sequenceserver 2.0.0.rc7 → 2.0.0.rc8

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Files changed (530) hide show
  1. checksums.yaml +4 -4
  2. data/bin/chromedriver +0 -0
  3. data/bin/geckodriver +0 -0
  4. data/bin/sequenceserver +31 -4
  5. data/lib/sequenceserver.rb +6 -1
  6. data/lib/sequenceserver/database.rb +7 -42
  7. data/lib/sequenceserver/exceptions.rb +14 -0
  8. data/lib/sequenceserver/makeblastdb.rb +121 -41
  9. data/lib/sequenceserver/routes.rb +1 -1
  10. data/lib/sequenceserver/version.rb +1 -1
  11. data/public/css/sequenceserver.css +8 -2
  12. data/public/css/sequenceserver.min.css +1 -1
  13. data/public/js/jquery_world.js +1 -1
  14. data/public/js/report.js +1 -2
  15. data/public/js/search.js +40 -18
  16. data/public/js/sidebar.js +50 -26
  17. data/public/sequenceserver-report.min.js +17 -17
  18. data/public/sequenceserver-search.min.js +2 -2
  19. data/views/layout.erb +1 -1
  20. data/views/report.erb +1 -1
  21. data/views/search.erb +1 -1
  22. metadata +4 -510
  23. data/.bootstrap/config.json +0 -433
  24. data/.codeclimate.yml +0 -31
  25. data/.csslintrc +0 -2
  26. data/.dockerignore +0 -1
  27. data/.eslintignore +0 -1
  28. data/.eslintrc.json +0 -36
  29. data/.gitignore +0 -56
  30. data/.mailmap +0 -5
  31. data/.rspec +0 -3
  32. data/.rubocop.yml +0 -61
  33. data/.travis.yml +0 -74
  34. data/AppImage/recipe.yml +0 -15
  35. data/AppImage/sequenceserver.desktop +0 -8
  36. data/AppImage/sequenceserver.png +0 -0
  37. data/AppImage/sequenceserver.sh +0 -16
  38. data/Dockerfile +0 -25
  39. data/LICENSE.txt +0 -661
  40. data/LICENSE/Apache.txt +0 -176
  41. data/LICENSE/d3.txt +0 -26
  42. data/README.md +0 -161
  43. data/package.json +0 -48
  44. data/public/vendor/.dependencies.json +0 -18
  45. data/public/vendor/.loaderversions +0 -1
  46. data/public/vendor/github/components/jquery@2.1.4/.gitignore +0 -1
  47. data/public/vendor/github/components/jquery@2.1.4/.jspm-hash +0 -1
  48. data/public/vendor/github/components/jquery@2.1.4/.jspm.json +0 -37
  49. data/public/vendor/github/components/jqueryui@1.11.4/.gitignore +0 -4
  50. data/public/vendor/github/components/jqueryui@1.11.4/.jspm-hash +0 -1
  51. data/public/vendor/github/components/jqueryui@1.11.4/.jspm.json +0 -136
  52. data/public/vendor/github/components/jqueryui@1.11.4/ui/.jshintrc +0 -24
  53. data/public/vendor/github/jspm/nodelibs-buffer@0.1.0/.jspm-hash +0 -1
  54. data/public/vendor/github/jspm/nodelibs-buffer@0.1.0/.jspm.json +0 -10
  55. data/public/vendor/github/jspm/nodelibs-events@0.1.1/.jspm-hash +0 -1
  56. data/public/vendor/github/jspm/nodelibs-events@0.1.1/.jspm.json +0 -10
  57. data/public/vendor/github/jspm/nodelibs-fs@0.1.2/.jspm-hash +0 -1
  58. data/public/vendor/github/jspm/nodelibs-module@0.1.0/.jspm-hash +0 -1
  59. data/public/vendor/github/jspm/nodelibs-module@0.1.0/.jspm.json +0 -3
  60. data/public/vendor/github/jspm/nodelibs-path@0.1.0/.jspm-hash +0 -1
  61. data/public/vendor/github/jspm/nodelibs-path@0.1.0/.jspm.json +0 -10
  62. data/public/vendor/github/jspm/nodelibs-process@0.1.1/.jspm-hash +0 -1
  63. data/public/vendor/github/jspm/nodelibs-stream@0.1.0/.jspm-hash +0 -1
  64. data/public/vendor/github/jspm/nodelibs-stream@0.1.0/.jspm.json +0 -10
  65. data/public/vendor/github/jspm/nodelibs-util@0.1.0/.jspm-hash +0 -1
  66. data/public/vendor/github/jspm/nodelibs-util@0.1.0/.jspm.json +0 -10
  67. data/public/vendor/github/mbostock/d3@3.5.6/.jspm-hash +0 -1
  68. data/public/vendor/github/mbostock/d3@3.5.6/.jspm.json +0 -76
  69. data/public/vendor/github/nicgirault/circosJs@1.7.0/.gitignore +0 -10
  70. data/public/vendor/github/nicgirault/circosJs@1.7.0/.jspm-hash +0 -1
  71. data/public/vendor/github/systemjs/plugin-css@0.1.15/.gitignore +0 -1
  72. data/public/vendor/github/systemjs/plugin-css@0.1.15/.jspm-hash +0 -1
  73. data/public/vendor/github/systemjs/plugin-css@0.1.15/.jspm.json +0 -4
  74. data/public/vendor/github/systemjs/plugin-json@0.1.0/.jspm-hash +0 -1
  75. data/public/vendor/github/twbs/bootstrap@3.3.5/.jspm-hash +0 -1
  76. data/public/vendor/github/twbs/bootstrap@3.3.5/.jspm.json +0 -100
  77. data/public/vendor/npm/amdefine@1.0.0/.jspm-hash +0 -1
  78. data/public/vendor/npm/amdefine@1.0.0/.jspm.json +0 -55
  79. data/public/vendor/npm/babel-core@5.8.23/.jspm-hash +0 -1
  80. data/public/vendor/npm/babel-runtime@5.8.20/.jspm-hash +0 -1
  81. data/public/vendor/npm/babel-runtime@5.8.20/.npmignore +0 -2
  82. data/public/vendor/npm/base62@0.1.1/.jspm-hash +0 -1
  83. data/public/vendor/npm/base62@0.1.1/.jspm.json +0 -49
  84. data/public/vendor/npm/base62@0.1.1/.travis.yml +0 -4
  85. data/public/vendor/npm/base64-js@0.0.8/.jspm-hash +0 -1
  86. data/public/vendor/npm/base64-js@0.0.8/.jspm.json +0 -77
  87. data/public/vendor/npm/base64-js@0.0.8/.travis.yml +0 -5
  88. data/public/vendor/npm/buffer@3.4.3/.jspm-hash +0 -1
  89. data/public/vendor/npm/buffer@3.4.3/.jspm.json +0 -105
  90. data/public/vendor/npm/buffer@3.4.3/.npmignore +0 -1
  91. data/public/vendor/npm/buffer@3.4.3/.travis.yml +0 -8
  92. data/public/vendor/npm/buffer@3.4.3/.zuul.yml +0 -20
  93. data/public/vendor/npm/core-js@1.1.2/.eslintrc +0 -36
  94. data/public/vendor/npm/core-js@1.1.2/.gitattributes +0 -1
  95. data/public/vendor/npm/core-js@1.1.2/.jspm-hash +0 -1
  96. data/public/vendor/npm/core-js@1.1.2/.npmignore +0 -10
  97. data/public/vendor/npm/core-js@1.1.2/.travis.yml +0 -3
  98. data/public/vendor/npm/core-util-is@1.0.1/.jspm-hash +0 -1
  99. data/public/vendor/npm/core-util-is@1.0.1/.jspm.json +0 -58
  100. data/public/vendor/npm/envify@3.4.0/.jspm-hash +0 -1
  101. data/public/vendor/npm/envify@3.4.0/.jspm.json +0 -72
  102. data/public/vendor/npm/envify@3.4.0/.npmignore +0 -2
  103. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/.jspm-hash +0 -1
  104. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/.jspm.json +0 -102
  105. data/public/vendor/npm/events@1.0.2/.jspm-hash +0 -1
  106. data/public/vendor/npm/events@1.0.2/.jspm.json +0 -67
  107. data/public/vendor/npm/events@1.0.2/.npmignore +0 -1
  108. data/public/vendor/npm/events@1.0.2/.travis.yml +0 -7
  109. data/public/vendor/npm/events@1.0.2/.zuul.yml +0 -12
  110. data/public/vendor/npm/font-awesome@4.4.0/.jspm-hash +0 -1
  111. data/public/vendor/npm/font-awesome@4.4.0/.jspm.json +0 -81
  112. data/public/vendor/npm/font-awesome@4.4.0/.npmignore +0 -42
  113. data/public/vendor/npm/ieee754@1.1.6/.jspm-hash +0 -1
  114. data/public/vendor/npm/ieee754@1.1.6/.jspm.json +0 -70
  115. data/public/vendor/npm/ieee754@1.1.6/.travis.yml +0 -7
  116. data/public/vendor/npm/ieee754@1.1.6/.zuul.yml +0 -20
  117. data/public/vendor/npm/inherits@2.0.1/.jspm-hash +0 -1
  118. data/public/vendor/npm/inherits@2.0.1/.jspm.json +0 -60
  119. data/public/vendor/npm/is-array@1.0.1/.jepso-ci.json +0 -3
  120. data/public/vendor/npm/is-array@1.0.1/.jspm-hash +0 -1
  121. data/public/vendor/npm/is-array@1.0.1/.jspm.json +0 -42
  122. data/public/vendor/npm/is-array@1.0.1/.npmignore +0 -0
  123. data/public/vendor/npm/isarray@0.0.1/.jspm-hash +0 -1
  124. data/public/vendor/npm/isarray@0.0.1/.jspm.json +0 -51
  125. data/public/vendor/npm/jstransform@10.1.0/.jshintrc +0 -28
  126. data/public/vendor/npm/jstransform@10.1.0/.jspm-hash +0 -1
  127. data/public/vendor/npm/jstransform@10.1.0/.jspm.json +0 -95
  128. data/public/vendor/npm/jstransform@10.1.0/.npmignore +0 -4
  129. data/public/vendor/npm/jstransform@10.1.0/.travis.yml +0 -8
  130. data/public/vendor/npm/path-browserify@0.0.0/.jspm-hash +0 -1
  131. data/public/vendor/npm/path-browserify@0.0.0/.jspm.json +0 -56
  132. data/public/vendor/npm/process@0.10.1/.jspm-hash +0 -1
  133. data/public/vendor/npm/react@0.13.3/.jspm-hash +0 -1
  134. data/public/vendor/npm/react@0.13.3/.jspm.json +0 -77
  135. data/public/vendor/npm/readable-stream@1.1.13/.jspm-hash +0 -1
  136. data/public/vendor/npm/readable-stream@1.1.13/.jspm.json +0 -95
  137. data/public/vendor/npm/readable-stream@1.1.13/.npmignore +0 -5
  138. data/public/vendor/npm/source-map@0.1.31/.jspm-hash +0 -1
  139. data/public/vendor/npm/source-map@0.1.31/.jspm.json +0 -133
  140. data/public/vendor/npm/source-map@0.1.31/.npmignore +0 -2
  141. data/public/vendor/npm/source-map@0.1.31/.travis.yml +0 -4
  142. data/public/vendor/npm/stream-browserify@1.0.0/.jspm-hash +0 -1
  143. data/public/vendor/npm/stream-browserify@1.0.0/.jspm.json +0 -77
  144. data/public/vendor/npm/stream-browserify@1.0.0/.travis.yml +0 -4
  145. data/public/vendor/npm/string_decoder@0.10.31/.jspm-hash +0 -1
  146. data/public/vendor/npm/string_decoder@0.10.31/.jspm.json +0 -58
  147. data/public/vendor/npm/string_decoder@0.10.31/.npmignore +0 -2
  148. data/public/vendor/npm/through@2.3.8/.jspm-hash +0 -1
  149. data/public/vendor/npm/through@2.3.8/.jspm.json +0 -72
  150. data/public/vendor/npm/through@2.3.8/.travis.yml +0 -5
  151. data/public/vendor/npm/underscore@1.8.3/.jspm-hash +0 -1
  152. data/public/vendor/npm/underscore@1.8.3/.jspm.json +0 -74
  153. data/public/vendor/npm/util@0.10.3/.jspm-hash +0 -1
  154. data/public/vendor/npm/util@0.10.3/.jspm.json +0 -58
  155. data/public/vendor/npm/util@0.10.3/.npmignore +0 -1
  156. data/public/vendor/npm/util@0.10.3/.travis.yml +0 -8
  157. data/public/vendor/npm/util@0.10.3/.zuul.yml +0 -10
  158. data/public/vendor/npm/webshim@1.15.8/.gitattributes +0 -12
  159. data/public/vendor/npm/webshim@1.15.8/.jspm-hash +0 -1
  160. data/public/vendor/npm/webshim@1.15.8/.jspm.json +0 -92
  161. data/public/vendor/npm/webshim@1.15.8/.npmignore +0 -16
  162. data/public/vendor/npm/webshim@1.15.8/.project +0 -12
  163. data/public/vendor/npm/webshim@1.15.8/demos/demos/filereader/upload/.keep +0 -0
  164. data/sequenceserver.gemspec +0 -55
  165. data/spec/blast_versions/blast_2.2.30/blast_2.2.30_spec.rb +0 -228
  166. data/spec/blast_versions/blast_2.2.30/import_spec_capybara_local_2.2.30.rb +0 -583
  167. data/spec/blast_versions/blast_2.2.31/blast_2.2.31_spec.rb +0 -228
  168. data/spec/blast_versions/blast_2.2.31/import_spec_capybara_local_2.2.31.rb +0 -587
  169. data/spec/blast_versions/blast_2.3.0/blast_2.3.0_spec.rb +0 -229
  170. data/spec/blast_versions/blast_2.3.0/import_spec_capybara_local_2.3.0.rb +0 -587
  171. data/spec/blast_versions/blast_2.4.0/blast_2.4.0_spec.rb +0 -228
  172. data/spec/blast_versions/blast_2.4.0/import_spec_capybara_local_2.4.0.rb +0 -588
  173. data/spec/blast_versions/blast_2.5.0/blast_2.5.0_spec.rb +0 -228
  174. data/spec/blast_versions/blast_2.5.0/import_spec_capybara_local_2.5.0.rb +0 -587
  175. data/spec/blast_versions/blast_2.6.0/blast_2.6.0_spec.rb +0 -228
  176. data/spec/blast_versions/blast_2.6.0/import_spec_capybara_local_2.6.0.rb +0 -587
  177. data/spec/blast_versions/blast_2.7.1/blast_2.7.1_spec.rb +0 -228
  178. data/spec/blast_versions/blast_2.7.1/import_spec_capybara_local_2.7.1.rb +0 -587
  179. data/spec/blast_versions/blast_2.8.1/blast_2.8.1_spec.rb +0 -228
  180. data/spec/blast_versions/blast_2.8.1/import_spec_capybara_local_2.8.1.rb +0 -587
  181. data/spec/blast_versions/blast_2.9.0/blast_2.9.0_spec.rb +0 -228
  182. data/spec/blast_versions/blast_2.9.0/import_spec_capybara_local_2.9.0.rb +0 -585
  183. data/spec/blast_versions/diamond_0.9.24/diamond_0.9.24_spec.rb +0 -176
  184. data/spec/blast_versions/diamond_0.9.24/import_spec_capybara_local_0.9.24.rb +0 -237
  185. data/spec/capybara_spec.rb +0 -345
  186. data/spec/config_spec.rb +0 -87
  187. data/spec/database/funky_ids/funky_ids.fa +0 -16
  188. data/spec/database/funky_ids/v4/funky_ids.fa.nhd +0 -8
  189. data/spec/database/funky_ids/v4/funky_ids.fa.nhi +0 -0
  190. data/spec/database/funky_ids/v4/funky_ids.fa.nhr +0 -0
  191. data/spec/database/funky_ids/v4/funky_ids.fa.nin +0 -0
  192. data/spec/database/funky_ids/v4/funky_ids.fa.nog +0 -0
  193. data/spec/database/funky_ids/v4/funky_ids.fa.nsd +0 -15
  194. data/spec/database/funky_ids/v4/funky_ids.fa.nsi +0 -0
  195. data/spec/database/funky_ids/v4/funky_ids.fa.nsq +0 -0
  196. data/spec/database/funky_ids/v5/funky_ids.fa.ndb +0 -0
  197. data/spec/database/funky_ids/v5/funky_ids.fa.nhd +0 -8
  198. data/spec/database/funky_ids/v5/funky_ids.fa.nhi +0 -0
  199. data/spec/database/funky_ids/v5/funky_ids.fa.nhr +0 -0
  200. data/spec/database/funky_ids/v5/funky_ids.fa.nin +0 -0
  201. data/spec/database/funky_ids/v5/funky_ids.fa.nog +0 -0
  202. data/spec/database/funky_ids/v5/funky_ids.fa.nos +0 -0
  203. data/spec/database/funky_ids/v5/funky_ids.fa.not +0 -0
  204. data/spec/database/funky_ids/v5/funky_ids.fa.nsq +0 -0
  205. data/spec/database/funky_ids/v5/funky_ids.fa.ntf +0 -0
  206. data/spec/database/funky_ids/v5/funky_ids.fa.nto +0 -0
  207. data/spec/database/funky_sequences/README.md +0 -14
  208. data/spec/database/funky_sequences/funky_aa_sequences.fa +0 -7
  209. data/spec/database/funky_sequences/funky_aa_sequences.fa.phd +0 -3
  210. data/spec/database/funky_sequences/funky_aa_sequences.fa.phi +0 -0
  211. data/spec/database/funky_sequences/funky_aa_sequences.fa.phr +0 -0
  212. data/spec/database/funky_sequences/funky_aa_sequences.fa.pin +0 -0
  213. data/spec/database/funky_sequences/funky_aa_sequences.fa.pog +0 -0
  214. data/spec/database/funky_sequences/funky_aa_sequences.fa.psd +0 -6
  215. data/spec/database/funky_sequences/funky_aa_sequences.fa.psi +0 -0
  216. data/spec/database/funky_sequences/funky_aa_sequences.fa.psq +0 -0
  217. data/spec/database/funky_sequences/funky_na_sequences.fa +0 -2
  218. data/spec/database/funky_sequences/funky_na_sequences.fa.nhr +0 -0
  219. data/spec/database/funky_sequences/funky_na_sequences.fa.nin +0 -0
  220. data/spec/database/funky_sequences/funky_na_sequences.fa.nog +0 -0
  221. data/spec/database/funky_sequences/funky_na_sequences.fa.nsd +0 -2
  222. data/spec/database/funky_sequences/funky_na_sequences.fa.nsi +0 -0
  223. data/spec/database/funky_sequences/funky_na_sequences.fa.nsq +0 -0
  224. data/spec/database/ox_parse_error/query.fa +0 -1
  225. data/spec/database/ox_parse_error/rand1.fa +0 -2
  226. data/spec/database/ox_parse_error/rand1.fa.nhd +0 -1
  227. data/spec/database/ox_parse_error/rand1.fa.nhi +0 -0
  228. data/spec/database/ox_parse_error/rand1.fa.nhr +0 -0
  229. data/spec/database/ox_parse_error/rand1.fa.nin +0 -0
  230. data/spec/database/ox_parse_error/rand1.fa.nog +0 -0
  231. data/spec/database/ox_parse_error/rand1.fa.nsd +0 -2
  232. data/spec/database/ox_parse_error/rand1.fa.nsi +0 -0
  233. data/spec/database/ox_parse_error/rand1.fa.nsq +0 -0
  234. data/spec/database/ox_parse_error/rand2.fa +0 -2
  235. data/spec/database/ox_parse_error/rand2.fa.nhd +0 -1
  236. data/spec/database/ox_parse_error/rand2.fa.nhi +0 -0
  237. data/spec/database/ox_parse_error/rand2.fa.nhr +0 -0
  238. data/spec/database/ox_parse_error/rand2.fa.nin +0 -0
  239. data/spec/database/ox_parse_error/rand2.fa.nog +0 -0
  240. data/spec/database/ox_parse_error/rand2.fa.nsd +0 -2
  241. data/spec/database/ox_parse_error/rand2.fa.nsi +0 -0
  242. data/spec/database/ox_parse_error/rand2.fa.nsq +0 -0
  243. data/spec/database/ox_parse_error_unique_ids/query.fa +0 -1
  244. data/spec/database/ox_parse_error_unique_ids/rand1.fa +0 -2
  245. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nhd +0 -1
  246. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nhi +0 -0
  247. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nhr +0 -0
  248. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nin +0 -0
  249. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nog +0 -0
  250. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nsd +0 -2
  251. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nsi +0 -0
  252. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nsq +0 -0
  253. data/spec/database/ox_parse_error_unique_ids/rand2.fa +0 -2
  254. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nhd +0 -1
  255. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nhi +0 -0
  256. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nhr +0 -0
  257. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nin +0 -0
  258. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nog +0 -0
  259. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nsd +0 -2
  260. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nsi +0 -0
  261. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nsq +0 -0
  262. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa +0 -6
  263. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhd +0 -1
  264. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhi +0 -0
  265. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhr +0 -0
  266. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nin +0 -0
  267. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nog +0 -0
  268. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsd +0 -2
  269. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsi +0 -0
  270. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsq +0 -0
  271. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.ndb +0 -0
  272. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhd +0 -8
  273. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhi +0 -0
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  481. data/spec/dotdir/diamond_0.9.24/blastx/job.yaml +0 -8
  482. data/spec/dotdir/diamond_0.9.24/blastx_nohits/DIAMOND_BLASTX_NOHITS_0.9.24.xml +0 -41
  483. data/spec/dotdir/diamond_0.9.24/blastx_nohits/job.yaml +0 -8
  484. data/spec/download_helper.rb +0 -35
  485. data/spec/empty_config.yml +0 -0
  486. data/spec/makeblastdb_spec.rb +0 -121
  487. data/spec/routes_spec.rb +0 -93
  488. data/spec/sample.conf +0 -2
  489. data/spec/sequence_spec.rb +0 -99
  490. data/spec/sequences/MH011443_1_gi_1486783306_gb_MH011443_1.txt +0 -6
  491. data/spec/sequences/MH011443_1_gi_1486783307_gb_AYF55702_1.txt +0 -6
  492. data/spec/sequences/MH011443_1_gi_1528997474_gb_MH447967_1.txt +0 -30
  493. data/spec/sequences/MH011443_1_sp_P04637_P53_HUMAN.txt +0 -6
  494. data/spec/sequences/Nucleotide_TP53_COX41.fasta +0 -15
  495. data/spec/sequences/Protein_TP53_COX41.fasta +0 -12
  496. data/spec/sequences/Query_1_SI2_2_0_06267.txt +0 -6
  497. data/spec/sequences/alignment-2_hits.txt +0 -12
  498. data/spec/sequences/alignment-35_hits_diamond_blastp.txt +0 -210
  499. data/spec/sequences/alignment-35_hits_diamond_blastx.txt +0 -210
  500. data/spec/sequences/alignment-3_hits.txt +0 -18
  501. data/spec/sequences/alignment-40_hits_blastn.txt +0 -246
  502. data/spec/sequences/alignment-40_hits_blastp.txt +0 -240
  503. data/spec/sequences/alignment-40_hits_blastp_2.2.30.txt +0 -240
  504. data/spec/sequences/alignment-40_hits_blastx.txt +0 -240
  505. data/spec/sequences/alignment-40_hits_tblastn.txt +0 -240
  506. data/spec/sequences/alignment-40_hits_tblastn_2.2.30.txt +0 -240
  507. data/spec/sequences/alignment-40_hits_tblastx.txt +0 -2664
  508. data/spec/sequences/alignment-4_hits.txt +0 -24
  509. data/spec/sequences/alignment-4_hits_blastn.txt +0 -24
  510. data/spec/sequences/alignment-4_hits_blastp.txt +0 -24
  511. data/spec/sequences/alignment-4_hits_blastp_2.2.30.txt +0 -24
  512. data/spec/sequences/alignment-4_hits_blastx.txt +0 -24
  513. data/spec/sequences/alignment-4_hits_diamond_blastp.txt +0 -24
  514. data/spec/sequences/alignment-4_hits_diamond_blastx.txt +0 -24
  515. data/spec/sequences/alignment-4_hits_tblastn.txt +0 -24
  516. data/spec/sequences/alignment-4_hits_tblastn_2.2.30.txt +0 -24
  517. data/spec/sequences/alignment-4_hits_tblastx.txt +0 -318
  518. data/spec/sequences/nucleotide_query.fa +0 -21
  519. data/spec/sequences/problematic_query.fa +0 -5
  520. data/spec/sequences/protein_query.fa +0 -9
  521. data/spec/sequences/sample_query_fire_ant_obps.fa +0 -44
  522. data/spec/sequences/sequenceserver-2_hits.fa +0 -10
  523. data/spec/sequences/sequenceserver-SI2.2.0_06267.fa +0 -5
  524. data/spec/sequences/sp_P04637_P53_HUMAN_gi_1099170394_ref_XP_018868681_1.txt +0 -6
  525. data/spec/sequences/sp_P04637_P53_HUMAN_gi_120407068_ref_NP_000537_3.txt +0 -6
  526. data/spec/sequences/sp_P04637_P53_HUMAN_gi_1484127324_gb_MG595988_1.txt +0 -6
  527. data/spec/sequences/sp_P04637_P53_HUMAN_gi_395440626_gb_JQ694049_1.txt +0 -6
  528. data/spec/sequences/sp_P04637_P53_HUMAN_sp_P04637_P53_HUMAN.txt +0 -6
  529. data/spec/sequenceserver_spec.rb +0 -90
  530. data/spec/spec_helper.rb +0 -63
data/spec/dotdir/diamond_0.9.24/blastp/job.yaml DELETED
@@ -1,8 +0,0 @@
1
- --- !ruby/object:SequenceServer::BLAST::Job
2
- id: 'diamond_0.9.24/blastp'
3
- submitted_at: 2019-06-18 15:48:44.652057200 +01:00
4
- imported_xml_file: DIAMOND_BLASTP_0.9.24.xml
5
- advanced_params: {}
6
- databases: []
7
- completed_at: 2019-06-18 15:48:44.660541400 +01:00
8
- exitstatus: 0
data/spec/dotdir/diamond_0.9.24/blastx/DIAMOND_BLASTX_0.9.24.xml DELETED
@@ -1,1040 +0,0 @@
1
- <?xml version="1.0"?>
2
- <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
3
- <BlastOutput>
4
- <BlastOutput_program>blastx</BlastOutput_program>
5
- <BlastOutput_version>diamond 0.9.24</BlastOutput_version>
6
- <BlastOutput_reference>Benjamin Buchfink, Xie Chao, and Daniel Huson (2015), &quot;Fast and sensitive protein alignment using DIAMOND&quot;, Nature Methods 12:59-60.</BlastOutput_reference>
7
- <BlastOutput_db>nr.dmnd</BlastOutput_db>
8
- <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
9
- <BlastOutput_query-def>MH011443.1 Homo sapiens TP53 (TP53) gene, exon 5 and partial cds</BlastOutput_query-def>
10
- <BlastOutput_query-len>123</BlastOutput_query-len>
11
- <BlastOutput_param>
12
- <Parameters>
13
- <Parameters_matrix>blosum62</Parameters_matrix>
14
- <Parameters_expect>0.001</Parameters_expect>
15
- <Parameters_gap-open>11</Parameters_gap-open>
16
- <Parameters_gap-extend>1</Parameters_gap-extend>
17
- <Parameters_filter>F</Parameters_filter>
18
- </Parameters>
19
- </BlastOutput_param>
20
- <BlastOutput_iterations>
21
- <Iteration>
22
- <Iteration_iter-num>1</Iteration_iter-num>
23
- <Iteration_query-ID>Query_1</Iteration_query-ID>
24
- <Iteration_query-def>MH011443.1 Homo sapiens TP53 (TP53) gene, exon 5 and partial cds</Iteration_query-def>
25
- <Iteration_query-len>123</Iteration_query-len>
26
- <Iteration_hits>
27
- <Hit>
28
- <Hit_num>1</Hit_num>
29
- <Hit_id>sp|P04637|P53_HUMAN</Hit_id>
30
- <Hit_def>Cellular tumor antigen p53 OS=Homo sapiens OX=9606 GN=TP53 PE=1 SV=4</Hit_def>
31
- <Hit_accession>P04637</Hit_accession>
32
- <Hit_len>393</Hit_len>
33
- <Hit_hsps>
34
- <Hsp>
35
- <Hsp_num>1</Hsp_num>
36
- <Hsp_bit-score>91.7</Hsp_bit-score>
37
- <Hsp_score>226</Hsp_score>
38
- <Hsp_evalue>1.8e-18</Hsp_evalue>
39
- <Hsp_query-from>1</Hsp_query-from>
40
- <Hsp_query-to>124</Hsp_query-to>
41
- <Hsp_hit-from>146</Hsp_hit-from>
42
- <Hsp_hit-to>186</Hsp_hit-to>
43
- <Hsp_query-frame>1</Hsp_query-frame>
44
- <Hsp_hit-frame>0</Hsp_hit-frame>
45
- <Hsp_identity>40</Hsp_identity>
46
- <Hsp_positive>41</Hsp_positive>
47
- <Hsp_gaps>0</Hsp_gaps>
48
- <Hsp_align-len>41</Hsp_align-len>
49
- <Hsp_qseq>WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD</Hsp_qseq>
50
- <Hsp_hseq>WVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSD</Hsp_hseq>
51
- <Hsp_midline>WVDSTPPPGTRVRA+AIYKQSQHMTEVVRRCPHHERCSDSD</Hsp_midline>
52
- </Hsp>
53
- </Hit_hsps>
54
- </Hit>
55
- <Hit>
56
- <Hit_num>2</Hit_num>
57
- <Hit_id>sp|P56424|P53_MACMU</Hit_id>
58
- <Hit_def>Cellular tumor antigen p53 OS=Macaca mulatta OX=9544 GN=TP53 PE=2 SV=1</Hit_def>
59
- <Hit_accession>P56424</Hit_accession>
60
- <Hit_len>393</Hit_len>
61
- <Hit_hsps>
62
- <Hsp>
63
- <Hsp_num>1</Hsp_num>
64
- <Hsp_bit-score>90.1</Hsp_bit-score>
65
- <Hsp_score>222</Hsp_score>
66
- <Hsp_evalue>5.2e-18</Hsp_evalue>
67
- <Hsp_query-from>1</Hsp_query-from>
68
- <Hsp_query-to>124</Hsp_query-to>
69
- <Hsp_hit-from>146</Hsp_hit-from>
70
- <Hsp_hit-to>186</Hsp_hit-to>
71
- <Hsp_query-frame>1</Hsp_query-frame>
72
- <Hsp_hit-frame>0</Hsp_hit-frame>
73
- <Hsp_identity>39</Hsp_identity>
74
- <Hsp_positive>41</Hsp_positive>
75
- <Hsp_gaps>0</Hsp_gaps>
76
- <Hsp_align-len>41</Hsp_align-len>
77
- <Hsp_qseq>WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD</Hsp_qseq>
78
- <Hsp_hseq>WVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSD</Hsp_hseq>
79
- <Hsp_midline>WVDSTPPPG+RVRA+AIYKQSQHMTEVVRRCPHHERCSDSD</Hsp_midline>
80
- </Hsp>
81
- </Hit_hsps>
82
- </Hit>
83
- <Hit>
84
- <Hit_num>3</Hit_num>
85
- <Hit_id>sp|Q95330|P53_RABIT</Hit_id>
86
- <Hit_def>Cellular tumor antigen p53 OS=Oryctolagus cuniculus OX=9986 GN=TP53 PE=2 SV=1</Hit_def>
87
- <Hit_accession>Q95330</Hit_accession>
88
- <Hit_len>391</Hit_len>
89
- <Hit_hsps>
90
- <Hsp>
91
- <Hsp_num>1</Hsp_num>
92
- <Hsp_bit-score>90.1</Hsp_bit-score>
93
- <Hsp_score>222</Hsp_score>
94
- <Hsp_evalue>5.2e-18</Hsp_evalue>
95
- <Hsp_query-from>1</Hsp_query-from>
96
- <Hsp_query-to>124</Hsp_query-to>
97
- <Hsp_hit-from>143</Hsp_hit-from>
98
- <Hsp_hit-to>183</Hsp_hit-to>
99
- <Hsp_query-frame>1</Hsp_query-frame>
100
- <Hsp_hit-frame>0</Hsp_hit-frame>
101
- <Hsp_identity>39</Hsp_identity>
102
- <Hsp_positive>41</Hsp_positive>
103
- <Hsp_gaps>0</Hsp_gaps>
104
- <Hsp_align-len>41</Hsp_align-len>
105
- <Hsp_qseq>WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD</Hsp_qseq>
106
- <Hsp_hseq>WVDSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDSD</Hsp_hseq>
107
- <Hsp_midline>WVDSTPPPGTRVRA+AIYK+SQHMTEVVRRCPHHERCSDSD</Hsp_midline>
108
- </Hsp>
109
- </Hit_hsps>
110
- </Hit>
111
- <Hit>
112
- <Hit_num>4</Hit_num>
113
- <Hit_id>sp|Q9WUR6|P53_CAVPO</Hit_id>
114
- <Hit_def>Cellular tumor antigen p53 OS=Cavia porcellus OX=10141 GN=TP53 PE=2 SV=1</Hit_def>
115
- <Hit_accession>Q9WUR6</Hit_accession>
116
- <Hit_len>391</Hit_len>
117
- <Hit_hsps>
118
- <Hsp>
119
- <Hsp_num>1</Hsp_num>
120
- <Hsp_bit-score>86.3</Hsp_bit-score>
121
- <Hsp_score>212</Hsp_score>
122
- <Hsp_evalue>7.5e-17</Hsp_evalue>
123
- <Hsp_query-from>1</Hsp_query-from>
124
- <Hsp_query-to>124</Hsp_query-to>
125
- <Hsp_hit-from>144</Hsp_hit-from>
126
- <Hsp_hit-to>184</Hsp_hit-to>
127
- <Hsp_query-frame>1</Hsp_query-frame>
128
- <Hsp_hit-frame>0</Hsp_hit-frame>
129
- <Hsp_identity>37</Hsp_identity>
130
- <Hsp_positive>40</Hsp_positive>
131
- <Hsp_gaps>0</Hsp_gaps>
132
- <Hsp_align-len>41</Hsp_align-len>
133
- <Hsp_qseq>WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD</Hsp_qseq>
134
- <Hsp_hseq>WVESPPPPGTRVRALAIYKKSQHMTEVVRRCPHHERCSDSD</Hsp_hseq>
135
- <Hsp_midline>WV+S PPPGTRVRA+AIYK+SQHMTEVVRRCPHHERCSDSD</Hsp_midline>
136
- </Hsp>
137
- </Hit_hsps>
138
- </Hit>
139
- <Hit>
140
- <Hit_num>5</Hit_num>
141
- <Hit_id>sp|P10361|P53_RAT</Hit_id>
142
- <Hit_def>Cellular tumor antigen p53 OS=Rattus norvegicus OX=10116 GN=Tp53 PE=1 SV=1</Hit_def>
143
- <Hit_accession>P10361</Hit_accession>
144
- <Hit_len>391</Hit_len>
145
- <Hit_hsps>
146
- <Hsp>
147
- <Hsp_num>1</Hsp_num>
148
- <Hsp_bit-score>85.9</Hsp_bit-score>
149
- <Hsp_score>211</Hsp_score>
150
- <Hsp_evalue>9.8e-17</Hsp_evalue>
151
- <Hsp_query-from>1</Hsp_query-from>
152
- <Hsp_query-to>124</Hsp_query-to>
153
- <Hsp_hit-from>144</Hsp_hit-from>
154
- <Hsp_hit-to>184</Hsp_hit-to>
155
- <Hsp_query-frame>1</Hsp_query-frame>
156
- <Hsp_hit-frame>0</Hsp_hit-frame>
157
- <Hsp_identity>37</Hsp_identity>
158
- <Hsp_positive>39</Hsp_positive>
159
- <Hsp_gaps>0</Hsp_gaps>
160
- <Hsp_align-len>41</Hsp_align-len>
161
- <Hsp_qseq>WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD</Hsp_qseq>
162
- <Hsp_hseq>WVTSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDGD</Hsp_hseq>
163
- <Hsp_midline>WV STPPPGTRVRA+AIYK+SQHMTEVVRRCPHHERCSD D</Hsp_midline>
164
- </Hsp>
165
- </Hit_hsps>
166
- </Hit>
167
- <Hit>
168
- <Hit_num>6</Hit_num>
169
- <Hit_id>sp|P02340|P53_MOUSE</Hit_id>
170
- <Hit_def>Cellular tumor antigen p53 OS=Mus musculus OX=10090 GN=Tp53 PE=1 SV=4</Hit_def>
171
- <Hit_accession>P02340</Hit_accession>
172
- <Hit_len>390</Hit_len>
173
- <Hit_hsps>
174
- <Hsp>
175
- <Hsp_num>1</Hsp_num>
176
- <Hsp_bit-score>80.5</Hsp_bit-score>
177
- <Hsp_score>197</Hsp_score>
178
- <Hsp_evalue>4.1e-15</Hsp_evalue>
179
- <Hsp_query-from>1</Hsp_query-from>
180
- <Hsp_query-to>124</Hsp_query-to>
181
- <Hsp_hit-from>143</Hsp_hit-from>
182
- <Hsp_hit-to>183</Hsp_hit-to>
183
- <Hsp_query-frame>1</Hsp_query-frame>
184
- <Hsp_hit-frame>0</Hsp_hit-frame>
185
- <Hsp_identity>34</Hsp_identity>
186
- <Hsp_positive>38</Hsp_positive>
187
- <Hsp_gaps>0</Hsp_gaps>
188
- <Hsp_align-len>41</Hsp_align-len>
189
- <Hsp_qseq>WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD</Hsp_qseq>
190
- <Hsp_hseq>WVSATPPAGSRVRAMAIYKKSQHMTEVVRRCPHHERCSDGD</Hsp_hseq>
191
- <Hsp_midline>WV +TPP G+RVRA+AIYK+SQHMTEVVRRCPHHERCSD D</Hsp_midline>
192
- </Hsp>
193
- </Hit_hsps>
194
- </Hit>
195
- <Hit>
196
- <Hit_num>7</Hit_num>
197
- <Hit_id>sp|Q8SPZ3|P53_DELLE</Hit_id>
198
- <Hit_def>Cellular tumor antigen p53 OS=Delphinapterus leucas OX=9749 GN=TP53 PE=2 SV=1</Hit_def>
199
- <Hit_accession>Q8SPZ3</Hit_accession>
200
- <Hit_len>387</Hit_len>
201
- <Hit_hsps>
202
- <Hsp>
203
- <Hsp_num>1</Hsp_num>
204
- <Hsp_bit-score>78.2</Hsp_bit-score>
205
- <Hsp_score>191</Hsp_score>
206
- <Hsp_evalue>2.0e-14</Hsp_evalue>
207
- <Hsp_query-from>1</Hsp_query-from>
208
- <Hsp_query-to>118</Hsp_query-to>
209
- <Hsp_hit-from>139</Hsp_hit-from>
210
- <Hsp_hit-to>177</Hsp_hit-to>
211
- <Hsp_query-frame>1</Hsp_query-frame>
212
- <Hsp_hit-frame>0</Hsp_hit-frame>
213
- <Hsp_identity>33</Hsp_identity>
214
- <Hsp_positive>37</Hsp_positive>
215
- <Hsp_gaps>0</Hsp_gaps>
216
- <Hsp_align-len>39</Hsp_align-len>
217
- <Hsp_qseq>WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSD</Hsp_qseq>
218
- <Hsp_hseq>WVSSPPPPGTRVRAMAIYKKSEYMTEVVRRCPHHERCSD</Hsp_hseq>
219
- <Hsp_midline>WV S PPPGTRVRA+AIYK+S++MTEVVRRCPHHERCSD</Hsp_midline>
220
- </Hsp>
221
- </Hit_hsps>
222
- </Hit>
223
- <Hit>
224
- <Hit_num>8</Hit_num>
225
- <Hit_id>sp|P67939|P53_BOVIN</Hit_id>
226
- <Hit_def>Cellular tumor antigen p53 OS=Bos taurus OX=9913 GN=TP53 PE=2 SV=1</Hit_def>
227
- <Hit_accession>P67939</Hit_accession>
228
- <Hit_len>386</Hit_len>
229
- <Hit_hsps>
230
- <Hsp>
231
- <Hsp_num>1</Hsp_num>
232
- <Hsp_bit-score>76.6</Hsp_bit-score>
233
- <Hsp_score>187</Hsp_score>
234
- <Hsp_evalue>5.9e-14</Hsp_evalue>
235
- <Hsp_query-from>1</Hsp_query-from>
236
- <Hsp_query-to>118</Hsp_query-to>
237
- <Hsp_hit-from>138</Hsp_hit-from>
238
- <Hsp_hit-to>176</Hsp_hit-to>
239
- <Hsp_query-frame>1</Hsp_query-frame>
240
- <Hsp_hit-frame>0</Hsp_hit-frame>
241
- <Hsp_identity>33</Hsp_identity>
242
- <Hsp_positive>36</Hsp_positive>
243
- <Hsp_gaps>0</Hsp_gaps>
244
- <Hsp_align-len>39</Hsp_align-len>
245
- <Hsp_qseq>WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSD</Hsp_qseq>
246
- <Hsp_hseq>WVDSPPPPGTRVRAMAIYKKLEHMTEVVRRCPHHERSSD</Hsp_hseq>
247
- <Hsp_midline>WVDS PPPGTRVRA+AIYK+ +HMTEVVRRCPHHER SD</Hsp_midline>
248
- </Hsp>
249
- </Hit_hsps>
250
- </Hit>
251
- <Hit>
252
- <Hit_num>9</Hit_num>
253
- <Hit_id>sp|Q00366|P53_MESAU</Hit_id>
254
- <Hit_def>Cellular tumor antigen p53 OS=Mesocricetus auratus OX=10036 GN=TP53 PE=2 SV=1</Hit_def>
255
- <Hit_accession>Q00366</Hit_accession>
256
- <Hit_len>396</Hit_len>
257
- <Hit_hsps>
258
- <Hsp>
259
- <Hsp_num>1</Hsp_num>
260
- <Hsp_bit-score>76.3</Hsp_bit-score>
261
- <Hsp_score>186</Hsp_score>
262
- <Hsp_evalue>7.8e-14</Hsp_evalue>
263
- <Hsp_query-from>1</Hsp_query-from>
264
- <Hsp_query-to>124</Hsp_query-to>
265
- <Hsp_hit-from>149</Hsp_hit-from>
266
- <Hsp_hit-to>189</Hsp_hit-to>
267
- <Hsp_query-frame>1</Hsp_query-frame>
268
- <Hsp_hit-frame>0</Hsp_hit-frame>
269
- <Hsp_identity>33</Hsp_identity>
270
- <Hsp_positive>37</Hsp_positive>
271
- <Hsp_gaps>0</Hsp_gaps>
272
- <Hsp_align-len>41</Hsp_align-len>
273
- <Hsp_qseq>WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD</Hsp_qseq>
274
- <Hsp_hseq>WVSSTPPPGTRVRAMAIYKKLQYMTEVVRRCPHHERSSEGD</Hsp_hseq>
275
- <Hsp_midline>WV STPPPGTRVRA+AIYK+ Q+MTEVVRRCPHHER S+ D</Hsp_midline>
276
- </Hsp>
277
- </Hit_hsps>
278
- </Hit>
279
- <Hit>
280
- <Hit_num>10</Hit_num>
281
- <Hit_id>sp|Q9TUB2|P53_PIG</Hit_id>
282
- <Hit_def>Cellular tumor antigen p53 OS=Sus scrofa OX=9823 GN=TP53 PE=2 SV=1</Hit_def>
283
- <Hit_accession>Q9TUB2</Hit_accession>
284
- <Hit_len>386</Hit_len>
285
- <Hit_hsps>
286
- <Hsp>
287
- <Hsp_num>1</Hsp_num>
288
- <Hsp_bit-score>74.3</Hsp_bit-score>
289
- <Hsp_score>181</Hsp_score>
290
- <Hsp_evalue>3.0e-13</Hsp_evalue>
291
- <Hsp_query-from>1</Hsp_query-from>
292
- <Hsp_query-to>118</Hsp_query-to>
293
- <Hsp_hit-from>138</Hsp_hit-from>
294
- <Hsp_hit-to>176</Hsp_hit-to>
295
- <Hsp_query-frame>1</Hsp_query-frame>
296
- <Hsp_hit-frame>0</Hsp_hit-frame>
297
- <Hsp_identity>32</Hsp_identity>
298
- <Hsp_positive>36</Hsp_positive>
299
- <Hsp_gaps>0</Hsp_gaps>
300
- <Hsp_align-len>39</Hsp_align-len>
301
- <Hsp_qseq>WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSD</Hsp_qseq>
302
- <Hsp_hseq>WVSSPPPPGTRVRAMAIYKKSEYMTEVVRRCPHHERSSD</Hsp_hseq>
303
- <Hsp_midline>WV S PPPGTRVRA+AIYK+S++MTEVVRRCPHHER SD</Hsp_midline>
304
- </Hsp>
305
- </Hit_hsps>
306
- </Hit>
307
- <Hit>
308
- <Hit_num>11</Hit_num>
309
- <Hit_id>sp|P79892|P53_HORSE</Hit_id>
310
- <Hit_def>Cellular tumor antigen p53 (Fragment) OS=Equus caballus OX=9796 GN=TP53 PE=2 SV=2</Hit_def>
311
- <Hit_accession>P79892</Hit_accession>
312
- <Hit_len>280</Hit_len>
313
- <Hit_hsps>
314
- <Hsp>
315
- <Hsp_num>1</Hsp_num>
316
- <Hsp_bit-score>73.9</Hsp_bit-score>
317
- <Hsp_score>180</Hsp_score>
318
- <Hsp_evalue>3.9e-13</Hsp_evalue>
319
- <Hsp_query-from>4</Hsp_query-from>
320
- <Hsp_query-to>121</Hsp_query-to>
321
- <Hsp_hit-from>97</Hsp_hit-from>
322
- <Hsp_hit-to>135</Hsp_hit-to>
323
- <Hsp_query-frame>1</Hsp_query-frame>
324
- <Hsp_hit-frame>0</Hsp_hit-frame>
325
- <Hsp_identity>33</Hsp_identity>
326
- <Hsp_positive>36</Hsp_positive>
327
- <Hsp_gaps>0</Hsp_gaps>
328
- <Hsp_align-len>39</Hsp_align-len>
329
- <Hsp_qseq>VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDS</Hsp_qseq>
330
- <Hsp_hseq>VSSPPPPGTRVRAMAIYKKSEFMTEVVRRCPHHERCSDS</Hsp_hseq>
331
- <Hsp_midline>V S PPPGTRVRA+AIYK+S+ MTEVVRRCPHHERCSDS</Hsp_midline>
332
- </Hsp>
333
- </Hit_hsps>
334
- </Hit>
335
- <Hit>
336
- <Hit_num>12</Hit_num>
337
- <Hit_id>sp|P41685|P53_FELCA</Hit_id>
338
- <Hit_def>Cellular tumor antigen p53 OS=Felis catus OX=9685 GN=TP53 PE=2 SV=1</Hit_def>
339
- <Hit_accession>P41685</Hit_accession>
340
- <Hit_len>386</Hit_len>
341
- <Hit_hsps>
342
- <Hsp>
343
- <Hsp_num>1</Hsp_num>
344
- <Hsp_bit-score>72.8</Hsp_bit-score>
345
- <Hsp_score>177</Hsp_score>
346
- <Hsp_evalue>8.6e-13</Hsp_evalue>
347
- <Hsp_query-from>1</Hsp_query-from>
348
- <Hsp_query-to>121</Hsp_query-to>
349
- <Hsp_hit-from>138</Hsp_hit-from>
350
- <Hsp_hit-to>177</Hsp_hit-to>
351
- <Hsp_query-frame>1</Hsp_query-frame>
352
- <Hsp_hit-frame>0</Hsp_hit-frame>
353
- <Hsp_identity>32</Hsp_identity>
354
- <Hsp_positive>35</Hsp_positive>
355
- <Hsp_gaps>0</Hsp_gaps>
356
- <Hsp_align-len>40</Hsp_align-len>
357
- <Hsp_qseq>WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDS</Hsp_qseq>
358
- <Hsp_hseq>WVRSPPPPGTCVRAMAIYKKSEFMTEVVRRCPHHERCPDS</Hsp_hseq>
359
- <Hsp_midline>WV S PPPGT VRA+AIYK+S+ MTEVVRRCPHHERC DS</Hsp_midline>
360
- </Hsp>
361
- </Hit_hsps>
362
- </Hit>
363
- <Hit>
364
- <Hit_num>13</Hit_num>
365
- <Hit_id>sp|P51664|P53_SHEEP</Hit_id>
366
- <Hit_def>Cellular tumor antigen p53 OS=Ovis aries OX=9940 GN=TP53 PE=2 SV=1</Hit_def>
367
- <Hit_accession>P51664</Hit_accession>
368
- <Hit_len>382</Hit_len>
369
- <Hit_hsps>
370
- <Hsp>
371
- <Hsp_num>1</Hsp_num>
372
- <Hsp_bit-score>72.8</Hsp_bit-score>
373
- <Hsp_score>177</Hsp_score>
374
- <Hsp_evalue>8.6e-13</Hsp_evalue>
375
- <Hsp_query-from>1</Hsp_query-from>
376
- <Hsp_query-to>118</Hsp_query-to>
377
- <Hsp_hit-from>134</Hsp_hit-from>
378
- <Hsp_hit-to>172</Hsp_hit-to>
379
- <Hsp_query-frame>1</Hsp_query-frame>
380
- <Hsp_hit-frame>0</Hsp_hit-frame>
381
- <Hsp_identity>32</Hsp_identity>
382
- <Hsp_positive>35</Hsp_positive>
383
- <Hsp_gaps>0</Hsp_gaps>
384
- <Hsp_align-len>39</Hsp_align-len>
385
- <Hsp_qseq>WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSD</Hsp_qseq>
386
- <Hsp_hseq>WVDSPPPPGTRVRAMAIYKKLEHMTEVVRRSPHHERSSD</Hsp_hseq>
387
- <Hsp_midline>WVDS PPPGTRVRA+AIYK+ +HMTEVVRR PHHER SD</Hsp_midline>
388
- </Hsp>
389
- </Hit_hsps>
390
- </Hit>
391
- <Hit>
392
- <Hit_num>14</Hit_num>
393
- <Hit_id>sp|Q29537|P53_CANLF</Hit_id>
394
- <Hit_def>Cellular tumor antigen p53 OS=Canis lupus familiaris OX=9615 GN=TP53 PE=2 SV=2</Hit_def>
395
- <Hit_accession>Q29537</Hit_accession>
396
- <Hit_len>381</Hit_len>
397
- <Hit_hsps>
398
- <Hsp>
399
- <Hsp_num>1</Hsp_num>
400
- <Hsp_bit-score>71.6</Hsp_bit-score>
401
- <Hsp_score>174</Hsp_score>
402
- <Hsp_evalue>1.9e-12</Hsp_evalue>
403
- <Hsp_query-from>1</Hsp_query-from>
404
- <Hsp_query-to>121</Hsp_query-to>
405
- <Hsp_hit-from>133</Hsp_hit-from>
406
- <Hsp_hit-to>172</Hsp_hit-to>
407
- <Hsp_query-frame>1</Hsp_query-frame>
408
- <Hsp_hit-frame>0</Hsp_hit-frame>
409
- <Hsp_identity>31</Hsp_identity>
410
- <Hsp_positive>35</Hsp_positive>
411
- <Hsp_gaps>0</Hsp_gaps>
412
- <Hsp_align-len>40</Hsp_align-len>
413
- <Hsp_qseq>WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDS</Hsp_qseq>
414
- <Hsp_hseq>WVSSPPPPNTCVRAMAIYKKSEFVTEVVRRCPHHERCSDS</Hsp_hseq>
415
- <Hsp_midline>WV S PPP T VRA+AIYK+S+ +TEVVRRCPHHERCSDS</Hsp_midline>
416
- </Hsp>
417
- </Hit_hsps>
418
- </Hit>
419
- <Hit>
420
- <Hit_num>15</Hit_num>
421
- <Hit_id>sp|O93379|P53_ICTPU</Hit_id>
422
- <Hit_def>Cellular tumor antigen p53 OS=Ictalurus punctatus OX=7998 GN=tp53 PE=2 SV=1</Hit_def>
423
- <Hit_accession>O93379</Hit_accession>
424
- <Hit_len>376</Hit_len>
425
- <Hit_hsps>
426
- <Hsp>
427
- <Hsp_num>1</Hsp_num>
428
- <Hsp_bit-score>63.2</Hsp_bit-score>
429
- <Hsp_score>152</Hsp_score>
430
- <Hsp_evalue>6.8e-10</Hsp_evalue>
431
- <Hsp_query-from>4</Hsp_query-from>
432
- <Hsp_query-to>121</Hsp_query-to>
433
- <Hsp_hit-from>122</Hsp_hit-from>
434
- <Hsp_hit-to>160</Hsp_hit-to>
435
- <Hsp_query-frame>1</Hsp_query-frame>
436
- <Hsp_hit-frame>0</Hsp_hit-frame>
437
- <Hsp_identity>26</Hsp_identity>
438
- <Hsp_positive>34</Hsp_positive>
439
- <Hsp_gaps>0</Hsp_gaps>
440
- <Hsp_align-len>39</Hsp_align-len>
441
- <Hsp_qseq>VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDS</Hsp_qseq>
442
- <Hsp_hseq>VSSSPPPGSVLRATAVYKRSEHVAEVVRRCPHHERSNDS</Hsp_hseq>
443
- <Hsp_midline>V S+PPPG+ +RA A+YK+S+H+ EVVRRCPHHER +DS</Hsp_midline>
444
- </Hsp>
445
- </Hit_hsps>
446
- </Hit>
447
- <Hit>
448
- <Hit_num>16</Hit_num>
449
- <Hit_id>sp|P10360|P53_CHICK</Hit_id>
450
- <Hit_def>Cellular tumor antigen p53 OS=Gallus gallus OX=9031 GN=TP53 PE=1 SV=1</Hit_def>
451
- <Hit_accession>P10360</Hit_accession>
452
- <Hit_len>367</Hit_len>
453
- <Hit_hsps>
454
- <Hsp>
455
- <Hsp_num>1</Hsp_num>
456
- <Hsp_bit-score>62.4</Hsp_bit-score>
457
- <Hsp_score>150</Hsp_score>
458
- <Hsp_evalue>1.2e-09</Hsp_evalue>
459
- <Hsp_query-from>4</Hsp_query-from>
460
- <Hsp_query-to>112</Hsp_query-to>
461
- <Hsp_hit-from>132</Hsp_hit-from>
462
- <Hsp_hit-to>167</Hsp_hit-to>
463
- <Hsp_query-frame>1</Hsp_query-frame>
464
- <Hsp_hit-frame>0</Hsp_hit-frame>
465
- <Hsp_identity>25</Hsp_identity>
466
- <Hsp_positive>31</Hsp_positive>
467
- <Hsp_gaps>0</Hsp_gaps>
468
- <Hsp_align-len>36</Hsp_align-len>
469
- <Hsp_qseq>VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERC</Hsp_qseq>
470
- <Hsp_hseq>VGVAPPPGSSLRAVAVYKKSEHVAEVVRRCPHHERC</Hsp_hseq>
471
- <Hsp_midline>V PPPG+ +RAVA+YK+S+H+ EVVRRCPHHERC</Hsp_midline>
472
- </Hsp>
473
- </Hit_hsps>
474
- </Hit>
475
- <Hit>
476
- <Hit_num>17</Hit_num>
477
- <Hit_id>sp|P79734|P53_DANRE</Hit_id>
478
- <Hit_def>Cellular tumor antigen p53 OS=Danio rerio OX=7955 GN=tp53 PE=1 SV=1</Hit_def>
479
- <Hit_accession>P79734</Hit_accession>
480
- <Hit_len>373</Hit_len>
481
- <Hit_hsps>
482
- <Hsp>
483
- <Hsp_num>1</Hsp_num>
484
- <Hsp_bit-score>61.2</Hsp_bit-score>
485
- <Hsp_score>147</Hsp_score>
486
- <Hsp_evalue>2.6e-09</Hsp_evalue>
487
- <Hsp_query-from>4</Hsp_query-from>
488
- <Hsp_query-to>124</Hsp_query-to>
489
- <Hsp_hit-from>115</Hsp_hit-from>
490
- <Hsp_hit-to>154</Hsp_hit-to>
491
- <Hsp_query-frame>1</Hsp_query-frame>
492
- <Hsp_hit-frame>0</Hsp_hit-frame>
493
- <Hsp_identity>27</Hsp_identity>
494
- <Hsp_positive>31</Hsp_positive>
495
- <Hsp_gaps>0</Hsp_gaps>
496
- <Hsp_align-len>40</Hsp_align-len>
497
- <Hsp_qseq>VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD</Hsp_qseq>
498
- <Hsp_hseq>VDVAPPQGSVVRATAIYKKSEHVAEVVRRCPHHERTPDGD</Hsp_hseq>
499
- <Hsp_midline>VD PP G+ VRA AIYK+S+H+ EVVRRCPHHER D D</Hsp_midline>
500
- </Hsp>
501
- </Hit_hsps>
502
- </Hit>
503
- <Hit>
504
- <Hit_num>18</Hit_num>
505
- <Hit_id>sp|O15350|P73_HUMAN</Hit_id>
506
- <Hit_def>Tumor protein p73 OS=Homo sapiens OX=9606 GN=TP73 PE=1 SV=1</Hit_def>
507
- <Hit_accession>O15350</Hit_accession>
508
- <Hit_len>636</Hit_len>
509
- <Hit_hsps>
510
- <Hsp>
511
- <Hsp_num>1</Hsp_num>
512
- <Hsp_bit-score>53.1</Hsp_bit-score>
513
- <Hsp_score>126</Hsp_score>
514
- <Hsp_evalue>7.0e-07</Hsp_evalue>
515
- <Hsp_query-from>4</Hsp_query-from>
516
- <Hsp_query-to>106</Hsp_query-to>
517
- <Hsp_hit-from>165</Hsp_hit-from>
518
- <Hsp_hit-to>198</Hsp_hit-to>
519
- <Hsp_query-frame>1</Hsp_query-frame>
520
- <Hsp_hit-frame>0</Hsp_hit-frame>
521
- <Hsp_identity>19</Hsp_identity>
522
- <Hsp_positive>30</Hsp_positive>
523
- <Hsp_gaps>0</Hsp_gaps>
524
- <Hsp_align-len>34</Hsp_align-len>
525
- <Hsp_qseq>VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHE</Hsp_qseq>
526
- <Hsp_hseq>VSTPPPPGTAIRAMPVYKKAEHVTDVVKRCPNHE</Hsp_hseq>
527
- <Hsp_midline>V + PPPGT +RA+ +YK+++H+T+VV+RCP+HE</Hsp_midline>
528
- </Hsp>
529
- </Hit_hsps>
530
- </Hit>
531
- <Hit>
532
- <Hit_num>19</Hit_num>
533
- <Hit_id>sp|Q9JJP2|P73_MOUSE</Hit_id>
534
- <Hit_def>Tumor protein p73 OS=Mus musculus OX=10090 GN=Tp73 PE=1 SV=1</Hit_def>
535
- <Hit_accession>Q9JJP2</Hit_accession>
536
- <Hit_len>631</Hit_len>
537
- <Hit_hsps>
538
- <Hsp>
539
- <Hsp_num>1</Hsp_num>
540
- <Hsp_bit-score>52.8</Hsp_bit-score>
541
- <Hsp_score>125</Hsp_score>
542
- <Hsp_evalue>9.2e-07</Hsp_evalue>
543
- <Hsp_query-from>4</Hsp_query-from>
544
- <Hsp_query-to>106</Hsp_query-to>
545
- <Hsp_hit-from>157</Hsp_hit-from>
546
- <Hsp_hit-to>190</Hsp_hit-to>
547
- <Hsp_query-frame>1</Hsp_query-frame>
548
- <Hsp_hit-frame>0</Hsp_hit-frame>
549
- <Hsp_identity>18</Hsp_identity>
550
- <Hsp_positive>30</Hsp_positive>
551
- <Hsp_gaps>0</Hsp_gaps>
552
- <Hsp_align-len>34</Hsp_align-len>
553
- <Hsp_qseq>VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHE</Hsp_qseq>
554
- <Hsp_hseq>VSTPPPPGTAIRAMPVYKKAEHVTDIVKRCPNHE</Hsp_hseq>
555
- <Hsp_midline>V + PPPGT +RA+ +YK+++H+T++V+RCP+HE</Hsp_midline>
556
- </Hsp>
557
- </Hit_hsps>
558
- </Hit>
559
- <Hit>
560
- <Hit_num>20</Hit_num>
561
- <Hit_id>sp|P79820|P53_ORYLA</Hit_id>
562
- <Hit_def>Cellular tumor antigen p53 OS=Oryzias latipes OX=8090 GN=tp53 PE=2 SV=2</Hit_def>
563
- <Hit_accession>P79820</Hit_accession>
564
- <Hit_len>352</Hit_len>
565
- <Hit_hsps>
566
- <Hsp>
567
- <Hsp_num>1</Hsp_num>
568
- <Hsp_bit-score>48.5</Hsp_bit-score>
569
- <Hsp_score>114</Hsp_score>
570
- <Hsp_evalue>1.7e-05</Hsp_evalue>
571
- <Hsp_query-from>4</Hsp_query-from>
572
- <Hsp_query-to>106</Hsp_query-to>
573
- <Hsp_hit-from>132</Hsp_hit-from>
574
- <Hsp_hit-to>165</Hsp_hit-to>
575
- <Hsp_query-frame>1</Hsp_query-frame>
576
- <Hsp_hit-frame>0</Hsp_hit-frame>
577
- <Hsp_identity>18</Hsp_identity>
578
- <Hsp_positive>26</Hsp_positive>
579
- <Hsp_gaps>0</Hsp_gaps>
580
- <Hsp_align-len>34</Hsp_align-len>
581
- <Hsp_qseq>VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHE</Hsp_qseq>
582
- <Hsp_hseq>VSKEPPKGAILRATAVYKKTEHVADVVRRCPHHQ</Hsp_hseq>
583
- <Hsp_midline>V PP G +RA A+YK+++H+ +VVRRCPHH+</Hsp_midline>
584
- </Hsp>
585
- </Hit_hsps>
586
- </Hit>
587
- <Hit>
588
- <Hit_num>21</Hit_num>
589
- <Hit_id>sp|Q92143|P53_XIPMA</Hit_id>
590
- <Hit_def>Cellular tumor antigen p53 OS=Xiphophorus maculatus OX=8083 GN=tp53 PE=2 SV=2</Hit_def>
591
- <Hit_accession>Q92143</Hit_accession>
592
- <Hit_len>342</Hit_len>
593
- <Hit_hsps>
594
- <Hsp>
595
- <Hsp_num>1</Hsp_num>
596
- <Hsp_bit-score>48.1</Hsp_bit-score>
597
- <Hsp_score>113</Hsp_score>
598
- <Hsp_evalue>2.3e-05</Hsp_evalue>
599
- <Hsp_query-from>4</Hsp_query-from>
600
- <Hsp_query-to>124</Hsp_query-to>
601
- <Hsp_hit-from>113</Hsp_hit-from>
602
- <Hsp_hit-to>152</Hsp_hit-to>
603
- <Hsp_query-frame>1</Hsp_query-frame>
604
- <Hsp_hit-frame>0</Hsp_hit-frame>
605
- <Hsp_identity>20</Hsp_identity>
606
- <Hsp_positive>28</Hsp_positive>
607
- <Hsp_gaps>0</Hsp_gaps>
608
- <Hsp_align-len>40</Hsp_align-len>
609
- <Hsp_qseq>VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD</Hsp_qseq>
610
- <Hsp_hseq>VKEEPPQGAVIRATAVYKKTEHVGEVVKRCPHHQSEDLSD</Hsp_hseq>
611
- <Hsp_midline>V PP G +RA A+YK+++H+ EVV+RCPHH+ SD</Hsp_midline>
612
- </Hsp>
613
- </Hit_hsps>
614
- </Hit>
615
- <Hit>
616
- <Hit_num>22</Hit_num>
617
- <Hit_id>sp|Q9H3D4|P63_HUMAN</Hit_id>
618
- <Hit_def>Tumor protein 63 OS=Homo sapiens OX=9606 GN=TP63 PE=1 SV=1</Hit_def>
619
- <Hit_accession>Q9H3D4</Hit_accession>
620
- <Hit_len>680</Hit_len>
621
- <Hit_hsps>
622
- <Hsp>
623
- <Hsp_num>1</Hsp_num>
624
- <Hsp_bit-score>47.4</Hsp_bit-score>
625
- <Hsp_score>111</Hsp_score>
626
- <Hsp_evalue>3.9e-05</Hsp_evalue>
627
- <Hsp_query-from>4</Hsp_query-from>
628
- <Hsp_query-to>106</Hsp_query-to>
629
- <Hsp_hit-from>215</Hsp_hit-from>
630
- <Hsp_hit-to>248</Hsp_hit-to>
631
- <Hsp_query-frame>1</Hsp_query-frame>
632
- <Hsp_hit-frame>0</Hsp_hit-frame>
633
- <Hsp_identity>18</Hsp_identity>
634
- <Hsp_positive>28</Hsp_positive>
635
- <Hsp_gaps>0</Hsp_gaps>
636
- <Hsp_align-len>34</Hsp_align-len>
637
- <Hsp_qseq>VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHE</Hsp_qseq>
638
- <Hsp_hseq>VMTPPPQGAVIRAMPVYKKAEHVTEVVKRCPNHE</Hsp_hseq>
639
- <Hsp_midline>V + PP G +RA+ +YK+++H+TEVV+RCP+HE</Hsp_midline>
640
- </Hsp>
641
- </Hit_hsps>
642
- </Hit>
643
- <Hit>
644
- <Hit_num>23</Hit_num>
645
- <Hit_id>sp|Q9JJP6|P63_RAT</Hit_id>
646
- <Hit_def>Tumor protein 63 OS=Rattus norvegicus OX=10116 GN=Tp63 PE=2 SV=1</Hit_def>
647
- <Hit_accession>Q9JJP6</Hit_accession>
648
- <Hit_len>680</Hit_len>
649
- <Hit_hsps>
650
- <Hsp>
651
- <Hsp_num>1</Hsp_num>
652
- <Hsp_bit-score>47.4</Hsp_bit-score>
653
- <Hsp_score>111</Hsp_score>
654
- <Hsp_evalue>3.9e-05</Hsp_evalue>
655
- <Hsp_query-from>4</Hsp_query-from>
656
- <Hsp_query-to>106</Hsp_query-to>
657
- <Hsp_hit-from>215</Hsp_hit-from>
658
- <Hsp_hit-to>248</Hsp_hit-to>
659
- <Hsp_query-frame>1</Hsp_query-frame>
660
- <Hsp_hit-frame>0</Hsp_hit-frame>
661
- <Hsp_identity>18</Hsp_identity>
662
- <Hsp_positive>28</Hsp_positive>
663
- <Hsp_gaps>0</Hsp_gaps>
664
- <Hsp_align-len>34</Hsp_align-len>
665
- <Hsp_qseq>VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHE</Hsp_qseq>
666
- <Hsp_hseq>VMTPPPQGAVIRAMPVYKKAEHVTEVVKRCPNHE</Hsp_hseq>
667
- <Hsp_midline>V + PP G +RA+ +YK+++H+TEVV+RCP+HE</Hsp_midline>
668
- </Hsp>
669
- </Hit_hsps>
670
- </Hit>
671
- <Hit>
672
- <Hit_num>24</Hit_num>
673
- <Hit_id>sp|O88898|P63_MOUSE</Hit_id>
674
- <Hit_def>Tumor protein 63 OS=Mus musculus OX=10090 GN=Tp63 PE=1 SV=1</Hit_def>
675
- <Hit_accession>O88898</Hit_accession>
676
- <Hit_len>680</Hit_len>
677
- <Hit_hsps>
678
- <Hsp>
679
- <Hsp_num>1</Hsp_num>
680
- <Hsp_bit-score>47.4</Hsp_bit-score>
681
- <Hsp_score>111</Hsp_score>
682
- <Hsp_evalue>3.9e-05</Hsp_evalue>
683
- <Hsp_query-from>4</Hsp_query-from>
684
- <Hsp_query-to>106</Hsp_query-to>
685
- <Hsp_hit-from>215</Hsp_hit-from>
686
- <Hsp_hit-to>248</Hsp_hit-to>
687
- <Hsp_query-frame>1</Hsp_query-frame>
688
- <Hsp_hit-frame>0</Hsp_hit-frame>
689
- <Hsp_identity>18</Hsp_identity>
690
- <Hsp_positive>28</Hsp_positive>
691
- <Hsp_gaps>0</Hsp_gaps>
692
- <Hsp_align-len>34</Hsp_align-len>
693
- <Hsp_qseq>VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHE</Hsp_qseq>
694
- <Hsp_hseq>VMTPPPQGAVIRAMPVYKKAEHVTEVVKRCPNHE</Hsp_hseq>
695
- <Hsp_midline>V + PP G +RA+ +YK+++H+TEVV+RCP+HE</Hsp_midline>
696
- </Hsp>
697
- </Hit_hsps>
698
- </Hit>
699
- </Iteration_hits>
700
- <Iteration_stat>
701
- <Statistics>
702
- <Statistics_db-num>459708</Statistics_db-num>
703
- <Statistics_db-len>170771147</Statistics_db-len>
704
- <Statistics_hsp-len>0</Statistics_hsp-len>
705
- <Statistics_eff-space>0</Statistics_eff-space>
706
- <Statistics_kappa>0.041000</Statistics_kappa>
707
- <Statistics_lambda>0.267000</Statistics_lambda>
708
- <Statistics_entropy>0</Statistics_entropy>
709
- </Statistics>
710
- </Iteration_stat>
711
- </Iteration>
712
- <Iteration>
713
- <Iteration_iter-num>2</Iteration_iter-num>
714
- <Iteration_query-ID>Query_2</Iteration_query-ID>
715
- <Iteration_query-def>NM_001861.5 Homo sapiens cytochrome c oxidase subunit 4I1 (COX4I1), transcript variant 1, mRNA</Iteration_query-def>
716
- <Iteration_query-len>749</Iteration_query-len>
717
- <Iteration_hits>
718
- <Hit>
719
- <Hit_num>1</Hit_num>
720
- <Hit_id>sp|P13073|COX41_HUMAN</Hit_id>
721
- <Hit_def>Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Homo sapiens OX=9606 GN=COX4I1 PE=1 SV=1</Hit_def>
722
- <Hit_accession>P13073</Hit_accession>
723
- <Hit_len>169</Hit_len>
724
- <Hit_hsps>
725
- <Hsp>
726
- <Hsp_num>1</Hsp_num>
727
- <Hsp_bit-score>344.0</Hsp_bit-score>
728
- <Hsp_score>881</Hsp_score>
729
- <Hsp_evalue>1.2e-93</Hsp_evalue>
730
- <Hsp_query-from>60</Hsp_query-from>
731
- <Hsp_query-to>567</Hsp_query-to>
732
- <Hsp_hit-from>1</Hsp_hit-from>
733
- <Hsp_hit-to>169</Hsp_hit-to>
734
- <Hsp_query-frame>3</Hsp_query-frame>
735
- <Hsp_hit-frame>0</Hsp_hit-frame>
736
- <Hsp_identity>169</Hsp_identity>
737
- <Hsp_positive>169</Hsp_positive>
738
- <Hsp_gaps>0</Hsp_gaps>
739
- <Hsp_align-len>169</Hsp_align-len>
740
- <Hsp_qseq>MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK</Hsp_qseq>
741
- <Hsp_hseq>MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK</Hsp_hseq>
742
- <Hsp_midline>MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK</Hsp_midline>
743
- </Hsp>
744
- </Hit_hsps>
745
- </Hit>
746
- <Hit>
747
- <Hit_num>2</Hit_num>
748
- <Hit_id>sp|P00423|COX41_BOVIN</Hit_id>
749
- <Hit_def>Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Bos taurus OX=9913 GN=COX4I1 PE=1 SV=1</Hit_def>
750
- <Hit_accession>P00423</Hit_accession>
751
- <Hit_len>169</Hit_len>
752
- <Hit_hsps>
753
- <Hsp>
754
- <Hsp_num>1</Hsp_num>
755
- <Hsp_bit-score>300.8</Hsp_bit-score>
756
- <Hsp_score>769</Hsp_score>
757
- <Hsp_evalue>1.2e-80</Hsp_evalue>
758
- <Hsp_query-from>60</Hsp_query-from>
759
- <Hsp_query-to>567</Hsp_query-to>
760
- <Hsp_hit-from>1</Hsp_hit-from>
761
- <Hsp_hit-to>169</Hsp_hit-to>
762
- <Hsp_query-frame>3</Hsp_query-frame>
763
- <Hsp_hit-frame>0</Hsp_hit-frame>
764
- <Hsp_identity>140</Hsp_identity>
765
- <Hsp_positive>163</Hsp_positive>
766
- <Hsp_gaps>0</Hsp_gaps>
767
- <Hsp_align-len>169</Hsp_align-len>
768
- <Hsp_qseq>MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK</Hsp_qseq>
769
- <Hsp_hseq>MLATRVFSLIGRRAISTSVCVRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK</Hsp_hseq>
770
- <Hsp_midline>MLATRVFSL+G+RAISTSVCVRAH SVVKSED++LP+Y+DRRD+PLP+VAHVK+LSASQKALKEKEKASWSSLS+DEKVELYR+KFKESFAEMNR +NEWKTVVG AMFFIGFTAL+++W+KHYVYGP+P +F++EWVAKQTKRMLDMKV PIQG ++KWDY+KNEWKK</Hsp_midline>
771
- </Hsp>
772
- </Hit_hsps>
773
- </Hit>
774
- <Hit>
775
- <Hit_num>3</Hit_num>
776
- <Hit_id>sp|O46577|COX41_PANTR</Hit_id>
777
- <Hit_def>Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment) OS=Pan troglodytes OX=9598 GN=COX4I1 PE=3 SV=1</Hit_def>
778
- <Hit_accession>O46577</Hit_accession>
779
- <Hit_len>144</Hit_len>
780
- <Hit_hsps>
781
- <Hsp>
782
- <Hsp_num>1</Hsp_num>
783
- <Hsp_bit-score>298.5</Hsp_bit-score>
784
- <Hsp_score>763</Hsp_score>
785
- <Hsp_evalue>5.8e-80</Hsp_evalue>
786
- <Hsp_query-from>135</Hsp_query-from>
787
- <Hsp_query-to>567</Hsp_query-to>
788
- <Hsp_hit-from>1</Hsp_hit-from>
789
- <Hsp_hit-to>144</Hsp_hit-to>
790
- <Hsp_query-frame>3</Hsp_query-frame>
791
- <Hsp_hit-frame>0</Hsp_hit-frame>
792
- <Hsp_identity>144</Hsp_identity>
793
- <Hsp_positive>144</Hsp_positive>
794
- <Hsp_gaps>0</Hsp_gaps>
795
- <Hsp_align-len>144</Hsp_align-len>
796
- <Hsp_qseq>SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK</Hsp_qseq>
797
- <Hsp_hseq>SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK</Hsp_hseq>
798
- <Hsp_midline>SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK</Hsp_midline>
799
- </Hsp>
800
- </Hit_hsps>
801
- </Hit>
802
- <Hit>
803
- <Hit_num>4</Hit_num>
804
- <Hit_id>sp|O46578|COX41_GORGO</Hit_id>
805
- <Hit_def>Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment) OS=Gorilla gorilla gorilla OX=9595 GN=COX4I1 PE=3 SV=1</Hit_def>
806
- <Hit_accession>O46578</Hit_accession>
807
- <Hit_len>144</Hit_len>
808
- <Hit_hsps>
809
- <Hsp>
810
- <Hsp_num>1</Hsp_num>
811
- <Hsp_bit-score>296.2</Hsp_bit-score>
812
- <Hsp_score>757</Hsp_score>
813
- <Hsp_evalue>2.9e-79</Hsp_evalue>
814
- <Hsp_query-from>135</Hsp_query-from>
815
- <Hsp_query-to>567</Hsp_query-to>
816
- <Hsp_hit-from>1</Hsp_hit-from>
817
- <Hsp_hit-to>144</Hsp_hit-to>
818
- <Hsp_query-frame>3</Hsp_query-frame>
819
- <Hsp_hit-frame>0</Hsp_hit-frame>
820
- <Hsp_identity>143</Hsp_identity>
821
- <Hsp_positive>144</Hsp_positive>
822
- <Hsp_gaps>0</Hsp_gaps>
823
- <Hsp_align-len>144</Hsp_align-len>
824
- <Hsp_qseq>SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK</Hsp_qseq>
825
- <Hsp_hseq>SVVKSEDFSLPAYMDRRDYPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK</Hsp_hseq>
826
- <Hsp_midline>SVVKSEDFSLPAYMDRRD+PLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK</Hsp_midline>
827
- </Hsp>
828
- </Hit_hsps>
829
- </Hit>
830
- <Hit>
831
- <Hit_num>5</Hit_num>
832
- <Hit_id>sp|P10888|COX41_RAT</Hit_id>
833
- <Hit_def>Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Rattus norvegicus OX=10116 GN=Cox4i1 PE=1 SV=1</Hit_def>
834
- <Hit_accession>P10888</Hit_accession>
835
- <Hit_len>169</Hit_len>
836
- <Hit_hsps>
837
- <Hsp>
838
- <Hsp_num>1</Hsp_num>
839
- <Hsp_bit-score>287.3</Hsp_bit-score>
840
- <Hsp_score>734</Hsp_score>
841
- <Hsp_evalue>1.3e-76</Hsp_evalue>
842
- <Hsp_query-from>60</Hsp_query-from>
843
- <Hsp_query-to>567</Hsp_query-to>
844
- <Hsp_hit-from>1</Hsp_hit-from>
845
- <Hsp_hit-to>169</Hsp_hit-to>
846
- <Hsp_query-frame>3</Hsp_query-frame>
847
- <Hsp_hit-frame>0</Hsp_hit-frame>
848
- <Hsp_identity>135</Hsp_identity>
849
- <Hsp_positive>156</Hsp_positive>
850
- <Hsp_gaps>0</Hsp_gaps>
851
- <Hsp_align-len>169</Hsp_align-len>
852
- <Hsp_qseq>MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK</Hsp_qseq>
853
- <Hsp_hseq>MLATRALSLIGKRAISTSVCLRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKLLSASQKALKEKEKADWSSLSRDEKVQLYRIQFNESFAEMNKGTNEWKTVVGLAMFFIGFTALVLIWEKSYVYGPIPHTFDRDWVAMQTKRMLDMKVNPIQGFSAKWDYNKNEWKK</Hsp_hseq>
854
- <Hsp_midline>MLATR SL+GKRAISTSVC+RAH SVVKSED++LP+Y+DRRD+PLP+VAHVK LSASQKALKEKEKA WSSLS DEKV+LYRI+F ESFAEMN+G+NEWKTVVG AMFFIGFTALV++W+K YVYGP+P +FD++WVA QTKRMLDMKVNPIQG ++KWDY KNEWKK</Hsp_midline>
855
- </Hsp>
856
- </Hit_hsps>
857
- </Hit>
858
- <Hit>
859
- <Hit_num>6</Hit_num>
860
- <Hit_id>sp|P19783|COX41_MOUSE</Hit_id>
861
- <Hit_def>Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Mus musculus OX=10090 GN=Cox4i1 PE=1 SV=2</Hit_def>
862
- <Hit_accession>P19783</Hit_accession>
863
- <Hit_len>169</Hit_len>
864
- <Hit_hsps>
865
- <Hsp>
866
- <Hsp_num>1</Hsp_num>
867
- <Hsp_bit-score>282.0</Hsp_bit-score>
868
- <Hsp_score>720</Hsp_score>
869
- <Hsp_evalue>5.7e-75</Hsp_evalue>
870
- <Hsp_query-from>60</Hsp_query-from>
871
- <Hsp_query-to>567</Hsp_query-to>
872
- <Hsp_hit-from>1</Hsp_hit-from>
873
- <Hsp_hit-to>169</Hsp_hit-to>
874
- <Hsp_query-frame>3</Hsp_query-frame>
875
- <Hsp_hit-frame>0</Hsp_hit-frame>
876
- <Hsp_identity>132</Hsp_identity>
877
- <Hsp_positive>152</Hsp_positive>
878
- <Hsp_gaps>0</Hsp_gaps>
879
- <Hsp_align-len>169</Hsp_align-len>
880
- <Hsp_qseq>MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK</Hsp_qseq>
881
- <Hsp_hseq>MLASRALSLIGKRAISTSVCLRAHGSVVKSEDYAFPTYADRRDYPLPDVAHVTMLSASQKALKEKEKADWSSLSRDEKVQLYRIQFNESFAEMNRGTNEWKTVVGMAMFFIGFTALVLIWEKSYVYGPIPHTFDRDWVAMQTKRMLDMKANPIQGFSAKWDYDKNEWKK</Hsp_hseq>
882
- <Hsp_midline>MLA+R SL+GKRAISTSVC+RAH SVVKSED++ P Y DRRD+PLP+VAHV LSASQKALKEKEKA WSSLS DEKV+LYRI+F ESFAEMNRG+NEWKTVVG AMFFIGFTALV++W+K YVYGP+P +FD++WVA QTKRMLDMK NPIQG ++KWDY+KNEWKK</Hsp_midline>
883
- </Hsp>
884
- </Hit_hsps>
885
- </Hit>
886
- <Hit>
887
- <Hit_num>7</Hit_num>
888
- <Hit_id>sp|Q9TTT8|COX41_RABIT</Hit_id>
889
- <Hit_def>Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Oryctolagus cuniculus OX=9986 GN=COX4I1 PE=2 SV=1</Hit_def>
890
- <Hit_accession>Q9TTT8</Hit_accession>
891
- <Hit_len>169</Hit_len>
892
- <Hit_hsps>
893
- <Hsp>
894
- <Hsp_num>1</Hsp_num>
895
- <Hsp_bit-score>279.3</Hsp_bit-score>
896
- <Hsp_score>713</Hsp_score>
897
- <Hsp_evalue>3.7e-74</Hsp_evalue>
898
- <Hsp_query-from>60</Hsp_query-from>
899
- <Hsp_query-to>567</Hsp_query-to>
900
- <Hsp_hit-from>1</Hsp_hit-from>
901
- <Hsp_hit-to>169</Hsp_hit-to>
902
- <Hsp_query-frame>3</Hsp_query-frame>
903
- <Hsp_hit-frame>0</Hsp_hit-frame>
904
- <Hsp_identity>129</Hsp_identity>
905
- <Hsp_positive>151</Hsp_positive>
906
- <Hsp_gaps>0</Hsp_gaps>
907
- <Hsp_align-len>169</Hsp_align-len>
908
- <Hsp_qseq>MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK</Hsp_qseq>
909
- <Hsp_hseq>MLPTRLLSFSGSRAISTSFCLRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKQLSAGQKALKEKEKAPWGSLTRDEKVELYRIQFNESFAEMNRGTNEWKTVVGTALFFIGFTALILIWEKHYVYGPIPHTFDKEWVAMQTKRMLDMKVSPIQGFSAKWDYNKNEWRK</Hsp_hseq>
910
- <Hsp_midline>ML TR+ S G RAISTS C+RAH SVVKSED++LP+Y+DRRD+PLP+VAHVK LSA QKALKEKEKA W SL+ DEKVELYRI+F ESFAEMNRG+NEWKTVVG A+FFIGFTAL+++W+KHYVYGP+P +FDKEWVA QTKRMLDMKV+PIQG ++KWDY KNEW+K</Hsp_midline>
911
- </Hsp>
912
- </Hit_hsps>
913
- </Hit>
914
- <Hit>
915
- <Hit_num>8</Hit_num>
916
- <Hit_id>sp|Q96KJ9|COX42_HUMAN</Hit_id>
917
- <Hit_def>Cytochrome c oxidase subunit 4 isoform 2, mitochondrial OS=Homo sapiens OX=9606 GN=COX4I2 PE=1 SV=2</Hit_def>
918
- <Hit_accession>Q96KJ9</Hit_accession>
919
- <Hit_len>171</Hit_len>
920
- <Hit_hsps>
921
- <Hsp>
922
- <Hsp_num>1</Hsp_num>
923
- <Hsp_bit-score>164.5</Hsp_bit-score>
924
- <Hsp_score>415</Hsp_score>
925
- <Hsp_evalue>1.3e-39</Hsp_evalue>
926
- <Hsp_query-from>180</Hsp_query-from>
927
- <Hsp_query-to>567</Hsp_query-to>
928
- <Hsp_hit-from>43</Hsp_hit-from>
929
- <Hsp_hit-to>171</Hsp_hit-to>
930
- <Hsp_query-frame>3</Hsp_query-frame>
931
- <Hsp_hit-frame>0</Hsp_hit-frame>
932
- <Hsp_identity>78</Hsp_identity>
933
- <Hsp_positive>98</Hsp_positive>
934
- <Hsp_gaps>0</Hsp_gaps>
935
- <Hsp_align-len>129</Hsp_align-len>
936
- <Hsp_qseq>RRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK</Hsp_qseq>
937
- <Hsp_hseq>QRYYPMPEEPFCTELNAEEQALKEKEKGSWTQLTHAEKVALYRLQFNETFAEMNRRSNEWKTVMGCVFFFIGFAALVIWWQRVYVFPPKPITLTDERKAQQLQRMLDMKVNPVQGLASRWDYEKKQWKK</Hsp_hseq>
938
- <Hsp_midline>+R +P+PE L+A ++ALKEKEK SW+ L+ EKV LYR++F E+FAEMNR SNEWKTV+G FFIGF ALVI WQ+ YV+ P P + E A+Q +RMLDMKVNP+QGLAS+WDYEK +WKK</Hsp_midline>
939
- </Hsp>
940
- </Hit_hsps>
941
- </Hit>
942
- <Hit>
943
- <Hit_num>9</Hit_num>
944
- <Hit_id>sp|Q95283|COX41_PIG</Hit_id>
945
- <Hit_def>Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment) OS=Sus scrofa OX=9823 GN=COX4I1 PE=2 SV=1</Hit_def>
946
- <Hit_accession>Q95283</Hit_accession>
947
- <Hit_len>97</Hit_len>
948
- <Hit_hsps>
949
- <Hsp>
950
- <Hsp_num>1</Hsp_num>
951
- <Hsp_bit-score>160.6</Hsp_bit-score>
952
- <Hsp_score>405</Hsp_score>
953
- <Hsp_evalue>1.9e-38</Hsp_evalue>
954
- <Hsp_query-from>60</Hsp_query-from>
955
- <Hsp_query-to>351</Hsp_query-to>
956
- <Hsp_hit-from>1</Hsp_hit-from>
957
- <Hsp_hit-to>97</Hsp_hit-to>
958
- <Hsp_query-frame>3</Hsp_query-frame>
959
- <Hsp_hit-frame>0</Hsp_hit-frame>
960
- <Hsp_identity>80</Hsp_identity>
961
- <Hsp_positive>91</Hsp_positive>
962
- <Hsp_gaps>0</Hsp_gaps>
963
- <Hsp_align-len>97</Hsp_align-len>
964
- <Hsp_qseq>MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGS</Hsp_qseq>
965
- <Hsp_hseq>MLATRVFNLIGRRAISTSVCVRAHGSXVKSEDYALPVYVDRRDYPLPDVAHVKNLSASQKAXKEKEKASWSSLSMDEKVELYRLKFNESFAEMNRST</Hsp_hseq>
966
- <Hsp_midline>MLATRVF+L+G+RAISTSVCVRAH S VKSED++LP Y+DRRD+PLP+VAHVK+LSASQKA KEKEKASWSSLSMDEKVELYR+KF ESFAEMNR +</Hsp_midline>
967
- </Hsp>
968
- </Hit_hsps>
969
- </Hit>
970
- <Hit>
971
- <Hit_num>10</Hit_num>
972
- <Hit_id>sp|Q91Y94|COX42_RAT</Hit_id>
973
- <Hit_def>Cytochrome c oxidase subunit 4 isoform 2, mitochondrial OS=Rattus norvegicus OX=10116 GN=Cox4i2 PE=2 SV=1</Hit_def>
974
- <Hit_accession>Q91Y94</Hit_accession>
975
- <Hit_len>172</Hit_len>
976
- <Hit_hsps>
977
- <Hsp>
978
- <Hsp_num>1</Hsp_num>
979
- <Hsp_bit-score>159.1</Hsp_bit-score>
980
- <Hsp_score>401</Hsp_score>
981
- <Hsp_evalue>5.5e-38</Hsp_evalue>
982
- <Hsp_query-from>135</Hsp_query-from>
983
- <Hsp_query-to>567</Hsp_query-to>
984
- <Hsp_hit-from>26</Hsp_hit-from>
985
- <Hsp_hit-to>172</Hsp_hit-to>
986
- <Hsp_query-frame>3</Hsp_query-frame>
987
- <Hsp_hit-frame>0</Hsp_hit-frame>
988
- <Hsp_identity>79</Hsp_identity>
989
- <Hsp_positive>101</Hsp_positive>
990
- <Hsp_gaps>3</Hsp_gaps>
991
- <Hsp_align-len>147</Hsp_align-len>
992
- <Hsp_qseq>SVVKSEDFSLPAYMD---RRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK</Hsp_qseq>
993
- <Hsp_hseq>SAASSSQRRMTPYVDCYAQRSYPMPDEPYCTELSEEQRALKEKEKGSWAQLSQAEKVALYRLQFHETFAEMNHRSNEWKTVMGCVFFFIGFTALVIWWQRVYVFPKKVVTLTEERKAQQLQRLLDMKSNPIQGLSAHWDYEKKEWKK</Hsp_hseq>
994
- <Hsp_midline>S S + Y+D +R +P+P+ + LS Q+ALKEKEK SW+ LS EKV LYR++F E+FAEMN SNEWKTV+G FFIGFTALVI WQ+ YV+ + +E A+Q +R+LDMK NPIQGL++ WDYEK EWKK</Hsp_midline>
995
- </Hsp>
996
- </Hit_hsps>
997
- </Hit>
998
- <Hit>
999
- <Hit_num>11</Hit_num>
1000
- <Hit_id>sp|Q91W29|COX42_MOUSE</Hit_id>
1001
- <Hit_def>Cytochrome c oxidase subunit 4 isoform 2, mitochondrial OS=Mus musculus OX=10090 GN=Cox4i2 PE=1 SV=1</Hit_def>
1002
- <Hit_accession>Q91W29</Hit_accession>
1003
- <Hit_len>172</Hit_len>
1004
- <Hit_hsps>
1005
- <Hsp>
1006
- <Hsp_num>1</Hsp_num>
1007
- <Hsp_bit-score>157.1</Hsp_bit-score>
1008
- <Hsp_score>396</Hsp_score>
1009
- <Hsp_evalue>2.1e-37</Hsp_evalue>
1010
- <Hsp_query-from>180</Hsp_query-from>
1011
- <Hsp_query-to>567</Hsp_query-to>
1012
- <Hsp_hit-from>44</Hsp_hit-from>
1013
- <Hsp_hit-to>172</Hsp_hit-to>
1014
- <Hsp_query-frame>3</Hsp_query-frame>
1015
- <Hsp_hit-frame>0</Hsp_hit-frame>
1016
- <Hsp_identity>76</Hsp_identity>
1017
- <Hsp_positive>94</Hsp_positive>
1018
- <Hsp_gaps>0</Hsp_gaps>
1019
- <Hsp_align-len>129</Hsp_align-len>
1020
- <Hsp_qseq>RRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK</Hsp_qseq>
1021
- <Hsp_hseq>QRSYPMPDEPFCTELSEEQRALKEKEKGSWTQLSQAEKVALYRLQFHETFAEMNHRSNEWKTVMGCVFFFIGFTALVIWWQRVYVFPKKVVTLTEERKAQQLQRLLDMKSNPIQGLAAHWDYEKKEWKK</Hsp_hseq>
1022
- <Hsp_midline>+R +P+P+ LS Q+ALKEKEK SW+ LS EKV LYR++F E+FAEMN SNEWKTV+G FFIGFTALVI WQ+ YV+ + +E A+Q +R+LDMK NPIQGLA+ WDYEK EWKK</Hsp_midline>
1023
- </Hsp>
1024
- </Hit_hsps>
1025
- </Hit>
1026
- </Iteration_hits>
1027
- <Iteration_stat>
1028
- <Statistics>
1029
- <Statistics_db-num>459708</Statistics_db-num>
1030
- <Statistics_db-len>170771147</Statistics_db-len>
1031
- <Statistics_hsp-len>0</Statistics_hsp-len>
1032
- <Statistics_eff-space>0</Statistics_eff-space>
1033
- <Statistics_kappa>0.041000</Statistics_kappa>
1034
- <Statistics_lambda>0.267000</Statistics_lambda>
1035
- <Statistics_entropy>0</Statistics_entropy>
1036
- </Statistics>
1037
- </Iteration_stat>
1038
- </Iteration>
1039
- </BlastOutput_iterations>
1040
- </BlastOutput>