -0
  82. package/src/components/app/App/App.tsx +58 -0
  83. package/src/components/app/App/index.ts +1 -0
  84. package/src/components/app/ApplicationBootstrap/ApplicationBootstrap.tsx +223 -0
  85. package/src/components/app/ApplicationBootstrap/index.ts +1 -0
  86. package/src/components/app/RouterRoot/RouterRoot.tsx +187 -0
  87. package/src/components/app/RouterRoot/index.ts +1 -0
  88. package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialog.tsx +347 -0
  89. package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialogSuccessNotificationMessage.tsx +38 -0
  90. package/src/components/epi/EpiAddCasesToEventDialog/index.ts +1 -0
  91. package/src/components/epi/EpiBulkEditCaseDialog/EpiBulkEditCaseDialog.tsx +61 -0
  92. package/src/components/epi/EpiBulkEditCaseDialog/index.ts +1 -0
  93. package/src/components/epi/EpiCaseInfoDialog/EpiCaseCaseSetInfo.tsx +137 -0
  94. package/src/components/epi/EpiCaseInfoDialog/EpiCaseContent.tsx +127 -0
  95. package/src/components/epi/EpiCaseInfoDialog/EpiCaseForm.tsx +111 -0
  96. package/src/components/epi/EpiCaseInfoDialog/EpiCaseInfoDialog.tsx +377 -0
  97. package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingForm.tsx +140 -0
  98. package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingInfo.tsx +23 -0
  99. package/src/components/epi/EpiCaseInfoDialog/EpiReadOnlyCaseContent.tsx +89 -0
  100. package/src/components/epi/EpiCaseInfoDialog/index.ts +1 -0
  101. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetContent.tsx +108 -0
  102. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetDescription.tsx +34 -0
  103. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetForm.tsx +151 -0
  104. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetInfoDialog.tsx +389 -0
  105. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingForm.tsx +155 -0
  106. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingInfo.tsx +23 -0
  107. package/src/components/epi/EpiCaseSetInfoDialog/index.ts +1 -0
  108. package/src/components/epi/EpiCaseSummary/EpiCaseSummary.tsx +141 -0
  109. package/src/components/epi/EpiCaseSummary/index.ts +1 -0
  110. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoAccessRights.tsx +91 -0
  111. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoColAccessRights.tsx +118 -0
  112. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoData.tsx +38 -0
  113. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialog.tsx +39 -0
  114. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogContent.tsx +169 -0
  115. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogWithLoader.tsx +42 -0
  116. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoRegions.tsx +87 -0
  117. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoTrees.tsx +73 -0
  118. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoValues.tsx +61 -0
  119. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoVariableDetails.tsx +151 -0
  120. package/src/components/epi/EpiCaseTypeInfoDialog/index.ts +10 -0
  121. package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarning.tsx +190 -0
  122. package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarningCaseSetLink.tsx +62 -0
  123. package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/index.ts +1 -0
  124. package/src/components/epi/EpiCompletCaseTypeLoader/EpiCompletCaseTypeLoader.tsx +87 -0
  125. package/src/components/epi/EpiCompletCaseTypeLoader/index.ts +1 -0
  126. package/src/components/epi/EpiContactDetailsDialog/EpiContactDetailsDialog.tsx +151 -0
  127. package/src/components/epi/EpiContactDetailsDialog/index.ts +1 -0
  128. package/src/components/epi/EpiContextMenu/EpiContextMenu.tsx +155 -0
  129. package/src/components/epi/EpiContextMenu/index.ts +1 -0
  130. package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialog.tsx +386 -0
  131. package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialogSuccessNotificationMessage.tsx +30 -0
  132. package/src/components/epi/EpiCreateEventDialog/index.ts +1 -0
  133. package/src/components/epi/EpiCurve/EpiCurve.tsx +525 -0
  134. package/src/components/epi/EpiCurve/index.ts +1 -0
  135. package/src/components/epi/EpiCustomTabPanel/EpiCustomTabPanel.tsx +27 -0
  136. package/src/components/epi/EpiCustomTabPanel/index.ts +1 -0
  137. package/src/components/epi/EpiDashboard/EpiDashboard.tsx +390 -0
  138. package/src/components/epi/EpiDashboard/EpiDashboardDownloadSidebarItem.tsx +154 -0
  139. package/src/components/epi/EpiDashboard/EpiDashboardGeneralSettingsForm.tsx +89 -0
  140. package/src/components/epi/EpiDashboard/EpiDashboardLayoutRenderer.tsx +248 -0
  141. package/src/components/epi/EpiDashboard/EpiDashboardLayoutSettingsForm.tsx +160 -0
  142. package/src/components/epi/EpiDashboard/EpiDashboardSettingsSidebarItem.tsx +93 -0
  143. package/src/components/epi/EpiDashboard/EpiDashboardTreeSettingsForm.tsx +90 -0
  144. package/src/components/epi/EpiDashboard/index.ts +1 -0
  145. package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoader.tsx +34 -0
  146. package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoaderContent.tsx +73 -0
  147. package/src/components/epi/EpiDashboardStoreLoader/index.ts +2 -0
  148. package/src/components/epi/EpiDashboardStoreLoader/withEpiDashboardStore.tsx +19 -0
  149. package/src/components/epi/EpiDataCollectionAccessInfo/EpiDataCollectionAccessInfo.tsx +88 -0
  150. package/src/components/epi/EpiDataCollectionAccessInfo/index.ts +1 -0
  151. package/src/components/epi/EpiFindSimilarCasesDialog/EpiFindSimilarCasesDialog.tsx +302 -0
  152. package/src/components/epi/EpiFindSimilarCasesDialog/index.ts +1 -0
  153. package/src/components/epi/EpiLegendaItem/EpiLegendaItem.tsx +106 -0
  154. package/src/components/epi/EpiLegendaItem/index.ts +1 -0
  155. package/src/components/epi/EpiLineList/EpiLineList.tsx +492 -0
  156. package/src/components/epi/EpiLineList/EpiLineListPrimaryMenu.tsx +189 -0
  157. package/src/components/epi/EpiLineList/EpiLineListSecondaryMenu.tsx +56 -0
  158. package/src/components/epi/EpiLineList/EpiLineListTitle.tsx +28 -0
  159. package/src/components/epi/EpiLineList/index.ts +1 -0
  160. package/src/components/epi/EpiLineList/useEpiLineListEmitDownloadOptions.tsx +102 -0
  161. package/src/components/epi/EpiMap/EpiMap.tsx +547 -0
  162. package/src/components/epi/EpiMap/index.ts +1 -0
  163. package/src/components/epi/EpiRemoveCasesFromEventDialog/EpiRemoveCasesFromEventDialog.tsx +169 -0
  164. package/src/components/epi/EpiRemoveCasesFromEventDialog/index.ts +1 -0
  165. package/src/components/epi/EpiRemoveFindSimilarCasesResultDialog/EpiRemoveFindSimilarCasesResultDialog.tsx +216 -0
  166. package/src/components/epi/EpiSequenceDownloadDialog/EpiSequenceDownloadDialog.tsx +151 -0
  167. package/src/components/epi/EpiSequenceDownloadDialog/index.ts +1 -0
  168. package/src/components/epi/EpiStratification/EpiStratification.tsx +241 -0
  169. package/src/components/epi/EpiStratification/index.ts +1 -0
  170. package/src/components/epi/EpiTree/EpiTree.tsx +906 -0
  171. package/src/components/epi/EpiTree/index.ts +1 -0
  172. package/src/components/epi/EpiTreeDescription/EpiTreeDescription.tsx +71 -0
  173. package/src/components/epi/EpiTreeDescription/index.ts +1 -0
  174. package/src/components/epi/EpiUpload/EpiUpload.tsx +107 -0
  175. package/src/components/epi/EpiUpload/EpiUploadCaseResultTable.tsx +383 -0
  176. package/src/components/epi/EpiUpload/EpiUploadCreateCases.tsx +266 -0
  177. package/src/components/epi/EpiUpload/EpiUploadMapColumns.tsx +261 -0
  178. package/src/components/epi/EpiUpload/EpiUploadMapSequences.tsx +332 -0
  179. package/src/components/epi/EpiUpload/EpiUploadNavigation.tsx +52 -0
  180. package/src/components/epi/EpiUpload/EpiUploadSelectFile.tsx +285 -0
  181. package/src/components/epi/EpiUpload/EpiUploadSelectSequenceFiles.tsx +375 -0
  182. package/src/components/epi/EpiUpload/EpiUploadValidate.tsx +199 -0
  183. package/src/components/epi/EpiUpload/EpiUploadValidateNavigation.tsx +34 -0
  184. package/src/components/epi/EpiUpload/index.ts +1 -0
  185. package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialog.tsx +101 -0
  186. package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialogCaseAccessPolicy.tsx +160 -0
  187. package/src/components/epi/EpiUserRightsDialog/index.ts +1 -0
  188. package/src/components/epi/EpiWarning/EpiWarning.tsx +39 -0
  189. package/src/components/epi/EpiWarning/index.ts +1 -0
  190. package/src/components/epi/EpiWidget/EpiWidget.tsx +255 -0
  191. package/src/components/epi/EpiWidget/index.ts +1 -0
  192. package/src/components/epi/EpiWidgetHeaderIconButton/EpiWidgetHeaderIconButton.tsx +40 -0
  193. package/src/components/epi/EpiWidgetHeaderIconButton/index.ts +1 -0
  194. package/src/components/epi/EpiWidgetMenu/EpiWidgetMenu.tsx +56 -0
  195. package/src/components/epi/EpiWidgetMenu/index.ts +1 -0
  196. package/src/components/epi/EpiWidgetUnavailable/EpiWidgetUnavailable.tsx +51 -0
  197. package/src/components/epi/EpiWidgetUnavailable/index.ts +1 -0
  198. package/src/components/filters/BooleanFilterField/BooleanFilterField.tsx +26 -0
  199. package/src/components/filters/BooleanFilterField/index.ts +1 -0
  200. package/src/components/filters/DateFilterField/DateFilterField.tsx +23 -0
  201. package/src/components/filters/DateFilterField/index.ts +1 -0
  202. package/src/components/filters/GeoFilterField/GeoFilterField.tsx +32 -0
  203. package/src/components/filters/GeoFilterField/index.ts +1 -0
  204. package/src/components/filters/MultiSelectFilterField/MultiSelectFilterField.tsx +31 -0
  205. package/src/components/filters/MultiSelectFilterField/index.ts +1 -0
  206. package/src/components/filters/NumberRangeFilterField/NumberRangeFilterField.tsx +20 -0
  207. package/src/components/filters/NumberRangeFilterField/index.ts +1 -0
  208. package/src/components/filters/TextFilterField/TextFilterField.tsx +18 -0
  209. package/src/components/filters/TextFilterField/index.ts +1 -0
  210. package/src/components/form/fields/Autocomplete/Autocomplete.tsx +270 -0
  211. package/src/components/form/fields/Autocomplete/index.ts +1 -0
  212. package/src/components/form/fields/CheckboxGroup/CheckboxGroup.tsx +192 -0
  213. package/src/components/form/fields/CheckboxGroup/index.ts +1 -0
  214. package/src/components/form/fields/DatePicker/DatePicker.tsx +167 -0
  215. package/src/components/form/fields/DatePicker/index.ts +1 -0
  216. package/src/components/form/fields/DateRangePicker/DateRangePicker.tsx +359 -0
  217. package/src/components/form/fields/DateRangePicker/index.ts +1 -0
  218. package/src/components/form/fields/NumberField/NumberField.tsx +277 -0
  219. package/src/components/form/fields/NumberField/index.ts +1 -0
  220. package/src/components/form/fields/NumberRangeInput/NumberRangeInput.tsx +297 -0
  221. package/src/components/form/fields/NumberRangeInput/index.ts +1 -0
  222. package/src/components/form/fields/RadioGroup/RadioGroup.tsx +130 -0
  223. package/src/components/form/fields/RadioGroup/index.ts +1 -0
  224. package/src/components/form/fields/RichTextEditor/RichTextEditor.tsx +321 -0
  225. package/src/components/form/fields/RichTextEditor/RichTextEditorContent.tsx +34 -0
  226. package/src/components/form/fields/RichTextEditor/index.ts +2 -0
  227. package/src/components/form/fields/RichTextEditor/useRichTextEditorExtensions.ts +174 -0
  228. package/src/components/form/fields/Select/Select.tsx +219 -0
  229. package/src/components/form/fields/Select/index.ts +1 -0
  230. package/src/components/form/fields/Switch/Switch.tsx +116 -0
  231. package/src/components/form/fields/Switch/index.ts +1 -0
  232. package/src/components/form/fields/TextField/TextField.tsx +170 -0
  233. package/src/components/form/fields/TextField/index.ts +1 -0
  234. package/src/components/form/fields/ToggleButtonGroup/ToggleButtonGroup.tsx +118 -0
  235. package/src/components/form/fields/ToggleButtonGroup/index.ts +1 -0
  236. package/src/components/form/fields/TransferList/TransferList.tsx +360 -0
  237. package/src/components/form/fields/TransferList/index.ts +1 -0
  238. package/src/components/form/fields/UploadButton/UploadButton.tsx +157 -0
  239. package/src/components/form/helpers/FormFieldHelperText/FormFieldHelperText.tsx +68 -0
  240. package/src/components/form/helpers/FormFieldHelperText/index.ts +1 -0
  241. package/src/components/form/helpers/FormFieldLoadingIndicator/FormFieldLoadingIndicator.tsx +22 -0
  242. package/src/components/form/helpers/FormFieldLoadingIndicator/index.ts +1 -0
  243. package/src/components/form/helpers/GenericForm/GenericForm.tsx +187 -0
  244. package/src/components/form/helpers/GenericForm/index.ts +1 -0
  245. package/src/components/ui/ApplicationBar/ApplicationBar.tsx +74 -0
  246. package/src/components/ui/ApplicationBar/ApplicationBarActions.tsx +124 -0
  247. package/src/components/ui/ApplicationBar/ApplicationBarActionsFeedbackItem.tsx +102 -0
  248. package/src/components/ui/ApplicationBar/ApplicationBarActionsInfotem.tsx +60 -0
  249. package/src/components/ui/ApplicationBar/ApplicationBarActionsNotificationsItem.tsx +82 -0
  250. package/src/components/ui/ApplicationBar/ApplicationBarActionsOrganizationSwitcherItem.tsx +58 -0
  251. package/src/components/ui/ApplicationBar/ApplicationBarActionsOutagesItem.tsx +75 -0
  252. package/src/components/ui/ApplicationBar/ApplicationBarActionsUserItem.tsx +60 -0
  253. package/src/components/ui/ApplicationBar/ApplicationBarNavigationMenu.tsx +159 -0
  254. package/src/components/ui/ApplicationBar/InfoMenu.tsx +120 -0
  255. package/src/components/ui/ApplicationBar/UserMenu.tsx +208 -0
  256. package/src/components/ui/ApplicationBar/UserOrganizationAdminMenuItem.tsx +69 -0
  257. package/src/components/ui/ApplicationBar/UserOwnOrganizationMenuItem.tsx +54 -0
  258. package/src/components/ui/ApplicationBar/index.ts +1 -0
  259. package/src/components/ui/ApplicationFooter/ApplicationFooter.tsx +121 -0
  260. package/src/components/ui/ApplicationFooter/ApplicationFooterLink.tsx +48 -0
  261. package/src/components/ui/ApplicationFooter/ApplicationFooterLinkSection.tsx +56 -0
  262. package/src/components/ui/ApplicationFooter/index.ts +1 -0
  263. package/src/components/ui/AuthenticationWrapper/AuthenticationWrapper.tsx +208 -0
  264. package/src/components/ui/AuthenticationWrapper/index.ts +1 -0
  265. package/src/components/ui/AuthorizationWrapper/AuthorizationWrapper.tsx +75 -0
  266. package/src/components/ui/AuthorizationWrapper/index.ts +1 -0
  267. package/src/components/ui/Breadcrumbs/Breadcrumbs.tsx +92 -0
  268. package/src/components/ui/Breadcrumbs/index.ts +1 -0
  269. package/src/components/ui/Confirmation/Confirmation.tsx +10 -0
  270. package/src/components/ui/Confirmation/ConfirmationRender.tsx +81 -0
  271. package/src/components/ui/Confirmation/index.ts +2 -0
  272. package/src/components/ui/ConsentDialog/ConsentDialog.tsx +57 -0
  273. package/src/components/ui/ConsentDialog/index.ts +1 -0
  274. package/src/components/ui/CopyToClipboardButton/CopyToClipboardButton.tsx +94 -0
  275. package/src/components/ui/CopyToClipboardButton/index.ts +1 -0
  276. package/src/components/ui/Dialog/Dialog.tsx +196 -0
  277. package/src/components/ui/Dialog/index.ts +1 -0
  278. package/src/components/ui/FileSelector/FileSelector.tsx +358 -0
  279. package/src/components/ui/FileSelector/index.ts +1 -0
  280. package/src/components/ui/GenericErrorMessage/GenericErrorMessage.tsx +168 -0
  281. package/src/components/ui/GenericErrorMessage/index.ts +1 -0
  282. package/src/components/ui/HomePageTrends/HomePageTrendCard.tsx +132 -0
  283. package/src/components/ui/HomePageTrends/HomePageTrends.tsx +312 -0
  284. package/src/components/ui/HomePageTrends/index.ts +1 -0
  285. package/src/components/ui/LicensesDialog/LicensesDialog.tsx +231 -0
  286. package/src/components/ui/LicensesDialog/index.ts +1 -0
  287. package/src/components/ui/LinearProgressWithLabel/LinearProgressWithLabel.tsx +31 -0
  288. package/src/components/ui/LinearProgressWithLabel/index.ts +1 -0
  289. package/src/components/ui/LoadingIndicator/LoadingIndicator.tsx +11 -0
  290. package/src/components/ui/LoadingIndicator/index.ts +1 -0
  291. package/src/components/ui/MyPermissionsDialog/MyPermissionsDialog.tsx +95 -0
  292. package/src/components/ui/MyPermissionsDialog/index.ts +1 -0
  293. package/src/components/ui/NavLink/NavLink.tsx +47 -0
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  604. package/src/pages/RouterErrorPage/RouterErrorPage.tsx +23 -0
  605. package/src/pages/RouterErrorPage/index.ts +1 -0
  606. package/src/pages/TrendsPage/TrendsPage.tsx +17 -0
  607. package/src/pages/TrendsPage/index.ts +1 -0
  608. package/src/pages/UploadPage/UploadPage.tsx +40 -0
  609. package/src/pages/UploadPage/index.ts +1 -0
  610. package/src/pages/UserAccessCasePoliciesAdminPage/UserAccessCasePoliciesAdminPage.tsx +209 -0
  611. package/src/pages/UserAccessCasePoliciesAdminPage/index.ts +1 -0
  612. package/src/pages/UserEffectiveRightsAdminPage/UserEffectiveRightsAdminPage.tsx +331 -0
  613. package/src/pages/UserEffectiveRightsAdminPage/index.ts +1 -0
  614. package/src/pages/UserEffectiveRightsTesterAdminPage/UserEffectiveRightsTesterAdminPage.tsx +283 -0
  615. package/src/pages/UserEffectiveRightsTesterAdminPage/index.ts +1 -0
  616. package/src/pages/UserInvitationsAdminPage/UserInvitationConsumeDialog.tsx +143 -0
  617. package/src/pages/UserInvitationsAdminPage/UserInvitationShareDialog.tsx +100 -0
  618. package/src/pages/UserInvitationsAdminPage/UserInvitationsAdminPage.tsx +218 -0
  619. package/src/pages/UserInvitationsAdminPage/index.ts +1 -0
  620. package/src/pages/UserShareCasePoliciesAdminPage/UserShareCasePoliciesAdminPage.tsx +183 -0
  621. package/src/pages/UserShareCasePoliciesAdminPage/index.ts +1 -0
  622. package/src/pages/UsersAdminPage/UsersAdminPage.tsx +240 -0
  623. package/src/pages/UsersAdminPage/index.ts +1 -0
  624. package/src/routes/adminRoutes.tsx +801 -0
  625. package/src/routes/index.ts +2 -0
  626. package/src/routes/routes.tsx +235 -0
  627. package/src/setup/index.ts +1 -0
  628. package/src/setup/setup.ts +5 -0
  629. package/src/setup/yup.ts +203 -0
  630. package/src/stores/epiDashboardStore/epiDashboardStore.ts +750 -0
  631. package/src/stores/epiDashboardStore/epiDashboardStoreContext.tsx +6 -0
  632. package/src/stores/epiDashboardStore/index.ts +2 -0
  633. package/src/stores/epiUploadStore/epiUploadStore.ts +351 -0
  634. package/src/stores/epiUploadStore/epiUploadStoreContext.tsx +6 -0
  635. package/src/stores/epiUploadStore/index.ts +2 -0
  636. package/src/stores/oidcStore/index.ts +1 -0
  637. package/src/stores/oidcStore/oidcStore.ts +43 -0
  638. package/src/stores/outagesStore/index.ts +1 -0
  639. package/src/stores/outagesStore/outagesStore.ts +31 -0
  640. package/src/stores/tableStore/TableStoreContext.tsx +6 -0
  641. package/src/stores/tableStore/TableStoreContextProvider.tsx +20 -0
  642. package/src/stores/tableStore/index.ts +4 -0
  643. package/src/stores/tableStore/tableStore.ts +547 -0
  644. package/src/stores/tableStore/useTableStoreContext.tsx +7 -0
  645. package/src/stores/userProfileStore/index.ts +1 -0
  646. package/src/stores/userProfileStore/userProfileStore.ts +112 -0
  647. package/src/test/integration/lib/render.tsx +33 -0
  648. package/src/test/integration/tests/integration-example/HelloWorld.test.tsx +14 -0
  649. package/src/test/integration/tests/integration-example/HelloWorld.tsx +9 -0
  650. package/src/test/setup-browser.ts +3 -0
  651. package/src/test/setup-jsdom.ts +6 -0
  652. package/src/test/setup.ts +9 -0
  653. package/src/utils/AbacUtil/AbacUtil.ts +21 -0
  654. package/src/utils/AbacUtil/index.ts +1 -0
  655. package/src/utils/AxiosUtil/AxiosUtil.test.ts +66 -0
  656. package/src/utils/AxiosUtil/AxiosUtil.ts +47 -0
  657. package/src/utils/AxiosUtil/index.ts +1 -0
  658. package/src/utils/CaseSelectionUtil/CaseSelectionUtil.ts +32 -0
  659. package/src/utils/CaseSelectionUtil/index.ts +1 -0
  660. package/src/utils/CaseSetUtil/CaseSetUtil.ts +13 -0
  661. package/src/utils/CaseSetUtil/index.ts +1 -0
  662. package/src/utils/CaseTypeUtil/CaseTypeUtil.ts +178 -0
  663. package/src/utils/CaseTypeUtil/index.ts +1 -0
  664. package/src/utils/CaseUtil/CaseUtil.ts +401 -0
  665. package/src/utils/CaseUtil/index.ts +1 -0
  666. package/src/utils/DashboardUtil/DashboardUtil.ts +46 -0
  667. package/src/utils/DashboardUtil/index.ts +1 -0
  668. package/src/utils/DataHookUtil/DataHookUtil.ts +137 -0
  669. package/src/utils/DataHookUtil/index.ts +1 -0
  670. package/src/utils/DataSetUtil/DataSetUtil.ts +70 -0
  671. package/src/utils/DataSetUtil/index.ts +1 -0
  672. package/src/utils/DataUtil/DataUtil.ts +84 -0
  673. package/src/utils/DataUtil/index.ts +1 -0
  674. package/src/utils/DownloadUtil/DownloadUtil.ts +237 -0
  675. package/src/utils/DownloadUtil/index.ts +1 -0
  676. package/src/utils/EffectiveRightsUtil/EffectiveRightsUtil.ts +142 -0
  677. package/src/utils/EffectiveRightsUtil/index.ts +1 -0
  678. package/src/utils/EpiCurveUtil/EpiCurveUtil.ts +180 -0
  679. package/src/utils/EpiCurveUtil/index.ts +1 -0
  680. package/src/utils/EpiFilterUtil/EpiFilterUtil.ts +232 -0
  681. package/src/utils/EpiFilterUtil/index.ts +1 -0
  682. package/src/utils/EpiLineListUtil/EpiLineListUtil.ts +15 -0
  683. package/src/utils/EpiLineListUtil/index.ts +1 -0
  684. package/src/utils/EpiMapUtil/EpiMapUtil.test.ts +54 -0
  685. package/src/utils/EpiMapUtil/EpiMapUtil.ts +80 -0
  686. package/src/utils/EpiMapUtil/index.ts +1 -0
  687. package/src/utils/EpiTreeUtil/EpiTreeUtil.test.ts +2467 -0
  688. package/src/utils/EpiTreeUtil/EpiTreeUtil.ts +1055 -0
  689. package/src/utils/EpiTreeUtil/index.ts +1 -0
  690. package/src/utils/EpiUploadUtil/EpiUploadUtil.ts +857 -0
  691. package/src/utils/EpiUploadUtil/index.ts +1 -0
  692. package/src/utils/FileUtil/FileUtil.ts +22 -0
  693. package/src/utils/FileUtil/index.ts +1 -0
  694. package/src/utils/FormUtil/FormUtil.test.ts +36 -0
  695. package/src/utils/FormUtil/FormUtil.ts +63 -0
  696. package/src/utils/FormUtil/index.ts +1 -0
  697. package/src/utils/MenuDataUtil/MenuDataUtil.ts +54 -0
  698. package/src/utils/MenuDataUtil/index.ts +1 -0
  699. package/src/utils/NewickUtil/NewickUtil.test.ts +187 -0
  700. package/src/utils/NewickUtil/NewickUtil.ts +69 -0
  701. package/src/utils/NewickUtil/index.ts +1 -0
  702. package/src/utils/NotificationUtil/NotificationUtil.ts +28 -0
  703. package/src/utils/NotificationUtil/index.ts +1 -0
  704. package/src/utils/NumberUtil/NumberUtil.test.ts +113 -0
  705. package/src/utils/NumberUtil/NumberUtil.ts +67 -0
  706. package/src/utils/NumberUtil/index.ts +1 -0
  707. package/src/utils/ObjectUtil/ObjectUtil.test.ts +43 -0
  708. package/src/utils/ObjectUtil/ObjectUtil.ts +28 -0
  709. package/src/utils/ObjectUtil/index.ts +1 -0
  710. package/src/utils/OutageUtil/OutageUtil.test.ts +108 -0
  711. package/src/utils/OutageUtil/OutageUtil.ts +81 -0
  712. package/src/utils/OutageUtil/index.ts +1 -0
  713. package/src/utils/QueryUtil/QueryUtil.test.ts +42 -0
  714. package/src/utils/QueryUtil/QueryUtil.ts +105 -0
  715. package/src/utils/QueryUtil/index.ts +1 -0
  716. package/src/utils/StringUtil/StringUtil.test.ts +61 -0
  717. package/src/utils/StringUtil/StringUtil.ts +91 -0
  718. package/src/utils/StringUtil/index.ts +1 -0
  719. package/src/utils/TableUtil/TableUtil.ts +665 -0
  720. package/src/utils/TableUtil/index.ts +1 -0
  721. package/src/utils/TestIdUtil/TestIdUtil.test.ts +12 -0
  722. package/src/utils/TestIdUtil/TestIdUtil.ts +13 -0
  723. package/src/utils/TestIdUtil/index.ts +1 -0
  724. package/src/utils/TimeUtil/TimeUtil.ts +38 -0
  725. package/src/utils/TimeUtil/index.ts +1 -0
  726. package/src/utils/UserManagerUtil/UserManagerUtil.test.ts +41 -0
  727. package/src/utils/UserManagerUtil/UserManagerUtil.ts +39 -0
  728. package/src/utils/UserManagerUtil/index.ts +1 -0
  729. package/src/utils/ValidationUtil/ValidationUtil.test.ts +61 -0
  730. package/src/utils/ValidationUtil/ValidationUtil.ts +56 -0
  731. package/src/utils/ValidationUtil/index.ts +1 -0
  732. package/dist/environment.d.ts +0 -54
  733. package/dist/index.d.ts +0 -16074
  734. /package/{dist → src/@types}/mui.d.ts +0 -0
  735. /package/{dist → src/@types}/ui.d.ts +0 -0
  736. /package/{dist → src/@types}/vite-env.d.ts +0 -0
  737. /package/{dist → src/@types}/yup.d.ts +0 -0
  738. /package/{dist → src}/locale/en.json +0 -0
  739. /package/{dist → src}/locale/nl.json +0 -0
@@ -0,0 +1,492 @@
1
+ import {
2
+ Box,
3
+ CircularProgress,
4
+ Link,
5
+ Tooltip,
6
+ useTheme,
7
+ } from '@mui/material';
8
+ import type { ReactElement } from 'react';
9
+ import {
10
+ useCallback,
11
+ useContext,
12
+ useEffect,
13
+ useMemo,
14
+ useRef,
15
+ } from 'react';
16
+ import { useTranslation } from 'react-i18next';
17
+ import { useStore } from 'zustand';
18
+ import { useDebouncedCallback } from 'use-debounce';
19
+ import type { ListRange } from 'react-virtuoso';
20
+ import TroubleshootIcon from '@mui/icons-material/Troubleshoot';
21
+
22
+ import CollectionIcon from '../../../assets/icons/CollectionIcon.svg?react';
23
+ import { EpiWidget } from '../EpiWidget';
24
+ import { EpiLegendaItem } from '../EpiLegendaItem';
25
+ import type {
26
+ CaseSet,
27
+ Case,
28
+ Col,
29
+ } from '../../../api';
30
+ import { ColType } from '../../../api';
31
+ import { ConfigManager } from '../../../classes/managers/ConfigManager';
32
+ import { EpiEventBusManager } from '../../../classes/managers/EpiEventBusManager';
33
+ import { EpiLineListCaseSetMembersManager } from '../../../classes/managers/EpiLineListCaseSetMembersManager';
34
+ import { EpiHighlightingManager } from '../../../classes/managers/EpiHighlightingManager';
35
+ import { Subject } from '../../../classes/Subject';
36
+ import type { EpiLinkedScrollSubjectValue } from '../../../models/epi';
37
+ import {
38
+ EPI_ZONE,
39
+ STRATIFICATION_MODE,
40
+ } from '../../../models/epi';
41
+ import type {
42
+ TableColumn,
43
+ TableRowParams,
44
+ GetTableCellRowComparatorProps,
45
+ TableColumnCaseType,
46
+ } from '../../../models/table';
47
+ import { EpiDashboardStoreContext } from '../../../stores/epiDashboardStore';
48
+ import { CaseTypeUtil } from '../../../utils/CaseTypeUtil';
49
+ import { CaseUtil } from '../../../utils/CaseUtil';
50
+ import { StringUtil } from '../../../utils/StringUtil';
51
+ import { TableUtil } from '../../../utils/TableUtil';
52
+ import {
53
+ Table,
54
+ type TableRef,
55
+ } from '../../ui/Table';
56
+
57
+ import { EpiLineListTitle } from './EpiLineListTitle';
58
+ import { EpiLineListPrimaryMenu } from './EpiLineListPrimaryMenu';
59
+ import { EpiLineListSecondaryMenu } from './EpiLineListSecondaryMenu';
60
+ import { useEpiLineListEmitDownloadOptions } from './useEpiLineListEmitDownloadOptions';
61
+
62
+ export type EpiLineListProps = {
63
+ readonly linkedScrollSubject: Subject<EpiLinkedScrollSubjectValue>;
64
+ readonly onLink: () => void;
65
+ readonly caseSet?: CaseSet;
66
+ };
67
+
68
+ export const EpiLineList = ({ linkedScrollSubject, onLink, caseSet }: EpiLineListProps) => {
69
+ const containerRef = useRef<HTMLDivElement>(null);
70
+ const { t } = useTranslation();
71
+ const theme = useTheme();
72
+ const highlightingManager = useMemo(() => EpiHighlightingManager.instance, []);
73
+ const rowHighlightingSubject = useMemo(() => new Subject<string[]>([]), []);
74
+ const tableRef = useRef<TableRef>(null);
75
+
76
+ const epiDashboardStore = useContext(EpiDashboardStoreContext);
77
+ const completeCaseType = useStore(epiDashboardStore, (state) => state.completeCaseType);
78
+ const sortedData = useStore(epiDashboardStore, (state) => state.sortedData);
79
+ const stratification = useStore(epiDashboardStore, (state) => state.stratification?.mode === STRATIFICATION_MODE.FIELD ? state.stratification : null);
80
+ const updateEpiListWidgetData = useStore(epiDashboardStore, (state) => state.updateEpiListWidgetData);
81
+ const treeAddresses = useStore(epiDashboardStore, (state) => state.treeAddresses);
82
+ const setTableColumns = useStore(epiDashboardStore, (state) => state.setColumns);
83
+ const isDataLoading = useStore(epiDashboardStore, (state) => state.isDataLoading);
84
+
85
+ const onIndexCellClick = useCallback((row: Case) => {
86
+ EpiEventBusManager.instance.emit('openCaseInfoDialog', {
87
+ caseId: row.id,
88
+ caseTypeId: completeCaseType.id,
89
+ });
90
+ }, [completeCaseType.id]);
91
+
92
+ const getColumnWidth = useCallback((col: Col, label: string) => {
93
+ let maxTextLength = label?.length * 0.8;
94
+ sortedData.forEach(row => {
95
+ const value = CaseUtil.getRowValue(row.content, col, completeCaseType).short;
96
+ if (value?.length > maxTextLength) {
97
+ maxTextLength = value.length;
98
+ }
99
+ });
100
+
101
+ let maxWidth = +theme.spacing(5).replace('px', '') + maxTextLength * 7;
102
+ if (stratification?.col?.id === col.id) {
103
+ maxWidth = maxWidth + +theme.spacing(3).replace('px', '');
104
+ }
105
+
106
+ const { MAX_COLUMN_WIDTH, REQUIRED_EXTRA_CELL_PADDING_TO_FIT_CONTENT } = ConfigManager.instance.config.epiLineList;
107
+ return Math.min(MAX_COLUMN_WIDTH, maxWidth) + REQUIRED_EXTRA_CELL_PADDING_TO_FIT_CONTENT;
108
+ }, [completeCaseType, sortedData, stratification?.col?.id, theme]);
109
+
110
+ const onOrganizationCellClick = useCallback((organizationId: string, organizationName: string) => {
111
+ EpiEventBusManager.instance.emit('openContactDetailsDialog', {
112
+ organizationId,
113
+ organizationName,
114
+ });
115
+ }, []);
116
+
117
+ const renderOrganizationCell = useCallback(({ id, row }: TableRowParams<Case>) => {
118
+ const rowValue = CaseUtil.getRowValue(row.content, completeCaseType.cols[id], completeCaseType);
119
+ if (rowValue.isMissing) {
120
+ return rowValue.short;
121
+ }
122
+ const link = (
123
+ <Link
124
+ component={'button'}
125
+ sx={{
126
+ cursor: 'pointer',
127
+ }}
128
+ color={'primary'}
129
+ // eslint-disable-next-line react/jsx-no-bind
130
+ onClick={() => {
131
+ onOrganizationCellClick(row.content[id], rowValue.long);
132
+ }}
133
+ >
134
+ {rowValue.short}
135
+ </Link>
136
+ );
137
+ if (id === stratification?.col?.id) {
138
+ return (
139
+ <EpiLegendaItem
140
+ color={stratification?.caseIdColors[row.id]}
141
+ rowValue={rowValue}
142
+ >
143
+ {link}
144
+ </EpiLegendaItem>
145
+ );
146
+ }
147
+ return link;
148
+ }, [completeCaseType, onOrganizationCellClick, stratification?.caseIdColors, stratification?.col?.id]);
149
+
150
+ const onGeneticSequenceCellClick = useCallback((id: string, row: Case) => {
151
+ EpiEventBusManager.instance.emit('openSequenceDownloadDialog', {
152
+ geneticSequenceColId: id,
153
+ cases: [row],
154
+ });
155
+ }, []);
156
+
157
+ const renderGeneticSequenceCell = useCallback(({ id, row }: TableRowParams<Case>) => {
158
+ return (
159
+ <Link
160
+ component={'button'}
161
+ sx={{
162
+ cursor: 'pointer',
163
+ }}
164
+ color={'primary'}
165
+ // eslint-disable-next-line react/jsx-no-bind
166
+ onClick={() => {
167
+ onGeneticSequenceCellClick(id, row);
168
+ }}
169
+ >
170
+ {row.content[id]}
171
+ </Link>
172
+ );
173
+ }, [onGeneticSequenceCellClick]);
174
+
175
+ const renderEventsHeader = useCallback(() => {
176
+ return (
177
+ <Tooltip
178
+ arrow
179
+ title={t('Indicates if case is in an event')}
180
+ aria-hidden={false}
181
+ >
182
+ <CollectionIcon
183
+ style={{
184
+ color: theme.palette.primary.main,
185
+ position: 'absolute',
186
+ width: 20,
187
+ height: 20,
188
+ marginLeft: theme.spacing(-0.5),
189
+ }}
190
+ fontSize={'small'}
191
+ />
192
+ </Tooltip>
193
+ );
194
+ }, [t, theme]);
195
+
196
+ const renderEventsCell = useCallback(({ row }: TableRowParams<Case>) => {
197
+ let queryResult;
198
+ const rowId = `row_${row.id}`;
199
+
200
+ EpiLineListCaseSetMembersManager.instance.query(row.id).then(result => {
201
+ queryResult = result;
202
+ const element = document.getElementById(rowId);
203
+ if (element) {
204
+ element.innerHTML = queryResult ? '✓' : '';
205
+ }
206
+ }).catch(() => {
207
+ const element = document.getElementById(rowId);
208
+ if (element) {
209
+ element.innerHTML = '?';
210
+ }
211
+ });
212
+ return (
213
+ <Box id={rowId}>
214
+ <CircularProgress
215
+ size={16}
216
+ sx={{
217
+ position: 'absolute',
218
+ marginTop: '4px',
219
+ }}
220
+ />
221
+ </Box>
222
+ );
223
+ }, []);
224
+
225
+ const renderSimilarCell = useCallback(({ row }: TableRowParams<Case>) => {
226
+ const similarCaseIds = epiDashboardStore.getState().findSimilarCasesResults.reduce<string[]>((acc, result) => [...acc, ...result.similarCaseIds], []);
227
+ if (similarCaseIds.includes(row.id)) {
228
+ return (
229
+ <Box>
230
+ {`✓`}
231
+ </Box>
232
+ );
233
+ }
234
+ return null;
235
+ }, [epiDashboardStore]);
236
+
237
+
238
+ const renderSimilarHeader = useCallback(() => {
239
+ return (
240
+ <Tooltip
241
+ arrow
242
+ title={t('Indicates if the case has been identified as similar to another case based on the selected tree algorithm and distance threshold')}
243
+ aria-hidden={false}
244
+ >
245
+ <TroubleshootIcon
246
+ style={{
247
+ color: theme.palette.primary.main,
248
+ position: 'absolute',
249
+ width: 20,
250
+ height: 20,
251
+ marginLeft: theme.spacing(-0.5),
252
+ }}
253
+ fontSize={'small'}
254
+ />
255
+ </Tooltip>
256
+ );
257
+ }, [t, theme]);
258
+
259
+
260
+ const renderCell = useCallback(({ id, row }: TableRowParams<Case>) => {
261
+ const rowValue = CaseUtil.getRowValue(row.content, completeCaseType.cols[id], completeCaseType);
262
+
263
+ if (id === stratification?.col?.id) {
264
+ return (
265
+ <EpiLegendaItem
266
+ color={stratification?.caseIdColors[row.id]}
267
+ rowValue={rowValue}
268
+ />
269
+ );
270
+ }
271
+
272
+ return (
273
+ <>
274
+ {rowValue.short}
275
+ </>
276
+ );
277
+ }, [completeCaseType, stratification?.caseIdColors, stratification?.col?.id]);
278
+
279
+ const staticTableColumns = useMemo<TableColumn<Case>[]>(() => {
280
+ return [
281
+ TableUtil.createReadableIndexColumn({
282
+ getAriaLabel: (params: TableRowParams<Case>) => t('Show case information for {{index}}', { index: params.rowIndex + 1 }),
283
+ }),
284
+ TableUtil.createSelectableColumn(),
285
+ {
286
+ type: 'text',
287
+ renderCell: renderEventsCell,
288
+ isInitiallyVisible: true,
289
+ isStatic: true,
290
+ frozen: true,
291
+ resizable: false,
292
+ id: 'events',
293
+ renderHeader: renderEventsHeader,
294
+ widthPx: 24,
295
+ },
296
+ {
297
+ type: 'text',
298
+ renderCell: renderSimilarCell,
299
+ headerTooltipContent: t`Is similar case?`,
300
+ isInitiallyVisible: true,
301
+ isStatic: true,
302
+ frozen: true,
303
+ resizable: false,
304
+ id: 'similar',
305
+ renderHeader: renderSimilarHeader,
306
+ widthPx: 24,
307
+ },
308
+ ];
309
+ }, [renderEventsCell, renderSimilarCell, renderEventsHeader, renderSimilarHeader, t]);
310
+
311
+ const tableColumns = useMemo<TableColumn<Case>[]>(() => {
312
+ const { DATA_MISSING_CHARACTER } = ConfigManager.instance.config.epi;
313
+
314
+ const initialVisibleColumnIds = CaseTypeUtil.getInitialVisibleColIds(completeCaseType);
315
+ const caseTypeTableColumns: TableColumn<Case>[] = [];
316
+
317
+
318
+ completeCaseType.ordered_dim_ids.map(x => completeCaseType.dims[x]).forEach((dim) => {
319
+ completeCaseType.ordered_col_ids_by_dim[dim.id].map(id => completeCaseType.cols[id]).forEach(col => {
320
+ const refCol = completeCaseType.ref_cols[col.ref_col_id];
321
+ const baseCaseTypeTableColumn: Partial<TableColumn<Case>> = {
322
+ isInitiallyVisible: initialVisibleColumnIds.includes(col.id),
323
+ id: col.id,
324
+ headerTooltipContent: refCol.description,
325
+ headerName: col.label,
326
+ };
327
+ if (refCol.col_type === ColType.GENETIC_DISTANCE) {
328
+ caseTypeTableColumns.push({
329
+ ...baseCaseTypeTableColumn,
330
+ type: 'caseType',
331
+ widthPx: 200,
332
+ valueGetter: (params) => {
333
+ const value = treeAddresses[col.id]?.addresses[params.row.id] ? `${treeAddresses[col.id].algorithmCode} ${treeAddresses[col.id].addresses[params.row.id]}` : undefined;
334
+ return {
335
+ raw: value,
336
+ short: value ?? DATA_MISSING_CHARACTER,
337
+ full: value ?? DATA_MISSING_CHARACTER,
338
+ long: value ?? DATA_MISSING_CHARACTER,
339
+ isMissing: !value,
340
+ };
341
+ },
342
+ comparatorFactory: ({ direction }: GetTableCellRowComparatorProps<TableColumnCaseType<Case>>) => (a: Case, b: Case) => {
343
+ const sortValue = StringUtil.advancedSortComperator(treeAddresses[col.id]?.addresses?.[a.id], treeAddresses[col.id]?.addresses?.[b.id]);
344
+ return direction === 'asc' ? sortValue : -sortValue;
345
+ },
346
+ } as TableColumn<Case>);
347
+ } else {
348
+ let cellRenderer: (params: TableRowParams<Case>) => string | ReactElement;
349
+ if (refCol.col_type === ColType.ORGANIZATION) {
350
+ cellRenderer = renderOrganizationCell;
351
+ } else if (refCol.col_type === ColType.GENETIC_SEQUENCE) {
352
+ cellRenderer = renderGeneticSequenceCell;
353
+ } else {
354
+ cellRenderer = renderCell;
355
+ }
356
+
357
+ caseTypeTableColumns.push({
358
+ ...baseCaseTypeTableColumn,
359
+ widthPx: getColumnWidth(col, col.label),
360
+ type: 'caseType',
361
+ renderCell: cellRenderer,
362
+ col,
363
+ completeCaseType,
364
+ comparatorFactory: TableUtil.createCaseTypeCellRowComperator,
365
+ textAlign: ([ColType.DECIMAL_0, ColType.DECIMAL_1, ColType.DECIMAL_2, ColType.DECIMAL_3, ColType.DECIMAL_4, ColType.DECIMAL_4, ColType.DECIMAL_5, ColType.DECIMAL_6] as ColType[]).includes(refCol.col_type) ? 'right' : 'left',
366
+ } as TableColumn<Case>);
367
+ }
368
+ });
369
+ });
370
+
371
+ return [
372
+ ...staticTableColumns,
373
+ ...caseTypeTableColumns,
374
+ ];
375
+ }, [completeCaseType, staticTableColumns, treeAddresses, getColumnWidth, renderOrganizationCell, renderGeneticSequenceCell, renderCell]);
376
+
377
+ const onRowMouseEnter = useCallback((row: Case) => {
378
+ highlightingManager.highlight({
379
+ caseIds: [row.id],
380
+ origin: EPI_ZONE.LINE_LIST,
381
+ });
382
+ }, [highlightingManager]);
383
+
384
+ const onRowMouseLeave = useCallback(() => {
385
+ highlightingManager.highlight({
386
+ caseIds: [],
387
+ origin: EPI_ZONE.LINE_LIST,
388
+ });
389
+ }, [highlightingManager]);
390
+
391
+ useEffect(() => {
392
+ setTableColumns(tableColumns);
393
+ }, [setTableColumns, tableColumns]);
394
+
395
+ useEffect(() => {
396
+ const unsubscribe = highlightingManager.subscribe((highlighting) => {
397
+ if (highlighting?.origin === EPI_ZONE.LINE_LIST) {
398
+ return;
399
+ }
400
+ rowHighlightingSubject.next(highlighting.caseIds);
401
+ });
402
+ return () => {
403
+ unsubscribe();
404
+ };
405
+ }, [highlightingManager, rowHighlightingSubject]);
406
+
407
+ useEpiLineListEmitDownloadOptions();
408
+
409
+ const updateVisibleIndexDebounced = useDebouncedCallback((index: number) => {
410
+ updateEpiListWidgetData({
411
+ visibleItemItemIndex: index,
412
+ });
413
+ }, 500);
414
+
415
+ const onTableVisibleItemIndexChange = useCallback((index: number) => {
416
+ updateVisibleIndexDebounced(index);
417
+ }, [updateVisibleIndexDebounced]);
418
+
419
+ const onRangeChangedDebounced = useDebouncedCallback(async (range: ListRange) => {
420
+ await EpiLineListCaseSetMembersManager.instance.loadRange(sortedData.slice(range.startIndex, Math.min(range.endIndex + 1, sortedData.length)).map(row => row.id));
421
+ }, ConfigManager.instance.config.epiLineList.CASE_SET_MEMBERS_FETCH_DEBOUNCE_DELAY_MS, {
422
+ trailing: true,
423
+ leading: false,
424
+ });
425
+
426
+ useEffect(() => {
427
+ return () => {
428
+ EpiLineListCaseSetMembersManager.instance.cleanStaleQueue();
429
+ };
430
+ }, []);
431
+
432
+ const onVerticalScrollPositionChange = useCallback((position: number) => {
433
+ if (isNaN(position)) {
434
+ return;
435
+ }
436
+ linkedScrollSubject.next({
437
+ position,
438
+ origin: containerRef.current,
439
+ });
440
+ }, [linkedScrollSubject]);
441
+
442
+ useEffect(() => {
443
+ const unsubscribe = linkedScrollSubject.subscribe((data) => {
444
+ if (data.origin === containerRef.current) {
445
+ return;
446
+ }
447
+ tableRef.current.setVerticalScrollPosition(data.position);
448
+ });
449
+
450
+ return () => {
451
+ unsubscribe();
452
+ };
453
+ }, [linkedScrollSubject]);
454
+
455
+ const getRowName = useCallback((row: Case): string => {
456
+ return row.id;
457
+ }, []);
458
+
459
+ return (
460
+ <EpiWidget
461
+ isLoading={isDataLoading}
462
+ primaryMenu={<EpiLineListPrimaryMenu caseSet={caseSet} />}
463
+ secondaryMenu={<EpiLineListSecondaryMenu onLink={onLink} />}
464
+ title={<EpiLineListTitle />}
465
+ zone={EPI_ZONE.LINE_LIST}
466
+ >
467
+ <Box
468
+ ref={containerRef}
469
+ sx={{
470
+ width: '100%',
471
+ height: '100%',
472
+ }}
473
+ >
474
+ <Table
475
+ ref={tableRef}
476
+ forceHorizontalOverflow
477
+ font={theme['gen-epix'].lineList.font}
478
+ getRowName={getRowName}
479
+ initialVisibleItemIndex={epiDashboardStore.getState().epiListWidgetData.visibleItemItemIndex}
480
+ rowHeight={3}
481
+ rowHighlightingSubject={rowHighlightingSubject}
482
+ onRangeChanged={onRangeChangedDebounced}
483
+ onReadableIndexClick={onIndexCellClick}
484
+ onRowMouseEnter={onRowMouseEnter}
485
+ onRowMouseLeave={onRowMouseLeave}
486
+ onVerticalScrollPositionChange={onVerticalScrollPositionChange}
487
+ onVisibleItemIndexChange={onTableVisibleItemIndexChange}
488
+ />
489
+ </Box>
490
+ </EpiWidget>
491
+ );
492
+ };
@@ -0,0 +1,189 @@
1
+ import {
2
+ useCallback,
3
+ useContext,
4
+ useMemo,
5
+ } from 'react';
6
+ import { useTranslation } from 'react-i18next';
7
+ import { useStore } from 'zustand';
8
+ import { useShallow } from 'zustand/shallow';
9
+
10
+ import type {
11
+ Case,
12
+ CaseSet,
13
+ } from '../../../api';
14
+ import {
15
+ CommandName,
16
+ PermissionType,
17
+ } from '../../../api';
18
+ import { AuthorizationManager } from '../../../classes/managers/AuthorizationManager';
19
+ import { EpiEventBusManager } from '../../../classes/managers/EpiEventBusManager';
20
+ import type { MenuItemData } from '../../../models/nestedMenu';
21
+ import { EpiDashboardStoreContext } from '../../../stores/epiDashboardStore';
22
+ import { UseColumnsMenu } from '../../../hooks/useColumnsMenu';
23
+ import type { TableColumn } from '../../../models/table';
24
+ import { CaseUtil } from '../../../utils/CaseUtil';
25
+ import { EpiWidgetMenu } from '../EpiWidgetMenu';
26
+ import { SelectionFilter } from '../../../classes/filters/SelectionFilter';
27
+
28
+ export type EpiLineListPrimaryMenuProps = {
29
+ readonly caseSet?: CaseSet;
30
+ };
31
+
32
+
33
+ export const EpiLineListPrimaryMenu = ({
34
+ caseSet,
35
+ }: EpiLineListPrimaryMenuProps) => {
36
+ const epiDashboardStore = useContext(EpiDashboardStoreContext);
37
+ const { t } = useTranslation();
38
+ const selectedIds = useStore(epiDashboardStore, useShallow((state) => state.selectedIds));
39
+ const sortedData = useStore(epiDashboardStore, useShallow((state) => state.sortedData));
40
+ const completeCaseType = useStore(epiDashboardStore, useShallow((state) => state.completeCaseType));
41
+ const setFilterValue = useStore(epiDashboardStore, useShallow((state) => state.setFilterValue));
42
+ const filters = useStore(epiDashboardStore, useShallow((state) => state.filters));
43
+ const setSelectedIds = useStore(epiDashboardStore, useShallow((state) => state.setSelectedIds));
44
+ const findSimilarCasesResults = useStore(epiDashboardStore, useShallow((state) => state.findSimilarCasesResults));
45
+
46
+ const hasCellData = useCallback((row: Case, tableColumn: TableColumn<Case>, rowIndex: number) => {
47
+ if (tableColumn.type === 'caseType' && tableColumn.valueGetter) {
48
+ return !tableColumn.valueGetter({
49
+ row,
50
+ id: tableColumn.id,
51
+ rowIndex,
52
+ }).isMissing;
53
+ }
54
+ return !CaseUtil.getRowValue(row.content, completeCaseType.cols[tableColumn.id], completeCaseType).isMissing;
55
+ }, [completeCaseType]);
56
+
57
+ const createFilterFromSelectedRowCaseIds = useCallback(async () => {
58
+ await setFilterValue('selected', selectedIds);
59
+ setSelectedIds([]);
60
+ }, [setFilterValue, selectedIds, setSelectedIds]);
61
+
62
+ const hasSelectionFilter = filters.some((filter) => filter instanceof SelectionFilter && filter.filterValue.length > 0);
63
+ const columnsMenuItem = UseColumnsMenu({ hasCellData });
64
+
65
+ const similarCaseIds = useMemo(() => findSimilarCasesResults?.flatMap((result) => result.similarCaseIds) || [], [findSimilarCasesResults]);
66
+
67
+ const rowsWithoutSimilarCases = useMemo(() => {
68
+ if (!findSimilarCasesResults?.length) {
69
+ return sortedData;
70
+ }
71
+ return sortedData.filter((row) => !similarCaseIds.includes(row.id));
72
+ }, [findSimilarCasesResults, sortedData, similarCaseIds]);
73
+
74
+ const selectedRowsWithoutSimilarCases = useMemo(() => {
75
+ return rowsWithoutSimilarCases.filter((row) => selectedIds?.includes(row.id));
76
+ }, [rowsWithoutSimilarCases, selectedIds]);
77
+
78
+ const selectedRows = useMemo(() => {
79
+ return sortedData.filter((row) => selectedIds?.includes(row.id));
80
+ }, [sortedData, selectedIds]);
81
+
82
+ const menu = useMemo<MenuItemData[]>(() => {
83
+ const shouldShowCreateEventMenuItem = AuthorizationManager.instance.doesUserHavePermission([{ command_name: CommandName.CreateCaseSetCommand, permission_type: PermissionType.EXECUTE }]);
84
+ const shouldShowAddToEventMenuItem = AuthorizationManager.instance.doesUserHavePermission([{ command_name: CommandName.CaseSetMemberCrudCommand, permission_type: PermissionType.CREATE }]);
85
+ const shouldShowRemoveFromEventMenuItem = !!caseSet && AuthorizationManager.instance.doesUserHavePermission([{ command_name: CommandName.CaseSetMemberCrudCommand, permission_type: PermissionType.DELETE }]);
86
+ // FIXME
87
+ // const shouldShowBulkEditCaseMenuItem = true;
88
+
89
+ const actionsColumnMenuItem: MenuItemData = {
90
+ label: t`Actions`,
91
+ items: [
92
+ {
93
+ label: t`Create filter from selected cases`,
94
+ disabled: !selectedIds?.length || similarCaseIds.length > 0,
95
+ callback: createFilterFromSelectedRowCaseIds,
96
+ divider: true,
97
+ },
98
+ {
99
+ label: t`Find similar cases`,
100
+ disabled: hasSelectionFilter,
101
+ callback: () => EpiEventBusManager.instance.emit('openFindSimilarCasesDialog', {
102
+ selectedRows: sortedData,
103
+ allRows: sortedData,
104
+ completeCaseType,
105
+ }),
106
+ },
107
+ {
108
+ label: t`Find similar cases (based on selected cases)`,
109
+ disabled: !selectedIds?.length || hasSelectionFilter,
110
+ callback: () => EpiEventBusManager.instance.emit('openFindSimilarCasesDialog', {
111
+ selectedRows,
112
+ allRows: sortedData,
113
+ completeCaseType,
114
+ }),
115
+ },
116
+ {
117
+ label: t`Remove similar cases from results`,
118
+ disabled: !findSimilarCasesResults?.length,
119
+ callback: () => EpiEventBusManager.instance.emit('openRemoveFindSimilarCasesResultDialog', {
120
+ completeCaseType,
121
+ }),
122
+ },
123
+ ],
124
+ };
125
+
126
+ if (shouldShowCreateEventMenuItem) {
127
+ actionsColumnMenuItem.items.push(
128
+ {
129
+ label: t`Create new event with selected cases`,
130
+ disabled: !selectedIds?.length,
131
+ callback: () => EpiEventBusManager.instance.emit('openCreateEventDialog', {
132
+ rows: selectedRows,
133
+ completeCaseType,
134
+ }),
135
+ },
136
+ );
137
+ }
138
+
139
+ if (shouldShowAddToEventMenuItem) {
140
+ actionsColumnMenuItem.items.push(
141
+ {
142
+ disabled: !selectedIds?.length,
143
+ label: t`Add selected cases to an existing event`,
144
+ callback: () => EpiEventBusManager.instance.emit('openAddCasesToEventDialog', {
145
+ rows: selectedRows,
146
+ currentCaseSet: caseSet,
147
+ }),
148
+ },
149
+ );
150
+ }
151
+
152
+ if (shouldShowRemoveFromEventMenuItem) {
153
+ actionsColumnMenuItem.items.push(
154
+ {
155
+ disabled: !selectedRowsWithoutSimilarCases.length,
156
+ label: t`Remove selected cases from this event`,
157
+ callback: () => EpiEventBusManager.instance.emit('openRemoveCasesFromEventDialog', {
158
+ rows: selectedRowsWithoutSimilarCases,
159
+ caseSet,
160
+ }),
161
+ },
162
+ );
163
+ }
164
+ if (actionsColumnMenuItem.items.length > 3) {
165
+ actionsColumnMenuItem.items[3].divider = true;
166
+ }
167
+
168
+ // last(actionsColumnMenuItem.items).divider = true;
169
+ // if (shouldShowBulkEditCaseMenuItem) {
170
+ // actionsColumnMenuItem.items.push(
171
+ // {
172
+ // disabled: !selectedRowCaseIds?.length,
173
+ // label: t`Bulk edit selected cases`,
174
+ // callback: () => EpiEventBusManager.instance.emit('openBulkEditCaseDialog', { rows: selectedRows }),
175
+ // },
176
+ // );
177
+ // }
178
+
179
+ const menus: MenuItemData[] = [
180
+ columnsMenuItem,
181
+ actionsColumnMenuItem,
182
+ ];
183
+
184
+ return menus;
185
+ }, [caseSet, t, selectedIds?.length, hasSelectionFilter, similarCaseIds.length, createFilterFromSelectedRowCaseIds, findSimilarCasesResults?.length, columnsMenuItem, sortedData, completeCaseType, selectedRows, selectedRowsWithoutSimilarCases]);
186
+
187
+
188
+ return <EpiWidgetMenu menu={menu} />;
189
+ };