sequenceserver 2.0.0.rc7 → 2.0.0.rc8

Sign up to get free protection for your applications and to get access to all the features.
Files changed (530) hide show
  1. checksums.yaml +4 -4
  2. data/bin/chromedriver +0 -0
  3. data/bin/geckodriver +0 -0
  4. data/bin/sequenceserver +31 -4
  5. data/lib/sequenceserver.rb +6 -1
  6. data/lib/sequenceserver/database.rb +7 -42
  7. data/lib/sequenceserver/exceptions.rb +14 -0
  8. data/lib/sequenceserver/makeblastdb.rb +121 -41
  9. data/lib/sequenceserver/routes.rb +1 -1
  10. data/lib/sequenceserver/version.rb +1 -1
  11. data/public/css/sequenceserver.css +8 -2
  12. data/public/css/sequenceserver.min.css +1 -1
  13. data/public/js/jquery_world.js +1 -1
  14. data/public/js/report.js +1 -2
  15. data/public/js/search.js +40 -18
  16. data/public/js/sidebar.js +50 -26
  17. data/public/sequenceserver-report.min.js +17 -17
  18. data/public/sequenceserver-search.min.js +2 -2
  19. data/views/layout.erb +1 -1
  20. data/views/report.erb +1 -1
  21. data/views/search.erb +1 -1
  22. metadata +4 -510
  23. data/.bootstrap/config.json +0 -433
  24. data/.codeclimate.yml +0 -31
  25. data/.csslintrc +0 -2
  26. data/.dockerignore +0 -1
  27. data/.eslintignore +0 -1
  28. data/.eslintrc.json +0 -36
  29. data/.gitignore +0 -56
  30. data/.mailmap +0 -5
  31. data/.rspec +0 -3
  32. data/.rubocop.yml +0 -61
  33. data/.travis.yml +0 -74
  34. data/AppImage/recipe.yml +0 -15
  35. data/AppImage/sequenceserver.desktop +0 -8
  36. data/AppImage/sequenceserver.png +0 -0
  37. data/AppImage/sequenceserver.sh +0 -16
  38. data/Dockerfile +0 -25
  39. data/LICENSE.txt +0 -661
  40. data/LICENSE/Apache.txt +0 -176
  41. data/LICENSE/d3.txt +0 -26
  42. data/README.md +0 -161
  43. data/package.json +0 -48
  44. data/public/vendor/.dependencies.json +0 -18
  45. data/public/vendor/.loaderversions +0 -1
  46. data/public/vendor/github/components/jquery@2.1.4/.gitignore +0 -1
  47. data/public/vendor/github/components/jquery@2.1.4/.jspm-hash +0 -1
  48. data/public/vendor/github/components/jquery@2.1.4/.jspm.json +0 -37
  49. data/public/vendor/github/components/jqueryui@1.11.4/.gitignore +0 -4
  50. data/public/vendor/github/components/jqueryui@1.11.4/.jspm-hash +0 -1
  51. data/public/vendor/github/components/jqueryui@1.11.4/.jspm.json +0 -136
  52. data/public/vendor/github/components/jqueryui@1.11.4/ui/.jshintrc +0 -24
  53. data/public/vendor/github/jspm/nodelibs-buffer@0.1.0/.jspm-hash +0 -1
  54. data/public/vendor/github/jspm/nodelibs-buffer@0.1.0/.jspm.json +0 -10
  55. data/public/vendor/github/jspm/nodelibs-events@0.1.1/.jspm-hash +0 -1
  56. data/public/vendor/github/jspm/nodelibs-events@0.1.1/.jspm.json +0 -10
  57. data/public/vendor/github/jspm/nodelibs-fs@0.1.2/.jspm-hash +0 -1
  58. data/public/vendor/github/jspm/nodelibs-module@0.1.0/.jspm-hash +0 -1
  59. data/public/vendor/github/jspm/nodelibs-module@0.1.0/.jspm.json +0 -3
  60. data/public/vendor/github/jspm/nodelibs-path@0.1.0/.jspm-hash +0 -1
  61. data/public/vendor/github/jspm/nodelibs-path@0.1.0/.jspm.json +0 -10
  62. data/public/vendor/github/jspm/nodelibs-process@0.1.1/.jspm-hash +0 -1
  63. data/public/vendor/github/jspm/nodelibs-stream@0.1.0/.jspm-hash +0 -1
  64. data/public/vendor/github/jspm/nodelibs-stream@0.1.0/.jspm.json +0 -10
  65. data/public/vendor/github/jspm/nodelibs-util@0.1.0/.jspm-hash +0 -1
  66. data/public/vendor/github/jspm/nodelibs-util@0.1.0/.jspm.json +0 -10
  67. data/public/vendor/github/mbostock/d3@3.5.6/.jspm-hash +0 -1
  68. data/public/vendor/github/mbostock/d3@3.5.6/.jspm.json +0 -76
  69. data/public/vendor/github/nicgirault/circosJs@1.7.0/.gitignore +0 -10
  70. data/public/vendor/github/nicgirault/circosJs@1.7.0/.jspm-hash +0 -1
  71. data/public/vendor/github/systemjs/plugin-css@0.1.15/.gitignore +0 -1
  72. data/public/vendor/github/systemjs/plugin-css@0.1.15/.jspm-hash +0 -1
  73. data/public/vendor/github/systemjs/plugin-css@0.1.15/.jspm.json +0 -4
  74. data/public/vendor/github/systemjs/plugin-json@0.1.0/.jspm-hash +0 -1
  75. data/public/vendor/github/twbs/bootstrap@3.3.5/.jspm-hash +0 -1
  76. data/public/vendor/github/twbs/bootstrap@3.3.5/.jspm.json +0 -100
  77. data/public/vendor/npm/amdefine@1.0.0/.jspm-hash +0 -1
  78. data/public/vendor/npm/amdefine@1.0.0/.jspm.json +0 -55
  79. data/public/vendor/npm/babel-core@5.8.23/.jspm-hash +0 -1
  80. data/public/vendor/npm/babel-runtime@5.8.20/.jspm-hash +0 -1
  81. data/public/vendor/npm/babel-runtime@5.8.20/.npmignore +0 -2
  82. data/public/vendor/npm/base62@0.1.1/.jspm-hash +0 -1
  83. data/public/vendor/npm/base62@0.1.1/.jspm.json +0 -49
  84. data/public/vendor/npm/base62@0.1.1/.travis.yml +0 -4
  85. data/public/vendor/npm/base64-js@0.0.8/.jspm-hash +0 -1
  86. data/public/vendor/npm/base64-js@0.0.8/.jspm.json +0 -77
  87. data/public/vendor/npm/base64-js@0.0.8/.travis.yml +0 -5
  88. data/public/vendor/npm/buffer@3.4.3/.jspm-hash +0 -1
  89. data/public/vendor/npm/buffer@3.4.3/.jspm.json +0 -105
  90. data/public/vendor/npm/buffer@3.4.3/.npmignore +0 -1
  91. data/public/vendor/npm/buffer@3.4.3/.travis.yml +0 -8
  92. data/public/vendor/npm/buffer@3.4.3/.zuul.yml +0 -20
  93. data/public/vendor/npm/core-js@1.1.2/.eslintrc +0 -36
  94. data/public/vendor/npm/core-js@1.1.2/.gitattributes +0 -1
  95. data/public/vendor/npm/core-js@1.1.2/.jspm-hash +0 -1
  96. data/public/vendor/npm/core-js@1.1.2/.npmignore +0 -10
  97. data/public/vendor/npm/core-js@1.1.2/.travis.yml +0 -3
  98. data/public/vendor/npm/core-util-is@1.0.1/.jspm-hash +0 -1
  99. data/public/vendor/npm/core-util-is@1.0.1/.jspm.json +0 -58
  100. data/public/vendor/npm/envify@3.4.0/.jspm-hash +0 -1
  101. data/public/vendor/npm/envify@3.4.0/.jspm.json +0 -72
  102. data/public/vendor/npm/envify@3.4.0/.npmignore +0 -2
  103. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/.jspm-hash +0 -1
  104. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/.jspm.json +0 -102
  105. data/public/vendor/npm/events@1.0.2/.jspm-hash +0 -1
  106. data/public/vendor/npm/events@1.0.2/.jspm.json +0 -67
  107. data/public/vendor/npm/events@1.0.2/.npmignore +0 -1
  108. data/public/vendor/npm/events@1.0.2/.travis.yml +0 -7
  109. data/public/vendor/npm/events@1.0.2/.zuul.yml +0 -12
  110. data/public/vendor/npm/font-awesome@4.4.0/.jspm-hash +0 -1
  111. data/public/vendor/npm/font-awesome@4.4.0/.jspm.json +0 -81
  112. data/public/vendor/npm/font-awesome@4.4.0/.npmignore +0 -42
  113. data/public/vendor/npm/ieee754@1.1.6/.jspm-hash +0 -1
  114. data/public/vendor/npm/ieee754@1.1.6/.jspm.json +0 -70
  115. data/public/vendor/npm/ieee754@1.1.6/.travis.yml +0 -7
  116. data/public/vendor/npm/ieee754@1.1.6/.zuul.yml +0 -20
  117. data/public/vendor/npm/inherits@2.0.1/.jspm-hash +0 -1
  118. data/public/vendor/npm/inherits@2.0.1/.jspm.json +0 -60
  119. data/public/vendor/npm/is-array@1.0.1/.jepso-ci.json +0 -3
  120. data/public/vendor/npm/is-array@1.0.1/.jspm-hash +0 -1
  121. data/public/vendor/npm/is-array@1.0.1/.jspm.json +0 -42
  122. data/public/vendor/npm/is-array@1.0.1/.npmignore +0 -0
  123. data/public/vendor/npm/isarray@0.0.1/.jspm-hash +0 -1
  124. data/public/vendor/npm/isarray@0.0.1/.jspm.json +0 -51
  125. data/public/vendor/npm/jstransform@10.1.0/.jshintrc +0 -28
  126. data/public/vendor/npm/jstransform@10.1.0/.jspm-hash +0 -1
  127. data/public/vendor/npm/jstransform@10.1.0/.jspm.json +0 -95
  128. data/public/vendor/npm/jstransform@10.1.0/.npmignore +0 -4
  129. data/public/vendor/npm/jstransform@10.1.0/.travis.yml +0 -8
  130. data/public/vendor/npm/path-browserify@0.0.0/.jspm-hash +0 -1
  131. data/public/vendor/npm/path-browserify@0.0.0/.jspm.json +0 -56
  132. data/public/vendor/npm/process@0.10.1/.jspm-hash +0 -1
  133. data/public/vendor/npm/react@0.13.3/.jspm-hash +0 -1
  134. data/public/vendor/npm/react@0.13.3/.jspm.json +0 -77
  135. data/public/vendor/npm/readable-stream@1.1.13/.jspm-hash +0 -1
  136. data/public/vendor/npm/readable-stream@1.1.13/.jspm.json +0 -95
  137. data/public/vendor/npm/readable-stream@1.1.13/.npmignore +0 -5
  138. data/public/vendor/npm/source-map@0.1.31/.jspm-hash +0 -1
  139. data/public/vendor/npm/source-map@0.1.31/.jspm.json +0 -133
  140. data/public/vendor/npm/source-map@0.1.31/.npmignore +0 -2
  141. data/public/vendor/npm/source-map@0.1.31/.travis.yml +0 -4
  142. data/public/vendor/npm/stream-browserify@1.0.0/.jspm-hash +0 -1
  143. data/public/vendor/npm/stream-browserify@1.0.0/.jspm.json +0 -77
  144. data/public/vendor/npm/stream-browserify@1.0.0/.travis.yml +0 -4
  145. data/public/vendor/npm/string_decoder@0.10.31/.jspm-hash +0 -1
  146. data/public/vendor/npm/string_decoder@0.10.31/.jspm.json +0 -58
  147. data/public/vendor/npm/string_decoder@0.10.31/.npmignore +0 -2
  148. data/public/vendor/npm/through@2.3.8/.jspm-hash +0 -1
  149. data/public/vendor/npm/through@2.3.8/.jspm.json +0 -72
  150. data/public/vendor/npm/through@2.3.8/.travis.yml +0 -5
  151. data/public/vendor/npm/underscore@1.8.3/.jspm-hash +0 -1
  152. data/public/vendor/npm/underscore@1.8.3/.jspm.json +0 -74
  153. data/public/vendor/npm/util@0.10.3/.jspm-hash +0 -1
  154. data/public/vendor/npm/util@0.10.3/.jspm.json +0 -58
  155. data/public/vendor/npm/util@0.10.3/.npmignore +0 -1
  156. data/public/vendor/npm/util@0.10.3/.travis.yml +0 -8
  157. data/public/vendor/npm/util@0.10.3/.zuul.yml +0 -10
  158. data/public/vendor/npm/webshim@1.15.8/.gitattributes +0 -12
  159. data/public/vendor/npm/webshim@1.15.8/.jspm-hash +0 -1
  160. data/public/vendor/npm/webshim@1.15.8/.jspm.json +0 -92
  161. data/public/vendor/npm/webshim@1.15.8/.npmignore +0 -16
  162. data/public/vendor/npm/webshim@1.15.8/.project +0 -12
  163. data/public/vendor/npm/webshim@1.15.8/demos/demos/filereader/upload/.keep +0 -0
  164. data/sequenceserver.gemspec +0 -55
  165. data/spec/blast_versions/blast_2.2.30/blast_2.2.30_spec.rb +0 -228
  166. data/spec/blast_versions/blast_2.2.30/import_spec_capybara_local_2.2.30.rb +0 -583
  167. data/spec/blast_versions/blast_2.2.31/blast_2.2.31_spec.rb +0 -228
  168. data/spec/blast_versions/blast_2.2.31/import_spec_capybara_local_2.2.31.rb +0 -587
  169. data/spec/blast_versions/blast_2.3.0/blast_2.3.0_spec.rb +0 -229
  170. data/spec/blast_versions/blast_2.3.0/import_spec_capybara_local_2.3.0.rb +0 -587
  171. data/spec/blast_versions/blast_2.4.0/blast_2.4.0_spec.rb +0 -228
  172. data/spec/blast_versions/blast_2.4.0/import_spec_capybara_local_2.4.0.rb +0 -588
  173. data/spec/blast_versions/blast_2.5.0/blast_2.5.0_spec.rb +0 -228
  174. data/spec/blast_versions/blast_2.5.0/import_spec_capybara_local_2.5.0.rb +0 -587
  175. data/spec/blast_versions/blast_2.6.0/blast_2.6.0_spec.rb +0 -228
  176. data/spec/blast_versions/blast_2.6.0/import_spec_capybara_local_2.6.0.rb +0 -587
  177. data/spec/blast_versions/blast_2.7.1/blast_2.7.1_spec.rb +0 -228
  178. data/spec/blast_versions/blast_2.7.1/import_spec_capybara_local_2.7.1.rb +0 -587
  179. data/spec/blast_versions/blast_2.8.1/blast_2.8.1_spec.rb +0 -228
  180. data/spec/blast_versions/blast_2.8.1/import_spec_capybara_local_2.8.1.rb +0 -587
  181. data/spec/blast_versions/blast_2.9.0/blast_2.9.0_spec.rb +0 -228
  182. data/spec/blast_versions/blast_2.9.0/import_spec_capybara_local_2.9.0.rb +0 -585
  183. data/spec/blast_versions/diamond_0.9.24/diamond_0.9.24_spec.rb +0 -176
  184. data/spec/blast_versions/diamond_0.9.24/import_spec_capybara_local_0.9.24.rb +0 -237
  185. data/spec/capybara_spec.rb +0 -345
  186. data/spec/config_spec.rb +0 -87
  187. data/spec/database/funky_ids/funky_ids.fa +0 -16
  188. data/spec/database/funky_ids/v4/funky_ids.fa.nhd +0 -8
  189. data/spec/database/funky_ids/v4/funky_ids.fa.nhi +0 -0
  190. data/spec/database/funky_ids/v4/funky_ids.fa.nhr +0 -0
  191. data/spec/database/funky_ids/v4/funky_ids.fa.nin +0 -0
  192. data/spec/database/funky_ids/v4/funky_ids.fa.nog +0 -0
  193. data/spec/database/funky_ids/v4/funky_ids.fa.nsd +0 -15
  194. data/spec/database/funky_ids/v4/funky_ids.fa.nsi +0 -0
  195. data/spec/database/funky_ids/v4/funky_ids.fa.nsq +0 -0
  196. data/spec/database/funky_ids/v5/funky_ids.fa.ndb +0 -0
  197. data/spec/database/funky_ids/v5/funky_ids.fa.nhd +0 -8
  198. data/spec/database/funky_ids/v5/funky_ids.fa.nhi +0 -0
  199. data/spec/database/funky_ids/v5/funky_ids.fa.nhr +0 -0
  200. data/spec/database/funky_ids/v5/funky_ids.fa.nin +0 -0
  201. data/spec/database/funky_ids/v5/funky_ids.fa.nog +0 -0
  202. data/spec/database/funky_ids/v5/funky_ids.fa.nos +0 -0
  203. data/spec/database/funky_ids/v5/funky_ids.fa.not +0 -0
  204. data/spec/database/funky_ids/v5/funky_ids.fa.nsq +0 -0
  205. data/spec/database/funky_ids/v5/funky_ids.fa.ntf +0 -0
  206. data/spec/database/funky_ids/v5/funky_ids.fa.nto +0 -0
  207. data/spec/database/funky_sequences/README.md +0 -14
  208. data/spec/database/funky_sequences/funky_aa_sequences.fa +0 -7
  209. data/spec/database/funky_sequences/funky_aa_sequences.fa.phd +0 -3
  210. data/spec/database/funky_sequences/funky_aa_sequences.fa.phi +0 -0
  211. data/spec/database/funky_sequences/funky_aa_sequences.fa.phr +0 -0
  212. data/spec/database/funky_sequences/funky_aa_sequences.fa.pin +0 -0
  213. data/spec/database/funky_sequences/funky_aa_sequences.fa.pog +0 -0
  214. data/spec/database/funky_sequences/funky_aa_sequences.fa.psd +0 -6
  215. data/spec/database/funky_sequences/funky_aa_sequences.fa.psi +0 -0
  216. data/spec/database/funky_sequences/funky_aa_sequences.fa.psq +0 -0
  217. data/spec/database/funky_sequences/funky_na_sequences.fa +0 -2
  218. data/spec/database/funky_sequences/funky_na_sequences.fa.nhr +0 -0
  219. data/spec/database/funky_sequences/funky_na_sequences.fa.nin +0 -0
  220. data/spec/database/funky_sequences/funky_na_sequences.fa.nog +0 -0
  221. data/spec/database/funky_sequences/funky_na_sequences.fa.nsd +0 -2
  222. data/spec/database/funky_sequences/funky_na_sequences.fa.nsi +0 -0
  223. data/spec/database/funky_sequences/funky_na_sequences.fa.nsq +0 -0
  224. data/spec/database/ox_parse_error/query.fa +0 -1
  225. data/spec/database/ox_parse_error/rand1.fa +0 -2
  226. data/spec/database/ox_parse_error/rand1.fa.nhd +0 -1
  227. data/spec/database/ox_parse_error/rand1.fa.nhi +0 -0
  228. data/spec/database/ox_parse_error/rand1.fa.nhr +0 -0
  229. data/spec/database/ox_parse_error/rand1.fa.nin +0 -0
  230. data/spec/database/ox_parse_error/rand1.fa.nog +0 -0
  231. data/spec/database/ox_parse_error/rand1.fa.nsd +0 -2
  232. data/spec/database/ox_parse_error/rand1.fa.nsi +0 -0
  233. data/spec/database/ox_parse_error/rand1.fa.nsq +0 -0
  234. data/spec/database/ox_parse_error/rand2.fa +0 -2
  235. data/spec/database/ox_parse_error/rand2.fa.nhd +0 -1
  236. data/spec/database/ox_parse_error/rand2.fa.nhi +0 -0
  237. data/spec/database/ox_parse_error/rand2.fa.nhr +0 -0
  238. data/spec/database/ox_parse_error/rand2.fa.nin +0 -0
  239. data/spec/database/ox_parse_error/rand2.fa.nog +0 -0
  240. data/spec/database/ox_parse_error/rand2.fa.nsd +0 -2
  241. data/spec/database/ox_parse_error/rand2.fa.nsi +0 -0
  242. data/spec/database/ox_parse_error/rand2.fa.nsq +0 -0
  243. data/spec/database/ox_parse_error_unique_ids/query.fa +0 -1
  244. data/spec/database/ox_parse_error_unique_ids/rand1.fa +0 -2
  245. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nhd +0 -1
  246. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nhi +0 -0
  247. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nhr +0 -0
  248. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nin +0 -0
  249. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nog +0 -0
  250. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nsd +0 -2
  251. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nsi +0 -0
  252. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nsq +0 -0
  253. data/spec/database/ox_parse_error_unique_ids/rand2.fa +0 -2
  254. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nhd +0 -1
  255. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nhi +0 -0
  256. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nhr +0 -0
  257. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nin +0 -0
  258. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nog +0 -0
  259. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nsd +0 -2
  260. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nsi +0 -0
  261. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nsq +0 -0
  262. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa +0 -6
  263. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhd +0 -1
  264. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhi +0 -0
  265. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhr +0 -0
  266. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nin +0 -0
  267. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nog +0 -0
  268. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsd +0 -2
  269. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsi +0 -0
  270. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsq +0 -0
  271. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.ndb +0 -0
  272. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhd +0 -8
  273. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhi +0 -0
  274. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhr +0 -0
  275. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nin +0 -0
  276. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nog +0 -0
  277. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nos +0 -0
  278. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.not +0 -0
  279. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nsq +0 -0
  280. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.ntf +0 -0
  281. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nto +0 -0
  282. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.txt +0 -8
  283. data/spec/database/sample/links.rb +0 -23
  284. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta +0 -6449
  285. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.pdb +0 -0
  286. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.phd +0 -1189
  287. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.phi +0 -0
  288. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.phr +0 -0
  289. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.pin +0 -0
  290. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.pog +0 -0
  291. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.pos +0 -0
  292. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.pot +0 -0
  293. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.psq +0 -0
  294. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.ptf +0 -0
  295. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.pto +0 -0
  296. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.pdb +0 -0
  297. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.phd +0 -9140
  298. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.phi +0 -0
  299. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.phr +0 -0
  300. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.pin +0 -0
  301. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.pog +0 -0
  302. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.pos +0 -0
  303. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.pot +0 -0
  304. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.psq +0 -0
  305. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.ptf +0 -0
  306. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.pto +0 -0
  307. data/spec/database/sample/proteins/uniprot/URL +0 -1
  308. data/spec/database/sample/si_uniprot_idmap.yml +0 -14180
  309. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta +0 -5486
  310. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.ndb +0 -0
  311. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nhd +0 -473
  312. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nhi +0 -0
  313. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nhr +0 -0
  314. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nin +0 -0
  315. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nog +0 -0
  316. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nos +0 -0
  317. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.not +0 -0
  318. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nsq +0 -0
  319. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.ntf +0 -0
  320. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nto +0 -0
  321. data/spec/database/unformatted/Cardiocondyla_obscurior/Cobs1.4.proteins.fa +0 -148303
  322. data/spec/database/v4/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhd +0 -8
  323. data/spec/database/v4/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhi +0 -0
  324. data/spec/database/v4/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhr +0 -0
  325. data/spec/database/v4/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nin +0 -0
  326. data/spec/database/v4/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nog +0 -0
  327. data/spec/database/v4/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nsd +0 -16
  328. data/spec/database/v4/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nsi +0 -0
  329. data/spec/database/v4/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nsq +0 -0
  330. data/spec/database/v4/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.txt +0 -8
  331. data/spec/database/v4/links.rb +0 -23
  332. data/spec/database/v4/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta +0 -6449
  333. data/spec/database/v4/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.phd +0 -1189
  334. data/spec/database/v4/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.phi +0 -0
  335. data/spec/database/v4/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.phr +0 -0
  336. data/spec/database/v4/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.pin +0 -0
  337. data/spec/database/v4/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.pog +0 -0
  338. data/spec/database/v4/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.psd +0 -2378
  339. data/spec/database/v4/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.psi +0 -0
  340. data/spec/database/v4/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.psq +0 -0
  341. data/spec/database/v4/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.phd +0 -9140
  342. data/spec/database/v4/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.phi +0 -0
  343. data/spec/database/v4/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.phr +0 -0
  344. data/spec/database/v4/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.pin +0 -0
  345. data/spec/database/v4/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.pog +0 -0
  346. data/spec/database/v4/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.psd +0 -18280
  347. data/spec/database/v4/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.psi +0 -0
  348. data/spec/database/v4/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.psq +0 -0
  349. data/spec/database/v4/proteins/uniprot/URL +0 -1
  350. data/spec/database/v4/si_uniprot_idmap.yml +0 -14180
  351. data/spec/database/v4/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta +0 -5486
  352. data/spec/database/v4/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nhd +0 -473
  353. data/spec/database/v4/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nhi +0 -0
  354. data/spec/database/v4/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nhr +0 -0
  355. data/spec/database/v4/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nin +0 -0
  356. data/spec/database/v4/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nog +0 -0
  357. data/spec/database/v4/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nsd +0 -946
  358. data/spec/database/v4/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nsi +0 -0
  359. data/spec/database/v4/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nsq +0 -0
  360. data/spec/database/without_parse_seqids/without_parse_seqids.fa +0 -10
  361. data/spec/database/without_parse_seqids/without_parse_seqids.fa.phr +0 -0
  362. data/spec/database/without_parse_seqids/without_parse_seqids.fa.pin +0 -0
  363. data/spec/database/without_parse_seqids/without_parse_seqids.fa.psq +0 -0
  364. data/spec/database_spec.rb +0 -51
  365. data/spec/doctor_spec.disabled.rb +0 -107
  366. data/spec/dotdir/blast_2.2.30/blastn/BLASTN_XML_2.2.30.xml +0 -1201
  367. data/spec/dotdir/blast_2.2.30/blastn/job.yaml +0 -8
  368. data/spec/dotdir/blast_2.2.30/blastn_nohits/BLASTN_NO_HITS_XML_2.2.30.xml +0 -866
  369. data/spec/dotdir/blast_2.2.30/blastn_nohits/job.yaml +0 -8
  370. data/spec/dotdir/blast_2.2.30/blastp/BLASTP_XML_2.2.30.xml +0 -1181
  371. data/spec/dotdir/blast_2.2.30/blastp/job.yaml +0 -8
  372. data/spec/dotdir/blast_2.2.30/blastx/BLASTX_XML_2.2.30.xml +0 -1181
  373. data/spec/dotdir/blast_2.2.30/blastx/job.yaml +0 -8
  374. data/spec/dotdir/blast_2.2.30/tblastn/TBLASTN_XML_2.2.30.xml +0 -1181
  375. data/spec/dotdir/blast_2.2.30/tblastn/job.yaml +0 -8
  376. data/spec/dotdir/blast_2.2.30/tblastx/TBLASTX_XML_2.2.30.xml +0 -8857
  377. data/spec/dotdir/blast_2.2.30/tblastx/job.yaml +0 -8
  378. data/spec/dotdir/blast_2.2.31/blastn/BLASTN_XML_2.2.31.xml +0 -1201
  379. data/spec/dotdir/blast_2.2.31/blastn/job.yaml +0 -8
  380. data/spec/dotdir/blast_2.2.31/blastn_nohits/BLASTN_NO_HITS_XML_2.2.31.xml +0 -866
  381. data/spec/dotdir/blast_2.2.31/blastn_nohits/job.yaml +0 -8
  382. data/spec/dotdir/blast_2.2.31/blastp/BLASTP_XML_2.2.31.xml +0 -1181
  383. data/spec/dotdir/blast_2.2.31/blastp/job.yaml +0 -8
  384. data/spec/dotdir/blast_2.2.31/blastx/BLASTX_XML_2.2.31.xml +0 -1181
  385. data/spec/dotdir/blast_2.2.31/blastx/job.yaml +0 -8
  386. data/spec/dotdir/blast_2.2.31/tblastn/TBLASTN_XML_2.2.31.xml +0 -1181
  387. data/spec/dotdir/blast_2.2.31/tblastn/job.yaml +0 -8
  388. data/spec/dotdir/blast_2.2.31/tblastx/TBLASTX_XML_2.2.31.xml +0 -8857
  389. data/spec/dotdir/blast_2.2.31/tblastx/job.yaml +0 -8
  390. data/spec/dotdir/blast_2.3.0/blastn/BLASTN_XML_2.3.0.xml +0 -1201
  391. data/spec/dotdir/blast_2.3.0/blastn/job.yaml +0 -8
  392. data/spec/dotdir/blast_2.3.0/blastn_nohits/BLASTN_NO_HITS_XML_2.3.0.xml +0 -866
  393. data/spec/dotdir/blast_2.3.0/blastn_nohits/job.yaml +0 -8
  394. data/spec/dotdir/blast_2.3.0/blastp/BLASTP_XML_2.3.0.xml +0 -1181
  395. data/spec/dotdir/blast_2.3.0/blastp/job.yaml +0 -8
  396. data/spec/dotdir/blast_2.3.0/blastx/BLASTX_XML_2.3.0.xml +0 -1181
  397. data/spec/dotdir/blast_2.3.0/blastx/job.yaml +0 -8
  398. data/spec/dotdir/blast_2.3.0/tblastn/TBLASTN_XML_2.3.0.xml +0 -1181
  399. data/spec/dotdir/blast_2.3.0/tblastn/job.yaml +0 -8
  400. data/spec/dotdir/blast_2.3.0/tblastx/TBLASTX_XML_2.3.0.xml +0 -8857
  401. data/spec/dotdir/blast_2.3.0/tblastx/job.yaml +0 -8
  402. data/spec/dotdir/blast_2.4.0/blastn/BLASTN_XML_2.4.0.xml +0 -1201
  403. data/spec/dotdir/blast_2.4.0/blastn/job.yaml +0 -8
  404. data/spec/dotdir/blast_2.4.0/blastn_nohits/BLASTN_NO_HITS_XML_2.4.0.xml +0 -866
  405. data/spec/dotdir/blast_2.4.0/blastn_nohits/job.yaml +0 -8
  406. data/spec/dotdir/blast_2.4.0/blastp/BLASTP_XML_2.4.0.xml +0 -1181
  407. data/spec/dotdir/blast_2.4.0/blastp/job.yaml +0 -8
  408. data/spec/dotdir/blast_2.4.0/blastx/BLASTX_XML_2.4.0.xml +0 -1181
  409. data/spec/dotdir/blast_2.4.0/blastx/job.yaml +0 -8
  410. data/spec/dotdir/blast_2.4.0/tblastn/TBLASTN_XML_2.4.0.xml +0 -1181
  411. data/spec/dotdir/blast_2.4.0/tblastn/job.yaml +0 -8
  412. data/spec/dotdir/blast_2.4.0/tblastx/TBLASTX_XML_2.4.0.xml +0 -8857
  413. data/spec/dotdir/blast_2.4.0/tblastx/job.yaml +0 -8
  414. data/spec/dotdir/blast_2.5.0/blastn/BLASTN_XML_2.5.0.xml +0 -1201
  415. data/spec/dotdir/blast_2.5.0/blastn/job.yaml +0 -8
  416. data/spec/dotdir/blast_2.5.0/blastn_nohits/BLASTN_NO_HITS_XML_2.5.0.xml +0 -866
  417. data/spec/dotdir/blast_2.5.0/blastn_nohits/job.yaml +0 -8
  418. data/spec/dotdir/blast_2.5.0/blastp/BLASTP +0 -2161
  419. data/spec/dotdir/blast_2.5.0/blastp/BLASTP_XML_2.5.0.xml +0 -1181
  420. data/spec/dotdir/blast_2.5.0/blastp/job.yaml +0 -8
  421. data/spec/dotdir/blast_2.5.0/blastx/BLASTX +0 -28080
  422. data/spec/dotdir/blast_2.5.0/blastx/BLASTX_XML_2.5.0.xml +0 -1181
  423. data/spec/dotdir/blast_2.5.0/blastx/job.yaml +0 -8
  424. data/spec/dotdir/blast_2.5.0/tblastn/TBLASTN +0 -29486
  425. data/spec/dotdir/blast_2.5.0/tblastn/TBLASTN_XML_2.5.0.xml +0 -1181
  426. data/spec/dotdir/blast_2.5.0/tblastn/job.yaml +0 -8
  427. data/spec/dotdir/blast_2.5.0/tblastx/TBLASTX +0 -180859
  428. data/spec/dotdir/blast_2.5.0/tblastx/TBLASTX_XML_2.5.0.xml +0 -8857
  429. data/spec/dotdir/blast_2.5.0/tblastx/job.yaml +0 -8
  430. data/spec/dotdir/blast_2.6.0/blastn/BLASTN_XML_2.6.0.xml +0 -1201
  431. data/spec/dotdir/blast_2.6.0/blastn/job.yaml +0 -8
  432. data/spec/dotdir/blast_2.6.0/blastn_nohits/BLASTN_NO_HITS_XML_2.6.0.xml +0 -866
  433. data/spec/dotdir/blast_2.6.0/blastn_nohits/job.yaml +0 -8
  434. data/spec/dotdir/blast_2.6.0/blastp/BLASTP_XML_2.6.0.xml +0 -1181
  435. data/spec/dotdir/blast_2.6.0/blastp/job.yaml +0 -8
  436. data/spec/dotdir/blast_2.6.0/blastx/BLASTX_XML_2.6.0.xml +0 -1181
  437. data/spec/dotdir/blast_2.6.0/blastx/job.yaml +0 -8
  438. data/spec/dotdir/blast_2.6.0/tblastn/TBLASTN_XML_2.6.0.xml +0 -1181
  439. data/spec/dotdir/blast_2.6.0/tblastn/job.yaml +0 -8
  440. data/spec/dotdir/blast_2.6.0/tblastx/TBLASTX_XML_2.6.0.xml +0 -8857
  441. data/spec/dotdir/blast_2.6.0/tblastx/job.yaml +0 -8
  442. data/spec/dotdir/blast_2.7.1/blastn/BLASTN_XML_2.7.1.xml +0 -1201
  443. data/spec/dotdir/blast_2.7.1/blastn/job.yaml +0 -8
  444. data/spec/dotdir/blast_2.7.1/blastn_nohits/BLASTN_NO_HITS_XML_2.7.1.xml +0 -866
  445. data/spec/dotdir/blast_2.7.1/blastn_nohits/job.yaml +0 -8
  446. data/spec/dotdir/blast_2.7.1/blastp/BLASTP_XML_2.7.1.xml +0 -1181
  447. data/spec/dotdir/blast_2.7.1/blastp/job.yaml +0 -8
  448. data/spec/dotdir/blast_2.7.1/blastx/BLASTX_XML_2.7.1.xml +0 -1181
  449. data/spec/dotdir/blast_2.7.1/blastx/job.yaml +0 -8
  450. data/spec/dotdir/blast_2.7.1/tblastn/TBLASTN_XML_2.7.1.xml +0 -1181
  451. data/spec/dotdir/blast_2.7.1/tblastn/job.yaml +0 -8
  452. data/spec/dotdir/blast_2.7.1/tblastx/TBLASTX_XML_2.7.1.xml +0 -8857
  453. data/spec/dotdir/blast_2.7.1/tblastx/job.yaml +0 -8
  454. data/spec/dotdir/blast_2.8.1/blastn/BLASTN_XML_2.8.1.xml +0 -1201
  455. data/spec/dotdir/blast_2.8.1/blastn/job.yaml +0 -8
  456. data/spec/dotdir/blast_2.8.1/blastn_nohits/BLASTN_NO_HITS_XML_2.8.1.xml +0 -866
  457. data/spec/dotdir/blast_2.8.1/blastn_nohits/job.yaml +0 -8
  458. data/spec/dotdir/blast_2.8.1/blastp/BLASTP_XML_2.8.1.xml +0 -1181
  459. data/spec/dotdir/blast_2.8.1/blastp/job.yaml +0 -8
  460. data/spec/dotdir/blast_2.8.1/blastx/BLASTX_XML_2.8.1.xml +0 -1181
  461. data/spec/dotdir/blast_2.8.1/blastx/job.yaml +0 -8
  462. data/spec/dotdir/blast_2.8.1/tblastn/TBLASTN_XML_2.8.1.xml +0 -1181
  463. data/spec/dotdir/blast_2.8.1/tblastn/job.yaml +0 -8
  464. data/spec/dotdir/blast_2.8.1/tblastx/TBLASTX_XML_2.8.1.xml +0 -8857
  465. data/spec/dotdir/blast_2.8.1/tblastx/job.yaml +0 -8
  466. data/spec/dotdir/blast_2.9.0/blastn/BLASTN_XML_2.9.0.xml +0 -1201
  467. data/spec/dotdir/blast_2.9.0/blastn/job.yaml +0 -8
  468. data/spec/dotdir/blast_2.9.0/blastn_nohits/BLASTN_NO_HITS_XML_2.9.0.xml +0 -866
  469. data/spec/dotdir/blast_2.9.0/blastn_nohits/job.yaml +0 -8
  470. data/spec/dotdir/blast_2.9.0/blastp/BLASTP_XML_2.9.0.xml +0 -1181
  471. data/spec/dotdir/blast_2.9.0/blastp/job.yaml +0 -8
  472. data/spec/dotdir/blast_2.9.0/blastx/BLASTX_XML_2.9.0.xml +0 -1181
  473. data/spec/dotdir/blast_2.9.0/blastx/job.yaml +0 -8
  474. data/spec/dotdir/blast_2.9.0/tblastn/TBLASTN_XML_2.9.0.xml +0 -1181
  475. data/spec/dotdir/blast_2.9.0/tblastn/job.yaml +0 -8
  476. data/spec/dotdir/blast_2.9.0/tblastx/TBLASTX_XML_2.9.0.xml +0 -8857
  477. data/spec/dotdir/blast_2.9.0/tblastx/job.yaml +0 -8
  478. data/spec/dotdir/diamond_0.9.24/blastp/DIAMOND_BLASTP_0.9.24.xml +0 -1040
  479. data/spec/dotdir/diamond_0.9.24/blastp/job.yaml +0 -8
  480. data/spec/dotdir/diamond_0.9.24/blastx/DIAMOND_BLASTX_0.9.24.xml +0 -1040
  481. data/spec/dotdir/diamond_0.9.24/blastx/job.yaml +0 -8
  482. data/spec/dotdir/diamond_0.9.24/blastx_nohits/DIAMOND_BLASTX_NOHITS_0.9.24.xml +0 -41
  483. data/spec/dotdir/diamond_0.9.24/blastx_nohits/job.yaml +0 -8
  484. data/spec/download_helper.rb +0 -35
  485. data/spec/empty_config.yml +0 -0
  486. data/spec/makeblastdb_spec.rb +0 -121
  487. data/spec/routes_spec.rb +0 -93
  488. data/spec/sample.conf +0 -2
  489. data/spec/sequence_spec.rb +0 -99
  490. data/spec/sequences/MH011443_1_gi_1486783306_gb_MH011443_1.txt +0 -6
  491. data/spec/sequences/MH011443_1_gi_1486783307_gb_AYF55702_1.txt +0 -6
  492. data/spec/sequences/MH011443_1_gi_1528997474_gb_MH447967_1.txt +0 -30
  493. data/spec/sequences/MH011443_1_sp_P04637_P53_HUMAN.txt +0 -6
  494. data/spec/sequences/Nucleotide_TP53_COX41.fasta +0 -15
  495. data/spec/sequences/Protein_TP53_COX41.fasta +0 -12
  496. data/spec/sequences/Query_1_SI2_2_0_06267.txt +0 -6
  497. data/spec/sequences/alignment-2_hits.txt +0 -12
  498. data/spec/sequences/alignment-35_hits_diamond_blastp.txt +0 -210
  499. data/spec/sequences/alignment-35_hits_diamond_blastx.txt +0 -210
  500. data/spec/sequences/alignment-3_hits.txt +0 -18
  501. data/spec/sequences/alignment-40_hits_blastn.txt +0 -246
  502. data/spec/sequences/alignment-40_hits_blastp.txt +0 -240
  503. data/spec/sequences/alignment-40_hits_blastp_2.2.30.txt +0 -240
  504. data/spec/sequences/alignment-40_hits_blastx.txt +0 -240
  505. data/spec/sequences/alignment-40_hits_tblastn.txt +0 -240
  506. data/spec/sequences/alignment-40_hits_tblastn_2.2.30.txt +0 -240
  507. data/spec/sequences/alignment-40_hits_tblastx.txt +0 -2664
  508. data/spec/sequences/alignment-4_hits.txt +0 -24
  509. data/spec/sequences/alignment-4_hits_blastn.txt +0 -24
  510. data/spec/sequences/alignment-4_hits_blastp.txt +0 -24
  511. data/spec/sequences/alignment-4_hits_blastp_2.2.30.txt +0 -24
  512. data/spec/sequences/alignment-4_hits_blastx.txt +0 -24
  513. data/spec/sequences/alignment-4_hits_diamond_blastp.txt +0 -24
  514. data/spec/sequences/alignment-4_hits_diamond_blastx.txt +0 -24
  515. data/spec/sequences/alignment-4_hits_tblastn.txt +0 -24
  516. data/spec/sequences/alignment-4_hits_tblastn_2.2.30.txt +0 -24
  517. data/spec/sequences/alignment-4_hits_tblastx.txt +0 -318
  518. data/spec/sequences/nucleotide_query.fa +0 -21
  519. data/spec/sequences/problematic_query.fa +0 -5
  520. data/spec/sequences/protein_query.fa +0 -9
  521. data/spec/sequences/sample_query_fire_ant_obps.fa +0 -44
  522. data/spec/sequences/sequenceserver-2_hits.fa +0 -10
  523. data/spec/sequences/sequenceserver-SI2.2.0_06267.fa +0 -5
  524. data/spec/sequences/sp_P04637_P53_HUMAN_gi_1099170394_ref_XP_018868681_1.txt +0 -6
  525. data/spec/sequences/sp_P04637_P53_HUMAN_gi_120407068_ref_NP_000537_3.txt +0 -6
  526. data/spec/sequences/sp_P04637_P53_HUMAN_gi_1484127324_gb_MG595988_1.txt +0 -6
  527. data/spec/sequences/sp_P04637_P53_HUMAN_gi_395440626_gb_JQ694049_1.txt +0 -6
  528. data/spec/sequences/sp_P04637_P53_HUMAN_sp_P04637_P53_HUMAN.txt +0 -6
  529. data/spec/sequenceserver_spec.rb +0 -90
  530. data/spec/spec_helper.rb +0 -63
data/spec/database/v4/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.phd DELETED
@@ -1,1189 +0,0 @@
1
- 1001628635483
2
- 100166407117
3
- 10025271591178
4
- 1006494294560
5
- 1011447042393
6
- 1013872034529
7
- 1020442856680
8
- 1021128729534
9
- 1022224411984
10
- 1022876749710
11
- 10251848871115
12
- 1028580956165
13
- 1031146067400
14
- 1031492154867
15
- 1037941053498
16
- 1041428054140
17
- 1041497943715
18
- 1046296165323
19
- 1046895734170
20
- 1050771577289
21
- 1054471065153
22
- 1059081917340
23
- 1065235149358
24
- 10665269921149
25
- 1067203542439
26
- 107132899234
27
- 10726043231127
28
- 1079717933992
29
- 1079826268915
30
- 108764027686
31
- 1092994068572
32
- 10939871931164
33
- 1104802545351
34
- 110557006636
35
- 1108707675144
36
- 1117781778687
37
- 11189909611017
38
- 1127105298967
39
- 11278813131180
40
- 1128712097146
41
- 1131900474823
42
- 113541247766
43
- 11376594401001
44
- 113929016827
45
- 1158041613627
46
- 1158924488239
47
- 1160009266496
48
- 1161917273540
49
- 11623445348
50
- 1165085870349
51
- 1165566178291
52
- 1168214381491
53
- 1169102293468
54
- 1169242463554
55
- 117076384312
56
- 11716434791034
57
- 1175793341476
58
- 1183241216852
59
- 1183499227188
60
- 1184787481366
61
- 1194476319694
62
- 1196172045243
63
- 1208069965417
64
- 1211068835118
65
- 1213885382743
66
- 12164055011018
67
- 121879302449
68
- 1221044754672
69
- 1223844558942
70
- 1225782094308
71
- 122582876401
72
- 123227427782
73
- 1240079719976
74
- 1244038378122
75
- 1246956683714
76
- 1251300569653
77
- 1251612319359
78
- 1261957836877
79
- 1266215501803
80
- 127025750508
81
- 127369245972
82
- 1275366907142
83
- 1281600339412
84
- 1282527610583
85
- 1291684874132
86
- 1293095319244
87
- 12946003241119
88
- 1299904161106
89
- 1307971732577
90
- 13129816501141
91
- 131551127701
92
- 1316523596551
93
- 1317032046487
94
- 1319223090269
95
- 13203496781162
96
- 132072109471
97
- 1338920697293
98
- 1341739821478
99
- 1343681532514
100
- 1346612540848
101
- 1347208294652
102
- 1350695317361
103
- 1359821015682
104
- 136295792403
105
- 1368031267532
106
- 1368942333606
107
- 13690445241008
108
- 1377775096436
109
- 13814482461039
110
- 13906304111132
111
- 1391729883660
112
- 13926347401151
113
- 13934195208
114
- 139416407846
115
- 1395015832864
116
- 1400019362504
117
- 1417476046716
118
- 14230567931
119
- 1423314649602
120
- 1424169431104
121
- 1424879622686
122
- 1425150403457
123
- 1426875789953
124
- 14294936381010
125
- 14390283513
126
- 1440036700958
127
- 1451566292264
128
- 1453083940339
129
- 146009861346
130
- 1460899480890
131
- 1463156907937
132
- 146469813453
133
- 1474718120548
134
- 1491132661424
135
- 1493662314427
136
- 149511422782
137
- 14982068511019
138
- 1510216977861
139
- 1511241802779
140
- 1521277626809
141
- 1521743461161
142
- 1525942412879
143
- 1530474115718
144
- 1531394322662
145
- 1538335805539
146
- 1541519818484
147
- 15432510431053
148
- 154334615272
149
- 1552913761083
150
- 1557022433255
151
- 1557202809930
152
- 15581414921046
153
- 15592774671168
154
- 1562167048211
155
- 1570422006536
156
- 15787642271042
157
- 1584145495418
158
- 1584718843379
159
- 1584804251186
160
- 158514567339
161
- 1585679912426
162
- 1587044959357
163
- 1587379248585
164
- 15907738821064
165
- 1594655208845
166
- 1595547159810
167
- 160730919550
168
- 1609957500668
169
- 161194950274
170
- 16130249981142
171
- 1613522751195
172
- 16197943431108
173
- 16198908061033
174
- 1623686471732
175
- 162763993483
176
- 1629027322822
177
- 1637424521082
178
- 1639152866471
179
- 1639702779219
180
- 1644458221455
181
- 1645877494869
182
- 164942039261
183
- 1653495311997
184
- 1654038872623
185
- 16612655540
186
- 1662302700517
187
- 1664172546872
188
- 1666524932387
189
- 1668111377473
190
- 166995919047
191
- 167375092513
192
- 1680441356557
193
- 1686801820721
194
- 1687853819555
195
- 1689120725667
196
- 16895148981130
197
- 1689651577488
198
- 1690481226723
199
- 169239681110
200
- 1699656663448
201
- 1700494197228
202
- 1704967968157
203
- 1707060556509
204
- 1714752181994
205
- 1715685542968
206
- 17165519081091
207
- 172612310177
208
- 1726700292121
209
- 1727280775342
210
- 17292865131111
211
- 1729527254586
212
- 1732715293647
213
- 1732958476124
214
- 1734184358774
215
- 1749232483168
216
- 1749749470954
217
- 17530591441031
218
- 1753627334392
219
- 1764263654760
220
- 1766037324945
221
- 1768131180233
222
- 1768362133905
223
- 1768471354343
224
- 1768642339813
225
- 1777551597818
226
- 177973713529
227
- 1792593027756
228
- 179333985166
229
- 1795105528998
230
- 1805563001963
231
- 1807685871386
232
- 1810216966524
233
- 18164812891
234
- 1817217578990
235
- 1835496532265
236
- 1840986107739
237
- 1850391416692
238
- 1852661382371
239
- 1868012425969
240
- 186824756680
241
- 1869467642738
242
- 1879354725232
243
- 188005450642
244
- 188467825501
245
- 1886401506951
246
- 1891368768790
247
- 18922712791153
248
- 1892951985729
249
- 1897463181552
250
- 1898014324961
251
- 1903541368290
252
- 1909092532673
253
- 1909659121748
254
- 1910220133909
255
- 191118666227
256
- 1913057743884
257
- 1917251856395
258
- 1917633901899
259
- 1926856932780
260
- 1927760563362
261
- 1927890351567
262
- 19294633261165
263
- 1930257858267
264
- 1933507732175
265
- 194107291928
266
- 1942833455578
267
- 19449984454
268
- 195114301252
269
- 19538182901070
270
- 195488299192
271
- 19579004791146
272
- 1958998269100
273
- 1964837822133
274
- 1966683809499
275
- 19672628601078
276
- 1969978227276
277
- 1971860032569
278
- 1972946144724
279
- 19740250428
280
- 1974960655733
281
- 1975480960135
282
- 1982496755311
283
- 19918223971007
284
- 1995558890162
285
- 1995761456863
286
- 1995787780924
287
- 19990084651150
288
- 200274755711
289
- 2004183385574
290
- 2004898667892
291
- 2008729144481
292
- 2008759636771
293
- 2014030616825
294
- 2014066989404
295
- 2016394223193
296
- 2016797531126
297
- 2019471964553
298
- 2020951617226
299
- 20227327751030
300
- 20233207041043
301
- 20238602851145
302
- 20248731633
303
- 2030533318414
304
- 20350602381135
305
- 2039573218613
306
- 20407802341144
307
- 2041439403815
308
- 2044362400200
309
- 20519860611038
310
- 205293137153
311
- 2059701208610
312
- 2060582094866
313
- 2062395407908
314
- 2070180938858
315
- 207032255202
316
- 2072567117181
317
- 2080817587770
318
- 2097702168390
319
- 2097709474980
320
- 2098176356223
321
- 2099634164507
322
- 2101499168163
323
- 2101772102768
324
- 21034565941117
325
- 210589173949
326
- 21100280114
327
- 2111181549270
328
- 2116697171108
329
- 211726709799
330
- 2128737471382
331
- 2135003737807
332
- 2137469937705
333
- 2141525196865
334
- 2144987510565
335
- 2148615821849
336
- 2148986393138
337
- 2150469128918
338
- 2152009937225
339
- 2152548354611
340
- 217149968221
341
- 217426269744
342
- 217639406716
343
- 2176729717746
344
- 2177923947415
345
- 2180362057164
346
- 2193931735604
347
- 2195605212344
348
- 2199714438421
349
- 2200492211446
350
- 2204209985322
351
- 22105665311157
352
- 2211060905874
353
- 2213201852136
354
- 22171004191013
355
- 22329236390
356
- 2235144319661
357
- 2237031534145
358
- 224517324703
359
- 224657945105
360
- 2251362187463
361
- 2260524427690
362
- 2260570685927
363
- 2260861010522
364
- 22613121801036
365
- 2261832811333
366
- 2266812354460
367
- 2269712554441
368
- 2271860259242
369
- 22725111361004
370
- 227575090398
371
- 2275863229793
372
- 2278623978437
373
- 2284438660580
374
- 22846489101184
375
- 2285664128669
376
- 2288292605841
377
- 2289582368792
378
- 2294737269205
379
- 2296704945126
380
- 2300575728352
381
- 2300832359616
382
- 2303232177556
383
- 2308629936787
384
- 23118971181058
385
- 23143368921051
386
- 23195817781099
387
- 2320544211814
388
- 2321881200772
389
- 2323157396169
390
- 232428707902
391
- 2327774263110
392
- 23321784631177
393
- 2339642022868
394
- 2340062289632
395
- 234089598806
396
- 2342590581938
397
- 23646628161100
398
- 2365790128423
399
- 236688195068
400
- 236758577123
401
- 2369598723573
402
- 2370633605897
403
- 2371355673996
404
- 2373535583411
405
- 2373603212288
406
- 238247031181
407
- 2382651186952
408
- 23835138011125
409
- 238378844778
410
- 23852565911173
411
- 2395807144986
412
- 23963925901076
413
- 240168375227
414
- 2402235666271
415
- 2403456383731
416
- 2409268376821
417
- 241385453597
418
- 241437409423
419
- 2414526072707
420
- 2414709922535
421
- 241688647575
422
- 24206392831066
423
- 24317408898
424
- 243211182463
425
- 243342887993
426
- 2440509131788
427
- 2442977856365
428
- 2444364246413
429
- 2445808148888
430
- 2446243907717
431
- 2448323254689
432
- 2450045610301
433
- 245396752142
434
- 2459028356910
435
- 2460457296769
436
- 2462883350425
437
- 2464975132281
438
- 2465066421561
439
- 24663400931081
440
- 2467541134299
441
- 2470966078161
442
- 24732414091129
443
- 2473489315601
444
- 2477407152147
445
- 2478707950485
446
- 2480664321134
447
- 2482308230875
448
- 2482674599381
449
- 2486386497407
450
- 2486917896851
451
- 24902754391029
452
- 2492762252735
453
- 249839154462
454
- 250311418492
455
- 25078734541104
456
- 2508759318274
457
- 2517804385245
458
- 25200556881182
459
- 2520695123708
460
- 2527449152336
461
- 2529717405177
462
- 2531239679152
463
- 2532007156493
464
- 2540969085619
465
- 2543060145605
466
- 25468234061163
467
- 2550138114306
468
- 2553627737754
469
- 25540648941185
470
- 2554668484594
471
- 2558223659591
472
- 2559479599218
473
- 25609955901026
474
- 2563219253948
475
- 2568078875318
476
- 2568417512571
477
- 25714101451128
478
- 2573086893546
479
- 25735582551054
480
- 2574060664983
481
- 2576081679212
482
- 2583467314248
483
- 2590252594683
484
- 25905958762
485
- 2590937045171
486
- 2592293550736
487
- 25935843451028
488
- 2596418579621
489
- 2599645598189
490
- 26020079211120
491
- 2602088351332
492
- 2606807016931
493
- 2609155917650
494
- 2611192130719
495
- 2618001364197
496
- 2620028342549
497
- 262145426837
498
- 262406529624
499
- 2624179511657
500
- 2625960696964
501
- 26297187101122
502
- 2633651862615
503
- 2637158429285
504
- 2646466777398
505
- 264650472912
506
- 26467190261016
507
- 2647699199832
508
- 264780146928
509
- 2650769006776
510
- 2655633895933
511
- 2656256397515
512
- 2658177901778
513
- 2660968959999
514
- 2664739134458
515
- 2665796307677
516
- 266650207666
517
- 2667663932383
518
- 2672148800752
519
- 2672311589921
520
- 2677130037936
521
- 2681102478116
522
- 2689893054224
523
- 2691007391520
524
- 2694836914603
525
- 26956482231061
526
- 269587904881
527
- 2696194715479
528
- 269622228292
529
- 2697154169172
530
- 2697935091857
531
- 26995856025
532
- 27001198821073
533
- 2701155788516
534
- 27075175288
535
- 27132425401110
536
- 271383064212
537
- 2724325947840
538
- 2730515475993
539
- 2732373053798
540
- 273244014226
541
- 2734470826684
542
- 2736854940475
543
- 2747288867180
544
- 2747610164744
545
- 2748118177490
546
- 2754831481634
547
- 27550730076
548
- 276374619741
549
- 2774926390622
550
- 27757480221187
551
- 2778197468519
552
- 2781854907757
553
- 2789935688284
554
- 2789939684696
555
- 2794043474286
556
- 2795798409901
557
- 2799052669797
558
- 2803806706592
559
- 28045453644
560
- 2804712521941
561
- 2804981071075
562
- 28081548111069
563
- 2809532478665
564
- 281148751130
565
- 2814437143543
566
- 2814565597693
567
- 2817881207438
568
- 2819230531609
569
- 2824424278167
570
- 28272519621080
571
- 282989696433
572
- 28306594401106
573
- 28369325741116
574
- 28381219291020
575
- 28526376301085
576
- 2863395807862
577
- 286378669262
578
- 2865802001129
579
- 2866353790314
580
- 2871570839518
581
- 2873529128434
582
- 2880586406836
583
- 2885246238173
584
- 2885787363630
585
- 2896296180971
586
- 289679744781
587
- 2897060713109
588
- 290047508394
589
- 2902376570676
590
- 2907235597307
591
- 2920682364287
592
- 2926827328847
593
- 292812290747
594
- 292831777959
595
- 29312983141113
596
- 2932867782526
597
- 2941054588408
598
- 2943579550542
599
- 294597848785
600
- 2950603093120
601
- 2952256001608
602
- 2958382186685
603
- 295891825265
604
- 29601271171002
605
- 2960128001812
606
- 2961026120671
607
- 29634822141154
608
- 2964504149240
609
- 2965852007893
610
- 2973029797597
611
- 297414884943
612
- 2976281923399
613
- 2976769863730
614
- 2977027069871
615
- 2977796497761
616
- 2981251289987
617
- 2981913461201
618
- 29841821971155
619
- 2985757783396
620
- 2985885378369
621
- 2990311627331
622
- 2991691461009
623
- 299282998422
624
- 299454290618
625
- 2995173309598
626
- 299528025373
627
- 29965208881022
628
- 3001336998620
629
- 3001534908480
630
- 3005922477965
631
- 3016331412636
632
- 3017364484190
633
- 301837158277
634
- 30188756601176
635
- 3021367336309
636
- 3026403449745
637
- 3028346601828
638
- 3029061089765
639
- 3046577673528
640
- 30499864011167
641
- 305501171885
642
- 3055696131198
643
- 3057895662989
644
- 3064486055503
645
- 30668693538
646
- 30678827731027
647
- 3069515867494
648
- 3071553115859
649
- 3078999643674
650
- 3079122119296
651
- 3083541746846
652
- 30856163641160
653
- 3091334414882
654
- 3092588081268
655
- 3096857800831
656
- 309771295593
657
- 3100687122904
658
- 310366267740
659
- 3104230525495
660
- 310874328130
661
- 3110468498338
662
- 31137033141105
663
- 3114839556895
664
- 311934228922
665
- 31197021511014
666
- 3120004468568
667
- 3120512099639
668
- 3121950157384
669
- 31232520261166
670
- 312469086397
671
- 3128590023914
672
- 3131565953804
673
- 3133259363962
674
- 3139765711576
675
- 3143676812635
676
- 3145585846203
677
- 3145587747220
678
- 3146900464325
679
- 3147734014811
680
- 3156150944720
681
- 315978465049
682
- 3168244148538
683
- 3169242095275
684
- 3170736215934
685
- 317553168985
686
- 3176864396497
687
- 3179562471406
688
- 3181455876247
689
- 3187110836712
690
- 3187408160617
691
- 3188634887587
692
- 3191411113564
693
- 31920581951112
694
- 3192939110252
695
- 31982299111124
696
- 3200276170559
697
- 3204975778925
698
- 32088835591074
699
- 3211823078282
700
- 3213778889957
701
- 321735897945
702
- 3218226467510
703
- 3225395944444
704
- 3227077291638
705
- 3227875751919
706
- 32338806801005
707
- 3239896178675
708
- 32464111951015
709
- 324974089139
710
- 3256666909767
711
- 3260630850679
712
- 3262380408853
713
- 32727277741025
714
- 327444571995
715
- 3278824800663
716
- 3278859354416
717
- 3280126387907
718
- 3280819397297
719
- 3294112425174
720
- 3294737332726
721
- 3297961427981
722
- 32995201231084
723
- 3300878354137
724
- 3304478949327
725
- 330483931283
726
- 3306054145374
727
- 330692823378
728
- 3307856000348
729
- 3309410215112
730
- 3310060301856
731
- 33102574731118
732
- 331343215570
733
- 3314086009648
734
- 3317202935607
735
- 3321953889257
736
- 332404431015
737
- 3327386779802
738
- 3328222032763
739
- 33303008451175
740
- 3333834024445
741
- 333412648541
742
- 334346419431
743
- 3344559282829
744
- 3347921050258
745
- 33488651551032
746
- 3350339551217
747
- 3353511280590
748
- 3355923709183
749
- 3356543333985
750
- 3358101344777
751
- 3365196464759
752
- 3365805321273
753
- 3368937284402
754
- 3370816487742
755
- 3381147789249
756
- 33820018231183
757
- 3382212456134
758
- 3383606718334
759
- 3383671597149
760
- 3394989350294
761
- 3396978415272
762
- 3403734861950
763
- 3406102993880
764
- 3406588673651
765
- 3416357158753
766
- 3418608509335
767
- 3423230793238
768
- 3427507771319
769
- 3429367165429
770
- 3432143692300
771
- 3433344044900
772
- 3441377172702
773
- 34415592257
774
- 3444587402878
775
- 34617059521097
776
- 3462917566582
777
- 34633216101055
778
- 34640837451172
779
- 34658643755
780
- 3467403473612
781
- 346799287310
782
- 346985652125
783
- 3471668456467
784
- 3472144152589
785
- 3473362276881
786
- 3476993888537
787
- 34779050081006
788
- 3480249576974
789
- 3487999845860
790
- 3490027840966
791
- 3490200977373
792
- 3490664994513
793
- 3493556781037
794
- 34936000051086
795
- 34980492586
796
- 3499841327179
797
- 35028509801044
798
- 3505167000279
799
- 3507264134896
800
- 3512613274454
801
- 3513854697926
802
- 3519670054207
803
- 3520153275929
804
- 3528030950440
805
- 3531974778459
806
- 35358749261133
807
- 35370766221096
808
- 3537123084706
809
- 35389703681109
810
- 3544721774377
811
- 3545539042870
812
- 3548234065345
813
- 3552254792237
814
- 3553668324466
815
- 3558634733329
816
- 3565221589368
817
- 35674082571188
818
- 3569709830547
819
- 3578564572725
820
- 3589295284185
821
- 35987717971103
822
- 3601566871385
823
- 3602091744184
824
- 360314801819
825
- 36046068701092
826
- 3605148668103
827
- 360572124455
828
- 3606668164347
829
- 3608122467523
830
- 3609949834410
831
- 3617577941808
832
- 3618319062199
833
- 3621238661259
834
- 36237106237
835
- 362912890540
836
- 3630481850502
837
- 36429216461093
838
- 3644214060464
839
- 3645675945388
840
- 3654430943328
841
- 3656013722947
842
- 3656940910250
843
- 366125634419
844
- 3661469076527
845
- 3662420974304
846
- 3675838877783
847
- 3677379371360
848
- 3680250180562
849
- 3682222316695
850
- 3683820583944
851
- 3687782628709
852
- 3688158710625
853
- 3694748052432
854
- 3695943821102
855
- 3696077805420
856
- 3698266612794
857
- 3700977242521
858
- 3705082179461
859
- 3709072841111
860
- 37124888091021
861
- 37130112584
862
- 3714299326698
863
- 371926971011
864
- 3726487395751
865
- 3729649356655
866
- 3729725771062
867
- 3733364633246
868
- 3734216422691
869
- 3735130723178
870
- 37353380281139
871
- 374303306469
872
- 374897812940
873
- 37501986781089
874
- 37514294541052
875
- 37523642331059
876
- 37585931331121
877
- 37586729631131
878
- 3763494550817
879
- 3769140121525
880
- 3772647843820
881
- 3772935073920
882
- 37742002161000
883
- 37746979551136
884
- 3775327357451
885
- 37797421381049
886
- 3782788340943
887
- 3784462521656
888
- 3785642365113
889
- 3786554204596
890
- 3790528216236
891
- 3791042250795
892
- 3792383338337
893
- 37936069764
894
- 3796727690256
895
- 3798129519295
896
- 3800767441839
897
- 38027111231148
898
- 38068733322
899
- 3807384439664
900
- 3807656553946
901
- 3826586732472
902
- 3829854823956
903
- 38326820321140
904
- 38348830441
905
- 3835803298477
906
- 38447596801068
907
- 3850723879764
908
- 3851931799450
909
- 38537423161057
910
- 3857790324599
911
- 3862841211844
912
- 3869703786749
913
- 3871230042758
914
- 3875921186873
915
- 38775773801079
916
- 38787870861090
917
- 38795263541159
918
- 3880303817370
919
- 388052274356
920
- 38823687391179
921
- 38931645301048
922
- 3893304012216
923
- 389518468866
924
- 391018824
925
- 3920300668241
926
- 392278572970
927
- 3922797396380
928
- 39246147739
929
- 3924938637443
930
- 392970063731
931
- 39382072291171
932
- 394554402467
933
- 3952096529906
934
- 3959010465850
935
- 3964026779176
936
- 3966170641843
937
- 3969867504150
938
- 3982060559628
939
- 3987914180321
940
- 3989403662262
941
- 3995618125978
942
- 4021333989631
943
- 4021948638935
944
- 4026814916654
945
- 4030899366353
946
- 4036925669159
947
- 403697724160
948
- 4037277561826
949
- 4038122736773
950
- 40394468221040
951
- 4043442112131
952
- 4043553591035
953
- 4051966110214
954
- 40529876521114
955
- 4061126942891
956
- 40621376731156
957
- 408657091789
958
- 4088116870230
959
- 4095631713372
960
- 4096459317801
961
- 40966416551060
962
- 4101149187114
963
- 4117654708119
964
- 412486286253
965
- 41253394011087
966
- 412589968724
967
- 4129341075350
968
- 4129686350452
969
- 413304989094
970
- 4134396380127
971
- 413767600251
972
- 41419648741003
973
- 4147577286298
974
- 4157898818835
975
- 41621089431023
976
- 41624979031186
977
- 41654590841147
978
- 416845589302
979
- 4171758804221
980
- 4175418504805
981
- 4175422007315
982
- 417943554996
983
- 4192820205156
984
- 4199789500486
985
- 4210692257254
986
- 421623696892
987
- 42192626321174
988
- 4221553696235
989
- 4222234337141
990
- 4225956721206
991
- 423355831107
992
- 4234232912160
993
- 4238061784316
994
- 4239196165629
995
- 4240364737876
996
- 4242582553614
997
- 4243359860588
998
- 42465547219
999
- 42466509031072
1000
- 4255394091713
1001
- 4259475716786
1002
- 4261972586194
1003
- 4264951089979
1004
- 4268504154500
1005
- 427343857633
1006
- 42779455091138
1007
- 427837938299
1008
- 4285494108595
1009
- 4293911761280
1010
- 430067375213
1011
- 431213683750
1012
- 43453263889
1013
- 43841732434
1014
- 440385798229
1015
- 441505519854
1016
- 444750386512
1017
- 44544831600
1018
- 445956334883
1019
- 451406491095
1020
- 4539042131011
1021
- 454458022637
1022
- 4553312491050
1023
- 45627182341
1024
- 458104603923
1025
- 458761378784
1026
- 46636874389
1027
- 474294327391
1028
- 48174548858
1029
- 4852324741047
1030
- 48624658737
1031
- 494675646791
1032
- 496904798834
1033
- 49926481859
1034
- 506328151115
1035
- 509616408563
1036
- 512675247482
1037
- 513364591700
1038
- 515476748143
1039
- 520023023973
1040
- 520178778894
1041
- 528929080688
1042
- 529186056913
1043
- 541290231405
1044
- 542967916531
1045
- 543962080816
1046
- 5451861811098
1047
- 548131075977
1048
- 558921363317
1049
- 564735019367
1050
- 567751602356
1051
- 5822117641024
1052
- 588592299530
1053
- 589734332278
1054
- 590604243330
1055
- 592366240643
1056
- 594527840975
1057
- 597069694955
1058
- 5993613581101
1059
- 599774859117
1060
- 600221542506
1061
- 6006685421065
1062
- 6008015121094
1063
- 6011922471143
1064
- 603449295465
1065
- 605681902210
1066
- 607545702645
1067
- 6085373481071
1068
- 6103110916
1069
- 612603281088
1070
- 615333345320
1071
- 6162883301137
1072
- 6229292475
1073
- 625488781056
1074
- 626491719364
1075
- 628977799196
1076
- 632322312435
1077
- 639176572796
1078
- 641641489544
1079
- 645700750158
1080
- 6468154061123
1081
- 654283066728
1082
- 661148889855
1083
- 66199782335
1084
- 662486872148
1085
- 664889699107
1086
- 666123436641
1087
- 666827068263
1088
- 67059151757
1089
- 67465561470
1090
- 68383983479
1091
- 687221017678
1092
- 687331230326
1093
- 69248888969
1094
- 704462260833
1095
- 709858989649
1096
- 712994896101
1097
- 713280769128
1098
- 714083321842
1099
- 716967255261
1100
- 720658941474
1101
- 728675676697
1102
- 7292499751012
1103
- 7333250041041
1104
- 737810796887
1105
- 743377212324
1106
- 743893714545
1107
- 7447552741077
1108
- 748346502489
1109
- 75236511704
1110
- 754283835375
1111
- 755377362154
1112
- 75629071447
1113
- 762692129558
1114
- 7635396324
1115
- 767947969355
1116
- 7690838681158
1117
- 7714326611045
1118
- 772305919575
1119
- 77759162775
1120
- 782261394566
1121
- 788780615917
1122
- 7905571720
1123
- 7927702071170
1124
- 794239571428
1125
- 794447649982
1126
- 795306776960
1127
- 79612582418
1128
- 7976022081067
1129
- 798933626800
1130
- 802635134456
1131
- 80354099184
1132
- 805733240430
1133
- 8158682481152
1134
- 824552363659
1135
- 828959098191
1136
- 834252673222
1137
- 840559643511
1138
- 840594388155
1139
- 843091835209
1140
- 844185633932
1141
- 8464076670
1142
- 851168085789
1143
- 858680729442
1144
- 86509689350
1145
- 8671488851169
1146
- 867511282409
1147
- 869122017533
1148
- 869667990658
1149
- 871760524470
1150
- 872517668579
1151
- 873191699988
1152
- 878178014838
1153
- 880770395303
1154
- 886011503722
1155
- 88982747287
1156
- 891793197354
1157
- 898603197626
1158
- 898711492422
1159
- 900080473886
1160
- 905399299830
1161
- 911998530727
1162
- 919058989734
1163
- 920164670640
1164
- 923916181581
1165
- 925832655363
1166
- 92655112651
1167
- 929149167995
1168
- 929366204646
1169
- 93754465132
1170
- 938447443266
1171
- 950820408215
1172
- 95414964903
1173
- 958227326505
1174
- 963287642991
1175
- 964779166102
1176
- 966066835939
1177
- 968886945699
1178
- 969869988182
1179
- 974081087911
1180
- 974749732187
1181
- 976708206681
1182
- 977103304313
1183
- 979161388204
1184
- 979390376305
1185
- 980805904231
1186
- 983871313376
1187
- 98856979260
1188
- 995662828151
1189
- 9985332101063