sequenceserver 2.0.0.rc7 → 2.0.0.rc8

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Files changed (530) hide show
  1. checksums.yaml +4 -4
  2. data/bin/chromedriver +0 -0
  3. data/bin/geckodriver +0 -0
  4. data/bin/sequenceserver +31 -4
  5. data/lib/sequenceserver.rb +6 -1
  6. data/lib/sequenceserver/database.rb +7 -42
  7. data/lib/sequenceserver/exceptions.rb +14 -0
  8. data/lib/sequenceserver/makeblastdb.rb +121 -41
  9. data/lib/sequenceserver/routes.rb +1 -1
  10. data/lib/sequenceserver/version.rb +1 -1
  11. data/public/css/sequenceserver.css +8 -2
  12. data/public/css/sequenceserver.min.css +1 -1
  13. data/public/js/jquery_world.js +1 -1
  14. data/public/js/report.js +1 -2
  15. data/public/js/search.js +40 -18
  16. data/public/js/sidebar.js +50 -26
  17. data/public/sequenceserver-report.min.js +17 -17
  18. data/public/sequenceserver-search.min.js +2 -2
  19. data/views/layout.erb +1 -1
  20. data/views/report.erb +1 -1
  21. data/views/search.erb +1 -1
  22. metadata +4 -510
  23. data/.bootstrap/config.json +0 -433
  24. data/.codeclimate.yml +0 -31
  25. data/.csslintrc +0 -2
  26. data/.dockerignore +0 -1
  27. data/.eslintignore +0 -1
  28. data/.eslintrc.json +0 -36
  29. data/.gitignore +0 -56
  30. data/.mailmap +0 -5
  31. data/.rspec +0 -3
  32. data/.rubocop.yml +0 -61
  33. data/.travis.yml +0 -74
  34. data/AppImage/recipe.yml +0 -15
  35. data/AppImage/sequenceserver.desktop +0 -8
  36. data/AppImage/sequenceserver.png +0 -0
  37. data/AppImage/sequenceserver.sh +0 -16
  38. data/Dockerfile +0 -25
  39. data/LICENSE.txt +0 -661
  40. data/LICENSE/Apache.txt +0 -176
  41. data/LICENSE/d3.txt +0 -26
  42. data/README.md +0 -161
  43. data/package.json +0 -48
  44. data/public/vendor/.dependencies.json +0 -18
  45. data/public/vendor/.loaderversions +0 -1
  46. data/public/vendor/github/components/jquery@2.1.4/.gitignore +0 -1
  47. data/public/vendor/github/components/jquery@2.1.4/.jspm-hash +0 -1
  48. data/public/vendor/github/components/jquery@2.1.4/.jspm.json +0 -37
  49. data/public/vendor/github/components/jqueryui@1.11.4/.gitignore +0 -4
  50. data/public/vendor/github/components/jqueryui@1.11.4/.jspm-hash +0 -1
  51. data/public/vendor/github/components/jqueryui@1.11.4/.jspm.json +0 -136
  52. data/public/vendor/github/components/jqueryui@1.11.4/ui/.jshintrc +0 -24
  53. data/public/vendor/github/jspm/nodelibs-buffer@0.1.0/.jspm-hash +0 -1
  54. data/public/vendor/github/jspm/nodelibs-buffer@0.1.0/.jspm.json +0 -10
  55. data/public/vendor/github/jspm/nodelibs-events@0.1.1/.jspm-hash +0 -1
  56. data/public/vendor/github/jspm/nodelibs-events@0.1.1/.jspm.json +0 -10
  57. data/public/vendor/github/jspm/nodelibs-fs@0.1.2/.jspm-hash +0 -1
  58. data/public/vendor/github/jspm/nodelibs-module@0.1.0/.jspm-hash +0 -1
  59. data/public/vendor/github/jspm/nodelibs-module@0.1.0/.jspm.json +0 -3
  60. data/public/vendor/github/jspm/nodelibs-path@0.1.0/.jspm-hash +0 -1
  61. data/public/vendor/github/jspm/nodelibs-path@0.1.0/.jspm.json +0 -10
  62. data/public/vendor/github/jspm/nodelibs-process@0.1.1/.jspm-hash +0 -1
  63. data/public/vendor/github/jspm/nodelibs-stream@0.1.0/.jspm-hash +0 -1
  64. data/public/vendor/github/jspm/nodelibs-stream@0.1.0/.jspm.json +0 -10
  65. data/public/vendor/github/jspm/nodelibs-util@0.1.0/.jspm-hash +0 -1
  66. data/public/vendor/github/jspm/nodelibs-util@0.1.0/.jspm.json +0 -10
  67. data/public/vendor/github/mbostock/d3@3.5.6/.jspm-hash +0 -1
  68. data/public/vendor/github/mbostock/d3@3.5.6/.jspm.json +0 -76
  69. data/public/vendor/github/nicgirault/circosJs@1.7.0/.gitignore +0 -10
  70. data/public/vendor/github/nicgirault/circosJs@1.7.0/.jspm-hash +0 -1
  71. data/public/vendor/github/systemjs/plugin-css@0.1.15/.gitignore +0 -1
  72. data/public/vendor/github/systemjs/plugin-css@0.1.15/.jspm-hash +0 -1
  73. data/public/vendor/github/systemjs/plugin-css@0.1.15/.jspm.json +0 -4
  74. data/public/vendor/github/systemjs/plugin-json@0.1.0/.jspm-hash +0 -1
  75. data/public/vendor/github/twbs/bootstrap@3.3.5/.jspm-hash +0 -1
  76. data/public/vendor/github/twbs/bootstrap@3.3.5/.jspm.json +0 -100
  77. data/public/vendor/npm/amdefine@1.0.0/.jspm-hash +0 -1
  78. data/public/vendor/npm/amdefine@1.0.0/.jspm.json +0 -55
  79. data/public/vendor/npm/babel-core@5.8.23/.jspm-hash +0 -1
  80. data/public/vendor/npm/babel-runtime@5.8.20/.jspm-hash +0 -1
  81. data/public/vendor/npm/babel-runtime@5.8.20/.npmignore +0 -2
  82. data/public/vendor/npm/base62@0.1.1/.jspm-hash +0 -1
  83. data/public/vendor/npm/base62@0.1.1/.jspm.json +0 -49
  84. data/public/vendor/npm/base62@0.1.1/.travis.yml +0 -4
  85. data/public/vendor/npm/base64-js@0.0.8/.jspm-hash +0 -1
  86. data/public/vendor/npm/base64-js@0.0.8/.jspm.json +0 -77
  87. data/public/vendor/npm/base64-js@0.0.8/.travis.yml +0 -5
  88. data/public/vendor/npm/buffer@3.4.3/.jspm-hash +0 -1
  89. data/public/vendor/npm/buffer@3.4.3/.jspm.json +0 -105
  90. data/public/vendor/npm/buffer@3.4.3/.npmignore +0 -1
  91. data/public/vendor/npm/buffer@3.4.3/.travis.yml +0 -8
  92. data/public/vendor/npm/buffer@3.4.3/.zuul.yml +0 -20
  93. data/public/vendor/npm/core-js@1.1.2/.eslintrc +0 -36
  94. data/public/vendor/npm/core-js@1.1.2/.gitattributes +0 -1
  95. data/public/vendor/npm/core-js@1.1.2/.jspm-hash +0 -1
  96. data/public/vendor/npm/core-js@1.1.2/.npmignore +0 -10
  97. data/public/vendor/npm/core-js@1.1.2/.travis.yml +0 -3
  98. data/public/vendor/npm/core-util-is@1.0.1/.jspm-hash +0 -1
  99. data/public/vendor/npm/core-util-is@1.0.1/.jspm.json +0 -58
  100. data/public/vendor/npm/envify@3.4.0/.jspm-hash +0 -1
  101. data/public/vendor/npm/envify@3.4.0/.jspm.json +0 -72
  102. data/public/vendor/npm/envify@3.4.0/.npmignore +0 -2
  103. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/.jspm-hash +0 -1
  104. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/.jspm.json +0 -102
  105. data/public/vendor/npm/events@1.0.2/.jspm-hash +0 -1
  106. data/public/vendor/npm/events@1.0.2/.jspm.json +0 -67
  107. data/public/vendor/npm/events@1.0.2/.npmignore +0 -1
  108. data/public/vendor/npm/events@1.0.2/.travis.yml +0 -7
  109. data/public/vendor/npm/events@1.0.2/.zuul.yml +0 -12
  110. data/public/vendor/npm/font-awesome@4.4.0/.jspm-hash +0 -1
  111. data/public/vendor/npm/font-awesome@4.4.0/.jspm.json +0 -81
  112. data/public/vendor/npm/font-awesome@4.4.0/.npmignore +0 -42
  113. data/public/vendor/npm/ieee754@1.1.6/.jspm-hash +0 -1
  114. data/public/vendor/npm/ieee754@1.1.6/.jspm.json +0 -70
  115. data/public/vendor/npm/ieee754@1.1.6/.travis.yml +0 -7
  116. data/public/vendor/npm/ieee754@1.1.6/.zuul.yml +0 -20
  117. data/public/vendor/npm/inherits@2.0.1/.jspm-hash +0 -1
  118. data/public/vendor/npm/inherits@2.0.1/.jspm.json +0 -60
  119. data/public/vendor/npm/is-array@1.0.1/.jepso-ci.json +0 -3
  120. data/public/vendor/npm/is-array@1.0.1/.jspm-hash +0 -1
  121. data/public/vendor/npm/is-array@1.0.1/.jspm.json +0 -42
  122. data/public/vendor/npm/is-array@1.0.1/.npmignore +0 -0
  123. data/public/vendor/npm/isarray@0.0.1/.jspm-hash +0 -1
  124. data/public/vendor/npm/isarray@0.0.1/.jspm.json +0 -51
  125. data/public/vendor/npm/jstransform@10.1.0/.jshintrc +0 -28
  126. data/public/vendor/npm/jstransform@10.1.0/.jspm-hash +0 -1
  127. data/public/vendor/npm/jstransform@10.1.0/.jspm.json +0 -95
  128. data/public/vendor/npm/jstransform@10.1.0/.npmignore +0 -4
  129. data/public/vendor/npm/jstransform@10.1.0/.travis.yml +0 -8
  130. data/public/vendor/npm/path-browserify@0.0.0/.jspm-hash +0 -1
  131. data/public/vendor/npm/path-browserify@0.0.0/.jspm.json +0 -56
  132. data/public/vendor/npm/process@0.10.1/.jspm-hash +0 -1
  133. data/public/vendor/npm/react@0.13.3/.jspm-hash +0 -1
  134. data/public/vendor/npm/react@0.13.3/.jspm.json +0 -77
  135. data/public/vendor/npm/readable-stream@1.1.13/.jspm-hash +0 -1
  136. data/public/vendor/npm/readable-stream@1.1.13/.jspm.json +0 -95
  137. data/public/vendor/npm/readable-stream@1.1.13/.npmignore +0 -5
  138. data/public/vendor/npm/source-map@0.1.31/.jspm-hash +0 -1
  139. data/public/vendor/npm/source-map@0.1.31/.jspm.json +0 -133
  140. data/public/vendor/npm/source-map@0.1.31/.npmignore +0 -2
  141. data/public/vendor/npm/source-map@0.1.31/.travis.yml +0 -4
  142. data/public/vendor/npm/stream-browserify@1.0.0/.jspm-hash +0 -1
  143. data/public/vendor/npm/stream-browserify@1.0.0/.jspm.json +0 -77
  144. data/public/vendor/npm/stream-browserify@1.0.0/.travis.yml +0 -4
  145. data/public/vendor/npm/string_decoder@0.10.31/.jspm-hash +0 -1
  146. data/public/vendor/npm/string_decoder@0.10.31/.jspm.json +0 -58
  147. data/public/vendor/npm/string_decoder@0.10.31/.npmignore +0 -2
  148. data/public/vendor/npm/through@2.3.8/.jspm-hash +0 -1
  149. data/public/vendor/npm/through@2.3.8/.jspm.json +0 -72
  150. data/public/vendor/npm/through@2.3.8/.travis.yml +0 -5
  151. data/public/vendor/npm/underscore@1.8.3/.jspm-hash +0 -1
  152. data/public/vendor/npm/underscore@1.8.3/.jspm.json +0 -74
  153. data/public/vendor/npm/util@0.10.3/.jspm-hash +0 -1
  154. data/public/vendor/npm/util@0.10.3/.jspm.json +0 -58
  155. data/public/vendor/npm/util@0.10.3/.npmignore +0 -1
  156. data/public/vendor/npm/util@0.10.3/.travis.yml +0 -8
  157. data/public/vendor/npm/util@0.10.3/.zuul.yml +0 -10
  158. data/public/vendor/npm/webshim@1.15.8/.gitattributes +0 -12
  159. data/public/vendor/npm/webshim@1.15.8/.jspm-hash +0 -1
  160. data/public/vendor/npm/webshim@1.15.8/.jspm.json +0 -92
  161. data/public/vendor/npm/webshim@1.15.8/.npmignore +0 -16
  162. data/public/vendor/npm/webshim@1.15.8/.project +0 -12
  163. data/public/vendor/npm/webshim@1.15.8/demos/demos/filereader/upload/.keep +0 -0
  164. data/sequenceserver.gemspec +0 -55
  165. data/spec/blast_versions/blast_2.2.30/blast_2.2.30_spec.rb +0 -228
  166. data/spec/blast_versions/blast_2.2.30/import_spec_capybara_local_2.2.30.rb +0 -583
  167. data/spec/blast_versions/blast_2.2.31/blast_2.2.31_spec.rb +0 -228
  168. data/spec/blast_versions/blast_2.2.31/import_spec_capybara_local_2.2.31.rb +0 -587
  169. data/spec/blast_versions/blast_2.3.0/blast_2.3.0_spec.rb +0 -229
  170. data/spec/blast_versions/blast_2.3.0/import_spec_capybara_local_2.3.0.rb +0 -587
  171. data/spec/blast_versions/blast_2.4.0/blast_2.4.0_spec.rb +0 -228
  172. data/spec/blast_versions/blast_2.4.0/import_spec_capybara_local_2.4.0.rb +0 -588
  173. data/spec/blast_versions/blast_2.5.0/blast_2.5.0_spec.rb +0 -228
  174. data/spec/blast_versions/blast_2.5.0/import_spec_capybara_local_2.5.0.rb +0 -587
  175. data/spec/blast_versions/blast_2.6.0/blast_2.6.0_spec.rb +0 -228
  176. data/spec/blast_versions/blast_2.6.0/import_spec_capybara_local_2.6.0.rb +0 -587
  177. data/spec/blast_versions/blast_2.7.1/blast_2.7.1_spec.rb +0 -228
  178. data/spec/blast_versions/blast_2.7.1/import_spec_capybara_local_2.7.1.rb +0 -587
  179. data/spec/blast_versions/blast_2.8.1/blast_2.8.1_spec.rb +0 -228
  180. data/spec/blast_versions/blast_2.8.1/import_spec_capybara_local_2.8.1.rb +0 -587
  181. data/spec/blast_versions/blast_2.9.0/blast_2.9.0_spec.rb +0 -228
  182. data/spec/blast_versions/blast_2.9.0/import_spec_capybara_local_2.9.0.rb +0 -585
  183. data/spec/blast_versions/diamond_0.9.24/diamond_0.9.24_spec.rb +0 -176
  184. data/spec/blast_versions/diamond_0.9.24/import_spec_capybara_local_0.9.24.rb +0 -237
  185. data/spec/capybara_spec.rb +0 -345
  186. data/spec/config_spec.rb +0 -87
  187. data/spec/database/funky_ids/funky_ids.fa +0 -16
  188. data/spec/database/funky_ids/v4/funky_ids.fa.nhd +0 -8
  189. data/spec/database/funky_ids/v4/funky_ids.fa.nhi +0 -0
  190. data/spec/database/funky_ids/v4/funky_ids.fa.nhr +0 -0
  191. data/spec/database/funky_ids/v4/funky_ids.fa.nin +0 -0
  192. data/spec/database/funky_ids/v4/funky_ids.fa.nog +0 -0
  193. data/spec/database/funky_ids/v4/funky_ids.fa.nsd +0 -15
  194. data/spec/database/funky_ids/v4/funky_ids.fa.nsi +0 -0
  195. data/spec/database/funky_ids/v4/funky_ids.fa.nsq +0 -0
  196. data/spec/database/funky_ids/v5/funky_ids.fa.ndb +0 -0
  197. data/spec/database/funky_ids/v5/funky_ids.fa.nhd +0 -8
  198. data/spec/database/funky_ids/v5/funky_ids.fa.nhi +0 -0
  199. data/spec/database/funky_ids/v5/funky_ids.fa.nhr +0 -0
  200. data/spec/database/funky_ids/v5/funky_ids.fa.nin +0 -0
  201. data/spec/database/funky_ids/v5/funky_ids.fa.nog +0 -0
  202. data/spec/database/funky_ids/v5/funky_ids.fa.nos +0 -0
  203. data/spec/database/funky_ids/v5/funky_ids.fa.not +0 -0
  204. data/spec/database/funky_ids/v5/funky_ids.fa.nsq +0 -0
  205. data/spec/database/funky_ids/v5/funky_ids.fa.ntf +0 -0
  206. data/spec/database/funky_ids/v5/funky_ids.fa.nto +0 -0
  207. data/spec/database/funky_sequences/README.md +0 -14
  208. data/spec/database/funky_sequences/funky_aa_sequences.fa +0 -7
  209. data/spec/database/funky_sequences/funky_aa_sequences.fa.phd +0 -3
  210. data/spec/database/funky_sequences/funky_aa_sequences.fa.phi +0 -0
  211. data/spec/database/funky_sequences/funky_aa_sequences.fa.phr +0 -0
  212. data/spec/database/funky_sequences/funky_aa_sequences.fa.pin +0 -0
  213. data/spec/database/funky_sequences/funky_aa_sequences.fa.pog +0 -0
  214. data/spec/database/funky_sequences/funky_aa_sequences.fa.psd +0 -6
  215. data/spec/database/funky_sequences/funky_aa_sequences.fa.psi +0 -0
  216. data/spec/database/funky_sequences/funky_aa_sequences.fa.psq +0 -0
  217. data/spec/database/funky_sequences/funky_na_sequences.fa +0 -2
  218. data/spec/database/funky_sequences/funky_na_sequences.fa.nhr +0 -0
  219. data/spec/database/funky_sequences/funky_na_sequences.fa.nin +0 -0
  220. data/spec/database/funky_sequences/funky_na_sequences.fa.nog +0 -0
  221. data/spec/database/funky_sequences/funky_na_sequences.fa.nsd +0 -2
  222. data/spec/database/funky_sequences/funky_na_sequences.fa.nsi +0 -0
  223. data/spec/database/funky_sequences/funky_na_sequences.fa.nsq +0 -0
  224. data/spec/database/ox_parse_error/query.fa +0 -1
  225. data/spec/database/ox_parse_error/rand1.fa +0 -2
  226. data/spec/database/ox_parse_error/rand1.fa.nhd +0 -1
  227. data/spec/database/ox_parse_error/rand1.fa.nhi +0 -0
  228. data/spec/database/ox_parse_error/rand1.fa.nhr +0 -0
  229. data/spec/database/ox_parse_error/rand1.fa.nin +0 -0
  230. data/spec/database/ox_parse_error/rand1.fa.nog +0 -0
  231. data/spec/database/ox_parse_error/rand1.fa.nsd +0 -2
  232. data/spec/database/ox_parse_error/rand1.fa.nsi +0 -0
  233. data/spec/database/ox_parse_error/rand1.fa.nsq +0 -0
  234. data/spec/database/ox_parse_error/rand2.fa +0 -2
  235. data/spec/database/ox_parse_error/rand2.fa.nhd +0 -1
  236. data/spec/database/ox_parse_error/rand2.fa.nhi +0 -0
  237. data/spec/database/ox_parse_error/rand2.fa.nhr +0 -0
  238. data/spec/database/ox_parse_error/rand2.fa.nin +0 -0
  239. data/spec/database/ox_parse_error/rand2.fa.nog +0 -0
  240. data/spec/database/ox_parse_error/rand2.fa.nsd +0 -2
  241. data/spec/database/ox_parse_error/rand2.fa.nsi +0 -0
  242. data/spec/database/ox_parse_error/rand2.fa.nsq +0 -0
  243. data/spec/database/ox_parse_error_unique_ids/query.fa +0 -1
  244. data/spec/database/ox_parse_error_unique_ids/rand1.fa +0 -2
  245. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nhd +0 -1
  246. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nhi +0 -0
  247. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nhr +0 -0
  248. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nin +0 -0
  249. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nog +0 -0
  250. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nsd +0 -2
  251. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nsi +0 -0
  252. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nsq +0 -0
  253. data/spec/database/ox_parse_error_unique_ids/rand2.fa +0 -2
  254. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nhd +0 -1
  255. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nhi +0 -0
  256. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nhr +0 -0
  257. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nin +0 -0
  258. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nog +0 -0
  259. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nsd +0 -2
  260. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nsi +0 -0
  261. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nsq +0 -0
  262. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa +0 -6
  263. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhd +0 -1
  264. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhi +0 -0
  265. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhr +0 -0
  266. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nin +0 -0
  267. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nog +0 -0
  268. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsd +0 -2
  269. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsi +0 -0
  270. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsq +0 -0
  271. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.ndb +0 -0
  272. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhd +0 -8
  273. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhi +0 -0
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  479. data/spec/dotdir/diamond_0.9.24/blastp/job.yaml +0 -8
  480. data/spec/dotdir/diamond_0.9.24/blastx/DIAMOND_BLASTX_0.9.24.xml +0 -1040
  481. data/spec/dotdir/diamond_0.9.24/blastx/job.yaml +0 -8
  482. data/spec/dotdir/diamond_0.9.24/blastx_nohits/DIAMOND_BLASTX_NOHITS_0.9.24.xml +0 -41
  483. data/spec/dotdir/diamond_0.9.24/blastx_nohits/job.yaml +0 -8
  484. data/spec/download_helper.rb +0 -35
  485. data/spec/empty_config.yml +0 -0
  486. data/spec/makeblastdb_spec.rb +0 -121
  487. data/spec/routes_spec.rb +0 -93
  488. data/spec/sample.conf +0 -2
  489. data/spec/sequence_spec.rb +0 -99
  490. data/spec/sequences/MH011443_1_gi_1486783306_gb_MH011443_1.txt +0 -6
  491. data/spec/sequences/MH011443_1_gi_1486783307_gb_AYF55702_1.txt +0 -6
  492. data/spec/sequences/MH011443_1_gi_1528997474_gb_MH447967_1.txt +0 -30
  493. data/spec/sequences/MH011443_1_sp_P04637_P53_HUMAN.txt +0 -6
  494. data/spec/sequences/Nucleotide_TP53_COX41.fasta +0 -15
  495. data/spec/sequences/Protein_TP53_COX41.fasta +0 -12
  496. data/spec/sequences/Query_1_SI2_2_0_06267.txt +0 -6
  497. data/spec/sequences/alignment-2_hits.txt +0 -12
  498. data/spec/sequences/alignment-35_hits_diamond_blastp.txt +0 -210
  499. data/spec/sequences/alignment-35_hits_diamond_blastx.txt +0 -210
  500. data/spec/sequences/alignment-3_hits.txt +0 -18
  501. data/spec/sequences/alignment-40_hits_blastn.txt +0 -246
  502. data/spec/sequences/alignment-40_hits_blastp.txt +0 -240
  503. data/spec/sequences/alignment-40_hits_blastp_2.2.30.txt +0 -240
  504. data/spec/sequences/alignment-40_hits_blastx.txt +0 -240
  505. data/spec/sequences/alignment-40_hits_tblastn.txt +0 -240
  506. data/spec/sequences/alignment-40_hits_tblastn_2.2.30.txt +0 -240
  507. data/spec/sequences/alignment-40_hits_tblastx.txt +0 -2664
  508. data/spec/sequences/alignment-4_hits.txt +0 -24
  509. data/spec/sequences/alignment-4_hits_blastn.txt +0 -24
  510. data/spec/sequences/alignment-4_hits_blastp.txt +0 -24
  511. data/spec/sequences/alignment-4_hits_blastp_2.2.30.txt +0 -24
  512. data/spec/sequences/alignment-4_hits_blastx.txt +0 -24
  513. data/spec/sequences/alignment-4_hits_diamond_blastp.txt +0 -24
  514. data/spec/sequences/alignment-4_hits_diamond_blastx.txt +0 -24
  515. data/spec/sequences/alignment-4_hits_tblastn.txt +0 -24
  516. data/spec/sequences/alignment-4_hits_tblastn_2.2.30.txt +0 -24
  517. data/spec/sequences/alignment-4_hits_tblastx.txt +0 -318
  518. data/spec/sequences/nucleotide_query.fa +0 -21
  519. data/spec/sequences/problematic_query.fa +0 -5
  520. data/spec/sequences/protein_query.fa +0 -9
  521. data/spec/sequences/sample_query_fire_ant_obps.fa +0 -44
  522. data/spec/sequences/sequenceserver-2_hits.fa +0 -10
  523. data/spec/sequences/sequenceserver-SI2.2.0_06267.fa +0 -5
  524. data/spec/sequences/sp_P04637_P53_HUMAN_gi_1099170394_ref_XP_018868681_1.txt +0 -6
  525. data/spec/sequences/sp_P04637_P53_HUMAN_gi_120407068_ref_NP_000537_3.txt +0 -6
  526. data/spec/sequences/sp_P04637_P53_HUMAN_gi_1484127324_gb_MG595988_1.txt +0 -6
  527. data/spec/sequences/sp_P04637_P53_HUMAN_gi_395440626_gb_JQ694049_1.txt +0 -6
  528. data/spec/sequences/sp_P04637_P53_HUMAN_sp_P04637_P53_HUMAN.txt +0 -6
  529. data/spec/sequenceserver_spec.rb +0 -90
  530. data/spec/spec_helper.rb +0 -63
data/spec/database/without_parse_seqids/without_parse_seqids.fa DELETED
@@ -1,10 +0,0 @@
1
- >SI2.2.0_06267 locus=Si_gnF.scaffold02592[1282609..1284114].pep_2 quality=100.00
2
- MNTLWLSLWDYPGKLPLNFMVFDTKDDLQAAYWRDPYSIPLAVIFEDPQPISQRLIYEIR
3
- TNPSYTLPPPPTKLYSAPISCRKNKTGHWMDDILSIKTGESCPVNNYLHSGFLALQMITD
4
- ITKIKLENSDVTIPDIKLIMFPKEPYTADWMLAFRVVIPLYMVLALSQFITYLLILIVGE
5
- KENKIKEGMKMMGLNDSVF
6
- >SI2.2.0_13722 locus=Si_gnF.scaffold06207[1925625..1928536].pep_1 quality=100.00
7
- MSANRLNVLVTLMLAVALLVTESGNAQVDGYLQFNPKRSAVSSPQKYCGKKLSNALQIIC
8
- DGVYNSMFKKSGQDFPPQNKRHIAHRINGNEEESFTTLKSNFLNWCVEVYHRHYRFVFVS
9
- EMEMADYPLAYDISPYLPPFLSRARARGMLDGRFAGRRYRRESRGIHEECCINGCTINEL
10
- TSYCGP
data/spec/database_spec.rb DELETED
@@ -1,51 +0,0 @@
1
- require 'spec_helper'
2
- require 'sequenceserver/database'
3
-
4
- # Test Database class.
5
- module SequenceServer
6
- describe 'Database' do
7
- let 'root' do
8
- __dir__
9
- end
10
-
11
- let 'database_dir' do
12
- File.join(root, 'database')
13
- end
14
-
15
- let 'database_dir_sample' do
16
- File.join(database_dir, 'sample')
17
- end
18
-
19
- before do
20
- SequenceServer.init
21
- end
22
-
23
- before :each do
24
- # Empty Database collection so we can use different directories as
25
- # needed.
26
- Database.clear
27
- end
28
-
29
- it 'can tell NCBI multipart database name' do
30
- sample_name1 = '/home/ben/pd.ben/sequenceserver/db/nr'
31
- sample_name2 = '/home/ben/pd.ben/sequenceserver/db/nr.00'
32
- sample_name3 = '/home/ben/pd.ben/sequenceserver/db/img3.5.finished.faa.01'
33
- Database.multipart_database_name?(sample_name1).should be_falsey
34
- Database.multipart_database_name?(sample_name2).should be_truthy
35
- Database.multipart_database_name?(sample_name3).should be_truthy
36
- end
37
-
38
- let 'solenopsis_protein_database' do
39
- path = 'spec/database/sample/proteins/Solenopsis_invicta/'\
40
- 'Sinvicta2-2-3.prot.subset.fasta'
41
- id = Digest::MD5.hexdigest File.expand_path path
42
- Database[id].first
43
- end
44
-
45
- it 'knows if a given accession is in the database or not' do
46
- SequenceServer.config[:database_dir] = database_dir_sample
47
- Database.scan_databases_dir
48
- solenopsis_protein_database.include?('SI2.2.0_06267').should be_truthy
49
- end
50
- end
51
- end
data/spec/doctor_spec.disabled.rb DELETED
@@ -1,107 +0,0 @@
1
- require 'spec_helper'
2
- require 'sequenceserver/doctor'
3
- require 'sequenceserver/database'
4
-
5
- # Test suite for SequenceServer --doctor
6
- module SequenceServer
7
- describe 'Doctor' do
8
- let 'root' do
9
- SequenceServer.root
10
- end
11
-
12
- let 'empty_config' do
13
- File.join(root, 'spec', 'empty_config.yml')
14
- end
15
-
16
- let 'config' do
17
- Config.new
18
- # { :config_file => empty_config }
19
- end
20
-
21
- let 'database_dir' do
22
- File.join(root, 'spec', 'database')
23
- end
24
-
25
- let 'database_dir_unformatted' do
26
- File.join(database_dir, 'unformatted')
27
- end
28
-
29
- let 'database_dir_sample' do
30
- File.join(database_dir, 'sample')
31
- end
32
-
33
- let 'database_without_parseqids' do
34
- File.join(database_dir, 'without_parse_seqids')
35
- end
36
-
37
- let 'database_funky_ids' do
38
- File.join(database_dir, 'funky_ids')
39
- end
40
-
41
- let 'database_problematic_ids' do
42
- File.join(database_dir, 'funky_ids')
43
- end
44
-
45
- let 'binary_file' do
46
- File.join(database_dir_sample, 'proteins', 'Solenopsis_invicta',
47
- 'Sinvicta2-2-3.prot.subset.fasta.phr')
48
- end
49
-
50
- let 'data_for_makeblastdb' do
51
- [
52
- File.join(database_dir_unformatted, 'Cardiocondyla_obscurior',
53
- 'Cobs1.4.proteins.fa'),
54
- :protein,
55
- 'Cobs 1.4 proteins',
56
- true
57
- ]
58
- end
59
-
60
- let 'makeblastdb_result_pattern' do
61
- File.join(database_dir_unformatted, 'Cardiocondyla_obscurior',
62
- 'Cobs1.4.proteins.fa.*')
63
- end
64
-
65
- before :each do
66
- # Empty Database collection so we can use different directories as
67
- # needed.
68
- Database.clear
69
- end
70
-
71
- it 'detects databases formatted without -parse_seqids option' do
72
- SequenceServer.init(config.data.update :database_dir => database_without_parseqids)
73
- Database.scan_databases_dir
74
-
75
- doctor = Doctor.new
76
- Doctor.inspect_parse_seqids(doctor.all_seqids).should_not be_empty
77
- end
78
-
79
- it 'detects databases with funky (numeric) sequence ids' do
80
- SequenceServer.init(config.data.update :database_dir => database_funky_ids)
81
- Database.scan_databases_dir
82
- selector = proc { |id| !id.to_i.zero? }
83
-
84
- doctor = Doctor.new
85
- Doctor.inspect_seqids(doctor.all_seqids, &selector).should_not be_empty
86
- end
87
-
88
- it 'detects databases with problematic sequence ids' do
89
- SequenceServer.init(config.data.update :database_dir => database_problematic_ids)
90
- Database.scan_databases_dir
91
-
92
- selector = proc { |id| id.match(Doctor::AVOID_ID_REGEX) }
93
-
94
- doctor = Doctor.new
95
- Doctor.inspect_seqids(doctor.all_seqids, &selector).should_not be_empty
96
- end
97
-
98
- # a check for false positive
99
- it 'does not detect normal databases as problematic' do
100
- SequenceServer.init(config.data.update :database_dir => database_dir_sample)
101
- Database.scan_databases_dir
102
-
103
- doctor = Doctor.new
104
- Doctor.inspect_parse_seqids(doctor.all_seqids).should be_empty
105
- end
106
- end
107
- end
data/spec/dotdir/blast_2.2.30/blastn/BLASTN_XML_2.2.30.xml DELETED
@@ -1,1201 +0,0 @@
1
- <?xml version="1.0"?>
2
- <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
3
- <BlastOutput>
4
- <BlastOutput_program>blastn</BlastOutput_program>
5
- <BlastOutput_version>BLASTN 2.2.30+</BlastOutput_version>
6
- <BlastOutput_reference>Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), &quot;A greedy algorithm for aligning DNA sequences&quot;, J Comput Biol 2000; 7(1-2):203-14.</BlastOutput_reference>
7
- <BlastOutput_db>nt_db/nt</BlastOutput_db>
8
- <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
9
- <BlastOutput_query-def>MH011443.1 Homo sapiens TP53 (TP53) gene, exon 5 and partial cds</BlastOutput_query-def>
10
- <BlastOutput_query-len>123</BlastOutput_query-len>
11
- <BlastOutput_param>
12
- <Parameters>
13
- <Parameters_expect>10</Parameters_expect>
14
- <Parameters_sc-match>1</Parameters_sc-match>
15
- <Parameters_sc-mismatch>-2</Parameters_sc-mismatch>
16
- <Parameters_gap-open>0</Parameters_gap-open>
17
- <Parameters_gap-extend>0</Parameters_gap-extend>
18
- <Parameters_filter>L;m;</Parameters_filter>
19
- </Parameters>
20
- </BlastOutput_param>
21
- <BlastOutput_iterations>
22
- <Iteration>
23
- <Iteration_iter-num>1</Iteration_iter-num>
24
- <Iteration_query-ID>Query_1</Iteration_query-ID>
25
- <Iteration_query-def>MH011443.1 Homo sapiens TP53 (TP53) gene, exon 5 and partial cds</Iteration_query-def>
26
- <Iteration_query-len>123</Iteration_query-len>
27
- <Iteration_hits>
28
- <Hit>
29
- <Hit_num>1</Hit_num>
30
- <Hit_id>gi|1486783306|gb|MH011443.1|</Hit_id>
31
- <Hit_def>Homo sapiens TP53 (TP53) gene, exon 5 and partial cds</Hit_def>
32
- <Hit_accession>MH011443</Hit_accession>
33
- <Hit_len>123</Hit_len>
34
- <Hit_hsps>
35
- <Hsp>
36
- <Hsp_num>1</Hsp_num>
37
- <Hsp_bit-score>228.258</Hsp_bit-score>
38
- <Hsp_score>123</Hsp_score>
39
- <Hsp_evalue>3.75021e-56</Hsp_evalue>
40
- <Hsp_query-from>1</Hsp_query-from>
41
- <Hsp_query-to>123</Hsp_query-to>
42
- <Hsp_hit-from>1</Hsp_hit-from>
43
- <Hsp_hit-to>123</Hsp_hit-to>
44
- <Hsp_query-frame>1</Hsp_query-frame>
45
- <Hsp_hit-frame>1</Hsp_hit-frame>
46
- <Hsp_identity>123</Hsp_identity>
47
- <Hsp_positive>123</Hsp_positive>
48
- <Hsp_gaps>0</Hsp_gaps>
49
- <Hsp_align-len>123</Hsp_align-len>
50
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
51
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
52
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
53
- </Hsp>
54
- </Hit_hsps>
55
- </Hit>
56
- <Hit>
57
- <Hit_num>2</Hit_num>
58
- <Hit_id>gi|1528997474|gb|MH447967.1|</Hit_id>
59
- <Hit_def>Homo sapiens tumor protein p53 (TP53) gene, partial cds</Hit_def>
60
- <Hit_accession>MH447967</Hit_accession>
61
- <Hit_len>174</Hit_len>
62
- <Hit_hsps>
63
- <Hsp>
64
- <Hsp_num>1</Hsp_num>
65
- <Hsp_bit-score>222.718</Hsp_bit-score>
66
- <Hsp_score>120</Hsp_score>
67
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
68
- <Hsp_query-from>1</Hsp_query-from>
69
- <Hsp_query-to>123</Hsp_query-to>
70
- <Hsp_hit-from>34</Hsp_hit-from>
71
- <Hsp_hit-to>156</Hsp_hit-to>
72
- <Hsp_query-frame>1</Hsp_query-frame>
73
- <Hsp_hit-frame>1</Hsp_hit-frame>
74
- <Hsp_identity>122</Hsp_identity>
75
- <Hsp_positive>122</Hsp_positive>
76
- <Hsp_gaps>0</Hsp_gaps>
77
- <Hsp_align-len>123</Hsp_align-len>
78
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
79
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
80
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
81
- </Hsp>
82
- </Hit_hsps>
83
- </Hit>
84
- <Hit>
85
- <Hit_num>3</Hit_num>
86
- <Hit_id>gi|1484127336|gb|MG595994.1|</Hit_id>
87
- <Hit_def>Homo sapiens isolate TWH-1698-0-1 mutant tumor protein p53 (TP53) mRNA, complete cds</Hit_def>
88
- <Hit_accession>MG595994</Hit_accession>
89
- <Hit_len>1182</Hit_len>
90
- <Hit_hsps>
91
- <Hsp>
92
- <Hsp_num>1</Hsp_num>
93
- <Hsp_bit-score>222.718</Hsp_bit-score>
94
- <Hsp_score>120</Hsp_score>
95
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
96
- <Hsp_query-from>1</Hsp_query-from>
97
- <Hsp_query-to>123</Hsp_query-to>
98
- <Hsp_hit-from>436</Hsp_hit-from>
99
- <Hsp_hit-to>558</Hsp_hit-to>
100
- <Hsp_query-frame>1</Hsp_query-frame>
101
- <Hsp_hit-frame>1</Hsp_hit-frame>
102
- <Hsp_identity>122</Hsp_identity>
103
- <Hsp_positive>122</Hsp_positive>
104
- <Hsp_gaps>0</Hsp_gaps>
105
- <Hsp_align-len>123</Hsp_align-len>
106
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
107
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
108
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
109
- </Hsp>
110
- </Hit_hsps>
111
- </Hit>
112
- <Hit>
113
- <Hit_num>4</Hit_num>
114
- <Hit_id>gi|1484127334|gb|MG595993.1|</Hit_id>
115
- <Hit_def>Homo sapiens isolate TWH-0395-0-1 truncated tumor protein p53 (TP53) mRNA, complete cds</Hit_def>
116
- <Hit_accession>MG595993</Hit_accession>
117
- <Hit_len>1182</Hit_len>
118
- <Hit_hsps>
119
- <Hsp>
120
- <Hsp_num>1</Hsp_num>
121
- <Hsp_bit-score>222.718</Hsp_bit-score>
122
- <Hsp_score>120</Hsp_score>
123
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
124
- <Hsp_query-from>1</Hsp_query-from>
125
- <Hsp_query-to>123</Hsp_query-to>
126
- <Hsp_hit-from>436</Hsp_hit-from>
127
- <Hsp_hit-to>558</Hsp_hit-to>
128
- <Hsp_query-frame>1</Hsp_query-frame>
129
- <Hsp_hit-frame>1</Hsp_hit-frame>
130
- <Hsp_identity>122</Hsp_identity>
131
- <Hsp_positive>122</Hsp_positive>
132
- <Hsp_gaps>0</Hsp_gaps>
133
- <Hsp_align-len>123</Hsp_align-len>
134
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
135
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
136
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
137
- </Hsp>
138
- </Hit_hsps>
139
- </Hit>
140
- <Hit>
141
- <Hit_num>5</Hit_num>
142
- <Hit_id>gi|1484127332|gb|MG595992.1|</Hit_id>
143
- <Hit_def>Homo sapiens isolate TWH-0602-0-1 mutant tumor protein p53 (TP53) mRNA, complete cds</Hit_def>
144
- <Hit_accession>MG595992</Hit_accession>
145
- <Hit_len>1182</Hit_len>
146
- <Hit_hsps>
147
- <Hsp>
148
- <Hsp_num>1</Hsp_num>
149
- <Hsp_bit-score>222.718</Hsp_bit-score>
150
- <Hsp_score>120</Hsp_score>
151
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
152
- <Hsp_query-from>1</Hsp_query-from>
153
- <Hsp_query-to>123</Hsp_query-to>
154
- <Hsp_hit-from>436</Hsp_hit-from>
155
- <Hsp_hit-to>558</Hsp_hit-to>
156
- <Hsp_query-frame>1</Hsp_query-frame>
157
- <Hsp_hit-frame>1</Hsp_hit-frame>
158
- <Hsp_identity>122</Hsp_identity>
159
- <Hsp_positive>122</Hsp_positive>
160
- <Hsp_gaps>0</Hsp_gaps>
161
- <Hsp_align-len>123</Hsp_align-len>
162
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
163
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
164
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
165
- </Hsp>
166
- </Hit_hsps>
167
- </Hit>
168
- <Hit>
169
- <Hit_num>6</Hit_num>
170
- <Hit_id>gi|1484127330|gb|MG595991.1|</Hit_id>
171
- <Hit_def>Homo sapiens isolate TWH-1681-0-1 mutant tumor protein p53 (TP53) mRNA, complete cds</Hit_def>
172
- <Hit_accession>MG595991</Hit_accession>
173
- <Hit_len>1182</Hit_len>
174
- <Hit_hsps>
175
- <Hsp>
176
- <Hsp_num>1</Hsp_num>
177
- <Hsp_bit-score>222.718</Hsp_bit-score>
178
- <Hsp_score>120</Hsp_score>
179
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
180
- <Hsp_query-from>1</Hsp_query-from>
181
- <Hsp_query-to>123</Hsp_query-to>
182
- <Hsp_hit-from>436</Hsp_hit-from>
183
- <Hsp_hit-to>558</Hsp_hit-to>
184
- <Hsp_query-frame>1</Hsp_query-frame>
185
- <Hsp_hit-frame>1</Hsp_hit-frame>
186
- <Hsp_identity>122</Hsp_identity>
187
- <Hsp_positive>122</Hsp_positive>
188
- <Hsp_gaps>0</Hsp_gaps>
189
- <Hsp_align-len>123</Hsp_align-len>
190
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
191
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
192
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
193
- </Hsp>
194
- </Hit_hsps>
195
- </Hit>
196
- <Hit>
197
- <Hit_num>7</Hit_num>
198
- <Hit_id>gi|1484127328|gb|MG595990.1|</Hit_id>
199
- <Hit_def>Homo sapiens isolate KWH-0019-0-1 mutant tumor protein p53 (TP53) mRNA, complete cds</Hit_def>
200
- <Hit_accession>MG595990</Hit_accession>
201
- <Hit_len>1182</Hit_len>
202
- <Hit_hsps>
203
- <Hsp>
204
- <Hsp_num>1</Hsp_num>
205
- <Hsp_bit-score>222.718</Hsp_bit-score>
206
- <Hsp_score>120</Hsp_score>
207
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
208
- <Hsp_query-from>1</Hsp_query-from>
209
- <Hsp_query-to>123</Hsp_query-to>
210
- <Hsp_hit-from>436</Hsp_hit-from>
211
- <Hsp_hit-to>558</Hsp_hit-to>
212
- <Hsp_query-frame>1</Hsp_query-frame>
213
- <Hsp_hit-frame>1</Hsp_hit-frame>
214
- <Hsp_identity>122</Hsp_identity>
215
- <Hsp_positive>122</Hsp_positive>
216
- <Hsp_gaps>0</Hsp_gaps>
217
- <Hsp_align-len>123</Hsp_align-len>
218
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
219
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
220
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
221
- </Hsp>
222
- </Hit_hsps>
223
- </Hit>
224
- <Hit>
225
- <Hit_num>8</Hit_num>
226
- <Hit_id>gi|1484127326|gb|MG595989.1|</Hit_id>
227
- <Hit_def>Homo sapiens isolate TWH-0855-0-1 mutant tumor protein p53 (TP53) mRNA, complete cds</Hit_def>
228
- <Hit_accession>MG595989</Hit_accession>
229
- <Hit_len>1182</Hit_len>
230
- <Hit_hsps>
231
- <Hsp>
232
- <Hsp_num>1</Hsp_num>
233
- <Hsp_bit-score>222.718</Hsp_bit-score>
234
- <Hsp_score>120</Hsp_score>
235
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
236
- <Hsp_query-from>1</Hsp_query-from>
237
- <Hsp_query-to>123</Hsp_query-to>
238
- <Hsp_hit-from>436</Hsp_hit-from>
239
- <Hsp_hit-to>558</Hsp_hit-to>
240
- <Hsp_query-frame>1</Hsp_query-frame>
241
- <Hsp_hit-frame>1</Hsp_hit-frame>
242
- <Hsp_identity>122</Hsp_identity>
243
- <Hsp_positive>122</Hsp_positive>
244
- <Hsp_gaps>0</Hsp_gaps>
245
- <Hsp_align-len>123</Hsp_align-len>
246
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
247
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
248
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
249
- </Hsp>
250
- </Hit_hsps>
251
- </Hit>
252
- <Hit>
253
- <Hit_num>9</Hit_num>
254
- <Hit_id>gi|1484127324|gb|MG595988.1|</Hit_id>
255
- <Hit_def>Homo sapiens isolate HKSH-0182-0-1 mutant tumor protein p53 (TP53) mRNA, complete cds</Hit_def>
256
- <Hit_accession>MG595988</Hit_accession>
257
- <Hit_len>1182</Hit_len>
258
- <Hit_hsps>
259
- <Hsp>
260
- <Hsp_num>1</Hsp_num>
261
- <Hsp_bit-score>222.718</Hsp_bit-score>
262
- <Hsp_score>120</Hsp_score>
263
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
264
- <Hsp_query-from>1</Hsp_query-from>
265
- <Hsp_query-to>123</Hsp_query-to>
266
- <Hsp_hit-from>436</Hsp_hit-from>
267
- <Hsp_hit-to>558</Hsp_hit-to>
268
- <Hsp_query-frame>1</Hsp_query-frame>
269
- <Hsp_hit-frame>1</Hsp_hit-frame>
270
- <Hsp_identity>122</Hsp_identity>
271
- <Hsp_positive>122</Hsp_positive>
272
- <Hsp_gaps>0</Hsp_gaps>
273
- <Hsp_align-len>123</Hsp_align-len>
274
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
275
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
276
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
277
- </Hsp>
278
- </Hit_hsps>
279
- </Hit>
280
- <Hit>
281
- <Hit_num>10</Hit_num>
282
- <Hit_id>gi|1484127322|gb|MG595987.1|</Hit_id>
283
- <Hit_def>Homo sapiens isolate TWH-0104-0-1 mutant tumor protein p53 (TP53) mRNA, complete cds</Hit_def>
284
- <Hit_accession>MG595987</Hit_accession>
285
- <Hit_len>1182</Hit_len>
286
- <Hit_hsps>
287
- <Hsp>
288
- <Hsp_num>1</Hsp_num>
289
- <Hsp_bit-score>222.718</Hsp_bit-score>
290
- <Hsp_score>120</Hsp_score>
291
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
292
- <Hsp_query-from>1</Hsp_query-from>
293
- <Hsp_query-to>123</Hsp_query-to>
294
- <Hsp_hit-from>436</Hsp_hit-from>
295
- <Hsp_hit-to>558</Hsp_hit-to>
296
- <Hsp_query-frame>1</Hsp_query-frame>
297
- <Hsp_hit-frame>1</Hsp_hit-frame>
298
- <Hsp_identity>122</Hsp_identity>
299
- <Hsp_positive>122</Hsp_positive>
300
- <Hsp_gaps>0</Hsp_gaps>
301
- <Hsp_align-len>123</Hsp_align-len>
302
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
303
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
304
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
305
- </Hsp>
306
- </Hit_hsps>
307
- </Hit>
308
- <Hit>
309
- <Hit_num>11</Hit_num>
310
- <Hit_id>gi|1484127320|gb|MG595986.1|</Hit_id>
311
- <Hit_def>Homo sapiens isolate TWH-1542-0-1 mutant tumor protein p53 (TP53) mRNA, complete cds</Hit_def>
312
- <Hit_accession>MG595986</Hit_accession>
313
- <Hit_len>1182</Hit_len>
314
- <Hit_hsps>
315
- <Hsp>
316
- <Hsp_num>1</Hsp_num>
317
- <Hsp_bit-score>222.718</Hsp_bit-score>
318
- <Hsp_score>120</Hsp_score>
319
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
320
- <Hsp_query-from>1</Hsp_query-from>
321
- <Hsp_query-to>123</Hsp_query-to>
322
- <Hsp_hit-from>436</Hsp_hit-from>
323
- <Hsp_hit-to>558</Hsp_hit-to>
324
- <Hsp_query-frame>1</Hsp_query-frame>
325
- <Hsp_hit-frame>1</Hsp_hit-frame>
326
- <Hsp_identity>122</Hsp_identity>
327
- <Hsp_positive>122</Hsp_positive>
328
- <Hsp_gaps>0</Hsp_gaps>
329
- <Hsp_align-len>123</Hsp_align-len>
330
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
331
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
332
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
333
- </Hsp>
334
- </Hit_hsps>
335
- </Hit>
336
- <Hit>
337
- <Hit_num>12</Hit_num>
338
- <Hit_id>gi|1484127308|gb|MG595980.1|</Hit_id>
339
- <Hit_def>Homo sapiens isolate TWH-0571-0-1 mutant tumor protein p53 (TP53) mRNA, complete cds</Hit_def>
340
- <Hit_accession>MG595980</Hit_accession>
341
- <Hit_len>1182</Hit_len>
342
- <Hit_hsps>
343
- <Hsp>
344
- <Hsp_num>1</Hsp_num>
345
- <Hsp_bit-score>222.718</Hsp_bit-score>
346
- <Hsp_score>120</Hsp_score>
347
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
348
- <Hsp_query-from>1</Hsp_query-from>
349
- <Hsp_query-to>123</Hsp_query-to>
350
- <Hsp_hit-from>436</Hsp_hit-from>
351
- <Hsp_hit-to>558</Hsp_hit-to>
352
- <Hsp_query-frame>1</Hsp_query-frame>
353
- <Hsp_hit-frame>1</Hsp_hit-frame>
354
- <Hsp_identity>122</Hsp_identity>
355
- <Hsp_positive>122</Hsp_positive>
356
- <Hsp_gaps>0</Hsp_gaps>
357
- <Hsp_align-len>123</Hsp_align-len>
358
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
359
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
360
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
361
- </Hsp>
362
- </Hit_hsps>
363
- </Hit>
364
- <Hit>
365
- <Hit_num>13</Hit_num>
366
- <Hit_id>gi|1484127306|gb|MG595979.1|</Hit_id>
367
- <Hit_def>Homo sapiens isolate TWH-1414-0-1 mutant tumor protein p53 (TP53) mRNA, complete cds</Hit_def>
368
- <Hit_accession>MG595979</Hit_accession>
369
- <Hit_len>1182</Hit_len>
370
- <Hit_hsps>
371
- <Hsp>
372
- <Hsp_num>1</Hsp_num>
373
- <Hsp_bit-score>222.718</Hsp_bit-score>
374
- <Hsp_score>120</Hsp_score>
375
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
376
- <Hsp_query-from>1</Hsp_query-from>
377
- <Hsp_query-to>123</Hsp_query-to>
378
- <Hsp_hit-from>436</Hsp_hit-from>
379
- <Hsp_hit-to>558</Hsp_hit-to>
380
- <Hsp_query-frame>1</Hsp_query-frame>
381
- <Hsp_hit-frame>1</Hsp_hit-frame>
382
- <Hsp_identity>122</Hsp_identity>
383
- <Hsp_positive>122</Hsp_positive>
384
- <Hsp_gaps>0</Hsp_gaps>
385
- <Hsp_align-len>123</Hsp_align-len>
386
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
387
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
388
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
389
- </Hsp>
390
- </Hit_hsps>
391
- </Hit>
392
- <Hit>
393
- <Hit_num>14</Hit_num>
394
- <Hit_id>gi|1472901693|gb|MH366343.1|</Hit_id>
395
- <Hit_def>Homo sapiens isolate 62F TP53 (TP53) gene, exon 5 and partial cds</Hit_def>
396
- <Hit_accession>MH366343</Hit_accession>
397
- <Hit_len>123</Hit_len>
398
- <Hit_hsps>
399
- <Hsp>
400
- <Hsp_num>1</Hsp_num>
401
- <Hsp_bit-score>222.718</Hsp_bit-score>
402
- <Hsp_score>120</Hsp_score>
403
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
404
- <Hsp_query-from>1</Hsp_query-from>
405
- <Hsp_query-to>123</Hsp_query-to>
406
- <Hsp_hit-from>1</Hsp_hit-from>
407
- <Hsp_hit-to>123</Hsp_hit-to>
408
- <Hsp_query-frame>1</Hsp_query-frame>
409
- <Hsp_hit-frame>1</Hsp_hit-frame>
410
- <Hsp_identity>122</Hsp_identity>
411
- <Hsp_positive>122</Hsp_positive>
412
- <Hsp_gaps>0</Hsp_gaps>
413
- <Hsp_align-len>123</Hsp_align-len>
414
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
415
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
416
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
417
- </Hsp>
418
- </Hit_hsps>
419
- </Hit>
420
- <Hit>
421
- <Hit_num>15</Hit_num>
422
- <Hit_id>gi|1548994291|gb|CP034495.1|</Hit_id>
423
- <Hit_def>Eukaryotic synthetic construct chromosome 17 &gt;gi|1549096955|gb|CP034520.1| Eukaryotic synthetic construct chromosome 17</Hit_def>
424
- <Hit_accession>CP034495</Hit_accession>
425
- <Hit_len>88299790</Hit_len>
426
- <Hit_hsps>
427
- <Hsp>
428
- <Hsp_num>1</Hsp_num>
429
- <Hsp_bit-score>222.718</Hsp_bit-score>
430
- <Hsp_score>120</Hsp_score>
431
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
432
- <Hsp_query-from>1</Hsp_query-from>
433
- <Hsp_query-to>123</Hsp_query-to>
434
- <Hsp_hit-from>7578494</Hsp_hit-from>
435
- <Hsp_hit-to>7578372</Hsp_hit-to>
436
- <Hsp_query-frame>1</Hsp_query-frame>
437
- <Hsp_hit-frame>-1</Hsp_hit-frame>
438
- <Hsp_identity>122</Hsp_identity>
439
- <Hsp_positive>122</Hsp_positive>
440
- <Hsp_gaps>0</Hsp_gaps>
441
- <Hsp_align-len>123</Hsp_align-len>
442
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
443
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
444
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
445
- </Hsp>
446
- <Hsp>
447
- <Hsp_num>2</Hsp_num>
448
- <Hsp_bit-score>222.718</Hsp_bit-score>
449
- <Hsp_score>120</Hsp_score>
450
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
451
- <Hsp_query-from>1</Hsp_query-from>
452
- <Hsp_query-to>123</Hsp_query-to>
453
- <Hsp_hit-from>87758763</Hsp_hit-from>
454
- <Hsp_hit-to>87758641</Hsp_hit-to>
455
- <Hsp_query-frame>1</Hsp_query-frame>
456
- <Hsp_hit-frame>-1</Hsp_hit-frame>
457
- <Hsp_identity>122</Hsp_identity>
458
- <Hsp_positive>122</Hsp_positive>
459
- <Hsp_gaps>0</Hsp_gaps>
460
- <Hsp_align-len>123</Hsp_align-len>
461
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
462
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
463
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
464
- </Hsp>
465
- </Hit_hsps>
466
- </Hit>
467
- <Hit>
468
- <Hit_num>16</Hit_num>
469
- <Hit_id>gi|1233272224|gb|KX710182.1|</Hit_id>
470
- <Hit_def>Homo sapiens TP53 gene, complete cds</Hit_def>
471
- <Hit_accession>KX710182</Hit_accession>
472
- <Hit_len>3751</Hit_len>
473
- <Hit_hsps>
474
- <Hsp>
475
- <Hsp_num>1</Hsp_num>
476
- <Hsp_bit-score>222.718</Hsp_bit-score>
477
- <Hsp_score>120</Hsp_score>
478
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
479
- <Hsp_query-from>1</Hsp_query-from>
480
- <Hsp_query-to>123</Hsp_query-to>
481
- <Hsp_hit-from>1038</Hsp_hit-from>
482
- <Hsp_hit-to>1160</Hsp_hit-to>
483
- <Hsp_query-frame>1</Hsp_query-frame>
484
- <Hsp_hit-frame>1</Hsp_hit-frame>
485
- <Hsp_identity>122</Hsp_identity>
486
- <Hsp_positive>122</Hsp_positive>
487
- <Hsp_gaps>0</Hsp_gaps>
488
- <Hsp_align-len>123</Hsp_align-len>
489
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
490
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
491
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
492
- </Hsp>
493
- </Hit_hsps>
494
- </Hit>
495
- <Hit>
496
- <Hit_num>17</Hit_num>
497
- <Hit_id>gi|1147690151|emb|LT739496.1|</Hit_id>
498
- <Hit_def>Human ORFeome Gateway entry vector pENTR223-TP53, complete sequence</Hit_def>
499
- <Hit_accession>LT739496</Hit_accession>
500
- <Hit_len>3969</Hit_len>
501
- <Hit_hsps>
502
- <Hsp>
503
- <Hsp_num>1</Hsp_num>
504
- <Hsp_bit-score>222.718</Hsp_bit-score>
505
- <Hsp_score>120</Hsp_score>
506
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
507
- <Hsp_query-from>1</Hsp_query-from>
508
- <Hsp_query-to>123</Hsp_query-to>
509
- <Hsp_hit-from>923</Hsp_hit-from>
510
- <Hsp_hit-to>1045</Hsp_hit-to>
511
- <Hsp_query-frame>1</Hsp_query-frame>
512
- <Hsp_hit-frame>1</Hsp_hit-frame>
513
- <Hsp_identity>122</Hsp_identity>
514
- <Hsp_positive>122</Hsp_positive>
515
- <Hsp_gaps>0</Hsp_gaps>
516
- <Hsp_align-len>123</Hsp_align-len>
517
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
518
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
519
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
520
- </Hsp>
521
- </Hit_hsps>
522
- </Hit>
523
- <Hit>
524
- <Hit_num>18</Hit_num>
525
- <Hit_id>gi|1049010735|gb|AH002919.2|</Hit_id>
526
- <Hit_def>Homo sapiens phosphoprotein p53 (p53) gene, complete cds</Hit_def>
527
- <Hit_accession>AH002919</Hit_accession>
528
- <Hit_len>4127</Hit_len>
529
- <Hit_hsps>
530
- <Hsp>
531
- <Hsp_num>1</Hsp_num>
532
- <Hsp_bit-score>222.718</Hsp_bit-score>
533
- <Hsp_score>120</Hsp_score>
534
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
535
- <Hsp_query-from>1</Hsp_query-from>
536
- <Hsp_query-to>123</Hsp_query-to>
537
- <Hsp_hit-from>1384</Hsp_hit-from>
538
- <Hsp_hit-to>1506</Hsp_hit-to>
539
- <Hsp_query-frame>1</Hsp_query-frame>
540
- <Hsp_hit-frame>1</Hsp_hit-frame>
541
- <Hsp_identity>122</Hsp_identity>
542
- <Hsp_positive>122</Hsp_positive>
543
- <Hsp_gaps>0</Hsp_gaps>
544
- <Hsp_align-len>123</Hsp_align-len>
545
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
546
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
547
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
548
- </Hsp>
549
- </Hit_hsps>
550
- </Hit>
551
- <Hit>
552
- <Hit_num>19</Hit_num>
553
- <Hit_id>gi|1046875959|ref|XM_003749209.4|</Hit_id>
554
- <Hit_def>PREDICTED: Rattus norvegicus cellular tumor antigen p53-like (LOC100910954), mRNA</Hit_def>
555
- <Hit_accession>XM_003749209</Hit_accession>
556
- <Hit_len>894</Hit_len>
557
- <Hit_hsps>
558
- <Hsp>
559
- <Hsp_num>1</Hsp_num>
560
- <Hsp_bit-score>222.718</Hsp_bit-score>
561
- <Hsp_score>120</Hsp_score>
562
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
563
- <Hsp_query-from>1</Hsp_query-from>
564
- <Hsp_query-to>123</Hsp_query-to>
565
- <Hsp_hit-from>73</Hsp_hit-from>
566
- <Hsp_hit-to>195</Hsp_hit-to>
567
- <Hsp_query-frame>1</Hsp_query-frame>
568
- <Hsp_hit-frame>1</Hsp_hit-frame>
569
- <Hsp_identity>122</Hsp_identity>
570
- <Hsp_positive>122</Hsp_positive>
571
- <Hsp_gaps>0</Hsp_gaps>
572
- <Hsp_align-len>123</Hsp_align-len>
573
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
574
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
575
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
576
- </Hsp>
577
- </Hit_hsps>
578
- </Hit>
579
- <Hit>
580
- <Hit_num>20</Hit_num>
581
- <Hit_id>gi|1036032387|gb|AH002918.2|</Hit_id>
582
- <Hit_def>Homo sapiens phosphoprotein p53 (TP53) gene, complete cds</Hit_def>
583
- <Hit_accession>AH002918</Hit_accession>
584
- <Hit_len>3944</Hit_len>
585
- <Hit_hsps>
586
- <Hsp>
587
- <Hsp_num>1</Hsp_num>
588
- <Hsp_bit-score>222.718</Hsp_bit-score>
589
- <Hsp_score>120</Hsp_score>
590
- <Hsp_evalue>1.7448e-54</Hsp_evalue>
591
- <Hsp_query-from>1</Hsp_query-from>
592
- <Hsp_query-to>123</Hsp_query-to>
593
- <Hsp_hit-from>1392</Hsp_hit-from>
594
- <Hsp_hit-to>1514</Hsp_hit-to>
595
- <Hsp_query-frame>1</Hsp_query-frame>
596
- <Hsp_hit-frame>1</Hsp_hit-frame>
597
- <Hsp_identity>122</Hsp_identity>
598
- <Hsp_positive>122</Hsp_positive>
599
- <Hsp_gaps>0</Hsp_gaps>
600
- <Hsp_align-len>123</Hsp_align-len>
601
- <Hsp_qseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_qseq>
602
- <Hsp_hseq>TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT</Hsp_hseq>
603
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
604
- </Hsp>
605
- </Hit_hsps>
606
- </Hit>
607
- </Iteration_hits>
608
- <Iteration_stat>
609
- <Statistics>
610
- <Statistics_db-num>52085306</Statistics_db-num>
611
- <Statistics_db-len>214274604493</Statistics_db-len>
612
- <Statistics_hsp-len>32</Statistics_hsp-len>
613
- <Statistics_eff-space>19347316597791</Statistics_eff-space>
614
- <Statistics_kappa>0.46</Statistics_kappa>
615
- <Statistics_lambda>1.28</Statistics_lambda>
616
- <Statistics_entropy>0.85</Statistics_entropy>
617
- </Statistics>
618
- </Iteration_stat>
619
- </Iteration>
620
- <Iteration>
621
- <Iteration_iter-num>2</Iteration_iter-num>
622
- <Iteration_query-ID>Query_2</Iteration_query-ID>
623
- <Iteration_query-def>NM_001861.5 Homo sapiens cytochrome c oxidase subunit 4I1 (COX4I1), transcript variant 1, mRNA</Iteration_query-def>
624
- <Iteration_query-len>749</Iteration_query-len>
625
- <Iteration_hits>
626
- <Hit>
627
- <Hit_num>1</Hit_num>
628
- <Hit_id>gi|974005291|ref|NM_001861.4|</Hit_id>
629
- <Hit_def>Homo sapiens cytochrome c oxidase subunit 4I1 (COX4I1), transcript variant 1, mRNA</Hit_def>
630
- <Hit_accession>NM_001861</Hit_accession>
631
- <Hit_len>832</Hit_len>
632
- <Hit_hsps>
633
- <Hsp>
634
- <Hsp_num>1</Hsp_num>
635
- <Hsp_bit-score>1290.08</Hsp_bit-score>
636
- <Hsp_score>698</Hsp_score>
637
- <Hsp_evalue>0</Hsp_evalue>
638
- <Hsp_query-from>1</Hsp_query-from>
639
- <Hsp_query-to>698</Hsp_query-to>
640
- <Hsp_hit-from>129</Hsp_hit-from>
641
- <Hsp_hit-to>826</Hsp_hit-to>
642
- <Hsp_query-frame>1</Hsp_query-frame>
643
- <Hsp_hit-frame>1</Hsp_hit-frame>
644
- <Hsp_identity>698</Hsp_identity>
645
- <Hsp_positive>698</Hsp_positive>
646
- <Hsp_gaps>0</Hsp_gaps>
647
- <Hsp_align-len>698</Hsp_align-len>
648
- <Hsp_qseq>CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC</Hsp_qseq>
649
- <Hsp_hseq>CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC</Hsp_hseq>
650
- <Hsp_midline>||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
651
- </Hsp>
652
- </Hit_hsps>
653
- </Hit>
654
- <Hit>
655
- <Hit_num>2</Hit_num>
656
- <Hit_id>gi|1913895|gb|U90915.1|HSU90915</Hit_id>
657
- <Hit_def>Human clone 23600 cytochrome c oxidase subunit IV mRNA, complete cds</Hit_def>
658
- <Hit_accession>U90915</Hit_accession>
659
- <Hit_len>722</Hit_len>
660
- <Hit_hsps>
661
- <Hsp>
662
- <Hsp_num>1</Hsp_num>
663
- <Hsp_bit-score>1282.7</Hsp_bit-score>
664
- <Hsp_score>694</Hsp_score>
665
- <Hsp_evalue>0</Hsp_evalue>
666
- <Hsp_query-from>1</Hsp_query-from>
667
- <Hsp_query-to>697</Hsp_query-to>
668
- <Hsp_hit-from>12</Hsp_hit-from>
669
- <Hsp_hit-to>708</Hsp_hit-to>
670
- <Hsp_query-frame>1</Hsp_query-frame>
671
- <Hsp_hit-frame>1</Hsp_hit-frame>
672
- <Hsp_identity>696</Hsp_identity>
673
- <Hsp_positive>696</Hsp_positive>
674
- <Hsp_gaps>0</Hsp_gaps>
675
- <Hsp_align-len>697</Hsp_align-len>
676
- <Hsp_qseq>CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_qseq>
677
- <Hsp_hseq>CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_hseq>
678
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
679
- </Hsp>
680
- </Hit_hsps>
681
- </Hit>
682
- <Hit>
683
- <Hit_num>3</Hit_num>
684
- <Hit_id>gi|92443776|gb|BC001452.1|</Hit_id>
685
- <Hit_def>Homo sapiens cDNA clone IMAGE:3138979, **** WARNING: chimeric clone ****</Hit_def>
686
- <Hit_accession>BC001452</Hit_accession>
687
- <Hit_len>1899</Hit_len>
688
- <Hit_hsps>
689
- <Hsp>
690
- <Hsp_num>1</Hsp_num>
691
- <Hsp_bit-score>1269.77</Hsp_bit-score>
692
- <Hsp_score>687</Hsp_score>
693
- <Hsp_evalue>0</Hsp_evalue>
694
- <Hsp_query-from>8</Hsp_query-from>
695
- <Hsp_query-to>697</Hsp_query-to>
696
- <Hsp_hit-from>10</Hsp_hit-from>
697
- <Hsp_hit-to>699</Hsp_hit-to>
698
- <Hsp_query-frame>1</Hsp_query-frame>
699
- <Hsp_hit-frame>1</Hsp_hit-frame>
700
- <Hsp_identity>689</Hsp_identity>
701
- <Hsp_positive>689</Hsp_positive>
702
- <Hsp_gaps>0</Hsp_gaps>
703
- <Hsp_align-len>690</Hsp_align-len>
704
- <Hsp_qseq>GGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_qseq>
705
- <Hsp_hseq>GGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_hseq>
706
- <Hsp_midline>||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
707
- </Hsp>
708
- </Hit_hsps>
709
- </Hit>
710
- <Hit>
711
- <Hit_num>4</Hit_num>
712
- <Hit_id>gi|517251|emb|X54802.1|</Hit_id>
713
- <Hit_def>Human mRNA for cytochrome c oxidase subunit IV (EC 1.9.3.1)</Hit_def>
714
- <Hit_accession>X54802</Hit_accession>
715
- <Hit_len>696</Hit_len>
716
- <Hit_hsps>
717
- <Hsp>
718
- <Hsp_num>1</Hsp_num>
719
- <Hsp_bit-score>1269.77</Hsp_bit-score>
720
- <Hsp_score>687</Hsp_score>
721
- <Hsp_evalue>0</Hsp_evalue>
722
- <Hsp_query-from>1</Hsp_query-from>
723
- <Hsp_query-to>694</Hsp_query-to>
724
- <Hsp_hit-from>4</Hsp_hit-from>
725
- <Hsp_hit-to>696</Hsp_hit-to>
726
- <Hsp_query-frame>1</Hsp_query-frame>
727
- <Hsp_hit-frame>1</Hsp_hit-frame>
728
- <Hsp_identity>692</Hsp_identity>
729
- <Hsp_positive>692</Hsp_positive>
730
- <Hsp_gaps>1</Hsp_gaps>
731
- <Hsp_align-len>694</Hsp_align-len>
732
- <Hsp_qseq>CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTG</Hsp_qseq>
733
- <Hsp_hseq>CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCT-GCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTG</Hsp_hseq>
734
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
735
- </Hsp>
736
- </Hit_hsps>
737
- </Hit>
738
- <Hit>
739
- <Hit_num>5</Hit_num>
740
- <Hit_id>gi|38382822|gb|BC062437.1|</Hit_id>
741
- <Hit_def>Homo sapiens cytochrome c oxidase subunit IV isoform 1, mRNA (cDNA clone MGC:72016 IMAGE:6451700), complete cds</Hit_def>
742
- <Hit_accession>BC062437</Hit_accession>
743
- <Hit_len>730</Hit_len>
744
- <Hit_hsps>
745
- <Hsp>
746
- <Hsp_num>1</Hsp_num>
747
- <Hsp_bit-score>1267.92</Hsp_bit-score>
748
- <Hsp_score>686</Hsp_score>
749
- <Hsp_evalue>0</Hsp_evalue>
750
- <Hsp_query-from>1</Hsp_query-from>
751
- <Hsp_query-to>692</Hsp_query-to>
752
- <Hsp_hit-from>8</Hsp_hit-from>
753
- <Hsp_hit-to>699</Hsp_hit-to>
754
- <Hsp_query-frame>1</Hsp_query-frame>
755
- <Hsp_hit-frame>1</Hsp_hit-frame>
756
- <Hsp_identity>690</Hsp_identity>
757
- <Hsp_positive>690</Hsp_positive>
758
- <Hsp_gaps>0</Hsp_gaps>
759
- <Hsp_align-len>692</Hsp_align-len>
760
- <Hsp_qseq>CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACC</Hsp_qseq>
761
- <Hsp_hseq>CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGACTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACC</Hsp_hseq>
762
- <Hsp_midline>||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
763
- </Hsp>
764
- </Hit_hsps>
765
- </Hit>
766
- <Hit>
767
- <Hit_num>6</Hit_num>
768
- <Hit_id>gi|974005313|ref|NM_001318797.1|</Hit_id>
769
- <Hit_def>Homo sapiens cytochrome c oxidase subunit 4I1 (COX4I1), transcript variant 5, mRNA</Hit_def>
770
- <Hit_accession>NM_001318797</Hit_accession>
771
- <Hit_len>697</Hit_len>
772
- <Hit_hsps>
773
- <Hsp>
774
- <Hsp_num>1</Hsp_num>
775
- <Hsp_bit-score>1258.69</Hsp_bit-score>
776
- <Hsp_score>681</Hsp_score>
777
- <Hsp_evalue>0</Hsp_evalue>
778
- <Hsp_query-from>4</Hsp_query-from>
779
- <Hsp_query-to>698</Hsp_query-to>
780
- <Hsp_hit-from>1</Hsp_hit-from>
781
- <Hsp_hit-to>691</Hsp_hit-to>
782
- <Hsp_query-frame>1</Hsp_query-frame>
783
- <Hsp_hit-frame>1</Hsp_hit-frame>
784
- <Hsp_identity>691</Hsp_identity>
785
- <Hsp_positive>691</Hsp_positive>
786
- <Hsp_gaps>4</Hsp_gaps>
787
- <Hsp_align-len>695</Hsp_align-len>
788
- <Hsp_qseq>TTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC</Hsp_qseq>
789
- <Hsp_hseq>TTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCAT----GTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC</Hsp_hseq>
790
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
791
- </Hsp>
792
- </Hit_hsps>
793
- </Hit>
794
- <Hit>
795
- <Hit_num>7</Hit_num>
796
- <Hit_id>gi|14250513|gb|BC008704.1|</Hit_id>
797
- <Hit_def>Homo sapiens cytochrome c oxidase subunit IV isoform 1, mRNA (cDNA clone MGC:15503 IMAGE:2990066), complete cds</Hit_def>
798
- <Hit_accession>BC008704</Hit_accession>
799
- <Hit_len>718</Hit_len>
800
- <Hit_hsps>
801
- <Hsp>
802
- <Hsp_num>1</Hsp_num>
803
- <Hsp_bit-score>1256.84</Hsp_bit-score>
804
- <Hsp_score>680</Hsp_score>
805
- <Hsp_evalue>0</Hsp_evalue>
806
- <Hsp_query-from>15</Hsp_query-from>
807
- <Hsp_query-to>697</Hsp_query-to>
808
- <Hsp_hit-from>1</Hsp_hit-from>
809
- <Hsp_hit-to>683</Hsp_hit-to>
810
- <Hsp_query-frame>1</Hsp_query-frame>
811
- <Hsp_hit-frame>1</Hsp_hit-frame>
812
- <Hsp_identity>682</Hsp_identity>
813
- <Hsp_positive>682</Hsp_positive>
814
- <Hsp_gaps>0</Hsp_gaps>
815
- <Hsp_align-len>683</Hsp_align-len>
816
- <Hsp_qseq>GGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_qseq>
817
- <Hsp_hseq>GGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_hseq>
818
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
819
- </Hsp>
820
- </Hit_hsps>
821
- </Hit>
822
- <Hit>
823
- <Hit_num>8</Hit_num>
824
- <Hit_id>gi|1099162126|ref|XM_004058096.2|</Hit_id>
825
- <Hit_def>PREDICTED: Gorilla gorilla gorilla cytochrome c oxidase subunit 4 isoform 1, mitochondrial (LOC101151536), mRNA</Hit_def>
826
- <Hit_accession>XM_004058096</Hit_accession>
827
- <Hit_len>825</Hit_len>
828
- <Hit_hsps>
829
- <Hsp>
830
- <Hsp_num>1</Hsp_num>
831
- <Hsp_bit-score>1249.46</Hsp_bit-score>
832
- <Hsp_score>676</Hsp_score>
833
- <Hsp_evalue>0</Hsp_evalue>
834
- <Hsp_query-from>1</Hsp_query-from>
835
- <Hsp_query-to>697</Hsp_query-to>
836
- <Hsp_hit-from>129</Hsp_hit-from>
837
- <Hsp_hit-to>825</Hsp_hit-to>
838
- <Hsp_query-frame>1</Hsp_query-frame>
839
- <Hsp_hit-frame>1</Hsp_hit-frame>
840
- <Hsp_identity>690</Hsp_identity>
841
- <Hsp_positive>690</Hsp_positive>
842
- <Hsp_gaps>0</Hsp_gaps>
843
- <Hsp_align-len>697</Hsp_align-len>
844
- <Hsp_qseq>CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_qseq>
845
- <Hsp_hseq>CTCTTCCGGTCGCGGGACACCGGGCGTAGAGGGCGGTCGCGGCGGGCAGTGGCAGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCCATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACTACCCCTTGCCCGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCTCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_hseq>
846
- <Hsp_midline>|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
847
- </Hsp>
848
- </Hit_hsps>
849
- </Hit>
850
- <Hit>
851
- <Hit_num>9</Hit_num>
852
- <Hit_id>gi|39645193|gb|BC021236.2|</Hit_id>
853
- <Hit_def>Homo sapiens cytochrome c oxidase subunit IV isoform 1, mRNA (cDNA clone MGC:15331 IMAGE:4309698), complete cds</Hit_def>
854
- <Hit_accession>BC021236</Hit_accession>
855
- <Hit_len>717</Hit_len>
856
- <Hit_hsps>
857
- <Hsp>
858
- <Hsp_num>1</Hsp_num>
859
- <Hsp_bit-score>1243.92</Hsp_bit-score>
860
- <Hsp_score>673</Hsp_score>
861
- <Hsp_evalue>0</Hsp_evalue>
862
- <Hsp_query-from>22</Hsp_query-from>
863
- <Hsp_query-to>697</Hsp_query-to>
864
- <Hsp_hit-from>1</Hsp_hit-from>
865
- <Hsp_hit-to>676</Hsp_hit-to>
866
- <Hsp_query-frame>1</Hsp_query-frame>
867
- <Hsp_hit-frame>1</Hsp_hit-frame>
868
- <Hsp_identity>675</Hsp_identity>
869
- <Hsp_positive>675</Hsp_positive>
870
- <Hsp_gaps>0</Hsp_gaps>
871
- <Hsp_align-len>676</Hsp_align-len>
872
- <Hsp_qseq>GGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_qseq>
873
- <Hsp_hseq>GGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_hseq>
874
- <Hsp_midline>||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
875
- </Hsp>
876
- </Hit_hsps>
877
- </Hit>
878
- <Hit>
879
- <Hit_num>10</Hit_num>
880
- <Hit_id>gi|197098965|ref|NM_001133005.1|</Hit_id>
881
- <Hit_def>Pongo abelii cytochrome c oxidase subunit IV isoform 1 (COX4I1), mRNA &gt;gi|55731627|emb|CR860394.1| Pongo abelii mRNA; cDNA DKFZp459N0929 (from clone DKFZp459N0929)</Hit_def>
882
- <Hit_accession>NM_001133005</Hit_accession>
883
- <Hit_len>730</Hit_len>
884
- <Hit_hsps>
885
- <Hsp>
886
- <Hsp_num>1</Hsp_num>
887
- <Hsp_bit-score>1227.3</Hsp_bit-score>
888
- <Hsp_score>664</Hsp_score>
889
- <Hsp_evalue>0</Hsp_evalue>
890
- <Hsp_query-from>1</Hsp_query-from>
891
- <Hsp_query-to>697</Hsp_query-to>
892
- <Hsp_hit-from>18</Hsp_hit-from>
893
- <Hsp_hit-to>714</Hsp_hit-to>
894
- <Hsp_query-frame>1</Hsp_query-frame>
895
- <Hsp_hit-frame>1</Hsp_hit-frame>
896
- <Hsp_identity>686</Hsp_identity>
897
- <Hsp_positive>686</Hsp_positive>
898
- <Hsp_gaps>0</Hsp_gaps>
899
- <Hsp_align-len>697</Hsp_align-len>
900
- <Hsp_qseq>CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_qseq>
901
- <Hsp_hseq>CTCTTCCGGTCGCGGGACACCGGGCGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCACATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCTCAGCTTATGTGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGCTTCACCGCGCTCATTATCATGTGGCAGAAGCGCCATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAATGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATACAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_hseq>
902
- <Hsp_midline>|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
903
- </Hsp>
904
- </Hit_hsps>
905
- </Hit>
906
- <Hit>
907
- <Hit_num>11</Hit_num>
908
- <Hit_id>gi|1311702|gb|M21575.1|HUMCOX4A</Hit_id>
909
- <Hit_def>Human cytochrome c oxidase COX subunit IV (COX IV) mRNA, complete cds</Hit_def>
910
- <Hit_accession>M21575</Hit_accession>
911
- <Hit_len>669</Hit_len>
912
- <Hit_hsps>
913
- <Hsp>
914
- <Hsp_num>1</Hsp_num>
915
- <Hsp_bit-score>1205.14</Hsp_bit-score>
916
- <Hsp_score>652</Hsp_score>
917
- <Hsp_evalue>0</Hsp_evalue>
918
- <Hsp_query-from>37</Hsp_query-from>
919
- <Hsp_query-to>694</Hsp_query-to>
920
- <Hsp_hit-from>12</Hsp_hit-from>
921
- <Hsp_hit-to>669</Hsp_hit-to>
922
- <Hsp_query-frame>1</Hsp_query-frame>
923
- <Hsp_hit-frame>1</Hsp_hit-frame>
924
- <Hsp_identity>656</Hsp_identity>
925
- <Hsp_positive>656</Hsp_positive>
926
- <Hsp_gaps>0</Hsp_gaps>
927
- <Hsp_align-len>658</Hsp_align-len>
928
- <Hsp_qseq>TCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTG</Hsp_qseq>
929
- <Hsp_hseq>TCGCGGCGGGCGGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTG</Hsp_hseq>
930
- <Hsp_midline>||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
931
- </Hsp>
932
- </Hit_hsps>
933
- </Hit>
934
- <Hit>
935
- <Hit_num>12</Hit_num>
936
- <Hit_id>gi|353681772|ref|NM_001251915.1|</Hit_id>
937
- <Hit_def>Pan troglodytes cytochrome c oxidase subunit 4I1 (COX4I1), mRNA</Hit_def>
938
- <Hit_accession>NM_001251915</Hit_accession>
939
- <Hit_len>671</Hit_len>
940
- <Hit_hsps>
941
- <Hsp>
942
- <Hsp_num>1</Hsp_num>
943
- <Hsp_bit-score>1199.6</Hsp_bit-score>
944
- <Hsp_score>649</Hsp_score>
945
- <Hsp_evalue>0</Hsp_evalue>
946
- <Hsp_query-from>1</Hsp_query-from>
947
- <Hsp_query-to>673</Hsp_query-to>
948
- <Hsp_hit-from>5</Hsp_hit-from>
949
- <Hsp_hit-to>671</Hsp_hit-to>
950
- <Hsp_query-frame>1</Hsp_query-frame>
951
- <Hsp_hit-frame>1</Hsp_hit-frame>
952
- <Hsp_identity>666</Hsp_identity>
953
- <Hsp_positive>666</Hsp_positive>
954
- <Hsp_gaps>6</Hsp_gaps>
955
- <Hsp_align-len>673</Hsp_align-len>
956
- <Hsp_qseq>CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCT</Hsp_qseq>
957
- <Hsp_hseq>CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCG------CCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCT</Hsp_hseq>
958
- <Hsp_midline>||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
959
- </Hsp>
960
- </Hit_hsps>
961
- </Hit>
962
- <Hit>
963
- <Hit_num>13</Hit_num>
964
- <Hit_id>gi|675760952|ref|XM_003820846.2|</Hit_id>
965
- <Hit_def>PREDICTED: Pan paniscus cytochrome c oxidase subunit 4 isoform 1, mitochondrial (LOC100969890), transcript variant X2, mRNA</Hit_def>
966
- <Hit_accession>XM_003820846</Hit_accession>
967
- <Hit_len>649</Hit_len>
968
- <Hit_hsps>
969
- <Hsp>
970
- <Hsp_num>1</Hsp_num>
971
- <Hsp_bit-score>1194.06</Hsp_bit-score>
972
- <Hsp_score>646</Hsp_score>
973
- <Hsp_evalue>0</Hsp_evalue>
974
- <Hsp_query-from>49</Hsp_query-from>
975
- <Hsp_query-to>697</Hsp_query-to>
976
- <Hsp_hit-from>1</Hsp_hit-from>
977
- <Hsp_hit-to>649</Hsp_hit-to>
978
- <Hsp_query-frame>1</Hsp_query-frame>
979
- <Hsp_hit-frame>1</Hsp_hit-frame>
980
- <Hsp_identity>648</Hsp_identity>
981
- <Hsp_positive>648</Hsp_positive>
982
- <Hsp_gaps>0</Hsp_gaps>
983
- <Hsp_align-len>649</Hsp_align-len>
984
- <Hsp_qseq>GTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_qseq>
985
- <Hsp_hseq>GTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_hseq>
986
- <Hsp_midline>||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
987
- </Hsp>
988
- </Hit_hsps>
989
- </Hit>
990
- <Hit>
991
- <Hit_num>14</Hit_num>
992
- <Hit_id>gi|974005292|ref|NM_001318786.1|</Hit_id>
993
- <Hit_def>Homo sapiens cytochrome c oxidase subunit 4I1 (COX4I1), transcript variant 2, mRNA</Hit_def>
994
- <Hit_accession>NM_001318786</Hit_accession>
995
- <Hit_len>853</Hit_len>
996
- <Hit_hsps>
997
- <Hsp>
998
- <Hsp_num>1</Hsp_num>
999
- <Hsp_bit-score>1192.21</Hsp_bit-score>
1000
- <Hsp_score>645</Hsp_score>
1001
- <Hsp_evalue>0</Hsp_evalue>
1002
- <Hsp_query-from>1</Hsp_query-from>
1003
- <Hsp_query-to>698</Hsp_query-to>
1004
- <Hsp_hit-from>129</Hsp_hit-from>
1005
- <Hsp_hit-to>847</Hsp_hit-to>
1006
- <Hsp_query-frame>1</Hsp_query-frame>
1007
- <Hsp_hit-frame>1</Hsp_hit-frame>
1008
- <Hsp_identity>698</Hsp_identity>
1009
- <Hsp_positive>698</Hsp_positive>
1010
- <Hsp_gaps>21</Hsp_gaps>
1011
- <Hsp_align-len>719</Hsp_align-len>
1012
- <Hsp_qseq>CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGG---------------------CAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC</Hsp_qseq>
1013
- <Hsp_hseq>CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGGTGTACATTTTTATCTTTCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC</Hsp_hseq>
1014
- <Hsp_midline>||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
1015
- </Hsp>
1016
- </Hit_hsps>
1017
- </Hit>
1018
- <Hit>
1019
- <Hit_num>15</Hit_num>
1020
- <Hit_id>gi|1370467948|ref|XM_024450156.1|</Hit_id>
1021
- <Hit_def>PREDICTED: Homo sapiens cytochrome c oxidase subunit 4I1 (COX4I1), transcript variant X1, mRNA</Hit_def>
1022
- <Hit_accession>XM_024450156</Hit_accession>
1023
- <Hit_len>764</Hit_len>
1024
- <Hit_hsps>
1025
- <Hsp>
1026
- <Hsp_num>1</Hsp_num>
1027
- <Hsp_bit-score>1186.67</Hsp_bit-score>
1028
- <Hsp_score>642</Hsp_score>
1029
- <Hsp_evalue>0</Hsp_evalue>
1030
- <Hsp_query-from>56</Hsp_query-from>
1031
- <Hsp_query-to>697</Hsp_query-to>
1032
- <Hsp_hit-from>123</Hsp_hit-from>
1033
- <Hsp_hit-to>764</Hsp_hit-to>
1034
- <Hsp_query-frame>1</Hsp_query-frame>
1035
- <Hsp_hit-frame>1</Hsp_hit-frame>
1036
- <Hsp_identity>642</Hsp_identity>
1037
- <Hsp_positive>642</Hsp_positive>
1038
- <Hsp_gaps>0</Hsp_gaps>
1039
- <Hsp_align-len>642</Hsp_align-len>
1040
- <Hsp_qseq>CAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_qseq>
1041
- <Hsp_hseq>CAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_hseq>
1042
- <Hsp_midline>||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
1043
- </Hsp>
1044
- </Hit_hsps>
1045
- </Hit>
1046
- <Hit>
1047
- <Hit_num>16</Hit_num>
1048
- <Hit_id>gi|1367187339|ref|XM_009431356.3|</Hit_id>
1049
- <Hit_def>PREDICTED: Pan troglodytes cytochrome c oxidase subunit 4I1 (COX4I1), transcript variant X1, mRNA</Hit_def>
1050
- <Hit_accession>XM_009431356</Hit_accession>
1051
- <Hit_len>765</Hit_len>
1052
- <Hit_hsps>
1053
- <Hsp>
1054
- <Hsp_num>1</Hsp_num>
1055
- <Hsp_bit-score>1181.13</Hsp_bit-score>
1056
- <Hsp_score>639</Hsp_score>
1057
- <Hsp_evalue>0</Hsp_evalue>
1058
- <Hsp_query-from>56</Hsp_query-from>
1059
- <Hsp_query-to>697</Hsp_query-to>
1060
- <Hsp_hit-from>124</Hsp_hit-from>
1061
- <Hsp_hit-to>765</Hsp_hit-to>
1062
- <Hsp_query-frame>1</Hsp_query-frame>
1063
- <Hsp_hit-frame>1</Hsp_hit-frame>
1064
- <Hsp_identity>641</Hsp_identity>
1065
- <Hsp_positive>641</Hsp_positive>
1066
- <Hsp_gaps>0</Hsp_gaps>
1067
- <Hsp_align-len>642</Hsp_align-len>
1068
- <Hsp_qseq>CAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_qseq>
1069
- <Hsp_hseq>CAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_hseq>
1070
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
1071
- </Hsp>
1072
- </Hit_hsps>
1073
- </Hit>
1074
- <Hit>
1075
- <Hit_num>17</Hit_num>
1076
- <Hit_id>gi|931598471|ref|XM_003820848.3|</Hit_id>
1077
- <Hit_def>PREDICTED: Pan paniscus cytochrome c oxidase subunit 4 isoform 1, mitochondrial (LOC100969890), transcript variant X1, mRNA</Hit_def>
1078
- <Hit_accession>XM_003820848</Hit_accession>
1079
- <Hit_len>765</Hit_len>
1080
- <Hit_hsps>
1081
- <Hsp>
1082
- <Hsp_num>1</Hsp_num>
1083
- <Hsp_bit-score>1181.13</Hsp_bit-score>
1084
- <Hsp_score>639</Hsp_score>
1085
- <Hsp_evalue>0</Hsp_evalue>
1086
- <Hsp_query-from>56</Hsp_query-from>
1087
- <Hsp_query-to>697</Hsp_query-to>
1088
- <Hsp_hit-from>124</Hsp_hit-from>
1089
- <Hsp_hit-to>765</Hsp_hit-to>
1090
- <Hsp_query-frame>1</Hsp_query-frame>
1091
- <Hsp_hit-frame>1</Hsp_hit-frame>
1092
- <Hsp_identity>641</Hsp_identity>
1093
- <Hsp_positive>641</Hsp_positive>
1094
- <Hsp_gaps>0</Hsp_gaps>
1095
- <Hsp_align-len>642</Hsp_align-len>
1096
- <Hsp_qseq>CAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_qseq>
1097
- <Hsp_hseq>CAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_hseq>
1098
- <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
1099
- </Hsp>
1100
- </Hit_hsps>
1101
- </Hit>
1102
- <Hit>
1103
- <Hit_num>18</Hit_num>
1104
- <Hit_id>gi|820976031|ref|XM_003272504.3|</Hit_id>
1105
- <Hit_def>PREDICTED: Nomascus leucogenys cytochrome c oxidase subunit 4 isoform 1, mitochondrial (LOC100597359), transcript variant X2, mRNA</Hit_def>
1106
- <Hit_accession>XM_003272504</Hit_accession>
1107
- <Hit_len>1006</Hit_len>
1108
- <Hit_hsps>
1109
- <Hsp>
1110
- <Hsp_num>1</Hsp_num>
1111
- <Hsp_bit-score>1160.82</Hsp_bit-score>
1112
- <Hsp_score>628</Hsp_score>
1113
- <Hsp_evalue>0</Hsp_evalue>
1114
- <Hsp_query-from>1</Hsp_query-from>
1115
- <Hsp_query-to>697</Hsp_query-to>
1116
- <Hsp_hit-from>316</Hsp_hit-from>
1117
- <Hsp_hit-to>1006</Hsp_hit-to>
1118
- <Hsp_query-frame>1</Hsp_query-frame>
1119
- <Hsp_hit-frame>1</Hsp_hit-frame>
1120
- <Hsp_identity>675</Hsp_identity>
1121
- <Hsp_positive>675</Hsp_positive>
1122
- <Hsp_gaps>6</Hsp_gaps>
1123
- <Hsp_align-len>697</Hsp_align-len>
1124
- <Hsp_qseq>CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_qseq>
1125
- <Hsp_hseq>CTCTTCCGGTCGCGGGACACCCGGTGTAGAGGGCGGTCGCGGCGGGCAGCGACGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAGTTTCCACCTCTGTGTGTGTACGAGCACATGAAAGTGTCATGAAGAGCGAAGACTTTTCGCTCCCAGCTTATGTGGATCGGCGTGACCATCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCGCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCCAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGCTTCACCGCGCTCATTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAACCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCG------CCTGCGCCTGGCTCTGTCACCACCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_hseq>
1126
- <Hsp_midline>||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
1127
- </Hsp>
1128
- </Hit_hsps>
1129
- </Hit>
1130
- <Hit>
1131
- <Hit_num>19</Hit_num>
1132
- <Hit_id>gi|180934|gb|M34600.1|HUMCOX4AA</Hit_id>
1133
- <Hit_def>Human cytochrome c oxidase subunit IV (COX4) mRNA, complete cds</Hit_def>
1134
- <Hit_accession>M34600</Hit_accession>
1135
- <Hit_len>634</Hit_len>
1136
- <Hit_hsps>
1137
- <Hsp>
1138
- <Hsp_num>1</Hsp_num>
1139
- <Hsp_bit-score>1160.82</Hsp_bit-score>
1140
- <Hsp_score>628</Hsp_score>
1141
- <Hsp_evalue>0</Hsp_evalue>
1142
- <Hsp_query-from>60</Hsp_query-from>
1143
- <Hsp_query-to>694</Hsp_query-to>
1144
- <Hsp_hit-from>1</Hsp_hit-from>
1145
- <Hsp_hit-to>634</Hsp_hit-to>
1146
- <Hsp_query-frame>1</Hsp_query-frame>
1147
- <Hsp_hit-frame>1</Hsp_hit-frame>
1148
- <Hsp_identity>633</Hsp_identity>
1149
- <Hsp_positive>633</Hsp_positive>
1150
- <Hsp_gaps>1</Hsp_gaps>
1151
- <Hsp_align-len>635</Hsp_align-len>
1152
- <Hsp_qseq>ATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTG</Hsp_qseq>
1153
- <Hsp_hseq>ATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCT-GCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTG</Hsp_hseq>
1154
- <Hsp_midline>||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
1155
- </Hsp>
1156
- </Hit_hsps>
1157
- </Hit>
1158
- <Hit>
1159
- <Hit_num>20</Hit_num>
1160
- <Hit_id>gi|820976036|ref|XM_012505370.1|</Hit_id>
1161
- <Hit_def>PREDICTED: Nomascus leucogenys cytochrome c oxidase subunit 4 isoform 1, mitochondrial (LOC100597359), transcript variant X6, mRNA</Hit_def>
1162
- <Hit_accession>XM_012505370</Hit_accession>
1163
- <Hit_len>684</Hit_len>
1164
- <Hit_hsps>
1165
- <Hsp>
1166
- <Hsp_num>1</Hsp_num>
1167
- <Hsp_bit-score>1129.42</Hsp_bit-score>
1168
- <Hsp_score>611</Hsp_score>
1169
- <Hsp_evalue>0</Hsp_evalue>
1170
- <Hsp_query-from>4</Hsp_query-from>
1171
- <Hsp_query-to>697</Hsp_query-to>
1172
- <Hsp_hit-from>1</Hsp_hit-from>
1173
- <Hsp_hit-to>684</Hsp_hit-to>
1174
- <Hsp_query-frame>1</Hsp_query-frame>
1175
- <Hsp_hit-frame>1</Hsp_hit-frame>
1176
- <Hsp_identity>668</Hsp_identity>
1177
- <Hsp_positive>668</Hsp_positive>
1178
- <Hsp_gaps>10</Hsp_gaps>
1179
- <Hsp_align-len>694</Hsp_align-len>
1180
- <Hsp_qseq>TTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_qseq>
1181
- <Hsp_hseq>TTCCGGTCGCGGGACACCCGGTGTAGAGGGCGGTCGCGGCGGGCAGCGACGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAGTTTCCACCTCTGTGTGTGTACGAGCACAT----GTGTCATGAAGAGCGAAGACTTTTCGCTCCCAGCTTATGTGGATCGGCGTGACCATCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCGCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCCAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGCTTCACCGCGCTCATTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAACCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCG------CCTGCGCCTGGCTCTGTCACCACCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA</Hsp_hseq>
1182
- <Hsp_midline>|||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
1183
- </Hsp>
1184
- </Hit_hsps>
1185
- </Hit>
1186
- </Iteration_hits>
1187
- <Iteration_stat>
1188
- <Statistics>
1189
- <Statistics_db-num>52085306</Statistics_db-num>
1190
- <Statistics_db-len>214274604493</Statistics_db-len>
1191
- <Statistics_hsp-len>35</Statistics_hsp-len>
1192
- <Statistics_eff-space>151690455811062</Statistics_eff-space>
1193
- <Statistics_kappa>0.46</Statistics_kappa>
1194
- <Statistics_lambda>1.28</Statistics_lambda>
1195
- <Statistics_entropy>0.85</Statistics_entropy>
1196
- </Statistics>
1197
- </Iteration_stat>
1198
- </Iteration>
1199
- </BlastOutput_iterations>
1200
- </BlastOutput>
1201
-