sequenceserver 2.0.0.rc7 → 2.0.0.rc8

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Files changed (530) hide show
  1. checksums.yaml +4 -4
  2. data/bin/chromedriver +0 -0
  3. data/bin/geckodriver +0 -0
  4. data/bin/sequenceserver +31 -4
  5. data/lib/sequenceserver.rb +6 -1
  6. data/lib/sequenceserver/database.rb +7 -42
  7. data/lib/sequenceserver/exceptions.rb +14 -0
  8. data/lib/sequenceserver/makeblastdb.rb +121 -41
  9. data/lib/sequenceserver/routes.rb +1 -1
  10. data/lib/sequenceserver/version.rb +1 -1
  11. data/public/css/sequenceserver.css +8 -2
  12. data/public/css/sequenceserver.min.css +1 -1
  13. data/public/js/jquery_world.js +1 -1
  14. data/public/js/report.js +1 -2
  15. data/public/js/search.js +40 -18
  16. data/public/js/sidebar.js +50 -26
  17. data/public/sequenceserver-report.min.js +17 -17
  18. data/public/sequenceserver-search.min.js +2 -2
  19. data/views/layout.erb +1 -1
  20. data/views/report.erb +1 -1
  21. data/views/search.erb +1 -1
  22. metadata +4 -510
  23. data/.bootstrap/config.json +0 -433
  24. data/.codeclimate.yml +0 -31
  25. data/.csslintrc +0 -2
  26. data/.dockerignore +0 -1
  27. data/.eslintignore +0 -1
  28. data/.eslintrc.json +0 -36
  29. data/.gitignore +0 -56
  30. data/.mailmap +0 -5
  31. data/.rspec +0 -3
  32. data/.rubocop.yml +0 -61
  33. data/.travis.yml +0 -74
  34. data/AppImage/recipe.yml +0 -15
  35. data/AppImage/sequenceserver.desktop +0 -8
  36. data/AppImage/sequenceserver.png +0 -0
  37. data/AppImage/sequenceserver.sh +0 -16
  38. data/Dockerfile +0 -25
  39. data/LICENSE.txt +0 -661
  40. data/LICENSE/Apache.txt +0 -176
  41. data/LICENSE/d3.txt +0 -26
  42. data/README.md +0 -161
  43. data/package.json +0 -48
  44. data/public/vendor/.dependencies.json +0 -18
  45. data/public/vendor/.loaderversions +0 -1
  46. data/public/vendor/github/components/jquery@2.1.4/.gitignore +0 -1
  47. data/public/vendor/github/components/jquery@2.1.4/.jspm-hash +0 -1
  48. data/public/vendor/github/components/jquery@2.1.4/.jspm.json +0 -37
  49. data/public/vendor/github/components/jqueryui@1.11.4/.gitignore +0 -4
  50. data/public/vendor/github/components/jqueryui@1.11.4/.jspm-hash +0 -1
  51. data/public/vendor/github/components/jqueryui@1.11.4/.jspm.json +0 -136
  52. data/public/vendor/github/components/jqueryui@1.11.4/ui/.jshintrc +0 -24
  53. data/public/vendor/github/jspm/nodelibs-buffer@0.1.0/.jspm-hash +0 -1
  54. data/public/vendor/github/jspm/nodelibs-buffer@0.1.0/.jspm.json +0 -10
  55. data/public/vendor/github/jspm/nodelibs-events@0.1.1/.jspm-hash +0 -1
  56. data/public/vendor/github/jspm/nodelibs-events@0.1.1/.jspm.json +0 -10
  57. data/public/vendor/github/jspm/nodelibs-fs@0.1.2/.jspm-hash +0 -1
  58. data/public/vendor/github/jspm/nodelibs-module@0.1.0/.jspm-hash +0 -1
  59. data/public/vendor/github/jspm/nodelibs-module@0.1.0/.jspm.json +0 -3
  60. data/public/vendor/github/jspm/nodelibs-path@0.1.0/.jspm-hash +0 -1
  61. data/public/vendor/github/jspm/nodelibs-path@0.1.0/.jspm.json +0 -10
  62. data/public/vendor/github/jspm/nodelibs-process@0.1.1/.jspm-hash +0 -1
  63. data/public/vendor/github/jspm/nodelibs-stream@0.1.0/.jspm-hash +0 -1
  64. data/public/vendor/github/jspm/nodelibs-stream@0.1.0/.jspm.json +0 -10
  65. data/public/vendor/github/jspm/nodelibs-util@0.1.0/.jspm-hash +0 -1
  66. data/public/vendor/github/jspm/nodelibs-util@0.1.0/.jspm.json +0 -10
  67. data/public/vendor/github/mbostock/d3@3.5.6/.jspm-hash +0 -1
  68. data/public/vendor/github/mbostock/d3@3.5.6/.jspm.json +0 -76
  69. data/public/vendor/github/nicgirault/circosJs@1.7.0/.gitignore +0 -10
  70. data/public/vendor/github/nicgirault/circosJs@1.7.0/.jspm-hash +0 -1
  71. data/public/vendor/github/systemjs/plugin-css@0.1.15/.gitignore +0 -1
  72. data/public/vendor/github/systemjs/plugin-css@0.1.15/.jspm-hash +0 -1
  73. data/public/vendor/github/systemjs/plugin-css@0.1.15/.jspm.json +0 -4
  74. data/public/vendor/github/systemjs/plugin-json@0.1.0/.jspm-hash +0 -1
  75. data/public/vendor/github/twbs/bootstrap@3.3.5/.jspm-hash +0 -1
  76. data/public/vendor/github/twbs/bootstrap@3.3.5/.jspm.json +0 -100
  77. data/public/vendor/npm/amdefine@1.0.0/.jspm-hash +0 -1
  78. data/public/vendor/npm/amdefine@1.0.0/.jspm.json +0 -55
  79. data/public/vendor/npm/babel-core@5.8.23/.jspm-hash +0 -1
  80. data/public/vendor/npm/babel-runtime@5.8.20/.jspm-hash +0 -1
  81. data/public/vendor/npm/babel-runtime@5.8.20/.npmignore +0 -2
  82. data/public/vendor/npm/base62@0.1.1/.jspm-hash +0 -1
  83. data/public/vendor/npm/base62@0.1.1/.jspm.json +0 -49
  84. data/public/vendor/npm/base62@0.1.1/.travis.yml +0 -4
  85. data/public/vendor/npm/base64-js@0.0.8/.jspm-hash +0 -1
  86. data/public/vendor/npm/base64-js@0.0.8/.jspm.json +0 -77
  87. data/public/vendor/npm/base64-js@0.0.8/.travis.yml +0 -5
  88. data/public/vendor/npm/buffer@3.4.3/.jspm-hash +0 -1
  89. data/public/vendor/npm/buffer@3.4.3/.jspm.json +0 -105
  90. data/public/vendor/npm/buffer@3.4.3/.npmignore +0 -1
  91. data/public/vendor/npm/buffer@3.4.3/.travis.yml +0 -8
  92. data/public/vendor/npm/buffer@3.4.3/.zuul.yml +0 -20
  93. data/public/vendor/npm/core-js@1.1.2/.eslintrc +0 -36
  94. data/public/vendor/npm/core-js@1.1.2/.gitattributes +0 -1
  95. data/public/vendor/npm/core-js@1.1.2/.jspm-hash +0 -1
  96. data/public/vendor/npm/core-js@1.1.2/.npmignore +0 -10
  97. data/public/vendor/npm/core-js@1.1.2/.travis.yml +0 -3
  98. data/public/vendor/npm/core-util-is@1.0.1/.jspm-hash +0 -1
  99. data/public/vendor/npm/core-util-is@1.0.1/.jspm.json +0 -58
  100. data/public/vendor/npm/envify@3.4.0/.jspm-hash +0 -1
  101. data/public/vendor/npm/envify@3.4.0/.jspm.json +0 -72
  102. data/public/vendor/npm/envify@3.4.0/.npmignore +0 -2
  103. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/.jspm-hash +0 -1
  104. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/.jspm.json +0 -102
  105. data/public/vendor/npm/events@1.0.2/.jspm-hash +0 -1
  106. data/public/vendor/npm/events@1.0.2/.jspm.json +0 -67
  107. data/public/vendor/npm/events@1.0.2/.npmignore +0 -1
  108. data/public/vendor/npm/events@1.0.2/.travis.yml +0 -7
  109. data/public/vendor/npm/events@1.0.2/.zuul.yml +0 -12
  110. data/public/vendor/npm/font-awesome@4.4.0/.jspm-hash +0 -1
  111. data/public/vendor/npm/font-awesome@4.4.0/.jspm.json +0 -81
  112. data/public/vendor/npm/font-awesome@4.4.0/.npmignore +0 -42
  113. data/public/vendor/npm/ieee754@1.1.6/.jspm-hash +0 -1
  114. data/public/vendor/npm/ieee754@1.1.6/.jspm.json +0 -70
  115. data/public/vendor/npm/ieee754@1.1.6/.travis.yml +0 -7
  116. data/public/vendor/npm/ieee754@1.1.6/.zuul.yml +0 -20
  117. data/public/vendor/npm/inherits@2.0.1/.jspm-hash +0 -1
  118. data/public/vendor/npm/inherits@2.0.1/.jspm.json +0 -60
  119. data/public/vendor/npm/is-array@1.0.1/.jepso-ci.json +0 -3
  120. data/public/vendor/npm/is-array@1.0.1/.jspm-hash +0 -1
  121. data/public/vendor/npm/is-array@1.0.1/.jspm.json +0 -42
  122. data/public/vendor/npm/is-array@1.0.1/.npmignore +0 -0
  123. data/public/vendor/npm/isarray@0.0.1/.jspm-hash +0 -1
  124. data/public/vendor/npm/isarray@0.0.1/.jspm.json +0 -51
  125. data/public/vendor/npm/jstransform@10.1.0/.jshintrc +0 -28
  126. data/public/vendor/npm/jstransform@10.1.0/.jspm-hash +0 -1
  127. data/public/vendor/npm/jstransform@10.1.0/.jspm.json +0 -95
  128. data/public/vendor/npm/jstransform@10.1.0/.npmignore +0 -4
  129. data/public/vendor/npm/jstransform@10.1.0/.travis.yml +0 -8
  130. data/public/vendor/npm/path-browserify@0.0.0/.jspm-hash +0 -1
  131. data/public/vendor/npm/path-browserify@0.0.0/.jspm.json +0 -56
  132. data/public/vendor/npm/process@0.10.1/.jspm-hash +0 -1
  133. data/public/vendor/npm/react@0.13.3/.jspm-hash +0 -1
  134. data/public/vendor/npm/react@0.13.3/.jspm.json +0 -77
  135. data/public/vendor/npm/readable-stream@1.1.13/.jspm-hash +0 -1
  136. data/public/vendor/npm/readable-stream@1.1.13/.jspm.json +0 -95
  137. data/public/vendor/npm/readable-stream@1.1.13/.npmignore +0 -5
  138. data/public/vendor/npm/source-map@0.1.31/.jspm-hash +0 -1
  139. data/public/vendor/npm/source-map@0.1.31/.jspm.json +0 -133
  140. data/public/vendor/npm/source-map@0.1.31/.npmignore +0 -2
  141. data/public/vendor/npm/source-map@0.1.31/.travis.yml +0 -4
  142. data/public/vendor/npm/stream-browserify@1.0.0/.jspm-hash +0 -1
  143. data/public/vendor/npm/stream-browserify@1.0.0/.jspm.json +0 -77
  144. data/public/vendor/npm/stream-browserify@1.0.0/.travis.yml +0 -4
  145. data/public/vendor/npm/string_decoder@0.10.31/.jspm-hash +0 -1
  146. data/public/vendor/npm/string_decoder@0.10.31/.jspm.json +0 -58
  147. data/public/vendor/npm/string_decoder@0.10.31/.npmignore +0 -2
  148. data/public/vendor/npm/through@2.3.8/.jspm-hash +0 -1
  149. data/public/vendor/npm/through@2.3.8/.jspm.json +0 -72
  150. data/public/vendor/npm/through@2.3.8/.travis.yml +0 -5
  151. data/public/vendor/npm/underscore@1.8.3/.jspm-hash +0 -1
  152. data/public/vendor/npm/underscore@1.8.3/.jspm.json +0 -74
  153. data/public/vendor/npm/util@0.10.3/.jspm-hash +0 -1
  154. data/public/vendor/npm/util@0.10.3/.jspm.json +0 -58
  155. data/public/vendor/npm/util@0.10.3/.npmignore +0 -1
  156. data/public/vendor/npm/util@0.10.3/.travis.yml +0 -8
  157. data/public/vendor/npm/util@0.10.3/.zuul.yml +0 -10
  158. data/public/vendor/npm/webshim@1.15.8/.gitattributes +0 -12
  159. data/public/vendor/npm/webshim@1.15.8/.jspm-hash +0 -1
  160. data/public/vendor/npm/webshim@1.15.8/.jspm.json +0 -92
  161. data/public/vendor/npm/webshim@1.15.8/.npmignore +0 -16
  162. data/public/vendor/npm/webshim@1.15.8/.project +0 -12
  163. data/public/vendor/npm/webshim@1.15.8/demos/demos/filereader/upload/.keep +0 -0
  164. data/sequenceserver.gemspec +0 -55
  165. data/spec/blast_versions/blast_2.2.30/blast_2.2.30_spec.rb +0 -228
  166. data/spec/blast_versions/blast_2.2.30/import_spec_capybara_local_2.2.30.rb +0 -583
  167. data/spec/blast_versions/blast_2.2.31/blast_2.2.31_spec.rb +0 -228
  168. data/spec/blast_versions/blast_2.2.31/import_spec_capybara_local_2.2.31.rb +0 -587
  169. data/spec/blast_versions/blast_2.3.0/blast_2.3.0_spec.rb +0 -229
  170. data/spec/blast_versions/blast_2.3.0/import_spec_capybara_local_2.3.0.rb +0 -587
  171. data/spec/blast_versions/blast_2.4.0/blast_2.4.0_spec.rb +0 -228
  172. data/spec/blast_versions/blast_2.4.0/import_spec_capybara_local_2.4.0.rb +0 -588
  173. data/spec/blast_versions/blast_2.5.0/blast_2.5.0_spec.rb +0 -228
  174. data/spec/blast_versions/blast_2.5.0/import_spec_capybara_local_2.5.0.rb +0 -587
  175. data/spec/blast_versions/blast_2.6.0/blast_2.6.0_spec.rb +0 -228
  176. data/spec/blast_versions/blast_2.6.0/import_spec_capybara_local_2.6.0.rb +0 -587
  177. data/spec/blast_versions/blast_2.7.1/blast_2.7.1_spec.rb +0 -228
  178. data/spec/blast_versions/blast_2.7.1/import_spec_capybara_local_2.7.1.rb +0 -587
  179. data/spec/blast_versions/blast_2.8.1/blast_2.8.1_spec.rb +0 -228
  180. data/spec/blast_versions/blast_2.8.1/import_spec_capybara_local_2.8.1.rb +0 -587
  181. data/spec/blast_versions/blast_2.9.0/blast_2.9.0_spec.rb +0 -228
  182. data/spec/blast_versions/blast_2.9.0/import_spec_capybara_local_2.9.0.rb +0 -585
  183. data/spec/blast_versions/diamond_0.9.24/diamond_0.9.24_spec.rb +0 -176
  184. data/spec/blast_versions/diamond_0.9.24/import_spec_capybara_local_0.9.24.rb +0 -237
  185. data/spec/capybara_spec.rb +0 -345
  186. data/spec/config_spec.rb +0 -87
  187. data/spec/database/funky_ids/funky_ids.fa +0 -16
  188. data/spec/database/funky_ids/v4/funky_ids.fa.nhd +0 -8
  189. data/spec/database/funky_ids/v4/funky_ids.fa.nhi +0 -0
  190. data/spec/database/funky_ids/v4/funky_ids.fa.nhr +0 -0
  191. data/spec/database/funky_ids/v4/funky_ids.fa.nin +0 -0
  192. data/spec/database/funky_ids/v4/funky_ids.fa.nog +0 -0
  193. data/spec/database/funky_ids/v4/funky_ids.fa.nsd +0 -15
  194. data/spec/database/funky_ids/v4/funky_ids.fa.nsi +0 -0
  195. data/spec/database/funky_ids/v4/funky_ids.fa.nsq +0 -0
  196. data/spec/database/funky_ids/v5/funky_ids.fa.ndb +0 -0
  197. data/spec/database/funky_ids/v5/funky_ids.fa.nhd +0 -8
  198. data/spec/database/funky_ids/v5/funky_ids.fa.nhi +0 -0
  199. data/spec/database/funky_ids/v5/funky_ids.fa.nhr +0 -0
  200. data/spec/database/funky_ids/v5/funky_ids.fa.nin +0 -0
  201. data/spec/database/funky_ids/v5/funky_ids.fa.nog +0 -0
  202. data/spec/database/funky_ids/v5/funky_ids.fa.nos +0 -0
  203. data/spec/database/funky_ids/v5/funky_ids.fa.not +0 -0
  204. data/spec/database/funky_ids/v5/funky_ids.fa.nsq +0 -0
  205. data/spec/database/funky_ids/v5/funky_ids.fa.ntf +0 -0
  206. data/spec/database/funky_ids/v5/funky_ids.fa.nto +0 -0
  207. data/spec/database/funky_sequences/README.md +0 -14
  208. data/spec/database/funky_sequences/funky_aa_sequences.fa +0 -7
  209. data/spec/database/funky_sequences/funky_aa_sequences.fa.phd +0 -3
  210. data/spec/database/funky_sequences/funky_aa_sequences.fa.phi +0 -0
  211. data/spec/database/funky_sequences/funky_aa_sequences.fa.phr +0 -0
  212. data/spec/database/funky_sequences/funky_aa_sequences.fa.pin +0 -0
  213. data/spec/database/funky_sequences/funky_aa_sequences.fa.pog +0 -0
  214. data/spec/database/funky_sequences/funky_aa_sequences.fa.psd +0 -6
  215. data/spec/database/funky_sequences/funky_aa_sequences.fa.psi +0 -0
  216. data/spec/database/funky_sequences/funky_aa_sequences.fa.psq +0 -0
  217. data/spec/database/funky_sequences/funky_na_sequences.fa +0 -2
  218. data/spec/database/funky_sequences/funky_na_sequences.fa.nhr +0 -0
  219. data/spec/database/funky_sequences/funky_na_sequences.fa.nin +0 -0
  220. data/spec/database/funky_sequences/funky_na_sequences.fa.nog +0 -0
  221. data/spec/database/funky_sequences/funky_na_sequences.fa.nsd +0 -2
  222. data/spec/database/funky_sequences/funky_na_sequences.fa.nsi +0 -0
  223. data/spec/database/funky_sequences/funky_na_sequences.fa.nsq +0 -0
  224. data/spec/database/ox_parse_error/query.fa +0 -1
  225. data/spec/database/ox_parse_error/rand1.fa +0 -2
  226. data/spec/database/ox_parse_error/rand1.fa.nhd +0 -1
  227. data/spec/database/ox_parse_error/rand1.fa.nhi +0 -0
  228. data/spec/database/ox_parse_error/rand1.fa.nhr +0 -0
  229. data/spec/database/ox_parse_error/rand1.fa.nin +0 -0
  230. data/spec/database/ox_parse_error/rand1.fa.nog +0 -0
  231. data/spec/database/ox_parse_error/rand1.fa.nsd +0 -2
  232. data/spec/database/ox_parse_error/rand1.fa.nsi +0 -0
  233. data/spec/database/ox_parse_error/rand1.fa.nsq +0 -0
  234. data/spec/database/ox_parse_error/rand2.fa +0 -2
  235. data/spec/database/ox_parse_error/rand2.fa.nhd +0 -1
  236. data/spec/database/ox_parse_error/rand2.fa.nhi +0 -0
  237. data/spec/database/ox_parse_error/rand2.fa.nhr +0 -0
  238. data/spec/database/ox_parse_error/rand2.fa.nin +0 -0
  239. data/spec/database/ox_parse_error/rand2.fa.nog +0 -0
  240. data/spec/database/ox_parse_error/rand2.fa.nsd +0 -2
  241. data/spec/database/ox_parse_error/rand2.fa.nsi +0 -0
  242. data/spec/database/ox_parse_error/rand2.fa.nsq +0 -0
  243. data/spec/database/ox_parse_error_unique_ids/query.fa +0 -1
  244. data/spec/database/ox_parse_error_unique_ids/rand1.fa +0 -2
  245. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nhd +0 -1
  246. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nhi +0 -0
  247. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nhr +0 -0
  248. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nin +0 -0
  249. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nog +0 -0
  250. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nsd +0 -2
  251. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nsi +0 -0
  252. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nsq +0 -0
  253. data/spec/database/ox_parse_error_unique_ids/rand2.fa +0 -2
  254. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nhd +0 -1
  255. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nhi +0 -0
  256. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nhr +0 -0
  257. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nin +0 -0
  258. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nog +0 -0
  259. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nsd +0 -2
  260. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nsi +0 -0
  261. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nsq +0 -0
  262. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa +0 -6
  263. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhd +0 -1
  264. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhi +0 -0
  265. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhr +0 -0
  266. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nin +0 -0
  267. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nog +0 -0
  268. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsd +0 -2
  269. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsi +0 -0
  270. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsq +0 -0
  271. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.ndb +0 -0
  272. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhd +0 -8
  273. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhi +0 -0
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  481. data/spec/dotdir/diamond_0.9.24/blastx/job.yaml +0 -8
  482. data/spec/dotdir/diamond_0.9.24/blastx_nohits/DIAMOND_BLASTX_NOHITS_0.9.24.xml +0 -41
  483. data/spec/dotdir/diamond_0.9.24/blastx_nohits/job.yaml +0 -8
  484. data/spec/download_helper.rb +0 -35
  485. data/spec/empty_config.yml +0 -0
  486. data/spec/makeblastdb_spec.rb +0 -121
  487. data/spec/routes_spec.rb +0 -93
  488. data/spec/sample.conf +0 -2
  489. data/spec/sequence_spec.rb +0 -99
  490. data/spec/sequences/MH011443_1_gi_1486783306_gb_MH011443_1.txt +0 -6
  491. data/spec/sequences/MH011443_1_gi_1486783307_gb_AYF55702_1.txt +0 -6
  492. data/spec/sequences/MH011443_1_gi_1528997474_gb_MH447967_1.txt +0 -30
  493. data/spec/sequences/MH011443_1_sp_P04637_P53_HUMAN.txt +0 -6
  494. data/spec/sequences/Nucleotide_TP53_COX41.fasta +0 -15
  495. data/spec/sequences/Protein_TP53_COX41.fasta +0 -12
  496. data/spec/sequences/Query_1_SI2_2_0_06267.txt +0 -6
  497. data/spec/sequences/alignment-2_hits.txt +0 -12
  498. data/spec/sequences/alignment-35_hits_diamond_blastp.txt +0 -210
  499. data/spec/sequences/alignment-35_hits_diamond_blastx.txt +0 -210
  500. data/spec/sequences/alignment-3_hits.txt +0 -18
  501. data/spec/sequences/alignment-40_hits_blastn.txt +0 -246
  502. data/spec/sequences/alignment-40_hits_blastp.txt +0 -240
  503. data/spec/sequences/alignment-40_hits_blastp_2.2.30.txt +0 -240
  504. data/spec/sequences/alignment-40_hits_blastx.txt +0 -240
  505. data/spec/sequences/alignment-40_hits_tblastn.txt +0 -240
  506. data/spec/sequences/alignment-40_hits_tblastn_2.2.30.txt +0 -240
  507. data/spec/sequences/alignment-40_hits_tblastx.txt +0 -2664
  508. data/spec/sequences/alignment-4_hits.txt +0 -24
  509. data/spec/sequences/alignment-4_hits_blastn.txt +0 -24
  510. data/spec/sequences/alignment-4_hits_blastp.txt +0 -24
  511. data/spec/sequences/alignment-4_hits_blastp_2.2.30.txt +0 -24
  512. data/spec/sequences/alignment-4_hits_blastx.txt +0 -24
  513. data/spec/sequences/alignment-4_hits_diamond_blastp.txt +0 -24
  514. data/spec/sequences/alignment-4_hits_diamond_blastx.txt +0 -24
  515. data/spec/sequences/alignment-4_hits_tblastn.txt +0 -24
  516. data/spec/sequences/alignment-4_hits_tblastn_2.2.30.txt +0 -24
  517. data/spec/sequences/alignment-4_hits_tblastx.txt +0 -318
  518. data/spec/sequences/nucleotide_query.fa +0 -21
  519. data/spec/sequences/problematic_query.fa +0 -5
  520. data/spec/sequences/protein_query.fa +0 -9
  521. data/spec/sequences/sample_query_fire_ant_obps.fa +0 -44
  522. data/spec/sequences/sequenceserver-2_hits.fa +0 -10
  523. data/spec/sequences/sequenceserver-SI2.2.0_06267.fa +0 -5
  524. data/spec/sequences/sp_P04637_P53_HUMAN_gi_1099170394_ref_XP_018868681_1.txt +0 -6
  525. data/spec/sequences/sp_P04637_P53_HUMAN_gi_120407068_ref_NP_000537_3.txt +0 -6
  526. data/spec/sequences/sp_P04637_P53_HUMAN_gi_1484127324_gb_MG595988_1.txt +0 -6
  527. data/spec/sequences/sp_P04637_P53_HUMAN_gi_395440626_gb_JQ694049_1.txt +0 -6
  528. data/spec/sequences/sp_P04637_P53_HUMAN_sp_P04637_P53_HUMAN.txt +0 -6
  529. data/spec/sequenceserver_spec.rb +0 -90
  530. data/spec/spec_helper.rb +0 -63
data/spec/sequences/alignment-4_hits.txt DELETED
@@ -1,24 +0,0 @@
1
- >MH011443.1:1-123
2
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
3
- >MH011443.1:1-123_alignment_gi|1486783306|gb|MH011443.1|:1-123
4
- |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5
- >gi|1486783306|gb|MH011443.1|:1-123
6
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
7
- >MH011443.1:1-123
8
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
9
- >MH011443.1:1-123_alignment_gi|1484127332|gb|MG595992.1|:436-558
10
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11
- >gi|1484127332|gb|MG595992.1|:436-558
12
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
13
- >MH011443.1:1-123
14
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
15
- >MH011443.1:1-123_alignment_gi|1484127322|gb|MG595987.1|:436-558
16
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17
- >gi|1484127322|gb|MG595987.1|:436-558
18
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
19
- >NM_001861.5:1-698
20
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC
21
- >NM_001861.5:1-698_alignment_gi|974005291|ref|NM_001861.4|:129-826
22
- ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
23
- >gi|974005291|ref|NM_001861.4|:129-826
24
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC
data/spec/sequences/alignment-4_hits_blastn.txt DELETED
@@ -1,24 +0,0 @@
1
- >MH011443.1:1-123
2
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
3
- >MH011443.1:1-123_alignment_gi|1484127332|gb|MG595992.1|:436-558
4
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5
- >gi|1484127332|gb|MG595992.1|:436-558
6
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
7
- >MH011443.1:1-123
8
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
9
- >MH011443.1:1-123_alignment_gi|1484127330|gb|MG595991.1|:436-558
10
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11
- >gi|1484127330|gb|MG595991.1|:436-558
12
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
13
- >NM_001861.5:1-692
14
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACC
15
- >NM_001861.5:1-692_alignment_gi|38382822|gb|BC062437.1|:8-699
16
- ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17
- >gi|38382822|gb|BC062437.1|:8-699
18
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGACTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACC
19
- >NM_001861.5:4-698
20
- TTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC
21
- >NM_001861.5:4-698_alignment_gi|974005313|ref|NM_001318797.1|:1-691
22
- |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
23
- >gi|974005313|ref|NM_001318797.1|:1-691
24
- TTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCAT----GTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC
data/spec/sequences/alignment-4_hits_blastp.txt DELETED
@@ -1,24 +0,0 @@
1
- >sp|P04637|P53_HUMAN:1-393
2
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
3
- >sp|P04637|P53_HUMAN:1-393_alignment_gi|1099170394|ref|XP_018868681.1|:16-408
4
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
5
- >gi|1099170394|ref|XP_018868681.1|:16-408
6
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPTLNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
7
- >sp|P04637|P53_HUMAN:1-393
8
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
9
- >sp|P04637|P53_HUMAN:1-393_alignment_gi|1099170400|ref|XP_018868682.1|:13-405
10
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
11
- >gi|1099170400|ref|XP_018868682.1|:13-405
12
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPTLNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
13
- >sp|P13073|COX41_HUMAN:1-169
14
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
15
- >sp|P13073|COX41_HUMAN:1-169_alignment_gi|397500384|ref|XP_003820896.1|:7-175
16
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
17
- >gi|397500384|ref|XP_003820896.1|:7-175
18
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
19
- >sp|P13073|COX41_HUMAN:1-169
20
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
21
- >sp|P13073|COX41_HUMAN:1-169_alignment_gi|4502981|ref|NP_001852.1|:1-169
22
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
23
- >gi|4502981|ref|NP_001852.1|:1-169
24
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
data/spec/sequences/alignment-4_hits_blastp_2.2.30.txt DELETED
@@ -1,24 +0,0 @@
1
- >sp|P04637|P53_HUMAN:1-393
2
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
3
- >sp|P04637|P53_HUMAN:1-393_alignment_gi|120407068|ref|NP_000537.3|:1-393
4
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
5
- >gi|120407068|ref|NP_000537.3|:1-393
6
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
7
- >sp|P04637|P53_HUMAN:1-393
8
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
9
- >sp|P04637|P53_HUMAN:1-393_alignment_gi|1099170394|ref|XP_018868681.1|:16-408
10
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
11
- >gi|1099170394|ref|XP_018868681.1|:16-408
12
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPTLNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
13
- >sp|P13073|COX41_HUMAN:1-169
14
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
15
- >sp|P13073|COX41_HUMAN:1-169_alignment_gi|397500384|ref|XP_003820896.1|:7-175
16
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
17
- >gi|397500384|ref|XP_003820896.1|:7-175
18
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
19
- >sp|P13073|COX41_HUMAN:1-169
20
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
21
- >sp|P13073|COX41_HUMAN:1-169_alignment_gi|4502981|ref|NP_001852.1|:1-169
22
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
23
- >gi|4502981|ref|NP_001852.1|:1-169
24
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
data/spec/sequences/alignment-4_hits_blastx.txt DELETED
@@ -1,24 +0,0 @@
1
- >MH011443.1:1-123
2
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
3
- >MH011443.1:1-123_alignment_gi|42821410|dbj|BAD11806.1|:21-61
4
- WVDSTPPPGTRVRA+AIYKQSQHMTEVVRRCPHHERCSDSD
5
- >gi|42821410|dbj|BAD11806.1|:21-61
6
- WVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSD
7
- >MH011443.1:1-123
8
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
9
- >MH011443.1:1-123_alignment_gi|157086935|gb|ABV21350.1|:21-61
10
- WVDSTPPPGTRVRA+AIYKQSQHMTEVVRRCPHHERCSDSD
11
- >gi|157086935|gb|ABV21350.1|:21-61
12
- WVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSD
13
- >NM_001861.5:60-566
14
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
15
- >NM_001861.5:60-566_alignment_gi|38382823|gb|AAH62437.1|:1-169
16
- ML TRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
17
- >gi|38382823|gb|AAH62437.1|:1-169
18
- MLTTRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
19
- >NM_001861.5:60-566
20
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
21
- >NM_001861.5:60-566_alignment_gi|426383129|ref|XP_004058144.1|:1-169
22
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRD+PLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
23
- >gi|426383129|ref|XP_004058144.1|:1-169
24
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDYPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
data/spec/sequences/alignment-4_hits_diamond_blastp.txt DELETED
@@ -1,24 +0,0 @@
1
- >sp|P04637|P53_HUMAN:1-394
2
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
3
- >sp|P04637|P53_HUMAN:1-394_alignment_sp|P04637|P53_HUMAN:1-393
4
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
5
- >sp|P04637|P53_HUMAN:1-393
6
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
7
- >sp|P04637|P53_HUMAN:1-394
8
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
9
- >sp|P04637|P53_HUMAN:1-394_alignment_sp|P56424|P53_MACMU:1-393
10
- MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDEAPRM EAAP XXXXXXXXXXXXXXXXXXXXXXSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP H+LPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD
11
- >sp|P56424|P53_MACMU:1-393
12
- MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPPMXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHQLPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD
13
- >sp|P13073|COX41_HUMAN:1-170
14
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
15
- >sp|P13073|COX41_HUMAN:1-170_alignment_sp|P13073|COX41_HUMAN:1-169
16
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
17
- >sp|P13073|COX41_HUMAN:1-169
18
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
19
- >sp|P13073|COX41_HUMAN:1-170
20
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
21
- >sp|P13073|COX41_HUMAN:1-170_alignment_sp|P00423|COX41_BOVIN:1-169
22
- MLATRVFSL+G+RAISTSVCVRAH SVVKSED++LP+Y+DRRD+PLP+VAHVK+LSASQKALKEKEKASWSSLS+DEKVELYR+KFKESFAEMNR +NEWKTVVG AMFFIGFTAL+++W+KHYVYGP+P +F++EWVAKQTKRMLDMKV PIQG ++KWDY+KNEWKK
23
- >sp|P00423|COX41_BOVIN:1-169
24
- MLATRVFSLIGRRAISTSVCVRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK
data/spec/sequences/alignment-4_hits_diamond_blastx.txt DELETED
@@ -1,24 +0,0 @@
1
- >MH011443.1:1-124
2
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
3
- >MH011443.1:1-124_alignment_sp|Q95330|P53_RABIT:143-183
4
- WVDSTPPPGTRVRA+AIYK+SQHMTEVVRRCPHHERCSDSD
5
- >sp|Q95330|P53_RABIT:143-183
6
- WVDSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDSD
7
- >MH011443.1:1-124
8
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
9
- >MH011443.1:1-124_alignment_sp|Q9WUR6|P53_CAVPO:144-184
10
- WV+S PPPGTRVRA+AIYK+SQHMTEVVRRCPHHERCSDSD
11
- >sp|Q9WUR6|P53_CAVPO:144-184
12
- WVESPPPPGTRVRALAIYKKSQHMTEVVRRCPHHERCSDSD
13
- >NM_001861.5:135-567
14
- SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
15
- >NM_001861.5:135-567_alignment_sp|O46577|COX41_PANTR:1-144
16
- SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
17
- >sp|O46577|COX41_PANTR:1-144
18
- SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
19
- >NM_001861.5:135-567
20
- SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
21
- >NM_001861.5:135-567_alignment_sp|O46578|COX41_GORGO:1-144
22
- SVVKSEDFSLPAYMDRRD+PLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
23
- >sp|O46578|COX41_GORGO:1-144
24
- SVVKSEDFSLPAYMDRRDYPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
data/spec/sequences/alignment-4_hits_tblastn.txt DELETED
@@ -1,24 +0,0 @@
1
- >sp|P04637|P53_HUMAN:1-393
2
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
3
- >sp|P04637|P53_HUMAN:1-393_alignment_gi|339813|gb|M14694.1|HUMTP53A:126-1304
4
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAP VAPAPA PTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
5
- >gi|339813|gb|M14694.1|HUMTP53A:126-1304
6
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPRVAPAPATPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
7
- >sp|P04637|P53_HUMAN:1-393
8
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
9
- >sp|P04637|P53_HUMAN:1-393_alignment_gi|35209|emb|X02469.1|:136-1314
10
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
11
- >gi|35209|emb|X02469.1|:136-1314
12
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
13
- >sp|P13073|COX41_HUMAN:1-169
14
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
15
- >sp|P13073|COX41_HUMAN:1-169_alignment_gi|1311702|gb|M21575.1|HUMCOX4A:35-541
16
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
17
- >gi|1311702|gb|M21575.1|HUMCOX4A:35-541
18
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
19
- >sp|P13073|COX41_HUMAN:1-169
20
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
21
- >sp|P13073|COX41_HUMAN:1-169_alignment_gi|353681772|ref|NM_001251915.1|:64-570
22
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
23
- >gi|353681772|ref|NM_001251915.1|:64-570
24
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
data/spec/sequences/alignment-4_hits_tblastn_2.2.30.txt DELETED
@@ -1,24 +0,0 @@
1
- >sp|P04637|P53_HUMAN:1-393
2
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
3
- >sp|P04637|P53_HUMAN:1-393_alignment_gi|35209|emb|X02469.1|:136-1314
4
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
5
- >gi|35209|emb|X02469.1|:136-1314
6
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
7
- >sp|P04637|P53_HUMAN:1-393
8
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
9
- >sp|P04637|P53_HUMAN:1-393_alignment_gi|339815|gb|M14695.1|HUMTP53B:122-1300
10
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPA PTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
11
- >gi|339815|gb|M14695.1|HUMTP53B:122-1300
12
- MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPATPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
13
- >sp|P13073|COX41_HUMAN:1-169
14
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
15
- >sp|P13073|COX41_HUMAN:1-169_alignment_gi|1311702|gb|M21575.1|HUMCOX4A:35-541
16
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
17
- >gi|1311702|gb|M21575.1|HUMCOX4A:35-541
18
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
19
- >sp|P13073|COX41_HUMAN:1-169
20
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
21
- >sp|P13073|COX41_HUMAN:1-169_alignment_gi|353681772|ref|NM_001251915.1|:64-570
22
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
23
- >gi|353681772|ref|NM_001251915.1|:64-570
24
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
data/spec/sequences/alignment-4_hits_tblastx.txt DELETED
@@ -1,318 +0,0 @@
1
- >MH011443.1:1-123
2
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
3
- >MH011443.1:1-123_alignment_gi|1484127324|gb|MG595988.1|:436-558
4
- WVDSTPPPGTRVRA+AIYKQSQHMTEVVRRCPHHERCSDSD
5
- >gi|1484127324|gb|MG595988.1|:436-558
6
- WVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSD
7
- >MH011443.1:2-121
8
- RYLSSAHGGGSASQPPSCAVTACRWPRRGRGCRAGVWNQP
9
- >MH011443.1:2-121_alignment_gi|1484127324|gb|MG595988.1|:437-556
10
- RYLSSAHGGGSASQPPSCAVTACRWP RGRGCRAGVWNQP
11
- >gi|1484127324|gb|MG595988.1|:437-556
12
- RYLSSAHGGGSASQPPSCAVTACRWPWRGRGCRAGVWNQP
13
- >MH011443.1:3-122
14
- SLSEQRSWWGQRLTTSVMCCDCL*MATARTRVPGGGVEST
15
- >MH011443.1:3-122_alignment_gi|1484127324|gb|MG595988.1|:438-557
16
- SLSEQRSWWGQRLTTSVMCCDCL*MA ARTRVPGGGVEST
17
- >gi|1484127324|gb|MG595988.1|:438-557
18
- SLSEQRSWWGQRLTTSVMCCDCL*MAMARTRVPGGGVEST
19
- >MH011443.1:3-86
20
- G*FHTPARHPRPRRGHLQAVTAHDGGCE
21
- >MH011443.1:3-86_alignment_gi|1484127324|gb|MG595988.1|:438-521
22
- G*FHTPARHPRPR GHLQAVTAHDGGCE
23
- >gi|1484127324|gb|MG595988.1|:438-521
24
- G*FHTPARHPRPRHGHLQAVTAHDGGCE
25
- >MH011443.1:80-121
26
- L*GAAPTMSAAQIA
27
- >MH011443.1:80-121_alignment_gi|1484127324|gb|MG595988.1|:515-556
28
- L*GAAPTMSAAQIA
29
- >gi|1484127324|gb|MG595988.1|:515-556
30
- L*GAAPTMSAAQIA
31
- >MH011443.1:1-123
32
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
33
- >MH011443.1:1-123_alignment_gi|1484127322|gb|MG595987.1|:436-558
34
- WVDSTPPPGTRVRA+AIYKQSQHMTEVVRRCPHHERCSDSD
35
- >gi|1484127322|gb|MG595987.1|:436-558
36
- WVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSD
37
- >MH011443.1:2-121
38
- RYLSSAHGGGSASQPPSCAVTACRWPRRGRGCRAGVWNQP
39
- >MH011443.1:2-121_alignment_gi|1484127322|gb|MG595987.1|:437-556
40
- RYLSSAHGGGSASQPPSCAVTACRWP RGRGCRAGVWNQP
41
- >gi|1484127322|gb|MG595987.1|:437-556
42
- RYLSSAHGGGSASQPPSCAVTACRWPWRGRGCRAGVWNQP
43
- >MH011443.1:3-122
44
- SLSEQRSWWGQRLTTSVMCCDCL*MATARTRVPGGGVEST
45
- >MH011443.1:3-122_alignment_gi|1484127322|gb|MG595987.1|:438-557
46
- SLSEQRSWWGQRLTTSVMCCDCL*MA ARTRVPGGGVEST
47
- >gi|1484127322|gb|MG595987.1|:438-557
48
- SLSEQRSWWGQRLTTSVMCCDCL*MAMARTRVPGGGVEST
49
- >MH011443.1:3-86
50
- G*FHTPARHPRPRRGHLQAVTAHDGGCE
51
- >MH011443.1:3-86_alignment_gi|1484127322|gb|MG595987.1|:438-521
52
- G*FHTPARHPRPR GHLQAVTAHDGGCE
53
- >gi|1484127322|gb|MG595987.1|:438-521
54
- G*FHTPARHPRPRHGHLQAVTAHDGGCE
55
- >MH011443.1:80-121
56
- L*GAAPTMSAAQIA
57
- >MH011443.1:80-121_alignment_gi|1484127322|gb|MG595987.1|:515-556
58
- L*GAAPTMSAAQIA
59
- >gi|1484127322|gb|MG595987.1|:515-556
60
- L*GAAPTMSAAQIA
61
- >NM_001861.5:293-697
62
- SRVVSH*VQGELC*DEQGLERVEDGCGRCHVLHRFHRARYHVAEALCVRPPPAKL*QRVGGQADQEDAGHEGEPHPGLSLQVGLRKERVEEVRDAGLRLHLRLALSPPCNSMPIYWKPVMPNSCTTANK*PVYLK
63
- >NM_001861.5:293-697_alignment_gi|39645193|gb|BC021236.2|:272-676
64
- SRVVSH*VQGELC*DEQGLERVEDGCGRCHVLHRFHRARYHVAEALCVRPPPAKL*QRVGGQADQEDAGHEGEPHPGLSLQVGLRKERVEEVRDAGLRLHLRLALSPPCNSMPIYWKPVMPNSCTTANK*PVYLK
65
- >gi|39645193|gb|BC021236.2|:272-676
66
- SRVVSH*VQGELC*DEQGLERVEDGCGRCHVLHRFHRARYHVAEALCVRPPPAKL*QRVGGQADQEDAGHEGEPHPGLSLQVGLRKERVEEVRDAGLRLHLRLALSPPCNSMPIYWKPVMPNSCTTANK*PVYLK
67
- >NM_001861.5:22-306
68
- GCRGRSRRAVAAECWLPGYLA*LASEQFPPLCVYELMKVL*RAKTFRSQLIWIGVTTPCRRWPMSSTCLPAXXXXXXXXXPPGAASPWMRKSSCI
69
- >NM_001861.5:22-306_alignment_gi|39645193|gb|BC021236.2|:1-285
70
- GCRGRSRRAVAAECWLPGYLA*LASEQFPPLCVYELMKVL*RAKTFRSQLIWIGVTTPCRRWPMSSTCLPARRH*RRRRRPPGAASPWMRKSSCI
71
- >gi|39645193|gb|BC021236.2|:1-285
72
- GCRGRSRRAVAAECWLPGYLA*LASEQFPPLCVYELMKVL*RAKTFRSQLIWIGVTTPCRRWPMSSTCLPARRH*RRRRRPPGAASPWMRKSSCI
73
- >NM_001861.5:60-695
74
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK*EMLACACTCAWLCHRHATPCLFTGNLLCQTVVPLLINDQFT*
75
- >NM_001861.5:60-695_alignment_gi|39645193|gb|BC021236.2|:39-674
76
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK*EMLACACTCAWLCHRHATPCLFTGNLLCQTVVPLLINDQFT*
77
- >gi|39645193|gb|BC021236.2|:39-674
78
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK*EMLACACTCAWLCHRHATPCLFTGNLLCQTVVPLLINDQFT*
79
- >NM_001861.5:23-535
80
- LEAKPWMGFTFMSSILLVCLATHSLSKLCGRGPYT*CFCHMITSAVKPMKNMAPPTTVFHSFEPLFISAKLSLNLMRYNSTFSSMERLLQEAFSFSFNAFWLADRCLTWATSGKGWSRRSI*AGSEKSSLFTTLS*ARTHTEVEIARLPTRLNTLVANILPPLPAATALYT
81
- >NM_001861.5:23-535_alignment_gi|39645193|gb|BC021236.2|:2-514
82
- LEAKPWMGFTFMSSILLVCLATHSLSKLCGRGPYT*CFCHMITSAVKPMKNMAPPTTVFHSFEPLFISAKLSLNLMRYNSTFSSMERLLQEAFSFSF+AFWLADRCLTWATSGKGWSRRSI*AGSEKSSLFTTLS*ARTHTEVEIARLPTRLNTLVANILPPLPAATALYT
83
- >gi|39645193|gb|BC021236.2|:2-514
84
- LEAKPWMGFTFMSSILLVCLATHSLSKLCGRGPYT*CFCHMITSAVKPMKNMAPPTTVFHSFEPLFISAKLSLNLMRYNSTFSSMERLLQEAFSFSFSAFWLADRCLTWATSGKGWSRRSI*AGSEKSSLFTTLS*ARTHTEVEIARLPTRLNTLVANILPPLPAATALYT
85
- >NM_001861.5:526-696
86
- FR*TGHLLAVVQLFGITGFQ*IGMELHGGDXXXXXXXXRPASLTSSTRSFRSPTWRL
87
- >NM_001861.5:526-696_alignment_gi|39645193|gb|BC021236.2|:505-675
88
- FR*TGHLLAVVQLFGITGFQ*IGMELHGGDRARRRCRRRPASLTSSTRSFRSPTWRL
89
- >gi|39645193|gb|BC021236.2|:505-675
90
- FR*TGHLLAVVQLFGITGFQ*IGMELHGGDRARRRCRRRPASLTSSTRSFRSPTWRL
91
- >NM_001861.5:276-518
92
- DGVHLHVQHPLGLLGHPLFVKALREGAVHIVLLPHDNERGETDEEHGTAHNRLPLVRAPVHLSKALLELNAIQLDFLIHGE
93
- >NM_001861.5:276-518_alignment_gi|39645193|gb|BC021236.2|:255-497
94
- DGVHLHVQHPLGLLGHPLFVKALREGAVHIVLLPHDNERGETDEEHGTAHNRLPLVRAPVHLSKALLELNAIQLDFLIHGE
95
- >gi|39645193|gb|BC021236.2|:255-497
96
- DGVHLHVQHPLGLLGHPLFVKALREGAVHIVLLPHDNERGETDEEHGTAHNRLPLVRAPVHLSKALLELNAIQLDFLIHGE
97
- >NM_001861.5:24-227
98
- RQVLDMGHLRQGVVTPIHISWERKVFALHNTFMSSYTHRGGNCSLAN*AKYPGSQHSAATARRDRPLH
99
- >NM_001861.5:24-227_alignment_gi|39645193|gb|BC021236.2|:3-206
100
- RQVLDMGHLRQGVVTPIHISWERKVFALHNTFMSSYTHRGGNCSLAN*AKYPGSQHSAATARRDRPLH
101
- >gi|39645193|gb|BC021236.2|:3-206
102
- RQVLDMGHLRQGVVTPIHISWERKVFALHNTFMSSYTHRGGNCSLAN*AKYPGSQHSAATARRDRPLH
103
- >NM_001861.5:573-695
104
- SGKLVIY*QWYNCLA*QVSSK*AWSCMAVTEPGAGAGAGQH
105
- >NM_001861.5:573-695_alignment_gi|39645193|gb|BC021236.2|:552-674
106
- SGKLVIY*QWYNCLA*QVSSK*AWSCMAVTEPGAGAGAGQH
107
- >gi|39645193|gb|BC021236.2|:552-674
108
- SGKLVIY*QWYNCLA*QVSSK*AWSCMAVTEPGAGAGAGQH
109
- >NM_001861.5:427-696
110
- TMCTAPSRKALTKSGWPSRPRGCWT*R*TPSRA*PPSGTTKRTSGRSERCWPAPAPAPGSVTAMQLHAYLLETCYAKQLYHC**MTSLPE
111
- >NM_001861.5:427-696_alignment_gi|39645193|gb|BC021236.2|:406-675
112
- TMCTAPSRKALTKSGWPSRPRGCWT*R*TPSRA*PPSGTTKRTSGRSERCWPAPAPAPGSVTAMQLHAYLLETCYAKQLYHC**MTSLPE
113
- >gi|39645193|gb|BC021236.2|:406-675
114
- TMCTAPSRKALTKSGWPSRPRGCWT*R*TPSRA*PPSGTTKRTSGRSERCWPAPAPAPGSVTAMQLHAYLLETCYAKQLYHC**MTSLPE
115
- >NM_001861.5:47-175
116
- QWRQNVGYQGI*PSWQASNFHLCVCTSS*KCCEERRLFAPSLY
117
- >NM_001861.5:47-175_alignment_gi|39645193|gb|BC021236.2|:26-154
118
- QWRQNVGYQGI*PSWQASNFHLCVCTSS*KCCEERRLFAPSLY
119
- >gi|39645193|gb|BC021236.2|:26-154
120
- QWRQNVGYQGI*PSWQASNFHLCVCTSS*KCCEERRLFAPSLY
121
- >NM_001861.5:46-180
122
- DPYKLGAKSLRSSQHFHELVHTQRWKLLACQLG*IPW*PTFCRHC
123
- >NM_001861.5:46-180_alignment_gi|39645193|gb|BC021236.2|:25-159
124
- DPYKLGAKSLRSSQHFHELVHTQRWKLLACQLG*IPW*PTFCRHC
125
- >gi|39645193|gb|BC021236.2|:25-159
126
- DPYKLGAKSLRSSQHFHELVHTQRWKLLACQLG*IPW*PTFCRHC
127
- >NM_001861.5:611-697
128
- FQVNWSFISSGTTVWHNRFPVNRHGVAWR
129
- >NM_001861.5:611-697_alignment_gi|39645193|gb|BC021236.2|:590-676
130
- FQVNWSFISSGTTVWHNRFPVNRHGVAWR
131
- >gi|39645193|gb|BC021236.2|:590-676
132
- FQVNWSFISSGTTVWHNRFPVNRHGVAWR
133
- >NM_001861.5:376-468
134
- TLCQSFAGGGRTHSASAT**XXXXXXXRTWH
135
- >NM_001861.5:376-468_alignment_gi|39645193|gb|BC021236.2|:355-447
136
- TLCQSFAGGGRTHSASAT**RAR*NR*RTWH
137
- >gi|39645193|gb|BC021236.2|:355-447
138
- TLCQSFAGGGRTHSASAT**RAR*NR*RTWH
139
- >NM_001861.5:223-306
140
- DTTRLSHPWRGCXXXXXXXXXXXSGWQT
141
- >NM_001861.5:223-306_alignment_gi|39645193|gb|BC021236.2|:202-285
142
- DTTRLSHPWRGCSRRPSPSPS+PSGWQT
143
- >gi|39645193|gb|BC021236.2|:202-285
144
- DTTRLSHPWRGCSRRPSPSPSVPSGWQT
145
- >NM_001861.5:432-749
146
- VYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK*EMLACACTCAWLCHRHATPCLFTGNLLCQTVVPLLINDQFT*NPL*SVL**YLNES*LKQ
147
- >NM_001861.5:432-749_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8143-8460
148
- VYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK*EMLACACTCAWLCHRHATPCLFTGNLLCQTVVPLLINDQFT*NPL*SVL**YLNES*LKQ
149
- >gi|2738491|gb|AF005889.1|HCOX4GN:8143-8460
150
- VYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK*EMLACACTCAWLCHRHATPCLFTGNLLCQTVVPLLINDQFT*NPL*SVL**YLNES*LKQ
151
- >NM_001861.5:132-299
152
- ESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVE
153
- >NM_001861.5:132-299_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:6342-6509
154
- ESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVE
155
- >gi|2738491|gb|AF005889.1|HCOX4GN:6342-6509
156
- ESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVE
157
- >NM_001861.5:300-431
158
- LYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHY
159
- >NM_001861.5:300-431_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:7139-7270
160
- +YRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHY
161
- >gi|2738491|gb|AF005889.1|HCOX4GN:7139-7270
162
- VYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHY
163
- >NM_001861.5:55-132
164
- AECWLPGYLA*LASEQFPPLCVYELM
165
- >NM_001861.5:55-132_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:2610-2687
166
- +ECWLPGYLA*LASEQFPPLCVYELM
167
- >gi|2738491|gb|AF005889.1|HCOX4GN:2610-2687
168
- SECWLPGYLA*LASEQFPPLCVYELM
169
- >NM_001861.5:1-57
170
- LFRSRDTGCRGRSRRAVAA
171
- >NM_001861.5:1-57_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:1103-1159
172
- LFRSRDTGCRGRSRRAVAA
173
- >gi|2738491|gb|AF005889.1|HCOX4GN:1103-1159
174
- LFRSRDTGCRGRSRRAVAA
175
- >NM_001861.5:526-747
176
- VLISFHLGIIKELITKGFR*TGHLLAVVQLFGITGFQ*IGMELHGGDXXXXXXXXRPASLTSSTRSFRSPTWRL
177
- >NM_001861.5:526-747_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8237-8458
178
- VLISFHLGIIKELITKGFR*TGHLLAVVQLFGITGFQ*IGMELHGGDRARRRCRRRPASLTSSTRSFRSPTWRL
179
- >gi|2738491|gb|AF005889.1|HCOX4GN:8237-8458
180
- VLISFHLGIIKELITKGFR*TGHLLAVVQLFGITGFQ*IGMELHGGDRARRRCRRRPASLTSSTRSFRSPTWRL
181
- >NM_001861.5:131-301
182
- NSTFSSMERLLQEAFSFSFNAFWLADRCLTWATSGKGWSRRSI*AGSEKSSLFTTLS
183
- >NM_001861.5:131-301_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:6341-6511
184
- +STFSSMERLLQEAFSFSF+AFWLADRCLTWATSGKGWSRRSI*AGSEKSSLFTTLS
185
- >gi|2738491|gb|AF005889.1|HCOX4GN:6341-6511
186
- HSTFSSMERLLQEAFSFSFSAFWLADRCLTWATSGKGWSRRSI*AGSEKSSLFTTLS
187
- >NM_001861.5:302-430
188
- *CFCHMITSAVKPMKNMAPPTTVFHSFEPLFISAKLSLNLMRY
189
- >NM_001861.5:302-430_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:7141-7269
190
- *CFCHMITSAVKPMKNMAPPTTVFHSFEPLFISAKLSLNLMRY
191
- >gi|2738491|gb|AF005889.1|HCOX4GN:7141-7269
192
- *CFCHMITSAVKPMKNMAPPTTVFHSFEPLFISAKLSLNLMRY
193
- >NM_001861.5:431-535
194
- LEAKPWMGFTFMSSILLVCLATHSLSKLCGRGPYT
195
- >NM_001861.5:431-535_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8142-8246
196
- LEAKPWMGFTFMSSILLVCLATHSLSKLCGRGPYT
197
- >gi|2738491|gb|AF005889.1|HCOX4GN:8142-8246
198
- LEAKPWMGFTFMSSILLVCLATHSLSKLCGRGPYT
199
- >NM_001861.5:58-150
200
- RSSQHFHELVHTQRWKLLACQLG*IPW*PTF
201
- >NM_001861.5:58-150_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:2613-2705
202
- + S +HELVHTQRWKLLACQLG*IPW*PTF
203
- >gi|2738491|gb|AF005889.1|HCOX4GN:2613-2705
204
- KKSHTYHELVHTQRWKLLACQLG*IPW*PTF
205
- >NM_001861.5:2-58
206
- LPPLPAATALYTRCPATGR
207
- >NM_001861.5:2-58_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:1104-1160
208
- LPPLPAATALYTRCPATGR
209
- >gi|2738491|gb|AF005889.1|HCOX4GN:1104-1160
210
- LPPLPAATALYTRCPATGR
211
- >NM_001861.5:433-747
212
- CTAPSRKALTKSGWPSRPRGCWT*R*TPSRA*PPSGTTKRTSGRSERCWPAPAPAPGSVTAMQLHAYLLETCYAKQLYHC**MTSLPETLCDQFFNDT*MKAN*N
213
- >NM_001861.5:433-747_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8144-8458
214
- CTAPSRKALTKSGWPSRPRGCWT*R*TPSRA*PPSGTTKRTSGRSERCWPAPAPAPGSVTAMQLHAYLLETCYAKQLYHC**MTSLPETLCDQFFNDT*MKAN*N
215
- >gi|2738491|gb|AF005889.1|HCOX4GN:8144-8458
216
- CTAPSRKALTKSGWPSRPRGCWT*R*TPSRA*PPSGTTKRTSGRSERCWPAPAPAPGSVTAMQLHAYLLETCYAKQLYHC**MTSLPETLCDQFFNDT*MKAN*N
217
- >NM_001861.5:133-300
218
- KVL*RAKTFRSQLIWIGVTTPCRRWPMSSTCLPAXXXXXXXXXPPGAASPWMRKSS
219
- >NM_001861.5:133-300_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:6343-6510
220
- KVL*RAKTFRSQLIWIGVTTPCRRWPMSSTCLPARRH*RRRRRPPGAASPWMRKSS
221
- >gi|2738491|gb|AF005889.1|HCOX4GN:6343-6510
222
- KVL*RAKTFRSQLIWIGVTTPCRRWPMSSTCLPARRH*RRRRRPPGAASPWMRKSS
223
- >NM_001861.5:302-430
224
- VSH*VQGELC*DEQGLERVEDGCGRCHVLHRFHRARYHVAEAL
225
- >NM_001861.5:302-430_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:7141-7269
226
- VSH*VQGELC*DEQGLERVEDGCGRCHVLHRFHRARYHVAEAL
227
- >gi|2738491|gb|AF005889.1|HCOX4GN:7141-7269
228
- VSH*VQGELC*DEQGLERVEDGCGRCHVLHRFHRARYHVAEAL
229
- >NM_001861.5:56-130
230
- QNVGYQGI*PSWQASNFHLCVCTSS
231
- >NM_001861.5:56-130_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:2611-2685
232
- QNVGYQGI*PSWQASNFHLCVCTSS
233
- >gi|2738491|gb|AF005889.1|HCOX4GN:2611-2685
234
- QNVGYQGI*PSWQASNFHLCVCTSS
235
- >NM_001861.5:573-749
236
- LF*LAFI*VSLKN*SQRVSGKLVIY*QWYNCLA*QVSSK*AWSCMAVTEPGAGAGAGQH
237
- >NM_001861.5:573-749_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8284-8460
238
- LF*LAFI*VSLKN*SQRVSGKLVIY*QWYNCLA*QVSSK*AWSCMAVTEPGAGAGAGQH
239
- >gi|2738491|gb|AF005889.1|HCOX4GN:8284-8460
240
- LF*LAFI*VSLKN*SQRVSGKLVIY*QWYNCLA*QVSSK*AWSCMAVTEPGAGAGAGQH
241
- >NM_001861.5:303-431
242
- IVLLPHDNERGETDEEHGTAHNRLPLVRAPVHLSKALLELNAI
243
- >NM_001861.5:303-431_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:7142-7270
244
- IVLLPHDNERGETDEEHGTAHNRLPLVRAPVHLSKALLELNAI
245
- >gi|2738491|gb|AF005889.1|HCOX4GN:7142-7270
246
- IVLLPHDNERGETDEEHGTAHNRLPLVRAPVHLSKALLELNAI
247
- >NM_001861.5:132-227
248
- RQVLDMGHLRQGVVTPIHISWERKVFALHNTF
249
- >NM_001861.5:132-227_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:6342-6437
250
- RQVLDMGHLRQGVVTPIHISWERKVFALHNTF
251
- >gi|2738491|gb|AF005889.1|HCOX4GN:6342-6437
252
- RQVLDMGHLRQGVVTPIHISWERKVFALHNTF
253
- >NM_001861.5:432-518
254
- DGVHLHVQHPLGLLGHPLFVKALREGAVH
255
- >NM_001861.5:432-518_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8143-8229
256
- DGVHLHVQHPLGLLGHPLFVKALREGAVH
257
- >gi|2738491|gb|AF005889.1|HCOX4GN:8143-8229
258
- DGVHLHVQHPLGLLGHPLFVKALREGAVH
259
- >NM_001861.5:57-131
260
- MSSYTHRGGNCSLAN*AKYPGSQHS
261
- >NM_001861.5:57-131_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:2612-2686
262
- MSSYTHRGGNCSLAN*AKYPGSQHS
263
- >gi|2738491|gb|AF005889.1|HCOX4GN:2612-2686
264
- MSSYTHRGGNCSLAN*AKYPGSQHS
265
- >NM_001861.5:3-56
266
- AATARRDRPLHPVSRDRK
267
- >NM_001861.5:3-56_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:1105-1158
268
- AATARRDRPLHPVSRDRK
269
- >gi|2738491|gb|AF005889.1|HCOX4GN:1105-1158
270
- AATARRDRPLHPVSRDRK
271
- >NM_001861.5:223-300
272
- TRLSHPWRGCXXXXXXXXXXXSGWQT
273
- >NM_001861.5:223-300_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:6433-6510
274
- TRLSHPWRGCSRRPSPSPS+PSGWQT
275
- >gi|2738491|gb|AF005889.1|HCOX4GN:6433-6510
276
- TRLSHPWRGCSRRPSPSPSVPSGWQT
277
- >NM_001861.5:434-748
278
- VRPPPAKL*QRVGGQADQEDAGHEGEPHPGLSLQVGLRKERVEEVRDAGLRLHLRLALSPPCNSMPIYWKPVMPNSCTTANK*PVYLKPFVISSLMIPK*KLIKT
279
- >NM_001861.5:434-748_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8145-8459
280
- VRPPPAKL*QRVGGQADQEDAGHEGEPHPGLSLQVGLRKERVEEVRDAGLRLHLRLALSPPCNSMPIYWKPVMPNSCTTANK*PVYLKPFVISSLMIPK*KLIKT
281
- >gi|2738491|gb|AF005889.1|HCOX4GN:8145-8459
282
- VRPPPAKL*QRVGGQADQEDAGHEGEPHPGLSLQVGLRKERVEEVRDAGLRLHLRLALSPPCNSMPIYWKPVMPNSCTTANK*PVYLKPFVISSLMIPK*KLIKT
283
- >NM_001861.5:60-131
284
- MLATRVFSLVGKRAISTSVCVRAH
285
- >NM_001861.5:60-131_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:2615-2686
286
- MLATRVFSLVGKRAISTSVCVRAH
287
- >gi|2738491|gb|AF005889.1|HCOX4GN:2615-2686
288
- MLATRVFSLVGKRAISTSVCVRAH
289
- >NM_001861.5:134-175
290
- KCCEERRLFAPSLY
291
- >NM_001861.5:134-175_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:6344-6385
292
- KCCEERRLFAPSLY
293
- >gi|2738491|gb|AF005889.1|HCOX4GN:6344-6385
294
- KCCEERRLFAPSLY
295
- >NM_001861.5:611-748
296
- CFN*LSFRYH*RTDHKGFQVNWSFISSGTTVWHNRFPVNRHGVAWR
297
- >NM_001861.5:611-748_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8322-8459
298
- CFN*LSFRYH*RTDHKGFQVNWSFISSGTTVWHNRFPVNRHGVAWR
299
- >gi|2738491|gb|AF005889.1|HCOX4GN:8322-8459
300
- CFN*LSFRYH*RTDHKGFQVNWSFISSGTTVWHNRFPVNRHGVAWR
301
- >NM_001861.5:56-136
302
- LS*ARTHTEVEIARLPTRLNTLVANIL
303
- >NM_001861.5:56-136_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:2611-2691
304
- L *ARTHTEVEIARLPTRLNTLVANIL
305
- >gi|2738491|gb|AF005889.1|HCOX4GN:2611-2691
306
- LP*ARTHTEVEIARLPTRLNTLVANIL
307
- >NM_001861.5:133-180
308
- DPYKLGAKSLRSSQHF
309
- >NM_001861.5:133-180_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:6343-6390
310
- DPYKLGAKSLRSSQHF
311
- >gi|2738491|gb|AF005889.1|HCOX4GN:6343-6390
312
- DPYKLGAKSLRSSQHF
313
- >NM_001861.5:433-468
314
- TLCQSFAGGGRT
315
- >NM_001861.5:433-468_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8144-8179
316
- TLCQSFAGGGRT
317
- >gi|2738491|gb|AF005889.1|HCOX4GN:8144-8179
318
- TLCQSFAGGGRT