svmkit 0.7.3 → 0.8.1

checksums.yaml

@@ -1,7 +1,7 @@
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data/.gitignore

@@ -1,6 +1,5 @@
 /.bundle/
 /.yardoc
-/Gemfile.lock
 /_yardoc/
 /coverage/
 /doc/
@@ -10,11 +9,3 @@
 
 # rspec failure tracking
 .rspec_status
-
-*.swp
-.DS_Store
-.ruby-version
-/spec/dump_dbl.t
-/spec/dump_int.t
-/spec/dump_mult_dbl.t
-/spec/dump_zb.t

data/.rspec

@@ -1,2 +1,3 @@
 --format documentation
 --color
+--require spec_helper

data/.travis.yml

@@ -1,15 +1,7 @@
+---
 sudo: false
-os: linux
-dist: trusty
 language: ruby
+cache: bundler
 rvm:
-  - 2.1
-  - 2.2
-  - 2.3
-  - 2.4
-  - 2.5
-  - 2.6
-before_install:
-  - travis_retry gem update --system || travis_retry gem update --system 2.7.8
-  - travis_retry gem install bundler --no-document || travis_retry gem install bundler --no-document -v 1.17.3
-
+  - 2.3.8
+before_install: gem install bundler -v 2.0.1

data/LICENSE.txt

@@ -1,4 +1,4 @@
-Copyright (c) 2017 yoshoku
+Copyright (c) 2017-2019 Atsushi Tatsuma
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without

data/README.md

@@ -1,17 +1,22 @@
 # SVMKit
 
-[![Build Status](https://travis-ci.org/yoshoku/SVMKit.svg?branch=master)](https://travis-ci.org/yoshoku/SVMKit)
-[![Coverage Status](https://coveralls.io/repos/github/yoshoku/SVMKit/badge.svg?branch=master)](https://coveralls.io/github/yoshoku/SVMKit?branch=master)
+[![Build Status](https://travis-ci.org/yoshoku/svmkit.svg?branch=master)](https://travis-ci.org/yoshoku/svmkit)
+[![Coverage Status](https://coveralls.io/repos/github/yoshoku/svmkit/badge.svg?branch=master)](https://coveralls.io/github/yoshoku/svmkit?branch=master)
 [![Gem Version](https://badge.fury.io/rb/svmkit.svg)](https://badge.fury.io/rb/svmkit)
-[![BSD 2-Clause License](https://img.shields.io/badge/License-BSD%202--Clause-orange.svg)](https://github.com/yoshoku/SVMKit/blob/master/LICENSE.txt)
+[![BSD 2-Clause License](https://img.shields.io/badge/License-BSD%202--Clause-orange.svg)](https://github.com/yoshoku/svmkit/blob/master/LICENSE.txt)
+[![Documentation](http://img.shields.io/badge/docs-rdoc.info-blue.svg)](https://www.rubydoc.info/gems/svmkit/)
+
+SVMKit has been deprecated and has been renamed to [Rumale](https://github.com/yoshoku/rumale).
+Initially, I started developing SVMKit as an experimental library aiming at implementing SVM in Ruby.
+However, since I added many other machine learning algorithms to SVMKit, I decided to change the library name.
+SVMKit will continue releasing for bugfix but will not add new features.
 
 SVMKit is a machine learninig library in Ruby.
 SVMKit provides machine learning algorithms with interfaces similar to Scikit-Learn in Python.
-SVMKit currently supports Linear / Kernel Support Vector Machine,
+SVMKit supports Linear / Kernel Support Vector Machine,
 Logistic Regression, Linear Regression, Ridge, Lasso, Factorization Machine,
 Naive Bayes, Decision Tree, AdaBoost, Random Forest, K-nearest neighbor classifier,
-K-Means, DBSCAN, Principal Component Analysis, Non-negative Matrix Factorization
-and cross-validation.
+K-Means, DBSCAN, Principal Component Analysis, and Non-negative Matrix Factorization.
 
 ## Installation
 
@@ -49,10 +54,6 @@ require 'svmkit'
 # Load the training dataset.
 samples, labels = SVMKit::Dataset.load_libsvm_file('pendigits')
 
-# If the features consists only of integers, load_libsvm_file method reads in Numo::Int32 format.
-# As necessary, you should convert sample array to Numo::DFloat format.
-samples = Numo::DFloat.cast(samples)
-
 # Map training data to RBF kernel feature space.
 transformer = SVMKit::KernelApproximation::RBF.new(gamma: 0.0001, n_components: 1024, random_seed: 1)
 transformed = transformer.fit_transform(samples)
@@ -73,7 +74,6 @@ require 'svmkit'
 
 # Load the testing dataset.
 samples, labels = SVMKit::Dataset.load_libsvm_file('pendigits.t')
-samples = Numo::DFloat.cast(samples)
 
 # Load the model.
 transformer = Marshal.load(File.binread('transformer.dat'))
@@ -106,7 +106,6 @@ require 'svmkit'
 
 # Load dataset.
 samples, labels = SVMKit::Dataset.load_libsvm_file('pendigits')
-samples = Numo::DFloat.cast(samples)
 
 # Define the estimator to be evaluated.
 lr = SVMKit::LinearModel::LogisticRegression.new(reg_param: 0.0001, random_seed: 1)
@@ -131,7 +130,6 @@ require 'svmkit'
 
 # Load dataset.
 samples, labels = SVMKit::Dataset.load_libsvm_file('pendigits')
-samples = Numo::DFloat.cast(samples)
 
 # Construct pipeline with kernel approximation and SVC.
 rbf = SVMKit::KernelApproximation::RBF.new(gamma: 0.0001, n_components: 800, random_seed: 1)

data/lib/svmkit.rb

@@ -1,68 +1,5 @@
-# frozen_string_literal: true
+warn 'SVMKit has been deprecated; You should migrate to Rumale.'
 
-require 'numo/narray'
+require 'rumale'
 
-require 'svmkit/version'
-require 'svmkit/validation'
-require 'svmkit/values'
-require 'svmkit/utils'
-require 'svmkit/pairwise_metric'
-require 'svmkit/dataset'
-require 'svmkit/probabilistic_output'
-require 'svmkit/base/base_estimator'
-require 'svmkit/base/classifier'
-require 'svmkit/base/regressor'
-require 'svmkit/base/cluster_analyzer'
-require 'svmkit/base/transformer'
-require 'svmkit/base/splitter'
-require 'svmkit/base/evaluator'
-require 'svmkit/optimizer/sgd'
-require 'svmkit/optimizer/rmsprop'
-require 'svmkit/optimizer/nadam'
-require 'svmkit/optimizer/yellow_fin'
-require 'svmkit/pipeline/pipeline'
-require 'svmkit/kernel_approximation/rbf'
-require 'svmkit/linear_model/sgd_linear_estimator'
-require 'svmkit/linear_model/svc'
-require 'svmkit/linear_model/svr'
-require 'svmkit/linear_model/logistic_regression'
-require 'svmkit/linear_model/linear_regression'
-require 'svmkit/linear_model/ridge'
-require 'svmkit/linear_model/lasso'
-require 'svmkit/kernel_machine/kernel_svc'
-require 'svmkit/polynomial_model/factorization_machine_classifier'
-require 'svmkit/polynomial_model/factorization_machine_regressor'
-require 'svmkit/multiclass/one_vs_rest_classifier'
-require 'svmkit/nearest_neighbors/k_neighbors_classifier'
-require 'svmkit/nearest_neighbors/k_neighbors_regressor'
-require 'svmkit/naive_bayes/naive_bayes'
-require 'svmkit/tree/node'
-require 'svmkit/tree/decision_tree_classifier'
-require 'svmkit/tree/decision_tree_regressor'
-require 'svmkit/ensemble/ada_boost_classifier'
-require 'svmkit/ensemble/ada_boost_regressor'
-require 'svmkit/ensemble/random_forest_classifier'
-require 'svmkit/ensemble/random_forest_regressor'
-require 'svmkit/clustering/k_means'
-require 'svmkit/clustering/dbscan'
-require 'svmkit/decomposition/pca'
-require 'svmkit/decomposition/nmf'
-require 'svmkit/preprocessing/l2_normalizer'
-require 'svmkit/preprocessing/min_max_scaler'
-require 'svmkit/preprocessing/standard_scaler'
-require 'svmkit/preprocessing/label_encoder'
-require 'svmkit/preprocessing/one_hot_encoder'
-require 'svmkit/model_selection/k_fold'
-require 'svmkit/model_selection/stratified_k_fold'
-require 'svmkit/model_selection/cross_validation'
-require 'svmkit/model_selection/grid_search_cv'
-require 'svmkit/evaluation_measure/accuracy'
-require 'svmkit/evaluation_measure/precision'
-require 'svmkit/evaluation_measure/recall'
-require 'svmkit/evaluation_measure/f_score'
-require 'svmkit/evaluation_measure/log_loss'
-require 'svmkit/evaluation_measure/r2_score'
-require 'svmkit/evaluation_measure/mean_squared_error'
-require 'svmkit/evaluation_measure/mean_absolute_error'
-require 'svmkit/evaluation_measure/purity'
-require 'svmkit/evaluation_measure/normalized_mutual_information'
+SVMKit = Rumale

data/svmkit.gemspec

@@ -1,10 +1,9 @@
 lib = File.expand_path('lib', __dir__)
 $LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
-require 'svmkit/version'
 
 Gem::Specification.new do |spec|
   spec.name          = 'svmkit'
-  spec.version       = SVMKit::VERSION
+  spec.version       = '0.8.1'
   spec.authors       = ['yoshoku']
   spec.email         = ['yoshoku@outlook.com']
 
@@ -15,11 +14,17 @@ MSG
   spec.description   = <<MSG
 SVMKit is a machine learninig library in Ruby.
 SVMKit provides machine learning algorithms with interfaces similar to Scikit-Learn in Python.
-SVMKit currently supports Linear / Kernel Support Vector Machine,
+SVMKit supports Linear / Kernel Support Vector Machine,
 Logistic Regression, Linear Regression, Ridge, Lasso, Factorization Machine,
 Naive Bayes, Decision Tree, AdaBoost, Random Forest, K-nearest neighbor algorithm,
-K-Means, DBSCAN, Principal Component Analysis, Non-negative Matrix Factorization
-and cross-validation.
+K-Means, DBSCAN, Principal Component Analysis, and Non-negative Matrix Factorization.
+Note that the SVMKit has been deprecated and has been renamed to Rumale.
+MSG
+  spec.post_install_message = <<MSG
+-------------------------------------------------------------------------
+Note that the SVMKit has been deprecated and has been renamed to Rumale.
+Please see https://rubygems.org/gems/rumale
+-------------------------------------------------------------------------
 MSG
   spec.homepage      = 'https://github.com/yoshoku/svmkit'
   spec.license       = 'BSD-2-Clause'
@@ -31,9 +36,9 @@ MSG
   spec.executables   = spec.files.grep(%r{^exe/}) { |f| File.basename(f) }
   spec.require_paths = ['lib']
 
-  spec.required_ruby_version = '>= 2.1'
+  spec.required_ruby_version = '>= 2.3'
 
-  spec.add_runtime_dependency 'numo-narray', '>= 0.9.1'
+  spec.add_runtime_dependency 'rumale', '~> 0.8'
 
   spec.add_development_dependency 'bundler', '>= 1.16'
   spec.add_development_dependency 'coveralls', '~> 0.8'

metadata

@@ -1,29 +1,29 @@
 --- !ruby/object:Gem::Specification
 name: svmkit
 version: !ruby/object:Gem::Version
-  version: 0.7.3
+  version: 0.8.1
 platform: ruby
 authors:
 - yoshoku
 autorequire: 
 bindir: exe
 cert_chain: []
-date: 2019-02-05 00:00:00.000000000 Z
+date: 2019-03-01 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
-  name: numo-narray
+  name: rumale
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: 0.9.1
+        version: '0.8'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: 0.9.1
+        version: '0.8'
 - !ruby/object:Gem::Dependency
   name: bundler
   requirement: !ruby/object:Gem::Requirement
@@ -83,103 +83,38 @@ dependencies:
 description: |
   SVMKit is a machine learninig library in Ruby.
   SVMKit provides machine learning algorithms with interfaces similar to Scikit-Learn in Python.
-  SVMKit currently supports Linear / Kernel Support Vector Machine,
+  SVMKit supports Linear / Kernel Support Vector Machine,
   Logistic Regression, Linear Regression, Ridge, Lasso, Factorization Machine,
   Naive Bayes, Decision Tree, AdaBoost, Random Forest, K-nearest neighbor algorithm,
-  K-Means, DBSCAN, Principal Component Analysis, Non-negative Matrix Factorization
-  and cross-validation.
+  K-Means, DBSCAN, Principal Component Analysis, and Non-negative Matrix Factorization.
+  Note that the SVMKit has been deprecated and has been renamed to Rumale.
 email:
 - yoshoku@outlook.com
 executables: []
 extensions: []
 extra_rdoc_files: []
 files:
-- ".coveralls.yml"
 - ".gitignore"
 - ".rspec"
-- ".rubocop.yml"
-- ".rubocop_todo.yml"
 - ".travis.yml"
 - CODE_OF_CONDUCT.md
 - Gemfile
-- HISTORY.md
 - LICENSE.txt
 - README.md
 - Rakefile
 - bin/console
 - bin/setup
 - lib/svmkit.rb
-- lib/svmkit/base/base_estimator.rb
-- lib/svmkit/base/classifier.rb
-- lib/svmkit/base/cluster_analyzer.rb
-- lib/svmkit/base/evaluator.rb
-- lib/svmkit/base/regressor.rb
-- lib/svmkit/base/splitter.rb
-- lib/svmkit/base/transformer.rb
-- lib/svmkit/clustering/dbscan.rb
-- lib/svmkit/clustering/k_means.rb
-- lib/svmkit/dataset.rb
-- lib/svmkit/decomposition/nmf.rb
-- lib/svmkit/decomposition/pca.rb
-- lib/svmkit/ensemble/ada_boost_classifier.rb
-- lib/svmkit/ensemble/ada_boost_regressor.rb
-- lib/svmkit/ensemble/random_forest_classifier.rb
-- lib/svmkit/ensemble/random_forest_regressor.rb
-- lib/svmkit/evaluation_measure/accuracy.rb
-- lib/svmkit/evaluation_measure/f_score.rb
-- lib/svmkit/evaluation_measure/log_loss.rb
-- lib/svmkit/evaluation_measure/mean_absolute_error.rb
-- lib/svmkit/evaluation_measure/mean_squared_error.rb
-- lib/svmkit/evaluation_measure/normalized_mutual_information.rb
-- lib/svmkit/evaluation_measure/precision.rb
-- lib/svmkit/evaluation_measure/precision_recall.rb
-- lib/svmkit/evaluation_measure/purity.rb
-- lib/svmkit/evaluation_measure/r2_score.rb
-- lib/svmkit/evaluation_measure/recall.rb
-- lib/svmkit/kernel_approximation/rbf.rb
-- lib/svmkit/kernel_machine/kernel_svc.rb
-- lib/svmkit/linear_model/lasso.rb
-- lib/svmkit/linear_model/linear_regression.rb
-- lib/svmkit/linear_model/logistic_regression.rb
-- lib/svmkit/linear_model/ridge.rb
-- lib/svmkit/linear_model/sgd_linear_estimator.rb
-- lib/svmkit/linear_model/svc.rb
-- lib/svmkit/linear_model/svr.rb
-- lib/svmkit/model_selection/cross_validation.rb
-- lib/svmkit/model_selection/grid_search_cv.rb
-- lib/svmkit/model_selection/k_fold.rb
-- lib/svmkit/model_selection/stratified_k_fold.rb
-- lib/svmkit/multiclass/one_vs_rest_classifier.rb
-- lib/svmkit/naive_bayes/naive_bayes.rb
-- lib/svmkit/nearest_neighbors/k_neighbors_classifier.rb
-- lib/svmkit/nearest_neighbors/k_neighbors_regressor.rb
-- lib/svmkit/optimizer/nadam.rb
-- lib/svmkit/optimizer/rmsprop.rb
-- lib/svmkit/optimizer/sgd.rb
-- lib/svmkit/optimizer/yellow_fin.rb
-- lib/svmkit/pairwise_metric.rb
-- lib/svmkit/pipeline/pipeline.rb
-- lib/svmkit/polynomial_model/factorization_machine_classifier.rb
-- lib/svmkit/polynomial_model/factorization_machine_regressor.rb
-- lib/svmkit/preprocessing/l2_normalizer.rb
-- lib/svmkit/preprocessing/label_encoder.rb
-- lib/svmkit/preprocessing/min_max_scaler.rb
-- lib/svmkit/preprocessing/one_hot_encoder.rb
-- lib/svmkit/preprocessing/standard_scaler.rb
-- lib/svmkit/probabilistic_output.rb
-- lib/svmkit/tree/decision_tree_classifier.rb
-- lib/svmkit/tree/decision_tree_regressor.rb
-- lib/svmkit/tree/node.rb
-- lib/svmkit/utils.rb
-- lib/svmkit/validation.rb
-- lib/svmkit/values.rb
-- lib/svmkit/version.rb
 - svmkit.gemspec
 homepage: https://github.com/yoshoku/svmkit
 licenses:
 - BSD-2-Clause
 metadata: {}
-post_install_message: 
+post_install_message: |
+  -------------------------------------------------------------------------
+  Note that the SVMKit has been deprecated and has been renamed to Rumale.
+  Please see https://rubygems.org/gems/rumale
+  -------------------------------------------------------------------------
 rdoc_options: []
 require_paths:
 - lib
@@ -187,7 +122,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="
     - !ruby/object:Gem::Version
-      version: '2.1'
+      version: '2.3'
 required_rubygems_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="

data/.coveralls.yml

@@ -1 +0,0 @@
-service_name: travis-ci

data/.rubocop.yml

@@ -1,47 +0,0 @@
-inherit_from: .rubocop_todo.yml
-
-AllCops:
-  TargetRubyVersion: 2.2
-  DisplayCopNames: true
-  DisplayStyleGuide: true
-
-Documentation:
-  Enabled: false
-
-Metrics/LineLength:
-  Max: 145
-  IgnoredPatterns: ['(\A|\s)#']
-
-Metrics/ModuleLength:
-  Max: 200
-
-Metrics/ClassLength:
-  Max: 200
-
-Metrics/MethodLength:
-  Max: 40
-
-Metrics/AbcSize:
-  Max: 60
-
-Metrics/BlockLength:
-  Exclude:
-    - 'spec/**/*'
-
-ParameterLists:
-  Max: 10
-
-Security/MarshalLoad:
-  Enabled: false
-
-Naming/UncommunicativeMethodParamName:
-  Enabled: false
-
-Style/FormatStringToken:
-  Enabled: false
-
-Style/NumericLiterals:
-  Enabled: false
-
-Layout/EmptyLineAfterGuardClause:
-  Enabled: false