tomoto 0.2.3 → 0.3.0

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Files changed (347) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +6 -0
  3. data/README.md +8 -10
  4. data/ext/tomoto/extconf.rb +6 -2
  5. data/ext/tomoto/{ext.cpp → tomoto.cpp} +1 -1
  6. data/lib/tomoto/version.rb +1 -1
  7. data/lib/tomoto.rb +5 -1
  8. data/vendor/EigenRand/EigenRand/Core.h +10 -10
  9. data/vendor/EigenRand/EigenRand/Dists/Basic.h +208 -9
  10. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +52 -31
  11. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +9 -8
  12. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +28 -21
  13. data/vendor/EigenRand/EigenRand/EigenRand +11 -6
  14. data/vendor/EigenRand/EigenRand/Macro.h +13 -7
  15. data/vendor/EigenRand/EigenRand/MorePacketMath.h +348 -740
  16. data/vendor/EigenRand/EigenRand/MvDists/Multinomial.h +5 -3
  17. data/vendor/EigenRand/EigenRand/MvDists/MvNormal.h +9 -3
  18. data/vendor/EigenRand/EigenRand/PacketFilter.h +11 -253
  19. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +21 -47
  20. data/vendor/EigenRand/EigenRand/RandUtils.h +50 -344
  21. data/vendor/EigenRand/EigenRand/arch/AVX/MorePacketMath.h +619 -0
  22. data/vendor/EigenRand/EigenRand/arch/AVX/PacketFilter.h +149 -0
  23. data/vendor/EigenRand/EigenRand/arch/AVX/RandUtils.h +228 -0
  24. data/vendor/EigenRand/EigenRand/arch/NEON/MorePacketMath.h +473 -0
  25. data/vendor/EigenRand/EigenRand/arch/NEON/PacketFilter.h +142 -0
  26. data/vendor/EigenRand/EigenRand/arch/NEON/RandUtils.h +126 -0
  27. data/vendor/EigenRand/EigenRand/arch/SSE/MorePacketMath.h +501 -0
  28. data/vendor/EigenRand/EigenRand/arch/SSE/PacketFilter.h +133 -0
  29. data/vendor/EigenRand/EigenRand/arch/SSE/RandUtils.h +120 -0
  30. data/vendor/EigenRand/EigenRand/doc.h +24 -12
  31. data/vendor/EigenRand/README.md +57 -4
  32. data/vendor/eigen/COPYING.APACHE +203 -0
  33. data/vendor/eigen/COPYING.BSD +1 -1
  34. data/vendor/eigen/COPYING.MINPACK +51 -52
  35. data/vendor/eigen/Eigen/Cholesky +0 -1
  36. data/vendor/eigen/Eigen/Core +112 -265
  37. data/vendor/eigen/Eigen/Eigenvalues +2 -3
  38. data/vendor/eigen/Eigen/Geometry +5 -8
  39. data/vendor/eigen/Eigen/Householder +0 -1
  40. data/vendor/eigen/Eigen/Jacobi +0 -1
  41. data/vendor/eigen/Eigen/KLUSupport +41 -0
  42. data/vendor/eigen/Eigen/LU +2 -5
  43. data/vendor/eigen/Eigen/OrderingMethods +0 -3
  44. data/vendor/eigen/Eigen/PaStiXSupport +1 -0
  45. data/vendor/eigen/Eigen/PardisoSupport +0 -0
  46. data/vendor/eigen/Eigen/QR +2 -3
  47. data/vendor/eigen/Eigen/QtAlignedMalloc +0 -1
  48. data/vendor/eigen/Eigen/SVD +0 -1
  49. data/vendor/eigen/Eigen/Sparse +0 -2
  50. data/vendor/eigen/Eigen/SparseCholesky +0 -8
  51. data/vendor/eigen/Eigen/SparseLU +4 -0
  52. data/vendor/eigen/Eigen/SparseQR +0 -1
  53. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +42 -27
  54. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +39 -23
  55. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +90 -47
  56. data/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
  57. data/vendor/eigen/Eigen/src/Core/Array.h +99 -11
  58. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +3 -3
  59. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +21 -21
  60. data/vendor/eigen/Eigen/src/Core/Assign.h +1 -1
  61. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +125 -50
  62. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +10 -10
  63. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +16 -16
  64. data/vendor/eigen/Eigen/src/Core/Block.h +56 -60
  65. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +29 -31
  66. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +7 -3
  67. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +325 -272
  68. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +5 -0
  69. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +21 -22
  70. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +153 -18
  71. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +6 -6
  72. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +14 -10
  73. data/vendor/eigen/Eigen/src/Core/DenseBase.h +132 -42
  74. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +25 -21
  75. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +153 -71
  76. data/vendor/eigen/Eigen/src/Core/Diagonal.h +21 -23
  77. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +50 -2
  78. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +1 -1
  79. data/vendor/eigen/Eigen/src/Core/Dot.h +10 -10
  80. data/vendor/eigen/Eigen/src/Core/EigenBase.h +10 -9
  81. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +8 -4
  82. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +3 -3
  83. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +20 -10
  84. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +599 -152
  85. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +40 -33
  86. data/vendor/eigen/Eigen/src/Core/IO.h +40 -7
  87. data/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
  88. data/vendor/eigen/Eigen/src/Core/Inverse.h +9 -10
  89. data/vendor/eigen/Eigen/src/Core/Map.h +7 -7
  90. data/vendor/eigen/Eigen/src/Core/MapBase.h +10 -3
  91. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +767 -125
  92. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +118 -19
  93. data/vendor/eigen/Eigen/src/Core/Matrix.h +131 -25
  94. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +21 -3
  95. data/vendor/eigen/Eigen/src/Core/NestByValue.h +25 -50
  96. data/vendor/eigen/Eigen/src/Core/NoAlias.h +4 -3
  97. data/vendor/eigen/Eigen/src/Core/NumTraits.h +107 -20
  98. data/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  99. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +3 -31
  100. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +152 -59
  101. data/vendor/eigen/Eigen/src/Core/Product.h +30 -25
  102. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +192 -125
  103. data/vendor/eigen/Eigen/src/Core/Random.h +37 -1
  104. data/vendor/eigen/Eigen/src/Core/Redux.h +180 -170
  105. data/vendor/eigen/Eigen/src/Core/Ref.h +121 -23
  106. data/vendor/eigen/Eigen/src/Core/Replicate.h +8 -8
  107. data/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
  108. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +7 -5
  109. data/vendor/eigen/Eigen/src/Core/Reverse.h +18 -12
  110. data/vendor/eigen/Eigen/src/Core/Select.h +8 -6
  111. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +33 -20
  112. data/vendor/eigen/Eigen/src/Core/Solve.h +14 -14
  113. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +16 -16
  114. data/vendor/eigen/Eigen/src/Core/SolverBase.h +41 -3
  115. data/vendor/eigen/Eigen/src/Core/StableNorm.h +100 -70
  116. data/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
  117. data/vendor/eigen/Eigen/src/Core/Stride.h +9 -4
  118. data/vendor/eigen/Eigen/src/Core/Swap.h +5 -4
  119. data/vendor/eigen/Eigen/src/Core/Transpose.h +88 -27
  120. data/vendor/eigen/Eigen/src/Core/Transpositions.h +26 -47
  121. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +93 -75
  122. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +5 -5
  123. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +159 -70
  124. data/vendor/eigen/Eigen/src/Core/Visitor.h +137 -29
  125. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +50 -129
  126. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +126 -337
  127. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1092 -155
  128. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +65 -1
  129. data/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  130. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +207 -236
  131. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1482 -495
  132. data/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +152 -165
  134. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +19 -251
  135. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2042 -392
  139. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +235 -80
  140. data/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +102 -14
  142. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +1 -1
  146. data/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/{CUDA → GPU}/MathFunctions.h +16 -4
  148. data/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +313 -219
  155. data/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +54 -70
  157. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4376 -549
  158. data/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +59 -179
  160. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +65 -428
  161. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +893 -283
  162. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +65 -0
  163. data/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  164. data/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  165. data/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  166. data/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  167. data/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  168. data/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  169. data/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  170. data/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  171. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +212 -183
  172. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +101 -5
  173. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +510 -395
  174. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +11 -2
  175. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +112 -46
  176. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +31 -30
  177. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +32 -2
  178. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +355 -16
  179. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1075 -586
  180. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +49 -24
  181. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +41 -35
  182. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +6 -6
  183. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +4 -2
  184. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +382 -483
  185. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +22 -5
  186. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +53 -30
  187. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +16 -8
  188. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +8 -6
  189. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +4 -4
  190. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +5 -4
  191. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +33 -27
  192. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +14 -12
  193. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +36 -34
  194. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +8 -4
  195. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +13 -10
  196. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +304 -119
  197. data/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  198. data/vendor/eigen/Eigen/src/Core/util/Constants.h +25 -9
  199. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +26 -3
  200. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +29 -9
  201. data/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  202. data/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
  203. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +8 -1
  204. data/vendor/eigen/Eigen/src/Core/util/Macros.h +709 -246
  205. data/vendor/eigen/Eigen/src/Core/util/Memory.h +222 -52
  206. data/vendor/eigen/Eigen/src/Core/util/Meta.h +355 -77
  207. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +5 -1
  208. data/vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  209. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +8 -5
  210. data/vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  211. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +65 -30
  212. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +1 -1
  213. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +7 -4
  214. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +2 -2
  215. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +1 -1
  216. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +2 -2
  217. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +2 -2
  218. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +9 -6
  219. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +21 -9
  220. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +77 -43
  221. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +20 -15
  222. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +99 -5
  223. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +4 -4
  224. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +3 -3
  225. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +15 -11
  226. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +1 -1
  227. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +3 -2
  228. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +39 -2
  229. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +70 -14
  230. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +3 -3
  231. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +23 -5
  232. data/vendor/eigen/Eigen/src/Geometry/Transform.h +88 -67
  233. data/vendor/eigen/Eigen/src/Geometry/Translation.h +6 -12
  234. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +1 -1
  235. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  236. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +9 -2
  237. data/vendor/eigen/Eigen/src/Householder/Householder.h +8 -4
  238. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +123 -48
  239. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +15 -15
  240. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +7 -23
  241. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +5 -22
  242. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +41 -47
  243. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +51 -60
  244. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +70 -20
  245. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +2 -20
  246. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +11 -9
  247. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +31 -10
  248. data/vendor/eigen/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  249. data/vendor/eigen/Eigen/src/LU/Determinant.h +35 -19
  250. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +29 -43
  251. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +25 -8
  252. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +71 -58
  253. data/vendor/eigen/Eigen/src/LU/arch/InverseSize4.h +351 -0
  254. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +7 -17
  255. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +297 -277
  256. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +6 -10
  257. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +1 -1
  258. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +9 -7
  259. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +41 -20
  260. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +100 -27
  261. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +59 -22
  262. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +48 -23
  263. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +25 -3
  264. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +183 -63
  265. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +22 -14
  266. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +83 -22
  267. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +3 -3
  268. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +17 -9
  269. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +12 -37
  270. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +3 -2
  271. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +16 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +6 -6
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +81 -27
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +25 -57
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +40 -11
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +11 -15
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +4 -2
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +30 -8
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +126 -11
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +5 -12
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +13 -1
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +7 -7
  283. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +5 -2
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +8 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +1 -1
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +1 -0
  287. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +162 -12
  288. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +1 -1
  289. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +76 -2
  290. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +2 -2
  291. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +1 -1
  292. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +1 -1
  293. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +19 -6
  294. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +2 -12
  295. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +2 -2
  296. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +2 -2
  297. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +6 -8
  298. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +175 -39
  299. data/vendor/eigen/Eigen/src/misc/lapacke.h +5 -4
  300. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +28 -2
  301. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +155 -11
  302. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +626 -242
  303. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +14 -0
  304. data/vendor/eigen/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  305. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +4 -4
  306. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +10 -0
  307. data/vendor/eigen/Eigen/src/plugins/ReshapedMethods.h +149 -0
  308. data/vendor/eigen/README.md +2 -0
  309. data/vendor/eigen/bench/btl/README +1 -1
  310. data/vendor/eigen/bench/tensors/README +6 -7
  311. data/vendor/eigen/ci/README.md +56 -0
  312. data/vendor/eigen/demos/mix_eigen_and_c/README +1 -1
  313. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +213 -158
  314. data/vendor/eigen/unsupported/README.txt +1 -1
  315. data/vendor/tomotopy/README.kr.rst +21 -0
  316. data/vendor/tomotopy/README.rst +20 -0
  317. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +2 -2
  318. data/vendor/tomotopy/src/Labeling/Phraser.hpp +1 -1
  319. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +2 -1
  320. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +2 -1
  321. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +1 -1
  322. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +2 -2
  323. data/vendor/tomotopy/src/TopicModel/HDP.h +1 -0
  324. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +53 -2
  325. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +1 -1
  326. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +1 -0
  327. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +2 -2
  328. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +16 -5
  329. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +1 -0
  330. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +1 -0
  331. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +1 -0
  332. data/vendor/tomotopy/src/TopicModel/PT.h +3 -1
  333. data/vendor/tomotopy/src/TopicModel/PTModel.hpp +31 -1
  334. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +2 -2
  335. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +7 -5
  336. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +36 -1
  337. data/vendor/tomotopy/src/Utils/exception.h +6 -0
  338. data/vendor/tomotopy/src/Utils/sample.hpp +14 -12
  339. data/vendor/tomotopy/src/Utils/sse_gamma.h +0 -3
  340. metadata +60 -14
  341. data/vendor/eigen/Eigen/CMakeLists.txt +0 -19
  342. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +0 -674
  343. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +0 -333
  344. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +0 -1124
  345. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +0 -212
  346. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +0 -161
  347. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +0 -338
@@ -0,0 +1,221 @@
1
+ //#define EIGEN_POWER_USE_PREFETCH // Use prefetching in gemm routines
2
+ #ifdef EIGEN_POWER_USE_PREFETCH
3
+ #define EIGEN_POWER_PREFETCH(p) prefetch(p)
4
+ #else
5
+ #define EIGEN_POWER_PREFETCH(p)
6
+ #endif
7
+
8
+ namespace Eigen {
9
+
10
+ namespace internal {
11
+
12
+ template<typename Scalar, typename Packet, typename DataMapper, typename Index, const Index accRows>
13
+ EIGEN_STRONG_INLINE void gemm_extra_col(
14
+ const DataMapper& res,
15
+ const Scalar* lhs_base,
16
+ const Scalar* rhs_base,
17
+ Index depth,
18
+ Index strideA,
19
+ Index offsetA,
20
+ Index row,
21
+ Index col,
22
+ Index remaining_rows,
23
+ Index remaining_cols,
24
+ const Packet& pAlpha);
25
+
26
+ template<typename Scalar, typename Packet, typename DataMapper, typename Index, const Index accRows, const Index accCols>
27
+ EIGEN_STRONG_INLINE void gemm_extra_row(
28
+ const DataMapper& res,
29
+ const Scalar* lhs_base,
30
+ const Scalar* rhs_base,
31
+ Index depth,
32
+ Index strideA,
33
+ Index offsetA,
34
+ Index row,
35
+ Index col,
36
+ Index rows,
37
+ Index cols,
38
+ Index remaining_rows,
39
+ const Packet& pAlpha,
40
+ const Packet& pMask);
41
+
42
+ template<typename Scalar, typename Packet, typename DataMapper, typename Index, const Index accCols>
43
+ EIGEN_STRONG_INLINE void gemm_unrolled_col(
44
+ const DataMapper& res,
45
+ const Scalar* lhs_base,
46
+ const Scalar* rhs_base,
47
+ Index depth,
48
+ Index strideA,
49
+ Index offsetA,
50
+ Index& row,
51
+ Index rows,
52
+ Index col,
53
+ Index remaining_cols,
54
+ const Packet& pAlpha);
55
+
56
+ template<typename Packet>
57
+ EIGEN_ALWAYS_INLINE Packet bmask(const int remaining_rows);
58
+
59
+ template<typename Scalar, typename Packet, typename Packetc, typename DataMapper, typename Index, const Index accRows, const Index accCols, bool ConjugateLhs, bool ConjugateRhs, bool LhsIsReal, bool RhsIsReal>
60
+ EIGEN_STRONG_INLINE void gemm_complex_extra_col(
61
+ const DataMapper& res,
62
+ const Scalar* lhs_base,
63
+ const Scalar* rhs_base,
64
+ Index depth,
65
+ Index strideA,
66
+ Index offsetA,
67
+ Index strideB,
68
+ Index row,
69
+ Index col,
70
+ Index remaining_rows,
71
+ Index remaining_cols,
72
+ const Packet& pAlphaReal,
73
+ const Packet& pAlphaImag);
74
+
75
+ template<typename Scalar, typename Packet, typename Packetc, typename DataMapper, typename Index, const Index accRows, const Index accCols, bool ConjugateLhs, bool ConjugateRhs, bool LhsIsReal, bool RhsIsReal>
76
+ EIGEN_STRONG_INLINE void gemm_complex_extra_row(
77
+ const DataMapper& res,
78
+ const Scalar* lhs_base,
79
+ const Scalar* rhs_base,
80
+ Index depth,
81
+ Index strideA,
82
+ Index offsetA,
83
+ Index strideB,
84
+ Index row,
85
+ Index col,
86
+ Index rows,
87
+ Index cols,
88
+ Index remaining_rows,
89
+ const Packet& pAlphaReal,
90
+ const Packet& pAlphaImag,
91
+ const Packet& pMask);
92
+
93
+ template<typename Scalar, typename Packet, typename Packetc, typename DataMapper, typename Index, const Index accCols, bool ConjugateLhs, bool ConjugateRhs, bool LhsIsReal, bool RhsIsReal>
94
+ EIGEN_STRONG_INLINE void gemm_complex_unrolled_col(
95
+ const DataMapper& res,
96
+ const Scalar* lhs_base,
97
+ const Scalar* rhs_base,
98
+ Index depth,
99
+ Index strideA,
100
+ Index offsetA,
101
+ Index strideB,
102
+ Index& row,
103
+ Index rows,
104
+ Index col,
105
+ Index remaining_cols,
106
+ const Packet& pAlphaReal,
107
+ const Packet& pAlphaImag);
108
+
109
+ template<typename Scalar, typename Packet>
110
+ EIGEN_ALWAYS_INLINE Packet ploadLhs(const Scalar* lhs);
111
+
112
+ template<typename DataMapper, typename Packet, typename Index, const Index accCols, int N, int StorageOrder>
113
+ EIGEN_ALWAYS_INLINE void bload(PacketBlock<Packet,4>& acc, const DataMapper& res, Index row, Index col);
114
+
115
+ template<typename DataMapper, typename Packet, typename Index, const Index accCols, int N, int StorageOrder>
116
+ EIGEN_ALWAYS_INLINE void bload(PacketBlock<Packet,8>& acc, const DataMapper& res, Index row, Index col);
117
+
118
+ template<typename Packet>
119
+ EIGEN_ALWAYS_INLINE void bscale(PacketBlock<Packet,4>& acc, PacketBlock<Packet,4>& accZ, const Packet& pAlpha);
120
+
121
+ template<typename Packet, int N>
122
+ EIGEN_ALWAYS_INLINE void bscalec(PacketBlock<Packet,N>& aReal, PacketBlock<Packet,N>& aImag, const Packet& bReal, const Packet& bImag, PacketBlock<Packet,N>& cReal, PacketBlock<Packet,N>& cImag);
123
+
124
+ const static Packet16uc p16uc_SETCOMPLEX32_FIRST = { 0, 1, 2, 3,
125
+ 16, 17, 18, 19,
126
+ 4, 5, 6, 7,
127
+ 20, 21, 22, 23};
128
+
129
+ const static Packet16uc p16uc_SETCOMPLEX32_SECOND = { 8, 9, 10, 11,
130
+ 24, 25, 26, 27,
131
+ 12, 13, 14, 15,
132
+ 28, 29, 30, 31};
133
+ //[a,b],[ai,bi] = [a,ai] - This is equivalent to p16uc_GETREAL64
134
+ const static Packet16uc p16uc_SETCOMPLEX64_FIRST = { 0, 1, 2, 3, 4, 5, 6, 7,
135
+ 16, 17, 18, 19, 20, 21, 22, 23};
136
+
137
+ //[a,b],[ai,bi] = [b,bi] - This is equivalent to p16uc_GETIMAG64
138
+ const static Packet16uc p16uc_SETCOMPLEX64_SECOND = { 8, 9, 10, 11, 12, 13, 14, 15,
139
+ 24, 25, 26, 27, 28, 29, 30, 31};
140
+
141
+
142
+ // Grab two decouples real/imaginary PacketBlocks and return two coupled (real/imaginary pairs) PacketBlocks.
143
+ template<typename Packet, typename Packetc>
144
+ EIGEN_ALWAYS_INLINE void bcouple_common(PacketBlock<Packet,4>& taccReal, PacketBlock<Packet,4>& taccImag, PacketBlock<Packetc, 4>& acc1, PacketBlock<Packetc, 4>& acc2)
145
+ {
146
+ acc1.packet[0].v = vec_perm(taccReal.packet[0], taccImag.packet[0], p16uc_SETCOMPLEX32_FIRST);
147
+ acc1.packet[1].v = vec_perm(taccReal.packet[1], taccImag.packet[1], p16uc_SETCOMPLEX32_FIRST);
148
+ acc1.packet[2].v = vec_perm(taccReal.packet[2], taccImag.packet[2], p16uc_SETCOMPLEX32_FIRST);
149
+ acc1.packet[3].v = vec_perm(taccReal.packet[3], taccImag.packet[3], p16uc_SETCOMPLEX32_FIRST);
150
+
151
+ acc2.packet[0].v = vec_perm(taccReal.packet[0], taccImag.packet[0], p16uc_SETCOMPLEX32_SECOND);
152
+ acc2.packet[1].v = vec_perm(taccReal.packet[1], taccImag.packet[1], p16uc_SETCOMPLEX32_SECOND);
153
+ acc2.packet[2].v = vec_perm(taccReal.packet[2], taccImag.packet[2], p16uc_SETCOMPLEX32_SECOND);
154
+ acc2.packet[3].v = vec_perm(taccReal.packet[3], taccImag.packet[3], p16uc_SETCOMPLEX32_SECOND);
155
+ }
156
+
157
+ template<typename Packet, typename Packetc>
158
+ EIGEN_ALWAYS_INLINE void bcouple(PacketBlock<Packet,4>& taccReal, PacketBlock<Packet,4>& taccImag, PacketBlock<Packetc,8>& tRes, PacketBlock<Packetc, 4>& acc1, PacketBlock<Packetc, 4>& acc2)
159
+ {
160
+ bcouple_common<Packet, Packetc>(taccReal, taccImag, acc1, acc2);
161
+
162
+ acc1.packet[0] = padd<Packetc>(tRes.packet[0], acc1.packet[0]);
163
+ acc1.packet[1] = padd<Packetc>(tRes.packet[1], acc1.packet[1]);
164
+ acc1.packet[2] = padd<Packetc>(tRes.packet[2], acc1.packet[2]);
165
+ acc1.packet[3] = padd<Packetc>(tRes.packet[3], acc1.packet[3]);
166
+
167
+ acc2.packet[0] = padd<Packetc>(tRes.packet[4], acc2.packet[0]);
168
+ acc2.packet[1] = padd<Packetc>(tRes.packet[5], acc2.packet[1]);
169
+ acc2.packet[2] = padd<Packetc>(tRes.packet[6], acc2.packet[2]);
170
+ acc2.packet[3] = padd<Packetc>(tRes.packet[7], acc2.packet[3]);
171
+ }
172
+
173
+ template<typename Packet, typename Packetc>
174
+ EIGEN_ALWAYS_INLINE void bcouple_common(PacketBlock<Packet,1>& taccReal, PacketBlock<Packet,1>& taccImag, PacketBlock<Packetc, 1>& acc1, PacketBlock<Packetc, 1>& acc2)
175
+ {
176
+ acc1.packet[0].v = vec_perm(taccReal.packet[0], taccImag.packet[0], p16uc_SETCOMPLEX32_FIRST);
177
+
178
+ acc2.packet[0].v = vec_perm(taccReal.packet[0], taccImag.packet[0], p16uc_SETCOMPLEX32_SECOND);
179
+ }
180
+
181
+ template<typename Packet, typename Packetc>
182
+ EIGEN_ALWAYS_INLINE void bcouple(PacketBlock<Packet,1>& taccReal, PacketBlock<Packet,1>& taccImag, PacketBlock<Packetc,2>& tRes, PacketBlock<Packetc, 1>& acc1, PacketBlock<Packetc, 1>& acc2)
183
+ {
184
+ bcouple_common<Packet, Packetc>(taccReal, taccImag, acc1, acc2);
185
+
186
+ acc1.packet[0] = padd<Packetc>(tRes.packet[0], acc1.packet[0]);
187
+
188
+ acc2.packet[0] = padd<Packetc>(tRes.packet[1], acc2.packet[0]);
189
+ }
190
+
191
+ template<>
192
+ EIGEN_ALWAYS_INLINE void bcouple_common<Packet2d, Packet1cd>(PacketBlock<Packet2d,4>& taccReal, PacketBlock<Packet2d,4>& taccImag, PacketBlock<Packet1cd, 4>& acc1, PacketBlock<Packet1cd, 4>& acc2)
193
+ {
194
+ acc1.packet[0].v = vec_perm(taccReal.packet[0], taccImag.packet[0], p16uc_SETCOMPLEX64_FIRST);
195
+ acc1.packet[1].v = vec_perm(taccReal.packet[1], taccImag.packet[1], p16uc_SETCOMPLEX64_FIRST);
196
+ acc1.packet[2].v = vec_perm(taccReal.packet[2], taccImag.packet[2], p16uc_SETCOMPLEX64_FIRST);
197
+ acc1.packet[3].v = vec_perm(taccReal.packet[3], taccImag.packet[3], p16uc_SETCOMPLEX64_FIRST);
198
+
199
+ acc2.packet[0].v = vec_perm(taccReal.packet[0], taccImag.packet[0], p16uc_SETCOMPLEX64_SECOND);
200
+ acc2.packet[1].v = vec_perm(taccReal.packet[1], taccImag.packet[1], p16uc_SETCOMPLEX64_SECOND);
201
+ acc2.packet[2].v = vec_perm(taccReal.packet[2], taccImag.packet[2], p16uc_SETCOMPLEX64_SECOND);
202
+ acc2.packet[3].v = vec_perm(taccReal.packet[3], taccImag.packet[3], p16uc_SETCOMPLEX64_SECOND);
203
+ }
204
+
205
+ template<>
206
+ EIGEN_ALWAYS_INLINE void bcouple_common<Packet2d, Packet1cd>(PacketBlock<Packet2d,1>& taccReal, PacketBlock<Packet2d,1>& taccImag, PacketBlock<Packet1cd, 1>& acc1, PacketBlock<Packet1cd, 1>& acc2)
207
+ {
208
+ acc1.packet[0].v = vec_perm(taccReal.packet[0], taccImag.packet[0], p16uc_SETCOMPLEX64_FIRST);
209
+
210
+ acc2.packet[0].v = vec_perm(taccReal.packet[0], taccImag.packet[0], p16uc_SETCOMPLEX64_SECOND);
211
+ }
212
+
213
+ // This is necessary because ploadRhs for double returns a pair of vectors when MMA is enabled.
214
+ template<typename Scalar, typename Packet>
215
+ EIGEN_ALWAYS_INLINE Packet ploadRhs(const Scalar* rhs)
216
+ {
217
+ return ploadu<Packet>(rhs);
218
+ }
219
+
220
+ } // end namespace internal
221
+ } // end namespace Eigen