rb-gsl 1.16.0.5 → 1.16.0.6
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- checksums.yaml +4 -4
- data/rb-gsl.gemspec +5 -10
- metadata +10 -713
- data/.gitignore +0 -12
- data/.travis.yml +0 -24
- data/AUTHORS +0 -12
- data/COPYING +0 -341
- data/ChangeLog +0 -621
- data/Gemfile +0 -4
- data/README.md +0 -77
- data/Rakefile +0 -20
- data/THANKS +0 -17
- data/examples/alf/alf.gp +0 -15
- data/examples/alf/alf.rb +0 -32
- data/examples/blas/blas.rb +0 -13
- data/examples/blas/dnrm2.rb +0 -16
- data/examples/blas/level1.rb +0 -81
- data/examples/blas/level2.rb +0 -11
- data/examples/blas/level3.rb +0 -12
- data/examples/bspline.rb +0 -57
- data/examples/cdf.rb +0 -16
- data/examples/cheb.rb +0 -21
- data/examples/combination.rb +0 -23
- data/examples/complex/RC-lpf.rb +0 -47
- data/examples/complex/add.rb +0 -36
- data/examples/complex/coerce.rb +0 -14
- data/examples/complex/complex.rb +0 -25
- data/examples/complex/fpmi.rb +0 -70
- data/examples/complex/functions.rb +0 -77
- data/examples/complex/michelson.rb +0 -36
- data/examples/complex/mul.rb +0 -28
- data/examples/complex/oscillator.rb +0 -17
- data/examples/complex/set.rb +0 -37
- data/examples/const/physconst.rb +0 -151
- data/examples/const/travel.rb +0 -45
- data/examples/deriv/demo.rb +0 -13
- data/examples/deriv/deriv.rb +0 -36
- data/examples/deriv/diff.rb +0 -35
- data/examples/dht.rb +0 -42
- data/examples/dirac.rb +0 -56
- data/examples/eigen/eigen.rb +0 -34
- data/examples/eigen/herm.rb +0 -22
- data/examples/eigen/narray.rb +0 -9
- data/examples/eigen/nonsymm.rb +0 -37
- data/examples/eigen/nonsymmv.rb +0 -43
- data/examples/eigen/qhoscillator.gp +0 -35
- data/examples/eigen/qhoscillator.rb +0 -90
- data/examples/eigen/vander.rb +0 -41
- data/examples/fft/fft.rb +0 -17
- data/examples/fft/fft2.rb +0 -17
- data/examples/fft/forward.rb +0 -25
- data/examples/fft/forward2.rb +0 -26
- data/examples/fft/radix2.rb +0 -18
- data/examples/fft/real-halfcomplex.rb +0 -33
- data/examples/fft/real-halfcomplex2.rb +0 -30
- data/examples/fft/realradix2.rb +0 -19
- data/examples/fft/sunspot.dat +0 -256
- data/examples/fft/sunspot.rb +0 -16
- data/examples/fit/expdata.dat +0 -20
- data/examples/fit/expfit.rb +0 -31
- data/examples/fit/gaussfit.rb +0 -29
- data/examples/fit/gaussian_2peaks.rb +0 -34
- data/examples/fit/hillfit.rb +0 -40
- data/examples/fit/lognormal.rb +0 -26
- data/examples/fit/lorentzfit.rb +0 -22
- data/examples/fit/multifit.rb +0 -72
- data/examples/fit/ndlinear.rb +0 -133
- data/examples/fit/nonlinearfit.rb +0 -89
- data/examples/fit/plot.gp +0 -36
- data/examples/fit/polyfit.rb +0 -9
- data/examples/fit/powerfit.rb +0 -21
- data/examples/fit/sigmoidfit.rb +0 -40
- data/examples/fit/sinfit.rb +0 -22
- data/examples/fit/wlinear.rb +0 -46
- data/examples/fresnel.rb +0 -11
- data/examples/function/function.rb +0 -36
- data/examples/function/log.rb +0 -7
- data/examples/function/min.rb +0 -33
- data/examples/function/sin.rb +0 -10
- data/examples/function/synchrotron.rb +0 -18
- data/examples/gallery/butterfly.rb +0 -7
- data/examples/gallery/cayley.rb +0 -12
- data/examples/gallery/cornu.rb +0 -23
- data/examples/gallery/eight.rb +0 -11
- data/examples/gallery/koch.rb +0 -40
- data/examples/gallery/lemniscate.rb +0 -11
- data/examples/gallery/polar.rb +0 -11
- data/examples/gallery/rgplot/cossin.rb +0 -35
- data/examples/gallery/rgplot/rgplot.replaced +0 -0
- data/examples/gallery/rgplot/roesller.rb +0 -55
- data/examples/gallery/roesller.rb +0 -39
- data/examples/gallery/scarabaeus.rb +0 -14
- data/examples/histogram/cauchy.rb +0 -27
- data/examples/histogram/cauchy.sh +0 -2
- data/examples/histogram/exponential.rb +0 -19
- data/examples/histogram/gauss.rb +0 -16
- data/examples/histogram/gsl-histogram.rb +0 -40
- data/examples/histogram/histo2d.rb +0 -31
- data/examples/histogram/histo3d.rb +0 -34
- data/examples/histogram/histogram-pdf.rb +0 -27
- data/examples/histogram/histogram.rb +0 -26
- data/examples/histogram/integral.rb +0 -28
- data/examples/histogram/poisson.rb +0 -27
- data/examples/histogram/power.rb +0 -25
- data/examples/histogram/rebin.rb +0 -17
- data/examples/histogram/smp.dat +0 -5
- data/examples/histogram/xexp.rb +0 -21
- data/examples/integration/ahmed.rb +0 -21
- data/examples/integration/cosmology.rb +0 -75
- data/examples/integration/friedmann.gp +0 -16
- data/examples/integration/friedmann.rb +0 -35
- data/examples/integration/gamma-zeta.rb +0 -35
- data/examples/integration/integration.rb +0 -22
- data/examples/integration/qag.rb +0 -8
- data/examples/integration/qag2.rb +0 -14
- data/examples/integration/qag3.rb +0 -8
- data/examples/integration/qagi.rb +0 -28
- data/examples/integration/qagi2.rb +0 -49
- data/examples/integration/qagiu.rb +0 -29
- data/examples/integration/qagp.rb +0 -20
- data/examples/integration/qags.rb +0 -14
- data/examples/integration/qawc.rb +0 -18
- data/examples/integration/qawf.rb +0 -41
- data/examples/integration/qawo.rb +0 -29
- data/examples/integration/qaws.rb +0 -30
- data/examples/integration/qng.rb +0 -17
- data/examples/interp/demo.gp +0 -20
- data/examples/interp/demo.rb +0 -45
- data/examples/interp/interp.rb +0 -37
- data/examples/interp/points +0 -10
- data/examples/interp/spline.rb +0 -20
- data/examples/jacobi/deriv.rb +0 -40
- data/examples/jacobi/integrate.rb +0 -34
- data/examples/jacobi/interp.rb +0 -43
- data/examples/jacobi/jacobi.rb +0 -11
- data/examples/linalg/HH.rb +0 -15
- data/examples/linalg/HH_narray.rb +0 -13
- data/examples/linalg/LQ_solve.rb +0 -73
- data/examples/linalg/LU.rb +0 -84
- data/examples/linalg/LU2.rb +0 -31
- data/examples/linalg/LU_narray.rb +0 -24
- data/examples/linalg/PTLQ.rb +0 -47
- data/examples/linalg/QR.rb +0 -18
- data/examples/linalg/QRPT.rb +0 -47
- data/examples/linalg/QR_solve.rb +0 -78
- data/examples/linalg/QR_solve_narray.rb +0 -13
- data/examples/linalg/SV.rb +0 -16
- data/examples/linalg/SV_narray.rb +0 -12
- data/examples/linalg/SV_solve.rb +0 -49
- data/examples/linalg/chol.rb +0 -29
- data/examples/linalg/chol_narray.rb +0 -15
- data/examples/linalg/complex.rb +0 -57
- data/examples/linalg/invert_narray.rb +0 -10
- data/examples/math/const.rb +0 -67
- data/examples/math/elementary.rb +0 -35
- data/examples/math/functions.rb +0 -41
- data/examples/math/inf_nan.rb +0 -34
- data/examples/math/minmax.rb +0 -22
- data/examples/math/power.rb +0 -18
- data/examples/math/test.rb +0 -31
- data/examples/matrix/a.dat +0 -0
- data/examples/matrix/add.rb +0 -45
- data/examples/matrix/b.dat +0 -4
- data/examples/matrix/cat.rb +0 -31
- data/examples/matrix/colvectors.rb +0 -24
- data/examples/matrix/complex.rb +0 -41
- data/examples/matrix/det.rb +0 -29
- data/examples/matrix/diagonal.rb +0 -23
- data/examples/matrix/get_all.rb +0 -159
- data/examples/matrix/hilbert.rb +0 -31
- data/examples/matrix/iterator.rb +0 -19
- data/examples/matrix/matrix.rb +0 -57
- data/examples/matrix/minmax.rb +0 -53
- data/examples/matrix/mul.rb +0 -39
- data/examples/matrix/rand.rb +0 -20
- data/examples/matrix/read.rb +0 -29
- data/examples/matrix/rowcol.rb +0 -47
- data/examples/matrix/set.rb +0 -41
- data/examples/matrix/set_all.rb +0 -100
- data/examples/matrix/view.rb +0 -32
- data/examples/matrix/view_all.rb +0 -148
- data/examples/matrix/write.rb +0 -23
- data/examples/min.rb +0 -29
- data/examples/monte/miser.rb +0 -47
- data/examples/monte/monte.rb +0 -47
- data/examples/monte/plain.rb +0 -47
- data/examples/monte/vegas.rb +0 -46
- data/examples/multimin/bundle.rb +0 -66
- data/examples/multimin/cqp.rb +0 -109
- data/examples/multimin/fdfminimizer.rb +0 -40
- data/examples/multimin/fminimizer.rb +0 -41
- data/examples/multiroot/demo.rb +0 -36
- data/examples/multiroot/fdfsolver.rb +0 -50
- data/examples/multiroot/fsolver.rb +0 -33
- data/examples/multiroot/fsolver2.rb +0 -32
- data/examples/multiroot/fsolver3.rb +0 -26
- data/examples/narray/histogram.rb +0 -14
- data/examples/narray/mandel.rb +0 -27
- data/examples/narray/narray.rb +0 -28
- data/examples/narray/narray2.rb +0 -44
- data/examples/narray/sf.rb +0 -26
- data/examples/ntuple/create.rb +0 -17
- data/examples/ntuple/project.rb +0 -31
- data/examples/odeiv/binarysystem.gp +0 -23
- data/examples/odeiv/binarysystem.rb +0 -104
- data/examples/odeiv/demo.gp +0 -24
- data/examples/odeiv/demo.rb +0 -69
- data/examples/odeiv/demo2.gp +0 -26
- data/examples/odeiv/duffing.rb +0 -45
- data/examples/odeiv/frei1.rb +0 -109
- data/examples/odeiv/frei2.rb +0 -76
- data/examples/odeiv/legendre.rb +0 -52
- data/examples/odeiv/odeiv.rb +0 -32
- data/examples/odeiv/odeiv2.rb +0 -45
- data/examples/odeiv/oscillator.rb +0 -42
- data/examples/odeiv/sedov.rb +0 -97
- data/examples/odeiv/whitedwarf.gp +0 -40
- data/examples/odeiv/whitedwarf.rb +0 -158
- data/examples/ool/conmin.rb +0 -100
- data/examples/ool/gencan.rb +0 -99
- data/examples/ool/pgrad.rb +0 -100
- data/examples/ool/spg.rb +0 -100
- data/examples/pdf/bernoulli.rb +0 -5
- data/examples/pdf/beta.rb +0 -7
- data/examples/pdf/binomiral.rb +0 -10
- data/examples/pdf/cauchy.rb +0 -6
- data/examples/pdf/chisq.rb +0 -8
- data/examples/pdf/exponential.rb +0 -7
- data/examples/pdf/exppow.rb +0 -6
- data/examples/pdf/fdist.rb +0 -7
- data/examples/pdf/flat.rb +0 -7
- data/examples/pdf/gamma.rb +0 -8
- data/examples/pdf/gauss-tail.rb +0 -5
- data/examples/pdf/gauss.rb +0 -6
- data/examples/pdf/geometric.rb +0 -5
- data/examples/pdf/gumbel.rb +0 -6
- data/examples/pdf/hypergeometric.rb +0 -11
- data/examples/pdf/landau.rb +0 -5
- data/examples/pdf/laplace.rb +0 -7
- data/examples/pdf/logarithmic.rb +0 -5
- data/examples/pdf/logistic.rb +0 -6
- data/examples/pdf/lognormal.rb +0 -6
- data/examples/pdf/neg-binomiral.rb +0 -10
- data/examples/pdf/pareto.rb +0 -7
- data/examples/pdf/pascal.rb +0 -10
- data/examples/pdf/poisson.rb +0 -5
- data/examples/pdf/rayleigh-tail.rb +0 -6
- data/examples/pdf/rayleigh.rb +0 -6
- data/examples/pdf/tdist.rb +0 -6
- data/examples/pdf/weibull.rb +0 -8
- data/examples/permutation/ex1.rb +0 -22
- data/examples/permutation/permutation.rb +0 -16
- data/examples/poly/bell.rb +0 -6
- data/examples/poly/bessel.rb +0 -6
- data/examples/poly/cheb.rb +0 -6
- data/examples/poly/cheb_II.rb +0 -6
- data/examples/poly/cubic.rb +0 -9
- data/examples/poly/demo.rb +0 -20
- data/examples/poly/eval.rb +0 -28
- data/examples/poly/eval_derivs.rb +0 -14
- data/examples/poly/fit.rb +0 -21
- data/examples/poly/hermite.rb +0 -6
- data/examples/poly/poly.rb +0 -13
- data/examples/poly/quadratic.rb +0 -25
- data/examples/random/diffusion.rb +0 -34
- data/examples/random/gaussian.rb +0 -9
- data/examples/random/generator.rb +0 -27
- data/examples/random/hdsobol.rb +0 -21
- data/examples/random/poisson.rb +0 -9
- data/examples/random/qrng.rb +0 -19
- data/examples/random/randomwalk.rb +0 -37
- data/examples/random/randomwalk2d.rb +0 -19
- data/examples/random/rayleigh.rb +0 -36
- data/examples/random/rng.rb +0 -33
- data/examples/random/rngextra.rb +0 -14
- data/examples/roots/bisection.rb +0 -25
- data/examples/roots/brent.rb +0 -43
- data/examples/roots/demo.rb +0 -30
- data/examples/roots/newton.rb +0 -46
- data/examples/roots/recombination.gp +0 -11
- data/examples/roots/recombination.rb +0 -61
- data/examples/roots/steffenson.rb +0 -48
- data/examples/sf/ShiChi.rb +0 -6
- data/examples/sf/SiCi.rb +0 -6
- data/examples/sf/airy_Ai.rb +0 -8
- data/examples/sf/airy_Bi.rb +0 -8
- data/examples/sf/bessel_IK.rb +0 -12
- data/examples/sf/bessel_JY.rb +0 -13
- data/examples/sf/beta_inc.rb +0 -9
- data/examples/sf/clausen.rb +0 -6
- data/examples/sf/dawson.rb +0 -5
- data/examples/sf/debye.rb +0 -9
- data/examples/sf/dilog.rb +0 -6
- data/examples/sf/ellint.rb +0 -6
- data/examples/sf/expint.rb +0 -8
- data/examples/sf/fermi.rb +0 -10
- data/examples/sf/gamma_inc_P.rb +0 -9
- data/examples/sf/gegenbauer.rb +0 -8
- data/examples/sf/hyperg.rb +0 -7
- data/examples/sf/laguerre.rb +0 -19
- data/examples/sf/lambertW.rb +0 -5
- data/examples/sf/legendre_P.rb +0 -10
- data/examples/sf/lngamma.rb +0 -5
- data/examples/sf/psi.rb +0 -54
- data/examples/sf/sphbessel.gp +0 -27
- data/examples/sf/sphbessel.rb +0 -30
- data/examples/sf/synchrotron.rb +0 -5
- data/examples/sf/transport.rb +0 -10
- data/examples/sf/zetam1.rb +0 -5
- data/examples/siman.rb +0 -44
- data/examples/sort/heapsort.rb +0 -23
- data/examples/sort/heapsort_vector_complex.rb +0 -21
- data/examples/sort/sort.rb +0 -23
- data/examples/sort/sort2.rb +0 -16
- data/examples/stats/mean.rb +0 -17
- data/examples/stats/statistics.rb +0 -18
- data/examples/stats/test.rb +0 -9
- data/examples/sum.rb +0 -34
- data/examples/tamu_anova.rb +0 -18
- data/examples/vector/a.dat +0 -0
- data/examples/vector/add.rb +0 -56
- data/examples/vector/b.dat +0 -4
- data/examples/vector/c.dat +0 -3
- data/examples/vector/collect.rb +0 -26
- data/examples/vector/compare.rb +0 -28
- data/examples/vector/complex.rb +0 -51
- data/examples/vector/complex_get_all.rb +0 -85
- data/examples/vector/complex_set_all.rb +0 -131
- data/examples/vector/complex_view_all.rb +0 -77
- data/examples/vector/connect.rb +0 -22
- data/examples/vector/decimate.rb +0 -38
- data/examples/vector/diff.rb +0 -31
- data/examples/vector/filescan.rb +0 -17
- data/examples/vector/floor.rb +0 -23
- data/examples/vector/get_all.rb +0 -82
- data/examples/vector/gnuplot.rb +0 -38
- data/examples/vector/graph.rb +0 -28
- data/examples/vector/histogram.rb +0 -22
- data/examples/vector/linspace.rb +0 -24
- data/examples/vector/log.rb +0 -17
- data/examples/vector/logic.rb +0 -33
- data/examples/vector/logspace.rb +0 -25
- data/examples/vector/minmax.rb +0 -47
- data/examples/vector/mul.rb +0 -49
- data/examples/vector/narray.rb +0 -46
- data/examples/vector/read.rb +0 -29
- data/examples/vector/set.rb +0 -35
- data/examples/vector/set_all.rb +0 -121
- data/examples/vector/smpv.dat +0 -15
- data/examples/vector/test.rb +0 -43
- data/examples/vector/test_gslblock.rb +0 -58
- data/examples/vector/vector.rb +0 -110
- data/examples/vector/view.rb +0 -35
- data/examples/vector/view_all.rb +0 -73
- data/examples/vector/where.rb +0 -29
- data/examples/vector/write.rb +0 -24
- data/examples/vector/zip.rb +0 -34
- data/examples/wavelet/ecg.dat +0 -256
- data/examples/wavelet/wavelet1.rb +0 -50
- data/ext/gsl_native/alf.c +0 -206
- data/ext/gsl_native/array.c +0 -553
- data/ext/gsl_native/array_complex.c +0 -245
- data/ext/gsl_native/blas.c +0 -28
- data/ext/gsl_native/blas1.c +0 -733
- data/ext/gsl_native/blas2.c +0 -1088
- data/ext/gsl_native/blas3.c +0 -880
- data/ext/gsl_native/block.c +0 -40
- data/ext/gsl_native/block_source.h +0 -885
- data/ext/gsl_native/bspline.c +0 -122
- data/ext/gsl_native/bundle.c +0 -3
- data/ext/gsl_native/cdf.c +0 -740
- data/ext/gsl_native/cheb.c +0 -531
- data/ext/gsl_native/combination.c +0 -275
- data/ext/gsl_native/common.c +0 -293
- data/ext/gsl_native/complex.c +0 -1002
- data/ext/gsl_native/const.c +0 -331
- data/ext/gsl_native/const_additional.c +0 -99
- data/ext/gsl_native/cqp.c +0 -283
- data/ext/gsl_native/deriv.c +0 -187
- data/ext/gsl_native/dht.c +0 -353
- data/ext/gsl_native/diff.c +0 -164
- data/ext/gsl_native/dirac.c +0 -388
- data/ext/gsl_native/eigen.c +0 -2322
- data/ext/gsl_native/error.c +0 -193
- data/ext/gsl_native/extconf.rb +0 -118
- data/ext/gsl_native/fft.c +0 -1095
- data/ext/gsl_native/fit.c +0 -204
- data/ext/gsl_native/fresnel.c +0 -312
- data/ext/gsl_native/function.c +0 -518
- data/ext/gsl_native/geometry.c +0 -139
- data/ext/gsl_native/graph.c +0 -1590
- data/ext/gsl_native/gsl.c +0 -259
- data/ext/gsl_native/gsl_narray.c +0 -794
- data/ext/gsl_native/histogram.c +0 -1964
- data/ext/gsl_native/histogram2d.c +0 -1042
- data/ext/gsl_native/histogram3d.c +0 -884
- data/ext/gsl_native/histogram3d_source.c +0 -749
- data/ext/gsl_native/histogram_find.c +0 -99
- data/ext/gsl_native/histogram_oper.c +0 -150
- data/ext/gsl_native/ieee.c +0 -88
- data/ext/gsl_native/include/rb_gsl.h +0 -136
- data/ext/gsl_native/include/rb_gsl_array.h +0 -214
- data/ext/gsl_native/include/rb_gsl_cheb.h +0 -19
- data/ext/gsl_native/include/rb_gsl_common.h +0 -348
- data/ext/gsl_native/include/rb_gsl_complex.h +0 -25
- data/ext/gsl_native/include/rb_gsl_const.h +0 -23
- data/ext/gsl_native/include/rb_gsl_dirac.h +0 -6
- data/ext/gsl_native/include/rb_gsl_eigen.h +0 -17
- data/ext/gsl_native/include/rb_gsl_fft.h +0 -49
- data/ext/gsl_native/include/rb_gsl_fit.h +0 -23
- data/ext/gsl_native/include/rb_gsl_function.h +0 -23
- data/ext/gsl_native/include/rb_gsl_graph.h +0 -68
- data/ext/gsl_native/include/rb_gsl_histogram.h +0 -63
- data/ext/gsl_native/include/rb_gsl_histogram3d.h +0 -97
- data/ext/gsl_native/include/rb_gsl_integration.h +0 -17
- data/ext/gsl_native/include/rb_gsl_interp.h +0 -41
- data/ext/gsl_native/include/rb_gsl_linalg.h +0 -21
- data/ext/gsl_native/include/rb_gsl_math.h +0 -20
- data/ext/gsl_native/include/rb_gsl_odeiv.h +0 -18
- data/ext/gsl_native/include/rb_gsl_poly.h +0 -67
- data/ext/gsl_native/include/rb_gsl_rational.h +0 -30
- data/ext/gsl_native/include/rb_gsl_rng.h +0 -20
- data/ext/gsl_native/include/rb_gsl_root.h +0 -22
- data/ext/gsl_native/include/rb_gsl_sf.h +0 -110
- data/ext/gsl_native/include/rb_gsl_statistics.h +0 -17
- data/ext/gsl_native/include/rb_gsl_tensor.h +0 -43
- data/ext/gsl_native/include/rb_gsl_with_narray.h +0 -31
- data/ext/gsl_native/include/templates_off.h +0 -87
- data/ext/gsl_native/include/templates_on.h +0 -241
- data/ext/gsl_native/integration.c +0 -1154
- data/ext/gsl_native/interp.c +0 -499
- data/ext/gsl_native/jacobi.c +0 -733
- data/ext/gsl_native/linalg.c +0 -3915
- data/ext/gsl_native/linalg_complex.c +0 -726
- data/ext/gsl_native/math.c +0 -706
- data/ext/gsl_native/matrix.c +0 -36
- data/ext/gsl_native/matrix_complex.c +0 -1733
- data/ext/gsl_native/matrix_double.c +0 -557
- data/ext/gsl_native/matrix_int.c +0 -255
- data/ext/gsl_native/matrix_source.h +0 -2708
- data/ext/gsl_native/min.c +0 -219
- data/ext/gsl_native/monte.c +0 -978
- data/ext/gsl_native/multifit.c +0 -1862
- data/ext/gsl_native/multimin.c +0 -778
- data/ext/gsl_native/multimin_fsdf.c +0 -156
- data/ext/gsl_native/multiroots.c +0 -952
- data/ext/gsl_native/multiset.c +0 -210
- data/ext/gsl_native/ndlinear.c +0 -320
- data/ext/gsl_native/nmf.c +0 -171
- data/ext/gsl_native/nmf_wrap.c +0 -75
- data/ext/gsl_native/ntuple.c +0 -469
- data/ext/gsl_native/odeiv.c +0 -947
- data/ext/gsl_native/ool.c +0 -879
- data/ext/gsl_native/permutation.c +0 -598
- data/ext/gsl_native/poly.c +0 -39
- data/ext/gsl_native/poly2.c +0 -265
- data/ext/gsl_native/poly_source.h +0 -1871
- data/ext/gsl_native/qrng.c +0 -160
- data/ext/gsl_native/randist.c +0 -1848
- data/ext/gsl_native/rational.c +0 -480
- data/ext/gsl_native/rng.c +0 -595
- data/ext/gsl_native/root.c +0 -407
- data/ext/gsl_native/sf.c +0 -1446
- data/ext/gsl_native/sf_airy.c +0 -200
- data/ext/gsl_native/sf_bessel.c +0 -871
- data/ext/gsl_native/sf_clausen.c +0 -28
- data/ext/gsl_native/sf_coulomb.c +0 -206
- data/ext/gsl_native/sf_coupling.c +0 -121
- data/ext/gsl_native/sf_dawson.c +0 -29
- data/ext/gsl_native/sf_debye.c +0 -148
- data/ext/gsl_native/sf_dilog.c +0 -43
- data/ext/gsl_native/sf_elementary.c +0 -46
- data/ext/gsl_native/sf_ellint.c +0 -206
- data/ext/gsl_native/sf_elljac.c +0 -30
- data/ext/gsl_native/sf_erfc.c +0 -89
- data/ext/gsl_native/sf_exp.c +0 -169
- data/ext/gsl_native/sf_expint.c +0 -201
- data/ext/gsl_native/sf_fermi_dirac.c +0 -148
- data/ext/gsl_native/sf_gamma.c +0 -343
- data/ext/gsl_native/sf_gegenbauer.c +0 -97
- data/ext/gsl_native/sf_hyperg.c +0 -203
- data/ext/gsl_native/sf_laguerre.c +0 -113
- data/ext/gsl_native/sf_lambert.c +0 -47
- data/ext/gsl_native/sf_legendre.c +0 -368
- data/ext/gsl_native/sf_log.c +0 -105
- data/ext/gsl_native/sf_mathieu.c +0 -235
- data/ext/gsl_native/sf_power.c +0 -47
- data/ext/gsl_native/sf_psi.c +0 -89
- data/ext/gsl_native/sf_synchrotron.c +0 -48
- data/ext/gsl_native/sf_transport.c +0 -76
- data/ext/gsl_native/sf_trigonometric.c +0 -210
- data/ext/gsl_native/sf_zeta.c +0 -115
- data/ext/gsl_native/signal.c +0 -303
- data/ext/gsl_native/siman.c +0 -713
- data/ext/gsl_native/sort.c +0 -207
- data/ext/gsl_native/spline.c +0 -377
- data/ext/gsl_native/stats.c +0 -787
- data/ext/gsl_native/sum.c +0 -168
- data/ext/gsl_native/tamu_anova.c +0 -56
- data/ext/gsl_native/tensor.c +0 -35
- data/ext/gsl_native/tensor_source.h +0 -1122
- data/ext/gsl_native/vector.c +0 -35
- data/ext/gsl_native/vector_complex.c +0 -2241
- data/ext/gsl_native/vector_double.c +0 -1433
- data/ext/gsl_native/vector_int.c +0 -202
- data/ext/gsl_native/vector_source.h +0 -3321
- data/ext/gsl_native/wavelet.c +0 -923
- data/lib/gsl.rb +0 -8
- data/lib/gsl/gnuplot.rb +0 -41
- data/lib/gsl/oper.rb +0 -43
- data/lib/gsl/version.rb +0 -3
- data/lib/ool.rb +0 -22
- data/lib/ool/conmin.rb +0 -30
- data/lib/rbgsl.rb +0 -1
- data/rdoc/alf.rdoc +0 -77
- data/rdoc/blas.rdoc +0 -269
- data/rdoc/bspline.rdoc +0 -42
- data/rdoc/changes.rdoc +0 -159
- data/rdoc/cheb.rdoc +0 -99
- data/rdoc/cholesky_complex.rdoc +0 -46
- data/rdoc/combi.rdoc +0 -125
- data/rdoc/complex.rdoc +0 -210
- data/rdoc/const.rdoc +0 -546
- data/rdoc/dht.rdoc +0 -122
- data/rdoc/diff.rdoc +0 -133
- data/rdoc/ehandling.rdoc +0 -50
- data/rdoc/eigen.rdoc +0 -401
- data/rdoc/fft.rdoc +0 -535
- data/rdoc/fit.rdoc +0 -284
- data/rdoc/function.rdoc +0 -94
- data/rdoc/graph.rdoc +0 -137
- data/rdoc/hist.rdoc +0 -409
- data/rdoc/hist2d.rdoc +0 -279
- data/rdoc/hist3d.rdoc +0 -112
- data/rdoc/integration.rdoc +0 -398
- data/rdoc/interp.rdoc +0 -231
- data/rdoc/intro.rdoc +0 -27
- data/rdoc/linalg.rdoc +0 -681
- data/rdoc/linalg_complex.rdoc +0 -88
- data/rdoc/math.rdoc +0 -276
- data/rdoc/matrix.rdoc +0 -1093
- data/rdoc/min.rdoc +0 -189
- data/rdoc/monte.rdoc +0 -234
- data/rdoc/multimin.rdoc +0 -312
- data/rdoc/multiroot.rdoc +0 -293
- data/rdoc/narray.rdoc +0 -177
- data/rdoc/ndlinear.rdoc +0 -250
- data/rdoc/nonlinearfit.rdoc +0 -348
- data/rdoc/ntuple.rdoc +0 -88
- data/rdoc/odeiv.rdoc +0 -378
- data/rdoc/perm.rdoc +0 -221
- data/rdoc/poly.rdoc +0 -335
- data/rdoc/qrng.rdoc +0 -90
- data/rdoc/randist.rdoc +0 -233
- data/rdoc/ref.rdoc +0 -93
- data/rdoc/rng.rdoc +0 -203
- data/rdoc/roots.rdoc +0 -305
- data/rdoc/sf.rdoc +0 -1622
- data/rdoc/siman.rdoc +0 -89
- data/rdoc/sort.rdoc +0 -94
- data/rdoc/start.rdoc +0 -16
- data/rdoc/stats.rdoc +0 -219
- data/rdoc/sum.rdoc +0 -65
- data/rdoc/tensor.rdoc +0 -251
- data/rdoc/tut.rdoc +0 -5
- data/rdoc/use.rdoc +0 -177
- data/rdoc/vector.rdoc +0 -1243
- data/rdoc/vector_complex.rdoc +0 -347
- data/rdoc/wavelet.rdoc +0 -218
- data/test/gsl/blas_test.rb +0 -79
- data/test/gsl/bspline_test.rb +0 -63
- data/test/gsl/cdf_test.rb +0 -1512
- data/test/gsl/cheb_test.rb +0 -80
- data/test/gsl/combination_test.rb +0 -100
- data/test/gsl/complex_test.rb +0 -20
- data/test/gsl/const_test.rb +0 -29
- data/test/gsl/deriv_test.rb +0 -62
- data/test/gsl/dht_test.rb +0 -79
- data/test/gsl/diff_test.rb +0 -53
- data/test/gsl/eigen_test.rb +0 -563
- data/test/gsl/err_test.rb +0 -23
- data/test/gsl/fit_test.rb +0 -101
- data/test/gsl/histo_test.rb +0 -14
- data/test/gsl/index_test.rb +0 -61
- data/test/gsl/integration_test.rb +0 -274
- data/test/gsl/interp_test.rb +0 -27
- data/test/gsl/linalg_test.rb +0 -463
- data/test/gsl/matrix_nmf_test.rb +0 -37
- data/test/gsl/matrix_test.rb +0 -98
- data/test/gsl/min_test.rb +0 -89
- data/test/gsl/monte_test.rb +0 -77
- data/test/gsl/multifit_test.rb +0 -753
- data/test/gsl/multimin_test.rb +0 -157
- data/test/gsl/multiroot_test.rb +0 -135
- data/test/gsl/multiset_test.rb +0 -52
- data/test/gsl/odeiv_test.rb +0 -275
- data/test/gsl/oper_test.rb +0 -98
- data/test/gsl/poly_test.rb +0 -338
- data/test/gsl/qrng_test.rb +0 -94
- data/test/gsl/quartic_test.rb +0 -28
- data/test/gsl/randist_test.rb +0 -122
- data/test/gsl/rng_test.rb +0 -303
- data/test/gsl/roots_test.rb +0 -78
- data/test/gsl/sf_test.rb +0 -2079
- data/test/gsl/stats_test.rb +0 -122
- data/test/gsl/sum_test.rb +0 -69
- data/test/gsl/tensor_test.rb +0 -396
- data/test/gsl/vector_test.rb +0 -223
- data/test/gsl/wavelet_test.rb +0 -130
- data/test/gsl_test.rb +0 -321
- data/test/test_helper.rb +0 -42
- data/uncrustify.cfg +0 -1693
data/ext/gsl_native/multifit.c
DELETED
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/*
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multifit.c
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Ruby/GSL: Ruby extension library for GSL (GNU Scientific Library)
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(C) Copyright 2004 by Yoshiki Tsunesada
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Ruby/GSL is free software: you can redistribute it and/or modify it
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under the terms of the GNU General Public License.
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This library is distributed in the hope that it will be useful, but
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WITHOUT ANY WARRANTY.
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*/
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#include "include/rb_gsl_fit.h"
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#include "include/rb_gsl_function.h"
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#include "include/rb_gsl_common.h"
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#ifdef HAVE_NDLINEAR_GSL_MULTIFIT_NDLINEAR_H
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#include <ndlinear/gsl_multifit_ndlinear.h>
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void Init_ndlinear(VALUE module);
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#endif
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#ifndef CHECK_WORKSPACE
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#define CHECK_WORKSPACE(x) if(CLASS_OF(x)!=cgsl_multifit_workspace) \
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rb_raise(rb_eTypeError, \
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"wrong argument type %s (GSL::MultiFit::Workspace expected)", \
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rb_class2name(CLASS_OF(x)));
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#endif
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#ifndef CHECK_MULTIFIT_FUNCTION_FDF
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#define CHECK_MULTIFIT_FUNCTION_FDF(x) if(CLASS_OF(x)!=cgsl_multifit_function_fdf) \
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rb_raise(rb_eTypeError, \
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"wrong argument type %s (GSL::MultiFit::Workspace expected)", \
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rb_class2name(CLASS_OF(x)));
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#endif
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static VALUE cgsl_multifit_workspace;
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static VALUE cgsl_multifit_function_fdf;
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enum MultiFit_Solver_Type {
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GSL_MULTIFIT_FDFSOLVER_LMSDER,
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GSL_MULTIFIT_FDFSOLVER_LMDER,
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};
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static VALUE rb_gsl_multifit_workspace_new(VALUE klass, VALUE n, VALUE p)
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{
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gsl_multifit_linear_workspace *w = NULL;
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CHECK_FIXNUM(n); CHECK_FIXNUM(p);
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w = gsl_multifit_linear_alloc(FIX2INT(n), FIX2INT(p));
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return Data_Wrap_Struct(cgsl_multifit_workspace, 0, gsl_multifit_linear_free, w);
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}
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static VALUE rb_gsl_multifit_linear(int argc, VALUE *argv, VALUE obj)
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{
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gsl_multifit_linear_workspace *space = NULL;
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gsl_matrix *x = NULL, *cov = NULL;
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gsl_vector *y = NULL, *c = NULL;
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double chisq;
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int status, flag = 0;
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VALUE vc, vcov;
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if (argc != 2 && argc != 3)
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rb_raise(rb_eArgError, "wrong number of arguments (%d for 2 or 3)", argc);
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Data_Get_Matrix(argv[0], x);
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Data_Get_Vector(argv[1], y);
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if (argc == 3) {
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CHECK_WORKSPACE(argv[2]);
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Data_Get_Struct(argv[2], gsl_multifit_linear_workspace, space);
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} else {
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space = gsl_multifit_linear_alloc(x->size1, x->size2);
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flag = 1;
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}
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cov = gsl_matrix_alloc(x->size2, x->size2);
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c = gsl_vector_alloc(x->size2);
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status = gsl_multifit_linear(x, y, c, cov, &chisq, space);
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if (flag == 1) gsl_multifit_linear_free(space);
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vc = Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free, c);
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vcov = Data_Wrap_Struct(cgsl_matrix, 0, gsl_matrix_free, cov);
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return rb_ary_new3(4, vc, vcov, rb_float_new(chisq), INT2FIX(status));
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}
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static VALUE rb_gsl_multifit_wlinear(int argc, VALUE *argv, VALUE obj)
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{
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gsl_multifit_linear_workspace *space = NULL;
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gsl_matrix *x = NULL, *cov = NULL;
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gsl_vector *w = NULL, *y = NULL, *c = NULL;
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double chisq;
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int status, flag = 0;
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VALUE vc, vcov;
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if (argc != 3 && argc != 4)
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rb_raise(rb_eArgError, "wrong number of arguments (%d for 3 or 4)", argc);
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Data_Get_Matrix(argv[0], x);
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Data_Get_Vector(argv[1], w);
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Data_Get_Vector(argv[2], y);
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if (argc == 4) {
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CHECK_WORKSPACE(argv[3]);
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Data_Get_Struct(argv[3], gsl_multifit_linear_workspace, space);
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} else {
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space = gsl_multifit_linear_alloc(x->size1, x->size2);
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flag = 1;
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}
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cov = gsl_matrix_alloc(x->size2, x->size2);
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c = gsl_vector_alloc(x->size2);
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status = gsl_multifit_wlinear(x, w, y, c, cov, &chisq, space);
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if (flag == 1) gsl_multifit_linear_free(space);
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vc = Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free, c);
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vcov = Data_Wrap_Struct(cgsl_matrix, 0, gsl_matrix_free, cov);
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return rb_ary_new3(4, vc, vcov, rb_float_new(chisq), INT2FIX(status));
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}
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static void calc_X_power(gsl_matrix *X, gsl_vector *x, size_t order)
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{
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size_t i, j;
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double val;
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for (i = 0; i < x->size; i++) {
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val = 1.0;
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gsl_matrix_set(X, i, 0, val);
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for (j = 1; j <= order; j++) {
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val *= gsl_vector_get(x, i);
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gsl_matrix_set(X, i, j, val);
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}
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}
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}
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static void calc_X_legendre(gsl_matrix *X, gsl_vector *v, size_t order)
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{
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size_t i, n;
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double a, b, c, x;
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for (i = 0; i < v->size; i++) {
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a = 1.0;
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b = gsl_vector_get(v, i);
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gsl_matrix_set(X, i, 0, a);
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gsl_matrix_set(X, i, 1, b);
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for (n = 2; n <= order; n++) {
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x = gsl_vector_get(v, i);
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c = ((2*n-1)*x*b - (n-1)*a)/n;
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gsl_matrix_set(X, i, n, c);
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a = b;
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b = c;
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}
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}
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}
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static VALUE rb_gsl_multifit_XXXfit(int argc, VALUE *argv, VALUE obj,
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void (*fn)(gsl_matrix*, gsl_vector*,size_t))
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{
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gsl_multifit_linear_workspace *space = NULL;
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gsl_matrix *X = NULL, *cov = NULL;
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gsl_vector *x, *y = NULL, *w, *c = NULL, *err;
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gsl_vector_view xx, yy, ww;
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size_t order, i;
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double chisq;
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int status, flag = 0, flagw = 0;
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VALUE vc, verr;
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if (argc != 3 && argc != 4 && argc != 5)
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rb_raise(rb_eArgError, "wrong number of arguments (%d for 3 or 4)", argc);
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x = &xx.vector;
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w = &ww.vector;
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y = &yy.vector;
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Data_Get_Vector(argv[0], x);
|
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if (argc >= 3 && VECTOR_P(argv[2])) {
|
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Data_Get_Vector(argv[1], w);
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Data_Get_Vector(argv[2], y);
|
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order = NUM2INT(argv[3]);
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flagw = 1;
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} else {
|
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Data_Get_Vector(argv[1], y);
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order = NUM2INT(argv[2]);
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flagw = 0;
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}
|
168
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if (rb_obj_is_kind_of(argv[argc-1], cgsl_multifit_workspace)) {
|
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Data_Get_Struct(argv[argc-1], gsl_multifit_linear_workspace, space);
|
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} else {
|
171
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space = gsl_multifit_linear_alloc(x->size, order + 1);
|
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flag = 1;
|
173
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}
|
174
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cov = gsl_matrix_alloc(order + 1, order + 1);
|
175
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c = gsl_vector_alloc(order + 1);
|
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X = gsl_matrix_alloc(x->size, order + 1);
|
177
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(*fn)(X, x, order);
|
178
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if (flagw == 0) status = gsl_multifit_linear(X, y, c, cov, &chisq, space);
|
179
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else status = gsl_multifit_wlinear(X, w, y, c, cov, &chisq, space);
|
180
|
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if (flag == 1) gsl_multifit_linear_free(space);
|
181
|
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err = gsl_vector_alloc(order + 1);
|
182
|
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vc = Data_Wrap_Struct(cgsl_poly, 0, gsl_vector_free, c);
|
183
|
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verr = Data_Wrap_Struct(cgsl_poly, 0, gsl_vector_free, err);
|
184
|
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for (i = 0; i < err->size; i++)
|
185
|
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gsl_vector_set(err, i, sqrt(chisq/((double)x->size-err->size)*gsl_matrix_get(cov, i, i)));
|
186
|
-
gsl_matrix_free(X);
|
187
|
-
gsl_matrix_free(cov);
|
188
|
-
return rb_ary_new3(4, vc, verr, rb_float_new(chisq), INT2FIX(status));
|
189
|
-
}
|
190
|
-
|
191
|
-
static VALUE rb_gsl_multifit_polyfit(int argc, VALUE *argv, VALUE obj)
|
192
|
-
{
|
193
|
-
return rb_gsl_multifit_XXXfit(argc, argv, obj, calc_X_power);
|
194
|
-
}
|
195
|
-
|
196
|
-
static VALUE rb_gsl_multifit_legfit(int argc, VALUE *argv, VALUE obj)
|
197
|
-
{
|
198
|
-
return rb_gsl_multifit_XXXfit(argc, argv, obj, calc_X_legendre);
|
199
|
-
}
|
200
|
-
|
201
|
-
/**********/
|
202
|
-
|
203
|
-
static VALUE rb_gsl_multifit_fdfsolver_new(int argc, VALUE *argv, VALUE klass)
|
204
|
-
{
|
205
|
-
const gsl_multifit_fdfsolver_type *T;
|
206
|
-
gsl_multifit_fdfsolver *solver = NULL;
|
207
|
-
size_t n, p;
|
208
|
-
char name[64];
|
209
|
-
switch (argc) {
|
210
|
-
case 3:
|
211
|
-
switch (TYPE(argv[0])) {
|
212
|
-
case T_STRING:
|
213
|
-
strcpy(name, STR2CSTR(argv[0]));
|
214
|
-
if (str_tail_grep(name, "lmsder") == 0) {
|
215
|
-
T = gsl_multifit_fdfsolver_lmsder;
|
216
|
-
} else if (str_tail_grep(name, "lmder") == 0) {
|
217
|
-
T = gsl_multifit_fdfsolver_lmder;
|
218
|
-
} else {
|
219
|
-
rb_raise(rb_eTypeError, "unknown solver type %s (lmsder of lmder)",
|
220
|
-
name);
|
221
|
-
}
|
222
|
-
break;
|
223
|
-
case T_FIXNUM:
|
224
|
-
switch (FIX2INT(argv[0])) {
|
225
|
-
case GSL_MULTIFIT_FDFSOLVER_LMSDER:
|
226
|
-
T = gsl_multifit_fdfsolver_lmsder;
|
227
|
-
break;
|
228
|
-
case GSL_MULTIFIT_FDFSOLVER_LMDER:
|
229
|
-
T = gsl_multifit_fdfsolver_lmder;
|
230
|
-
break;
|
231
|
-
default:
|
232
|
-
rb_raise(rb_eTypeError,
|
233
|
-
"unknown solver type (GSL::MultiFit::FdfSolver::LMSDER or LMDER expected)");
|
234
|
-
break;
|
235
|
-
}
|
236
|
-
break;
|
237
|
-
default:
|
238
|
-
rb_raise(rb_eTypeError, "wrong argument type %s (Fixnum or String)",
|
239
|
-
rb_class2name(CLASS_OF(argv[0])));
|
240
|
-
break;
|
241
|
-
}
|
242
|
-
CHECK_FIXNUM(argv[1]); CHECK_FIXNUM(argv[2]);
|
243
|
-
n = FIX2INT(argv[1]);
|
244
|
-
p = FIX2INT(argv[2]);
|
245
|
-
break;
|
246
|
-
case 2:
|
247
|
-
CHECK_FIXNUM(argv[0]); CHECK_FIXNUM(argv[1]);
|
248
|
-
T = gsl_multifit_fdfsolver_lmsder;
|
249
|
-
n = FIX2INT(argv[0]);
|
250
|
-
p = FIX2INT(argv[1]);
|
251
|
-
break;
|
252
|
-
default:
|
253
|
-
rb_raise(rb_eArgError, "wrong number of arguments");
|
254
|
-
break;
|
255
|
-
}
|
256
|
-
solver = gsl_multifit_fdfsolver_alloc(T, n, p);
|
257
|
-
return Data_Wrap_Struct(klass, 0, gsl_multifit_fdfsolver_free, solver);
|
258
|
-
}
|
259
|
-
|
260
|
-
static VALUE rb_gsl_multifit_fdfsolver_set(VALUE obj, VALUE ff, VALUE xx)
|
261
|
-
{
|
262
|
-
gsl_multifit_fdfsolver *solver = NULL;
|
263
|
-
gsl_multifit_function_fdf *f = NULL;
|
264
|
-
gsl_vector *x = NULL;
|
265
|
-
int status;
|
266
|
-
CHECK_MULTIFIT_FUNCTION_FDF(ff);
|
267
|
-
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
268
|
-
Data_Get_Struct(ff, gsl_multifit_function_fdf, f);
|
269
|
-
Data_Get_Vector(xx, x);
|
270
|
-
status = gsl_multifit_fdfsolver_set(solver, f, x);
|
271
|
-
return INT2FIX(status);
|
272
|
-
}
|
273
|
-
|
274
|
-
static VALUE rb_gsl_multifit_fdfsolver_name(VALUE obj)
|
275
|
-
{
|
276
|
-
gsl_multifit_fdfsolver *solver = NULL;
|
277
|
-
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
278
|
-
return rb_str_new2(gsl_multifit_fdfsolver_name(solver));
|
279
|
-
}
|
280
|
-
|
281
|
-
static VALUE rb_gsl_multifit_fdfsolver_iterate(VALUE obj)
|
282
|
-
{
|
283
|
-
gsl_multifit_fdfsolver *solver = NULL;
|
284
|
-
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
285
|
-
return INT2FIX(gsl_multifit_fdfsolver_iterate(solver));
|
286
|
-
}
|
287
|
-
|
288
|
-
static VALUE rb_gsl_multifit_fdfsolver_position(VALUE obj)
|
289
|
-
{
|
290
|
-
gsl_multifit_fdfsolver *solver = NULL;
|
291
|
-
gsl_vector *x = NULL;
|
292
|
-
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
293
|
-
x = gsl_multifit_fdfsolver_position(solver);
|
294
|
-
return Data_Wrap_Struct(cgsl_vector_view_ro, 0, NULL, x);
|
295
|
-
}
|
296
|
-
|
297
|
-
static VALUE rb_gsl_multifit_fdfsolver_print_state(VALUE obj, VALUE i)
|
298
|
-
{
|
299
|
-
gsl_multifit_fdfsolver *solver = NULL;
|
300
|
-
CHECK_FIXNUM(i);
|
301
|
-
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
302
|
-
printf("iter: %d x = %15.8f %15.8f %15.8f |f(x)| = %g\n",
|
303
|
-
(int) FIX2INT(i), gsl_vector_get(solver->x, 0), gsl_vector_get(solver->x, 1),
|
304
|
-
gsl_vector_get(solver->x, 2), gsl_blas_dnrm2(solver->f));
|
305
|
-
return Qtrue;
|
306
|
-
}
|
307
|
-
|
308
|
-
static VALUE rb_gsl_multifit_fdfsolver_fdf(VALUE obj)
|
309
|
-
{
|
310
|
-
gsl_multifit_fdfsolver *solver = NULL;
|
311
|
-
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
312
|
-
return Data_Wrap_Struct(cgsl_multifit_function_fdf, 0, NULL, solver->fdf);
|
313
|
-
}
|
314
|
-
|
315
|
-
static VALUE rb_gsl_multifit_fdfsolver_test_delta(VALUE obj, VALUE r, VALUE a)
|
316
|
-
{
|
317
|
-
gsl_multifit_fdfsolver *solver = NULL;
|
318
|
-
Need_Float(r); Need_Float(a);
|
319
|
-
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
320
|
-
return INT2FIX(gsl_multifit_test_delta(solver->dx, solver->x, NUM2DBL(r), NUM2DBL(a)));
|
321
|
-
}
|
322
|
-
|
323
|
-
static VALUE rb_gsl_multifit_fdfsolver_test_gradient(int argc, VALUE *argv, VALUE obj)
|
324
|
-
{
|
325
|
-
gsl_multifit_fdfsolver *solver = NULL;
|
326
|
-
gsl_vector *g = NULL;
|
327
|
-
int status;
|
328
|
-
double epsabs;
|
329
|
-
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
330
|
-
switch (argc) {
|
331
|
-
case 1:
|
332
|
-
Need_Float(argv[0]);
|
333
|
-
g = gsl_vector_alloc(solver->x->size);
|
334
|
-
gsl_multifit_gradient(solver->J, solver->f, g);
|
335
|
-
epsabs = NUM2DBL(argv[0]);
|
336
|
-
status = gsl_multifit_test_gradient(g, epsabs);
|
337
|
-
gsl_vector_free(g);
|
338
|
-
break;
|
339
|
-
case 2:
|
340
|
-
Need_Float(argv[1]);
|
341
|
-
Data_Get_Vector(argv[0], g);
|
342
|
-
epsabs = NUM2DBL(argv[1]);
|
343
|
-
status = gsl_multifit_test_gradient(g, epsabs);
|
344
|
-
break;
|
345
|
-
default:
|
346
|
-
rb_raise(rb_eArgError, "wrong number of arguments");
|
347
|
-
break;
|
348
|
-
}
|
349
|
-
return INT2FIX(status);
|
350
|
-
}
|
351
|
-
|
352
|
-
static VALUE rb_gsl_multifit_fdfsolver_gradient(int argc, VALUE *argv, VALUE obj)
|
353
|
-
{
|
354
|
-
gsl_multifit_fdfsolver *solver = NULL;
|
355
|
-
gsl_vector *g = NULL;
|
356
|
-
// local variable "status" declared and set, but never used
|
357
|
-
//int status;
|
358
|
-
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
359
|
-
if (argc == 1) {
|
360
|
-
Data_Get_Vector(argv[0], g);
|
361
|
-
return INT2FIX(gsl_multifit_gradient(solver->J, solver->f, g));
|
362
|
-
} else {
|
363
|
-
g = gsl_vector_alloc(solver->x->size);
|
364
|
-
/*status =*/ gsl_multifit_gradient(solver->J, solver->f, g);
|
365
|
-
return Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free, g);
|
366
|
-
}
|
367
|
-
}
|
368
|
-
|
369
|
-
static VALUE rb_gsl_multifit_fdfsolver_covar(int argc, VALUE *argv, VALUE obj)
|
370
|
-
{
|
371
|
-
gsl_multifit_fdfsolver *solver = NULL;
|
372
|
-
gsl_matrix *covar = NULL;
|
373
|
-
double epsrel;
|
374
|
-
// local variable "status" declared and set, but never used
|
375
|
-
//int status;
|
376
|
-
if (argc < 1) rb_raise(rb_eArgError, "too few arguments");
|
377
|
-
Need_Float(argv[0]);
|
378
|
-
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
379
|
-
epsrel = NUM2DBL(argv[0]);
|
380
|
-
switch (argc) {
|
381
|
-
case 1:
|
382
|
-
covar = gsl_matrix_alloc(solver->x->size, solver->x->size);
|
383
|
-
/*status =*/ gsl_multifit_covar(solver->J, epsrel, covar);
|
384
|
-
return Data_Wrap_Struct(cgsl_matrix, 0, gsl_matrix_free, covar);
|
385
|
-
break;
|
386
|
-
case 2:
|
387
|
-
Data_Get_Matrix(argv[1], covar);
|
388
|
-
return INT2FIX(gsl_multifit_covar(solver->J, epsrel, covar));
|
389
|
-
break;
|
390
|
-
default:
|
391
|
-
rb_raise(rb_eArgError, "wrong number of arguments");
|
392
|
-
break;
|
393
|
-
}
|
394
|
-
}
|
395
|
-
|
396
|
-
static VALUE rb_gsl_multifit_fdfsolver_x(VALUE obj)
|
397
|
-
{
|
398
|
-
gsl_multifit_fdfsolver *solver = NULL;
|
399
|
-
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
400
|
-
return Data_Wrap_Struct(cgsl_vector_view_ro, 0, NULL, solver->x);
|
401
|
-
}
|
402
|
-
|
403
|
-
static VALUE rb_gsl_multifit_fdfsolver_dx(VALUE obj)
|
404
|
-
{
|
405
|
-
gsl_multifit_fdfsolver *solver = NULL;
|
406
|
-
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
407
|
-
return Data_Wrap_Struct(cgsl_vector_view_ro, 0, NULL, solver->dx);
|
408
|
-
}
|
409
|
-
|
410
|
-
static VALUE rb_gsl_multifit_fdfsolver_f(VALUE obj)
|
411
|
-
{
|
412
|
-
gsl_multifit_fdfsolver *solver = NULL;
|
413
|
-
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
414
|
-
return Data_Wrap_Struct(cgsl_vector_view_ro, 0, NULL, solver->f);
|
415
|
-
}
|
416
|
-
|
417
|
-
static VALUE rb_gsl_multifit_fdfsolver_J(VALUE obj)
|
418
|
-
{
|
419
|
-
gsl_multifit_fdfsolver *solver = NULL;
|
420
|
-
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
421
|
-
return Data_Wrap_Struct(cgsl_matrix_view_ro, 0, NULL, solver->J);
|
422
|
-
}
|
423
|
-
|
424
|
-
/* singleton */
|
425
|
-
static VALUE rb_gsl_multifit_test_delta(VALUE obj, VALUE ddx, VALUE xx, VALUE a, VALUE r)
|
426
|
-
{
|
427
|
-
gsl_vector *dx = NULL, *x = NULL;
|
428
|
-
Need_Float(a); Need_Float(r);
|
429
|
-
Data_Get_Vector(ddx, dx);
|
430
|
-
Data_Get_Vector(xx, x);
|
431
|
-
return INT2FIX(gsl_multifit_test_delta(dx, x, NUM2DBL(a), NUM2DBL(r)));
|
432
|
-
}
|
433
|
-
|
434
|
-
static VALUE rb_gsl_multifit_test_gradient(VALUE obj, VALUE gg, VALUE a)
|
435
|
-
{
|
436
|
-
gsl_vector *g = NULL;
|
437
|
-
Need_Float(a);
|
438
|
-
Data_Get_Vector(gg, g);
|
439
|
-
return INT2FIX(gsl_multifit_test_gradient(g, NUM2DBL(a)));
|
440
|
-
}
|
441
|
-
|
442
|
-
static VALUE rb_gsl_multifit_gradient(int argc, VALUE *argv, VALUE obj)
|
443
|
-
{
|
444
|
-
gsl_vector *g = NULL, *f = NULL;
|
445
|
-
gsl_matrix *J = NULL;
|
446
|
-
// local variable "status" declared and set, but never used
|
447
|
-
//int status;
|
448
|
-
switch (argc) {
|
449
|
-
case 2:
|
450
|
-
Data_Get_Matrix(argv[0], J);
|
451
|
-
Data_Get_Vector(argv[1], f);
|
452
|
-
g = gsl_vector_alloc(f->size);
|
453
|
-
/*status =*/ gsl_multifit_gradient(J, f, g);
|
454
|
-
return Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free, g);
|
455
|
-
break;
|
456
|
-
case 3:
|
457
|
-
Data_Get_Matrix(argv[0], J);
|
458
|
-
Data_Get_Vector(argv[1], f);
|
459
|
-
Data_Get_Vector(argv[2], g);
|
460
|
-
return INT2FIX(gsl_multifit_gradient(J, f, g));
|
461
|
-
break;
|
462
|
-
default:
|
463
|
-
rb_raise(rb_eArgError, "wrong number of arguments");
|
464
|
-
break;
|
465
|
-
}
|
466
|
-
}
|
467
|
-
|
468
|
-
static VALUE rb_gsl_multifit_covar(int argc, VALUE *argv, VALUE obj)
|
469
|
-
{
|
470
|
-
gsl_matrix *J = NULL, *covar = NULL;
|
471
|
-
double epsrel;
|
472
|
-
int status;
|
473
|
-
switch (argc) {
|
474
|
-
case 2:
|
475
|
-
Need_Float(argv[1]);
|
476
|
-
Data_Get_Matrix(argv[0], J);
|
477
|
-
epsrel = NUM2DBL(argv[1]);
|
478
|
-
covar = gsl_matrix_alloc(J->size2, J->size2);
|
479
|
-
/*status =*/ gsl_multifit_covar(J, epsrel, covar);
|
480
|
-
return Data_Wrap_Struct(cgsl_matrix, 0, gsl_matrix_free, covar);
|
481
|
-
break;
|
482
|
-
case 3:
|
483
|
-
Need_Float(argv[1]);
|
484
|
-
Data_Get_Matrix(argv[0], J);
|
485
|
-
epsrel = NUM2DBL(argv[1]);
|
486
|
-
Data_Get_Matrix(argv[2], covar);
|
487
|
-
status = gsl_multifit_covar(J, epsrel, covar);
|
488
|
-
return INT2FIX(status);
|
489
|
-
break;
|
490
|
-
default:
|
491
|
-
rb_raise(rb_eArgError, "wrong number of arguments");
|
492
|
-
break;
|
493
|
-
}
|
494
|
-
}
|
495
|
-
|
496
|
-
static void rb_gsl_multifit_define_const(VALUE klass)
|
497
|
-
{
|
498
|
-
rb_define_const(klass, "LMSDER",
|
499
|
-
INT2FIX(GSL_MULTIFIT_FDFSOLVER_LMSDER));
|
500
|
-
rb_define_const(klass, "LMDER",
|
501
|
-
INT2FIX(GSL_MULTIFIT_FDFSOLVER_LMDER));
|
502
|
-
|
503
|
-
rb_define_const(klass, "Lmsder",
|
504
|
-
INT2FIX(GSL_MULTIFIT_FDFSOLVER_LMSDER));
|
505
|
-
rb_define_const(klass, "Lmder",
|
506
|
-
INT2FIX(GSL_MULTIFIT_FDFSOLVER_LMDER));
|
507
|
-
}
|
508
|
-
|
509
|
-
static void gsl_multifit_function_fdf_free(gsl_multifit_function_fdf *f);
|
510
|
-
static void gsl_multifit_function_fdf_free(gsl_multifit_function_fdf *f)
|
511
|
-
{
|
512
|
-
free((gsl_multifit_function_fdf *) f);
|
513
|
-
}
|
514
|
-
|
515
|
-
static void gsl_multifit_function_fdf_mark(gsl_multifit_function_fdf *F);
|
516
|
-
static void gsl_multifit_function_fdf_mark(gsl_multifit_function_fdf *F)
|
517
|
-
{
|
518
|
-
rb_gc_mark((VALUE) F->params);
|
519
|
-
}
|
520
|
-
|
521
|
-
static int gsl_multifit_function_fdf_f(const gsl_vector *x, void *params,
|
522
|
-
gsl_vector *f);
|
523
|
-
static int gsl_multifit_function_fdf_df(const gsl_vector *x, void *params,
|
524
|
-
gsl_matrix *J);
|
525
|
-
static int gsl_multifit_function_fdf_fdf(const gsl_vector *x, void *params,
|
526
|
-
gsl_vector *f, gsl_matrix *J);
|
527
|
-
|
528
|
-
static VALUE rb_gsl_multifit_function_fdf_set_procs(int argc, VALUE *argv, VALUE obj);
|
529
|
-
|
530
|
-
static VALUE rb_gsl_multifit_function_fdf_new(int argc, VALUE *argv, VALUE klass)
|
531
|
-
{
|
532
|
-
gsl_multifit_function_fdf *func = NULL;
|
533
|
-
VALUE obj;
|
534
|
-
func = ALLOC(gsl_multifit_function_fdf);
|
535
|
-
func->f = &gsl_multifit_function_fdf_f;
|
536
|
-
func->df = &gsl_multifit_function_fdf_df;
|
537
|
-
func->fdf = &gsl_multifit_function_fdf_fdf;
|
538
|
-
func->params = NULL;
|
539
|
-
obj = Data_Wrap_Struct(klass, gsl_multifit_function_fdf_mark, gsl_multifit_function_fdf_free, func);
|
540
|
-
switch (argc) {
|
541
|
-
case 0:
|
542
|
-
case 1:
|
543
|
-
break;
|
544
|
-
case 2:
|
545
|
-
case 3:
|
546
|
-
rb_gsl_multifit_function_fdf_set_procs(argc, argv, obj);
|
547
|
-
break;
|
548
|
-
default:
|
549
|
-
rb_raise(rb_eArgError, "wrong number of arguments (%d for 0-3)", argc);
|
550
|
-
break;
|
551
|
-
}
|
552
|
-
return obj;
|
553
|
-
}
|
554
|
-
|
555
|
-
static VALUE rb_gsl_multifit_function_fdf_set_procs(int argc, VALUE *argv, VALUE obj)
|
556
|
-
{
|
557
|
-
gsl_multifit_function_fdf *func = NULL;
|
558
|
-
VALUE ary;
|
559
|
-
Data_Get_Struct(obj, gsl_multifit_function_fdf, func);
|
560
|
-
if (func->params == NULL) {
|
561
|
-
ary = rb_ary_new2(4);
|
562
|
-
/* (VALUE) func->params = ary;*/
|
563
|
-
func->params = (void *) ary;
|
564
|
-
} else {
|
565
|
-
ary = (VALUE) func->params;
|
566
|
-
}
|
567
|
-
rb_ary_store(ary, 0, argv[0]);
|
568
|
-
rb_ary_store(ary, 1, argv[1]);
|
569
|
-
switch (argc) {
|
570
|
-
case 2:
|
571
|
-
break;
|
572
|
-
case 3:
|
573
|
-
if (TYPE(argv[2]) == T_FIXNUM) {
|
574
|
-
func->p = FIX2INT(argv[2]);
|
575
|
-
rb_ary_store(ary, 2, Qnil);
|
576
|
-
} else rb_ary_store(ary, 2, argv[2]);
|
577
|
-
break;
|
578
|
-
case 4:
|
579
|
-
if (TYPE(argv[2]) == T_FIXNUM) {
|
580
|
-
func->p = FIX2INT(argv[2]);
|
581
|
-
rb_ary_store(ary, 2, argv[3]);
|
582
|
-
} else {
|
583
|
-
func->p = FIX2INT(argv[3]);
|
584
|
-
rb_ary_store(ary, 2, argv[2]);
|
585
|
-
}
|
586
|
-
break;
|
587
|
-
default:
|
588
|
-
rb_raise(rb_eArgError, "wrong number of arguments (%d for 3 or 4)", argc);
|
589
|
-
break;
|
590
|
-
}
|
591
|
-
return obj;
|
592
|
-
}
|
593
|
-
|
594
|
-
static VALUE rb_gsl_multifit_function_fdf_set_data(int argc, VALUE *argv, VALUE obj)
|
595
|
-
{
|
596
|
-
VALUE ary, ary2;
|
597
|
-
gsl_multifit_function_fdf *func = NULL;
|
598
|
-
Data_Get_Struct(obj, gsl_multifit_function_fdf, func);
|
599
|
-
if (func->params == NULL) {
|
600
|
-
ary = rb_ary_new2(4);
|
601
|
-
/* (VALUE) func->params = ary;*/
|
602
|
-
func->params = (void *) ary;
|
603
|
-
} else {
|
604
|
-
ary = (VALUE) func->params;
|
605
|
-
}
|
606
|
-
switch (argc) {
|
607
|
-
case 2:
|
608
|
-
ary2 = rb_ary_new3(2, argv[0], argv[1]); /* t, y */
|
609
|
-
break;
|
610
|
-
case 3:
|
611
|
-
ary2 = rb_ary_new3(3, argv[0], argv[1], argv[2]); /* t, y, sigma */
|
612
|
-
break;
|
613
|
-
default:
|
614
|
-
rb_raise(rb_eArgError, "wrong number of arguments (%d for 2 or 3)", argc);
|
615
|
-
break;
|
616
|
-
}
|
617
|
-
func->n = NUM2INT(rb_funcall(argv[0], rb_intern("size"), 0));
|
618
|
-
rb_ary_store(ary, 3, ary2);
|
619
|
-
return obj;
|
620
|
-
}
|
621
|
-
|
622
|
-
static int gsl_multifit_function_fdf_f(const gsl_vector *x, void *params,
|
623
|
-
gsl_vector *f)
|
624
|
-
{
|
625
|
-
VALUE vt_y_sigma, vt, vy, vsigma, vf, vx, proc, ary;
|
626
|
-
ary = (VALUE) params;
|
627
|
-
vt_y_sigma = rb_ary_entry(ary, 3);
|
628
|
-
proc = rb_ary_entry(ary, 0);
|
629
|
-
vx = Data_Wrap_Struct(cgsl_vector, 0, NULL, (gsl_vector *) x);
|
630
|
-
vf = Data_Wrap_Struct(cgsl_vector, 0, NULL, f);
|
631
|
-
switch (RARRAY_LEN(vt_y_sigma)) {
|
632
|
-
case 2:
|
633
|
-
vt = rb_ary_entry(vt_y_sigma, 0);
|
634
|
-
vy = rb_ary_entry(vt_y_sigma, 1);
|
635
|
-
rb_funcall(proc, RBGSL_ID_call, 4, vx, vt, vy, vf);
|
636
|
-
break;
|
637
|
-
case 3:
|
638
|
-
vt = rb_ary_entry(vt_y_sigma, 0);
|
639
|
-
vy = rb_ary_entry(vt_y_sigma, 1);
|
640
|
-
vsigma = rb_ary_entry(vt_y_sigma,2);
|
641
|
-
rb_funcall(proc, RBGSL_ID_call, 5, vx, vt, vy, vsigma, vf);
|
642
|
-
break;
|
643
|
-
default:
|
644
|
-
rb_raise(rb_eArgError, "bad argument");
|
645
|
-
break;
|
646
|
-
}
|
647
|
-
return GSL_SUCCESS;
|
648
|
-
}
|
649
|
-
|
650
|
-
static int gsl_multifit_function_fdf_df(const gsl_vector *x, void *params,
|
651
|
-
gsl_matrix *J)
|
652
|
-
{
|
653
|
-
VALUE vt_y_sigma, vt, vy, vsigma, vJ, vx, proc, ary;
|
654
|
-
ary = (VALUE) params;
|
655
|
-
vt_y_sigma = rb_ary_entry(ary, 3);
|
656
|
-
proc = rb_ary_entry(ary, 1);
|
657
|
-
vx = Data_Wrap_Struct(cgsl_vector, 0, NULL, (gsl_vector *) x);
|
658
|
-
vJ = Data_Wrap_Struct(cgsl_matrix, 0, NULL, J);
|
659
|
-
switch (RARRAY_LEN(vt_y_sigma)) {
|
660
|
-
case 2:
|
661
|
-
vt = rb_ary_entry(vt_y_sigma, 0);
|
662
|
-
vy = rb_ary_entry(vt_y_sigma, 1);
|
663
|
-
rb_funcall(proc, RBGSL_ID_call, 4, vx, vt, vy, vJ);
|
664
|
-
break;
|
665
|
-
case 3:
|
666
|
-
vt = rb_ary_entry(vt_y_sigma, 0);
|
667
|
-
vy = rb_ary_entry(vt_y_sigma, 1);
|
668
|
-
vsigma = rb_ary_entry(vt_y_sigma,2);
|
669
|
-
rb_funcall(proc, RBGSL_ID_call, 5, vx, vt, vy, vsigma, vJ);
|
670
|
-
break;
|
671
|
-
default:
|
672
|
-
rb_raise(rb_eArgError, "bad argument");
|
673
|
-
break;
|
674
|
-
}
|
675
|
-
return GSL_SUCCESS;
|
676
|
-
}
|
677
|
-
|
678
|
-
static int gsl_multifit_function_fdf_fdf(const gsl_vector *x, void *params,
|
679
|
-
gsl_vector *f, gsl_matrix *J)
|
680
|
-
{
|
681
|
-
VALUE vt_y_sigma, vt, vy, vsigma, vf, vJ, vx, proc_f, proc_df, proc_fdf;
|
682
|
-
VALUE ary;
|
683
|
-
ary = (VALUE) params;
|
684
|
-
vt_y_sigma = rb_ary_entry(ary, 3);
|
685
|
-
proc_f = rb_ary_entry(ary, 0);
|
686
|
-
proc_df = rb_ary_entry(ary, 1);
|
687
|
-
proc_fdf = rb_ary_entry(ary, 2);
|
688
|
-
vx = Data_Wrap_Struct(cgsl_vector, 0, NULL, (gsl_vector *) x);
|
689
|
-
vf = Data_Wrap_Struct(cgsl_vector, 0, NULL, f);
|
690
|
-
vJ = Data_Wrap_Struct(cgsl_matrix, 0, NULL, J);
|
691
|
-
switch (RARRAY_LEN(vt_y_sigma)) {
|
692
|
-
case 2:
|
693
|
-
vt = rb_ary_entry(vt_y_sigma, 0);
|
694
|
-
vy = rb_ary_entry(vt_y_sigma, 1);
|
695
|
-
if (NIL_P(proc_fdf)) {
|
696
|
-
rb_funcall(proc_f, RBGSL_ID_call, 4, vx, vt, vy, vf);
|
697
|
-
rb_funcall(proc_df, RBGSL_ID_call, 4, vx, vt, vy, vJ);
|
698
|
-
} else
|
699
|
-
rb_funcall(proc_fdf, RBGSL_ID_call, 5, vx, vt, vy, vf, vJ);
|
700
|
-
break;
|
701
|
-
case 3:
|
702
|
-
vt = rb_ary_entry(vt_y_sigma, 0);
|
703
|
-
vy = rb_ary_entry(vt_y_sigma, 1);
|
704
|
-
vsigma = rb_ary_entry(vt_y_sigma,2);
|
705
|
-
if (NIL_P(proc_fdf)) {
|
706
|
-
rb_funcall(proc_f, RBGSL_ID_call, 5, vx, vt, vy, vsigma, vf);
|
707
|
-
rb_funcall(proc_df, RBGSL_ID_call, 5, vx, vt, vy, vsigma, vJ);
|
708
|
-
} else
|
709
|
-
rb_funcall(proc_fdf, RBGSL_ID_call, 6, vx, vt, vy, vsigma, vf, vJ);
|
710
|
-
break;
|
711
|
-
default:
|
712
|
-
rb_raise(rb_eArgError, "bad argument");
|
713
|
-
break;
|
714
|
-
}
|
715
|
-
return GSL_SUCCESS;
|
716
|
-
}
|
717
|
-
|
718
|
-
static VALUE rb_gsl_multifit_function_fdf_params(VALUE obj)
|
719
|
-
{
|
720
|
-
gsl_multifit_function_fdf *f = NULL;
|
721
|
-
Data_Get_Struct(obj, gsl_multifit_function_fdf, f);
|
722
|
-
return (VALUE) f->params;
|
723
|
-
}
|
724
|
-
|
725
|
-
static VALUE rb_gsl_multifit_function_fdf_n(VALUE obj)
|
726
|
-
{
|
727
|
-
gsl_multifit_function_fdf *f = NULL;
|
728
|
-
Data_Get_Struct(obj, gsl_multifit_function_fdf, f);
|
729
|
-
return INT2FIX(f->n);
|
730
|
-
}
|
731
|
-
|
732
|
-
static VALUE rb_gsl_multifit_function_fdf_set_n(VALUE obj, VALUE n)
|
733
|
-
{
|
734
|
-
gsl_multifit_function_fdf *f = NULL;
|
735
|
-
Data_Get_Struct(obj, gsl_multifit_function_fdf, f);
|
736
|
-
f->n = FIX2INT(n);
|
737
|
-
return obj;
|
738
|
-
}
|
739
|
-
|
740
|
-
static VALUE rb_gsl_multifit_function_fdf_p(VALUE obj)
|
741
|
-
{
|
742
|
-
gsl_multifit_function_fdf *f = NULL;
|
743
|
-
Data_Get_Struct(obj, gsl_multifit_function_fdf, f);
|
744
|
-
return INT2FIX(f->p);
|
745
|
-
}
|
746
|
-
|
747
|
-
/*****/
|
748
|
-
struct fitting_xydata {
|
749
|
-
gsl_vector *x, *y, *w;
|
750
|
-
};
|
751
|
-
|
752
|
-
/* Gaussian fit
|
753
|
-
y = y0 + A exp(-(x-x0/sigma)^2)
|
754
|
-
v[0] = y0
|
755
|
-
v[1] = A
|
756
|
-
v[2] = x0
|
757
|
-
v[3] = var = sigma^2
|
758
|
-
*/
|
759
|
-
static int Gaussian_f(const gsl_vector *v, void *data, gsl_vector *f)
|
760
|
-
{
|
761
|
-
gsl_vector *x, *y, *w;
|
762
|
-
double y0, A, x0, var, xi, yi, wi;
|
763
|
-
size_t i;
|
764
|
-
struct fitting_xydata *xydata;
|
765
|
-
xydata = (struct fitting_xydata*) data;
|
766
|
-
x = xydata->x;
|
767
|
-
y = xydata->y;
|
768
|
-
w = xydata->w;
|
769
|
-
var = gsl_vector_get(v, 3);
|
770
|
-
x0 = gsl_vector_get(v, 2);
|
771
|
-
A = gsl_vector_get(v, 1);
|
772
|
-
y0 = gsl_vector_get(v, 0);
|
773
|
-
for (i = 0; i < x->size; i++) {
|
774
|
-
xi = gsl_vector_get(x, i);
|
775
|
-
yi = gsl_vector_get(y, i);
|
776
|
-
if (w) wi = gsl_vector_get(w, i);
|
777
|
-
else wi = 1.0;
|
778
|
-
gsl_vector_set(f, i, (A*exp(-(xi - x0)*(xi - x0)/var/2.0) + y0 - yi)*wi);
|
779
|
-
}
|
780
|
-
return GSL_SUCCESS;
|
781
|
-
}
|
782
|
-
|
783
|
-
static int Gaussian_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
784
|
-
{
|
785
|
-
double A, x0, var, xi, yy, wi;
|
786
|
-
size_t i;
|
787
|
-
struct fitting_xydata *xydata;
|
788
|
-
gsl_vector *x, *w;
|
789
|
-
xydata = (struct fitting_xydata*) data;
|
790
|
-
x = xydata->x;
|
791
|
-
w = xydata->w;
|
792
|
-
var = gsl_vector_get(v, 3);
|
793
|
-
x0 = gsl_vector_get(v, 2);
|
794
|
-
A = gsl_vector_get(v, 1);
|
795
|
-
for (i = 0; i < x->size; i++) {
|
796
|
-
xi = gsl_vector_get(x, i);
|
797
|
-
if (w) wi = gsl_vector_get(w, i);
|
798
|
-
else wi = 1.0;
|
799
|
-
yy = exp(-(xi - x0)*(xi - x0)/var/2.0);
|
800
|
-
gsl_matrix_set(J, i, 3, A*yy*(xi - x0)*(xi - x0)/2/var/var*wi);
|
801
|
-
gsl_matrix_set(J, i, 2, A*yy*(xi - x0)/var*wi);
|
802
|
-
gsl_matrix_set(J, i, 1, yy*wi);
|
803
|
-
gsl_matrix_set(J, i, 0, 1.0*wi);
|
804
|
-
}
|
805
|
-
return GSL_SUCCESS;
|
806
|
-
}
|
807
|
-
|
808
|
-
static int Gaussian_fdf(const gsl_vector *v, void *data,
|
809
|
-
gsl_vector *f, gsl_matrix *J)
|
810
|
-
{
|
811
|
-
Gaussian_f(v, data, f);
|
812
|
-
Gaussian_df(v, data, J);
|
813
|
-
return GSL_SUCCESS;
|
814
|
-
}
|
815
|
-
|
816
|
-
/* 2 Gaussian fit
|
817
|
-
y = y0 + A1 exp(-(x-x01/sigma1)^2) + A2 exp(-(x-x02/sigma2)^2)
|
818
|
-
v[0] = y0
|
819
|
-
v[1] = A1
|
820
|
-
v[2] = x01
|
821
|
-
v[3] = var1 = sigma1^2
|
822
|
-
v[4] = A2
|
823
|
-
v[5] = x02
|
824
|
-
v[6] = var2 = sigma2^2
|
825
|
-
*/
|
826
|
-
static int Gaussian_2peaks_f(const gsl_vector *v, void *data, gsl_vector *f)
|
827
|
-
{
|
828
|
-
gsl_vector *x, *y, *w;
|
829
|
-
double y0, A1, x01, var1, A2, x02, var2, xi, yi, wi;
|
830
|
-
size_t i;
|
831
|
-
struct fitting_xydata *xydata;
|
832
|
-
xydata = (struct fitting_xydata*) data;
|
833
|
-
x = xydata->x;
|
834
|
-
y = xydata->y;
|
835
|
-
w = xydata->w;
|
836
|
-
y0 = gsl_vector_get(v, 0);
|
837
|
-
A1 = gsl_vector_get(v, 1);
|
838
|
-
x01 = gsl_vector_get(v, 2);
|
839
|
-
var1 = gsl_vector_get(v, 3);
|
840
|
-
A2 = gsl_vector_get(v, 4);
|
841
|
-
x02 = gsl_vector_get(v, 5);
|
842
|
-
var2 = gsl_vector_get(v, 6);
|
843
|
-
for (i = 0; i < x->size; i++) {
|
844
|
-
xi = gsl_vector_get(x, i);
|
845
|
-
yi = gsl_vector_get(y, i);
|
846
|
-
if (w) wi = gsl_vector_get(w, i);
|
847
|
-
else wi = 1.0;
|
848
|
-
gsl_vector_set(f, i, (A1*exp(-(xi - x01)*(xi - x01)/var1/2.0) + A2*exp(-(xi - x02)*(xi - x02)/var2/2.0) + y0 - yi)*wi);
|
849
|
-
}
|
850
|
-
return GSL_SUCCESS;
|
851
|
-
}
|
852
|
-
|
853
|
-
static int Gaussian_2peaks_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
854
|
-
{
|
855
|
-
double A1, x01, var1, A2, x02, var2, xi, yy, wi;
|
856
|
-
size_t i;
|
857
|
-
struct fitting_xydata *xydata;
|
858
|
-
gsl_vector *x, *w;
|
859
|
-
xydata = (struct fitting_xydata*) data;
|
860
|
-
x = xydata->x;
|
861
|
-
w = xydata->w;
|
862
|
-
A1 = gsl_vector_get(v, 1);
|
863
|
-
x01 = gsl_vector_get(v, 2);
|
864
|
-
var1 = gsl_vector_get(v, 3);
|
865
|
-
A2 = gsl_vector_get(v, 4);
|
866
|
-
x02 = gsl_vector_get(v, 5);
|
867
|
-
var2 = gsl_vector_get(v, 6);
|
868
|
-
for (i = 0; i < x->size; i++) {
|
869
|
-
xi = gsl_vector_get(x, i);
|
870
|
-
if (w) wi = gsl_vector_get(w, i);
|
871
|
-
else wi = 1.0;
|
872
|
-
yy = exp(-(xi - x01)*(xi - x01)/var1/2.0);
|
873
|
-
gsl_matrix_set(J, i, 0, 1.0*wi);
|
874
|
-
gsl_matrix_set(J, i, 1, yy*wi);
|
875
|
-
gsl_matrix_set(J, i, 2, A1*yy*(xi - x01)/var1*wi);
|
876
|
-
gsl_matrix_set(J, i, 3, A1*yy*(xi - x01)*(xi - x01)/2/var1/var1*wi);
|
877
|
-
|
878
|
-
yy = exp(-(xi - x02)*(xi - x02)/var2/2.0);
|
879
|
-
gsl_matrix_set(J, i, 4, yy*wi);
|
880
|
-
gsl_matrix_set(J, i, 5, A2*yy*(xi - x02)/var2*wi);
|
881
|
-
gsl_matrix_set(J, i, 6, A2*yy*(xi - x02)*(xi - x02)/2/var2/var2*wi);
|
882
|
-
}
|
883
|
-
return GSL_SUCCESS;
|
884
|
-
}
|
885
|
-
|
886
|
-
static int Gaussian_2peaks_fdf(const gsl_vector *v, void *data,
|
887
|
-
gsl_vector *f, gsl_matrix *J)
|
888
|
-
{
|
889
|
-
Gaussian_2peaks_f(v, data, f);
|
890
|
-
Gaussian_2peaks_df(v, data, J);
|
891
|
-
return GSL_SUCCESS;
|
892
|
-
}
|
893
|
-
|
894
|
-
/* Exponential fit
|
895
|
-
y = y0 + A exp(-bx)
|
896
|
-
v[0] = y0
|
897
|
-
v[1] = A
|
898
|
-
v[2] = b
|
899
|
-
*/
|
900
|
-
static int Exponential_f(const gsl_vector *v, void *data, gsl_vector *f)
|
901
|
-
{
|
902
|
-
gsl_vector *x, *y, *w;
|
903
|
-
double y0, A, b, xi, yi, wi;
|
904
|
-
size_t i;
|
905
|
-
struct fitting_xydata *xydata;
|
906
|
-
xydata = (struct fitting_xydata*) data;
|
907
|
-
x = xydata->x;
|
908
|
-
y = xydata->y;
|
909
|
-
w = xydata->w;
|
910
|
-
y0 = gsl_vector_get(v, 0);
|
911
|
-
A = gsl_vector_get(v, 1);
|
912
|
-
b = gsl_vector_get(v, 2);
|
913
|
-
for (i = 0; i < x->size; i++) {
|
914
|
-
xi = gsl_vector_get(x, i);
|
915
|
-
if (w) wi = gsl_vector_get(w, i);
|
916
|
-
else wi = 1.0;
|
917
|
-
yi = gsl_vector_get(y, i);
|
918
|
-
gsl_vector_set(f, i, (A*exp(-b*xi) + y0 - yi)*wi);
|
919
|
-
}
|
920
|
-
return GSL_SUCCESS;
|
921
|
-
}
|
922
|
-
|
923
|
-
static int Exponential_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
924
|
-
{
|
925
|
-
double A, b, xi, yy, wi;
|
926
|
-
size_t i;
|
927
|
-
struct fitting_xydata *xydata;
|
928
|
-
gsl_vector *x, *w;
|
929
|
-
xydata = (struct fitting_xydata*) data;
|
930
|
-
x = xydata->x;
|
931
|
-
w = xydata->w;
|
932
|
-
A = gsl_vector_get(v, 1);
|
933
|
-
b = gsl_vector_get(v, 2);
|
934
|
-
for (i = 0; i < x->size; i++) {
|
935
|
-
xi = gsl_vector_get(x, i);
|
936
|
-
if (w) wi = gsl_vector_get(w, i);
|
937
|
-
else wi = 1.0;
|
938
|
-
yy = exp(-xi*b);
|
939
|
-
gsl_matrix_set(J, i, 0, 1.0*wi);
|
940
|
-
gsl_matrix_set(J, i, 1, yy*wi);
|
941
|
-
gsl_matrix_set(J, i, 2, -A*yy*xi*wi);
|
942
|
-
}
|
943
|
-
return GSL_SUCCESS;
|
944
|
-
}
|
945
|
-
|
946
|
-
static int Exponential_fdf(const gsl_vector *v, void *data,
|
947
|
-
gsl_vector *f, gsl_matrix *J)
|
948
|
-
{
|
949
|
-
Exponential_f(v, data, f);
|
950
|
-
Exponential_df(v, data, J);
|
951
|
-
return GSL_SUCCESS;
|
952
|
-
}
|
953
|
-
|
954
|
-
|
955
|
-
/* Double Exponential fit
|
956
|
-
y = y0 + A1 exp(-b1 x) + A2 exp(-b2 x)
|
957
|
-
v[0] = y0
|
958
|
-
v[1] = A1
|
959
|
-
v[2] = b1
|
960
|
-
v[3] = A2
|
961
|
-
v[4] = b2
|
962
|
-
*/
|
963
|
-
static int DblExponential_f(const gsl_vector *v, void *data, gsl_vector *f)
|
964
|
-
{
|
965
|
-
gsl_vector *x, *y, *w;
|
966
|
-
double y0, A1, b1, A2, b2, xi, yi, wi;
|
967
|
-
size_t i;
|
968
|
-
struct fitting_xydata *xydata;
|
969
|
-
xydata = (struct fitting_xydata*) data;
|
970
|
-
x = xydata->x;
|
971
|
-
y = xydata->y;
|
972
|
-
w = xydata->w;
|
973
|
-
y0 = gsl_vector_get(v, 0);
|
974
|
-
A1 = gsl_vector_get(v, 1);
|
975
|
-
b1 = gsl_vector_get(v, 2);
|
976
|
-
A2 = gsl_vector_get(v, 3);
|
977
|
-
b2 = gsl_vector_get(v, 4);
|
978
|
-
for (i = 0; i < x->size; i++) {
|
979
|
-
xi = gsl_vector_get(x, i);
|
980
|
-
if (w) wi = gsl_vector_get(w, i);
|
981
|
-
else wi = 1.0;
|
982
|
-
yi = gsl_vector_get(y, i);
|
983
|
-
gsl_vector_set(f, i, (A1*exp(-b1*xi) + A2*exp(-b2*xi) + y0 - yi)*wi);
|
984
|
-
}
|
985
|
-
return GSL_SUCCESS;
|
986
|
-
}
|
987
|
-
|
988
|
-
static int DblExponential_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
989
|
-
{
|
990
|
-
double A1, b1, A2, b2, xi, yy1, yy2, wi;
|
991
|
-
size_t i;
|
992
|
-
struct fitting_xydata *xydata;
|
993
|
-
gsl_vector *x, *w;
|
994
|
-
xydata = (struct fitting_xydata*) data;
|
995
|
-
x = xydata->x;
|
996
|
-
w = xydata->w;
|
997
|
-
A1 = gsl_vector_get(v, 1);
|
998
|
-
b1 = gsl_vector_get(v, 2);
|
999
|
-
A2 = gsl_vector_get(v, 3);
|
1000
|
-
b2 = gsl_vector_get(v, 4);
|
1001
|
-
for (i = 0; i < x->size; i++) {
|
1002
|
-
xi = gsl_vector_get(x, i);
|
1003
|
-
if (w) wi = gsl_vector_get(w, i);
|
1004
|
-
else wi = 1.0;
|
1005
|
-
yy1 = exp(-xi*b1);
|
1006
|
-
yy2 = exp(-xi*b2);
|
1007
|
-
gsl_matrix_set(J, i, 0, 1.0*wi);
|
1008
|
-
gsl_matrix_set(J, i, 1, yy1*wi);
|
1009
|
-
gsl_matrix_set(J, i, 2, -A1*yy1*xi*wi);
|
1010
|
-
gsl_matrix_set(J, i, 3, yy2*wi);
|
1011
|
-
gsl_matrix_set(J, i, 4, -A2*yy2*xi*wi);
|
1012
|
-
}
|
1013
|
-
return GSL_SUCCESS;
|
1014
|
-
}
|
1015
|
-
|
1016
|
-
static int DblExponential_fdf(const gsl_vector *v, void *data,
|
1017
|
-
gsl_vector *f, gsl_matrix *J)
|
1018
|
-
{
|
1019
|
-
DblExponential_f(v, data, f);
|
1020
|
-
DblExponential_df(v, data, J);
|
1021
|
-
return GSL_SUCCESS;
|
1022
|
-
}
|
1023
|
-
|
1024
|
-
/* Lorentzian fit
|
1025
|
-
y = y0 + A/((x-x0)^2 + B)
|
1026
|
-
v[0] = y0
|
1027
|
-
v[1] = A
|
1028
|
-
v[2] = x0
|
1029
|
-
v[3] = B
|
1030
|
-
*/
|
1031
|
-
static int Lorentzian_f(const gsl_vector *v, void *data, gsl_vector *f)
|
1032
|
-
{
|
1033
|
-
gsl_vector *x, *y, *w;
|
1034
|
-
double y0, A, x0, B, xi, yi, wi;
|
1035
|
-
size_t i;
|
1036
|
-
struct fitting_xydata *xydata;
|
1037
|
-
xydata = (struct fitting_xydata*) data;
|
1038
|
-
x = xydata->x;
|
1039
|
-
y = xydata->y;
|
1040
|
-
w = xydata->w;
|
1041
|
-
y0 = gsl_vector_get(v, 0);
|
1042
|
-
A = gsl_vector_get(v, 1);
|
1043
|
-
x0 = gsl_vector_get(v, 2);
|
1044
|
-
B = gsl_vector_get(v, 3);
|
1045
|
-
for (i = 0; i < x->size; i++) {
|
1046
|
-
xi = gsl_vector_get(x, i);
|
1047
|
-
if (w) wi = gsl_vector_get(w, i);
|
1048
|
-
else wi = 1.0;
|
1049
|
-
yi = gsl_vector_get(y, i);
|
1050
|
-
gsl_vector_set(f, i, (A/(gsl_pow_2(xi-x0)+B) + y0 - yi)*wi);
|
1051
|
-
}
|
1052
|
-
return GSL_SUCCESS;
|
1053
|
-
}
|
1054
|
-
|
1055
|
-
static int Lorentzian_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
1056
|
-
{
|
1057
|
-
double A, B, x0, xi, yy, wi;
|
1058
|
-
size_t i;
|
1059
|
-
struct fitting_xydata *xydata;
|
1060
|
-
gsl_vector *x, *w;
|
1061
|
-
xydata = (struct fitting_xydata*) data;
|
1062
|
-
x = xydata->x;
|
1063
|
-
w = xydata->w;
|
1064
|
-
A = gsl_vector_get(v, 1);
|
1065
|
-
x0 = gsl_vector_get(v, 2);
|
1066
|
-
B = gsl_vector_get(v, 3);
|
1067
|
-
for (i = 0; i < x->size; i++) {
|
1068
|
-
xi = gsl_vector_get(x, i);
|
1069
|
-
if (w) wi = gsl_vector_get(w, i);
|
1070
|
-
else wi = 1.0;
|
1071
|
-
yy = gsl_pow_2(xi-x0)+B;
|
1072
|
-
gsl_matrix_set(J, i, 0, 1.0*wi);
|
1073
|
-
gsl_matrix_set(J, i, 1, 1.0/yy*wi);
|
1074
|
-
gsl_matrix_set(J, i, 2, 2.0*A*(xi-x0)/yy/yy*wi);
|
1075
|
-
gsl_matrix_set(J, i, 3, -A/yy/yy*wi);
|
1076
|
-
}
|
1077
|
-
return GSL_SUCCESS;
|
1078
|
-
}
|
1079
|
-
|
1080
|
-
static int Lorentzian_fdf(const gsl_vector *v, void *data,
|
1081
|
-
gsl_vector *f, gsl_matrix *J)
|
1082
|
-
{
|
1083
|
-
Lorentzian_f(v, data, f);
|
1084
|
-
Lorentzian_df(v, data, J);
|
1085
|
-
return GSL_SUCCESS;
|
1086
|
-
}
|
1087
|
-
|
1088
|
-
/* Sinusoldal fit
|
1089
|
-
y = y0 + A sin(fc x + phi)
|
1090
|
-
v[0] = y0
|
1091
|
-
v[1] = A
|
1092
|
-
v[2] = fc
|
1093
|
-
v[3] = phi
|
1094
|
-
*/
|
1095
|
-
static int Sin_f(const gsl_vector *v, void *data, gsl_vector *f)
|
1096
|
-
{
|
1097
|
-
gsl_vector *x, *y, *w;
|
1098
|
-
double y0, A, fc, phi, xi, yi, wi;
|
1099
|
-
size_t i;
|
1100
|
-
struct fitting_xydata *xydata;
|
1101
|
-
xydata = (struct fitting_xydata*) data;
|
1102
|
-
x = xydata->x;
|
1103
|
-
y = xydata->y;
|
1104
|
-
w = xydata->w;
|
1105
|
-
y0 = gsl_vector_get(v, 0);
|
1106
|
-
A = gsl_vector_get(v, 1);
|
1107
|
-
fc = gsl_vector_get(v, 2);
|
1108
|
-
phi = gsl_vector_get(v, 3);
|
1109
|
-
for (i = 0; i < x->size; i++) {
|
1110
|
-
xi = gsl_vector_get(x, i);
|
1111
|
-
if (w) wi = gsl_vector_get(w, i);
|
1112
|
-
else wi = 1.0;
|
1113
|
-
yi = gsl_vector_get(y, i);
|
1114
|
-
gsl_vector_set(f, i, (A*sin(fc*xi+phi) + y0 - yi)*wi);
|
1115
|
-
}
|
1116
|
-
return GSL_SUCCESS;
|
1117
|
-
}
|
1118
|
-
|
1119
|
-
static int Sin_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
1120
|
-
{
|
1121
|
-
double A, fc, phi, xi, ys, yc, wi;
|
1122
|
-
size_t i;
|
1123
|
-
struct fitting_xydata *xydata;
|
1124
|
-
gsl_vector *x, *w;
|
1125
|
-
xydata = (struct fitting_xydata*) data;
|
1126
|
-
x = xydata->x;
|
1127
|
-
w = xydata->w;
|
1128
|
-
A = gsl_vector_get(v, 1);
|
1129
|
-
fc = gsl_vector_get(v, 2);
|
1130
|
-
phi = gsl_vector_get(v, 3);
|
1131
|
-
for (i = 0; i < x->size; i++) {
|
1132
|
-
xi = gsl_vector_get(x, i);
|
1133
|
-
if (w) wi = gsl_vector_get(w, i);
|
1134
|
-
else wi = 1.0;
|
1135
|
-
ys = sin(fc*xi + phi);
|
1136
|
-
yc = cos(fc*xi + phi);
|
1137
|
-
gsl_matrix_set(J, i, 0, 1.0*wi);
|
1138
|
-
gsl_matrix_set(J, i, 1, ys*wi);
|
1139
|
-
gsl_matrix_set(J, i, 2, A*yc*xi*wi);
|
1140
|
-
gsl_matrix_set(J, i, 3, A*yc*wi);
|
1141
|
-
}
|
1142
|
-
return GSL_SUCCESS;
|
1143
|
-
}
|
1144
|
-
|
1145
|
-
static int Sin_fdf(const gsl_vector *v, void *data,
|
1146
|
-
gsl_vector *f, gsl_matrix *J)
|
1147
|
-
{
|
1148
|
-
Sin_f(v, data, f);
|
1149
|
-
Sin_df(v, data, J);
|
1150
|
-
return GSL_SUCCESS;
|
1151
|
-
}
|
1152
|
-
|
1153
|
-
/* Hill's equation fit
|
1154
|
-
y = y0 + (m - y0)/(1 + (xhalf/x)^r)
|
1155
|
-
v[0] = y0
|
1156
|
-
v[1] = m
|
1157
|
-
v[2] = xhalf
|
1158
|
-
v[3] = r
|
1159
|
-
*/
|
1160
|
-
static int Hill_f(const gsl_vector *v, void *data, gsl_vector *f)
|
1161
|
-
{
|
1162
|
-
gsl_vector *x, *y, *w;
|
1163
|
-
double y0, m, xhalf, r, xi, yi, wi;
|
1164
|
-
size_t i;
|
1165
|
-
struct fitting_xydata *xydata;
|
1166
|
-
xydata = (struct fitting_xydata*) data;
|
1167
|
-
x = xydata->x;
|
1168
|
-
y = xydata->y;
|
1169
|
-
w = xydata->w;
|
1170
|
-
y0 = gsl_vector_get(v, 0);
|
1171
|
-
m = gsl_vector_get(v, 1);
|
1172
|
-
xhalf = gsl_vector_get(v, 2);
|
1173
|
-
r = gsl_vector_get(v, 3);
|
1174
|
-
for (i = 0; i < x->size; i++) {
|
1175
|
-
xi = gsl_vector_get(x, i);
|
1176
|
-
if (w) wi = gsl_vector_get(w, i);
|
1177
|
-
else wi = 1.0;
|
1178
|
-
yi = gsl_vector_get(y, i);
|
1179
|
-
gsl_vector_set(f, i, ((m-y0)/(1.0+pow(xhalf/xi, r)) + y0 - yi)*wi);
|
1180
|
-
}
|
1181
|
-
return GSL_SUCCESS;
|
1182
|
-
}
|
1183
|
-
|
1184
|
-
static int Hill_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
1185
|
-
{
|
1186
|
-
double y0, m, xhalf, r, yy, xi, wi, a;
|
1187
|
-
size_t i;
|
1188
|
-
struct fitting_xydata *xydata;
|
1189
|
-
gsl_vector *x, *w;
|
1190
|
-
xydata = (struct fitting_xydata*) data;
|
1191
|
-
x = xydata->x;
|
1192
|
-
w = xydata->w;
|
1193
|
-
y0 = gsl_vector_get(v, 0);
|
1194
|
-
m = gsl_vector_get(v, 1);
|
1195
|
-
xhalf = gsl_vector_get(v, 2);
|
1196
|
-
r = gsl_vector_get(v, 3);
|
1197
|
-
for (i = 0; i < x->size; i++) {
|
1198
|
-
xi = gsl_vector_get(x, i);
|
1199
|
-
if (w) wi = gsl_vector_get(w, i);
|
1200
|
-
else wi = 1.0;
|
1201
|
-
a = pow(xhalf/xi, r);
|
1202
|
-
yy = (1.0 + a);
|
1203
|
-
gsl_matrix_set(J, i, 0, (1.0 - 1.0/yy)*wi);
|
1204
|
-
gsl_matrix_set(J, i, 1, 1.0/yy*wi);
|
1205
|
-
gsl_matrix_set(J, i, 2, -(m-y0)*r/xhalf*a/yy/yy*wi);
|
1206
|
-
gsl_matrix_set(J, i, 3, -(m-y0)/yy/yy*a*log(xhalf/xi)*wi);
|
1207
|
-
}
|
1208
|
-
return GSL_SUCCESS;
|
1209
|
-
}
|
1210
|
-
|
1211
|
-
static int Hill_fdf(const gsl_vector *v, void *data,
|
1212
|
-
gsl_vector *f, gsl_matrix *J)
|
1213
|
-
{
|
1214
|
-
Hill_f(v, data, f);
|
1215
|
-
Hill_df(v, data, J);
|
1216
|
-
return GSL_SUCCESS;
|
1217
|
-
}
|
1218
|
-
|
1219
|
-
/* Sigmoidal fit
|
1220
|
-
y = y0 + m/(1 + exp((x0-x)/r))
|
1221
|
-
v[0] = y0
|
1222
|
-
v[1] = m
|
1223
|
-
v[2] = x0
|
1224
|
-
v[3] = r
|
1225
|
-
*/
|
1226
|
-
static int Sigmoid_f(const gsl_vector *v, void *data, gsl_vector *f)
|
1227
|
-
{
|
1228
|
-
gsl_vector *x, *y, *w;
|
1229
|
-
double y0, m, x0, r, xi, yi, wi;
|
1230
|
-
size_t i;
|
1231
|
-
struct fitting_xydata *xydata;
|
1232
|
-
xydata = (struct fitting_xydata*) data;
|
1233
|
-
x = xydata->x;
|
1234
|
-
y = xydata->y;
|
1235
|
-
w = xydata->w;
|
1236
|
-
y0 = gsl_vector_get(v, 0);
|
1237
|
-
m = gsl_vector_get(v, 1);
|
1238
|
-
x0 = gsl_vector_get(v, 2);
|
1239
|
-
r = gsl_vector_get(v, 3);
|
1240
|
-
for (i = 0; i < x->size; i++) {
|
1241
|
-
xi = gsl_vector_get(x, i);
|
1242
|
-
if (w) wi = gsl_vector_get(w, i);
|
1243
|
-
else wi = 1.0;
|
1244
|
-
yi = gsl_vector_get(y, i);
|
1245
|
-
gsl_vector_set(f, i, (m/(1.0+exp((x0-xi)/r)) + y0 - yi)*wi);
|
1246
|
-
}
|
1247
|
-
return GSL_SUCCESS;
|
1248
|
-
}
|
1249
|
-
|
1250
|
-
static int Sigmoid_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
1251
|
-
{
|
1252
|
-
double m, x0, r, xi, wi, a, yy;
|
1253
|
-
size_t i;
|
1254
|
-
struct fitting_xydata *xydata;
|
1255
|
-
gsl_vector *x, *w;
|
1256
|
-
xydata = (struct fitting_xydata*) data;
|
1257
|
-
x = xydata->x;
|
1258
|
-
w = xydata->w;
|
1259
|
-
m = gsl_vector_get(v, 1);
|
1260
|
-
x0 = gsl_vector_get(v, 2);
|
1261
|
-
r = gsl_vector_get(v, 3);
|
1262
|
-
for (i = 0; i < x->size; i++) {
|
1263
|
-
xi = gsl_vector_get(x, i);
|
1264
|
-
if (w) wi = gsl_vector_get(w, i);
|
1265
|
-
else wi = 1.0;
|
1266
|
-
a = exp((x0 - xi)/r);
|
1267
|
-
yy = 1.0 + a;
|
1268
|
-
gsl_matrix_set(J, i, 0, wi);
|
1269
|
-
gsl_matrix_set(J, i, 1, 1.0/yy*wi);
|
1270
|
-
gsl_matrix_set(J, i, 2, -m*a/r/yy/yy*wi);
|
1271
|
-
gsl_matrix_set(J, i, 3, m*a*(x0-xi)/r/r/yy/yy*wi);
|
1272
|
-
}
|
1273
|
-
return GSL_SUCCESS;
|
1274
|
-
}
|
1275
|
-
|
1276
|
-
static int Sigmoid_fdf(const gsl_vector *v, void *data,
|
1277
|
-
gsl_vector *f, gsl_matrix *J)
|
1278
|
-
{
|
1279
|
-
Sigmoid_f(v, data, f);
|
1280
|
-
Sigmoid_df(v, data, J);
|
1281
|
-
return GSL_SUCCESS;
|
1282
|
-
}
|
1283
|
-
|
1284
|
-
|
1285
|
-
/* Power-law fit
|
1286
|
-
y = y0 + A x^r
|
1287
|
-
v[0] = y0
|
1288
|
-
v[1] = A
|
1289
|
-
v[2] = r
|
1290
|
-
*/
|
1291
|
-
static int Power_f(const gsl_vector *v, void *data, gsl_vector *f)
|
1292
|
-
{
|
1293
|
-
gsl_vector *x, *y, *w;
|
1294
|
-
double y0, A, r, xi, yi, wi;
|
1295
|
-
size_t i;
|
1296
|
-
struct fitting_xydata *xydata;
|
1297
|
-
xydata = (struct fitting_xydata*) data;
|
1298
|
-
x = xydata->x;
|
1299
|
-
y = xydata->y;
|
1300
|
-
w = xydata->w;
|
1301
|
-
y0 = gsl_vector_get(v, 0);
|
1302
|
-
A = gsl_vector_get(v, 1);
|
1303
|
-
r = gsl_vector_get(v, 2);
|
1304
|
-
for (i = 0; i < x->size; i++) {
|
1305
|
-
xi = gsl_vector_get(x, i);
|
1306
|
-
if (w) wi = gsl_vector_get(w, i);
|
1307
|
-
else wi = 1.0;
|
1308
|
-
yi = gsl_vector_get(y, i);
|
1309
|
-
gsl_vector_set(f, i, (A*pow(xi, r) + y0 - yi)*wi);
|
1310
|
-
}
|
1311
|
-
return GSL_SUCCESS;
|
1312
|
-
}
|
1313
|
-
|
1314
|
-
static int Power_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
1315
|
-
{
|
1316
|
-
double A, r, xi, wi, a;
|
1317
|
-
size_t i;
|
1318
|
-
struct fitting_xydata *xydata;
|
1319
|
-
gsl_vector *x, *w;
|
1320
|
-
xydata = (struct fitting_xydata*) data;
|
1321
|
-
x = xydata->x;
|
1322
|
-
w = xydata->w;
|
1323
|
-
A = gsl_vector_get(v, 1);
|
1324
|
-
r = gsl_vector_get(v, 2);
|
1325
|
-
for (i = 0; i < x->size; i++) {
|
1326
|
-
xi = gsl_vector_get(x, i);
|
1327
|
-
if (w) wi = gsl_vector_get(w, i);
|
1328
|
-
else wi = 1.0;
|
1329
|
-
a = pow(xi, r);
|
1330
|
-
gsl_matrix_set(J, i, 0, wi);
|
1331
|
-
gsl_matrix_set(J, i, 1, a*wi);
|
1332
|
-
gsl_matrix_set(J, i, 2, A*a*log(xi)*wi);
|
1333
|
-
|
1334
|
-
}
|
1335
|
-
return GSL_SUCCESS;
|
1336
|
-
}
|
1337
|
-
|
1338
|
-
static int Power_fdf(const gsl_vector *v, void *data,
|
1339
|
-
gsl_vector *f, gsl_matrix *J)
|
1340
|
-
{
|
1341
|
-
Power_f(v, data, f);
|
1342
|
-
Power_df(v, data, J);
|
1343
|
-
return GSL_SUCCESS;
|
1344
|
-
}
|
1345
|
-
|
1346
|
-
|
1347
|
-
/* Lognormal fit
|
1348
|
-
y = y0 + A exp[ -(log(x/x0)/width)^2 ]
|
1349
|
-
v[0] = y0
|
1350
|
-
v[1] = A
|
1351
|
-
v[2] = x0
|
1352
|
-
v[3] = width
|
1353
|
-
*/
|
1354
|
-
static int Lognormal_f(const gsl_vector *v, void *data, gsl_vector *f)
|
1355
|
-
{
|
1356
|
-
gsl_vector *x, *y, *w;
|
1357
|
-
double y0, A, x0, width, xi, yi, wi;
|
1358
|
-
size_t i;
|
1359
|
-
struct fitting_xydata *xydata;
|
1360
|
-
xydata = (struct fitting_xydata*) data;
|
1361
|
-
x = xydata->x;
|
1362
|
-
y = xydata->y;
|
1363
|
-
w = xydata->w;
|
1364
|
-
y0 = gsl_vector_get(v, 0);
|
1365
|
-
A = gsl_vector_get(v, 1);
|
1366
|
-
x0 = gsl_vector_get(v, 2);
|
1367
|
-
width = gsl_vector_get(v, 3);
|
1368
|
-
for (i = 0; i < x->size; i++) {
|
1369
|
-
xi = gsl_vector_get(x, i);
|
1370
|
-
if (w) wi = gsl_vector_get(w, i);
|
1371
|
-
else wi = 1.0;
|
1372
|
-
yi = gsl_vector_get(y, i);
|
1373
|
-
gsl_vector_set(f, i, (A*exp(-gsl_pow_2(log(xi/x0)/width)) + y0 - yi)*wi);
|
1374
|
-
}
|
1375
|
-
return GSL_SUCCESS;
|
1376
|
-
}
|
1377
|
-
|
1378
|
-
static int Lognormal_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
1379
|
-
{
|
1380
|
-
double A, x0, width, xi, wi, a, b;
|
1381
|
-
size_t i;
|
1382
|
-
struct fitting_xydata *xydata;
|
1383
|
-
gsl_vector *x, *w;
|
1384
|
-
xydata = (struct fitting_xydata*) data;
|
1385
|
-
x = xydata->x;
|
1386
|
-
w = xydata->w;
|
1387
|
-
A = gsl_vector_get(v, 1);
|
1388
|
-
x0 = gsl_vector_get(v, 2);
|
1389
|
-
width = gsl_vector_get(v, 3);
|
1390
|
-
for (i = 0; i < x->size; i++) {
|
1391
|
-
xi = gsl_vector_get(x, i);
|
1392
|
-
if (w) wi = gsl_vector_get(w, i);
|
1393
|
-
else wi = 1.0;
|
1394
|
-
a = log(xi/x0)/width;
|
1395
|
-
b = exp(-a*a);
|
1396
|
-
gsl_matrix_set(J, i, 0, wi);
|
1397
|
-
gsl_matrix_set(J, i, 1, b*wi);
|
1398
|
-
gsl_matrix_set(J, i, 2, 2.0*A*b*a*a*a/width/x0*wi);
|
1399
|
-
gsl_matrix_set(J, i, 3, 2.0*A*b*a*a*a*a/width*wi);
|
1400
|
-
}
|
1401
|
-
return GSL_SUCCESS;
|
1402
|
-
}
|
1403
|
-
|
1404
|
-
static int Lognormal_fdf(const gsl_vector *v, void *data,
|
1405
|
-
gsl_vector *f, gsl_matrix *J)
|
1406
|
-
{
|
1407
|
-
Lognormal_f(v, data, f);
|
1408
|
-
Lognormal_df(v, data, J);
|
1409
|
-
return GSL_SUCCESS;
|
1410
|
-
}
|
1411
|
-
|
1412
|
-
/* Rayleigh fit
|
1413
|
-
y = A exp(-x*x/2/var)
|
1414
|
-
v[0] = A
|
1415
|
-
v[1] = var = sigma^2
|
1416
|
-
*/
|
1417
|
-
static int Rayleigh_f(const gsl_vector *v, void *data, gsl_vector *f)
|
1418
|
-
{
|
1419
|
-
gsl_vector *x, *y, *w;
|
1420
|
-
double A, var, xi, yi, wi;
|
1421
|
-
size_t i;
|
1422
|
-
struct fitting_xydata *xydata;
|
1423
|
-
xydata = (struct fitting_xydata*) data;
|
1424
|
-
x = xydata->x;
|
1425
|
-
y = xydata->y;
|
1426
|
-
w = xydata->w;
|
1427
|
-
var = gsl_vector_get(v, 1);
|
1428
|
-
A = gsl_vector_get(v, 0);
|
1429
|
-
for (i = 0; i < x->size; i++) {
|
1430
|
-
xi = gsl_vector_get(x, i);
|
1431
|
-
yi = gsl_vector_get(y, i);
|
1432
|
-
if (w) wi = gsl_vector_get(w, i);
|
1433
|
-
else wi = 1.0;
|
1434
|
-
gsl_vector_set(f, i, (A*xi*exp(-xi*xi/var/2.0) - yi)*wi);
|
1435
|
-
}
|
1436
|
-
return GSL_SUCCESS;
|
1437
|
-
}
|
1438
|
-
|
1439
|
-
static int Rayleigh_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
1440
|
-
{
|
1441
|
-
double A, var, xi, yy, wi;
|
1442
|
-
size_t i;
|
1443
|
-
struct fitting_xydata *xydata;
|
1444
|
-
gsl_vector *x, *w;
|
1445
|
-
xydata = (struct fitting_xydata*) data;
|
1446
|
-
x = xydata->x;
|
1447
|
-
w = xydata->w;
|
1448
|
-
var = gsl_vector_get(v, 1);
|
1449
|
-
A = gsl_vector_get(v, 0);
|
1450
|
-
for (i = 0; i < x->size; i++) {
|
1451
|
-
xi = gsl_vector_get(x, i);
|
1452
|
-
if (w) wi = gsl_vector_get(w, i);
|
1453
|
-
else wi = 1.0;
|
1454
|
-
yy = xi*exp(-xi*xi/var/2.0);
|
1455
|
-
gsl_matrix_set(J, i, 1, A*yy*xi*xi/2/var/var*wi);
|
1456
|
-
gsl_matrix_set(J, i, 0, yy*wi);
|
1457
|
-
}
|
1458
|
-
return GSL_SUCCESS;
|
1459
|
-
}
|
1460
|
-
|
1461
|
-
static int Rayleigh_fdf(const gsl_vector *v, void *data,
|
1462
|
-
gsl_vector *f, gsl_matrix *J)
|
1463
|
-
{
|
1464
|
-
Rayleigh_f(v, data, f);
|
1465
|
-
Rayleigh_df(v, data, J);
|
1466
|
-
return GSL_SUCCESS;
|
1467
|
-
}
|
1468
|
-
|
1469
|
-
static void set_fittype(gsl_multifit_function_fdf *f, const char *fittype, size_t *p, gsl_vector **v, int *flag)
|
1470
|
-
{
|
1471
|
-
if (str_tail_grep(fittype, "aussian_2peaks") == 0) {
|
1472
|
-
f->f = Gaussian_2peaks_f;
|
1473
|
-
f->df = Gaussian_2peaks_df;
|
1474
|
-
f->fdf = Gaussian_2peaks_fdf;
|
1475
|
-
*p = 7;
|
1476
|
-
if (*v == NULL) {
|
1477
|
-
*v = gsl_vector_alloc(*p);
|
1478
|
-
gsl_vector_set(*v, 0, 0); /* y0 = 0 */
|
1479
|
-
gsl_vector_set(*v, 1, 1); /* A = 1 */
|
1480
|
-
gsl_vector_set(*v, 2, 0.0); /* x0 = 0 */
|
1481
|
-
gsl_vector_set(*v, 3, 1); /* initial values, var = 1 */
|
1482
|
-
gsl_vector_set(*v, 4, 1); /* A = 1 */
|
1483
|
-
gsl_vector_set(*v, 5, 1.0); /* x0 = 1 */
|
1484
|
-
gsl_vector_set(*v, 6, 1); /* initial values, var = 1 */
|
1485
|
-
*flag = 1;
|
1486
|
-
}
|
1487
|
-
} else if (str_head_grep(fittype, "gaus") == 0) {
|
1488
|
-
f->f = Gaussian_f;
|
1489
|
-
f->df = Gaussian_df;
|
1490
|
-
f->fdf = Gaussian_fdf;
|
1491
|
-
*p = 4;
|
1492
|
-
if (*v == NULL) {
|
1493
|
-
*v = gsl_vector_alloc(*p);
|
1494
|
-
gsl_vector_set(*v, 3, 1); /* initial values, var = 1 */
|
1495
|
-
gsl_vector_set(*v, 2, 0.0); /* x0 = 0 */
|
1496
|
-
gsl_vector_set(*v, 1, 1); /* A = 1 */
|
1497
|
-
gsl_vector_set(*v, 0, 0); /* y0 = 0 */
|
1498
|
-
*flag = 1;
|
1499
|
-
}
|
1500
|
-
} else if (str_head_grep(fittype, "exp") == 0) {
|
1501
|
-
f->f = Exponential_f;
|
1502
|
-
f->df = Exponential_df;
|
1503
|
-
f->fdf = Exponential_fdf;
|
1504
|
-
*p = 3;
|
1505
|
-
if (*v == NULL) {
|
1506
|
-
*v = gsl_vector_alloc(*p);
|
1507
|
-
gsl_vector_set(*v, 0, 0); /* y0 = 0 */
|
1508
|
-
gsl_vector_set(*v, 1, 1); /* A = 1 */
|
1509
|
-
gsl_vector_set(*v, 2, 1);
|
1510
|
-
*flag = 1;
|
1511
|
-
}
|
1512
|
-
} else if (str_head_grep(fittype, "rayleigh") == 0) {
|
1513
|
-
f->f = Rayleigh_f;
|
1514
|
-
f->df = Rayleigh_df;
|
1515
|
-
f->fdf = Rayleigh_fdf;
|
1516
|
-
*p = 2;
|
1517
|
-
if (*v == NULL) {
|
1518
|
-
*v = gsl_vector_alloc(*p);
|
1519
|
-
gsl_vector_set(*v, 0, 1); /* A = 1 */
|
1520
|
-
gsl_vector_set(*v, 1, 1); /* sigma = 1 */
|
1521
|
-
*flag = 1;
|
1522
|
-
}
|
1523
|
-
} else if (str_head_grep(fittype, "dblexp") == 0) {
|
1524
|
-
f->f = DblExponential_f;
|
1525
|
-
f->df = DblExponential_df;
|
1526
|
-
f->fdf = DblExponential_fdf;
|
1527
|
-
*p = 5;
|
1528
|
-
if (*v == NULL) {
|
1529
|
-
*v = gsl_vector_alloc(*p);
|
1530
|
-
gsl_vector_set(*v, 0, 0); /* y0 = 0 */
|
1531
|
-
gsl_vector_set(*v, 1, 1); /* A = 1 */
|
1532
|
-
gsl_vector_set(*v, 2, 1);
|
1533
|
-
gsl_vector_set(*v, 3, 1); /* A = 1 */
|
1534
|
-
gsl_vector_set(*v, 4, 1);
|
1535
|
-
*flag = 1;
|
1536
|
-
}
|
1537
|
-
} else if (str_head_grep(fittype, "lor") == 0) {
|
1538
|
-
f->f = Lorentzian_f;
|
1539
|
-
f->df = Lorentzian_df;
|
1540
|
-
f->fdf = Lorentzian_fdf;
|
1541
|
-
*p = 4;
|
1542
|
-
if (*v == NULL) {
|
1543
|
-
*v = gsl_vector_alloc(*p);
|
1544
|
-
gsl_vector_set(*v, 0, 0);
|
1545
|
-
gsl_vector_set(*v, 1, 1);
|
1546
|
-
gsl_vector_set(*v, 2, 0);
|
1547
|
-
gsl_vector_set(*v, 3, 1);
|
1548
|
-
*flag = 1;
|
1549
|
-
}
|
1550
|
-
} else if (str_head_grep(fittype, "sin") == 0) {
|
1551
|
-
f->f = Sin_f;
|
1552
|
-
f->df = Sin_df;
|
1553
|
-
f->fdf = Sin_fdf;
|
1554
|
-
*p = 4;
|
1555
|
-
if (*v == NULL) {
|
1556
|
-
*v = gsl_vector_alloc(*p);
|
1557
|
-
gsl_vector_set(*v, 0, 0);
|
1558
|
-
gsl_vector_set(*v, 1, 1);
|
1559
|
-
gsl_vector_set(*v, 2, 1);
|
1560
|
-
gsl_vector_set(*v, 3, 0);
|
1561
|
-
*flag = 1;
|
1562
|
-
}
|
1563
|
-
} else if (str_head_grep(fittype, "hill") == 0) {
|
1564
|
-
f->f = Hill_f;
|
1565
|
-
f->df = Hill_df;
|
1566
|
-
f->fdf = Hill_fdf;
|
1567
|
-
*p = 4;
|
1568
|
-
if (*v == NULL) {
|
1569
|
-
*v = gsl_vector_alloc(*p);
|
1570
|
-
gsl_vector_set(*v, 0, 0);
|
1571
|
-
gsl_vector_set(*v, 1, 1);
|
1572
|
-
gsl_vector_set(*v, 2, 1);
|
1573
|
-
gsl_vector_set(*v, 3, 1);
|
1574
|
-
*flag = 1;
|
1575
|
-
}
|
1576
|
-
} else if (str_head_grep(fittype, "sigmoid") == 0 || str_head_grep(fittype, "fermi") == 0) {
|
1577
|
-
f->f = Sigmoid_f;
|
1578
|
-
f->df = Sigmoid_df;
|
1579
|
-
f->fdf = Sigmoid_fdf;
|
1580
|
-
*p = 4;
|
1581
|
-
if (*v == NULL) {
|
1582
|
-
*v = gsl_vector_alloc(*p);
|
1583
|
-
gsl_vector_set(*v, 0, 0);
|
1584
|
-
gsl_vector_set(*v, 1, 1);
|
1585
|
-
gsl_vector_set(*v, 2, 0);
|
1586
|
-
gsl_vector_set(*v, 3, 1);
|
1587
|
-
*flag = 1;
|
1588
|
-
}
|
1589
|
-
} else if (str_head_grep(fittype, "power") == 0) {
|
1590
|
-
f->f = Power_f;
|
1591
|
-
f->df = Power_df;
|
1592
|
-
f->fdf = Power_fdf;
|
1593
|
-
*p = 3;
|
1594
|
-
if (*v == NULL) {
|
1595
|
-
*v = gsl_vector_alloc(*p);
|
1596
|
-
gsl_vector_set(*v, 0, 0);
|
1597
|
-
gsl_vector_set(*v, 1, 1);
|
1598
|
-
gsl_vector_set(*v, 2, -1);
|
1599
|
-
*flag = 1;
|
1600
|
-
}
|
1601
|
-
} else if (str_head_grep(fittype, "lognormal") == 0) {
|
1602
|
-
f->f = Lognormal_f;
|
1603
|
-
f->df = Lognormal_df;
|
1604
|
-
f->fdf = Lognormal_fdf;
|
1605
|
-
*p = 4;
|
1606
|
-
if (*v == NULL) {
|
1607
|
-
*v = gsl_vector_alloc(*p);
|
1608
|
-
gsl_vector_set(*v, 0, 0);
|
1609
|
-
gsl_vector_set(*v, 1, 1);
|
1610
|
-
gsl_vector_set(*v, 2, 1);
|
1611
|
-
gsl_vector_set(*v, 3, 1);
|
1612
|
-
*flag = 1;
|
1613
|
-
}
|
1614
|
-
} else {
|
1615
|
-
rb_raise(rb_eRuntimeError, "Unknown fit type (gaussian expected)");
|
1616
|
-
}
|
1617
|
-
}
|
1618
|
-
|
1619
|
-
/* Singleton method */
|
1620
|
-
static VALUE rb_gsl_multifit_fit(int argc, VALUE *argv, VALUE klass)
|
1621
|
-
{
|
1622
|
-
const gsl_multifit_fdfsolver_type *T;
|
1623
|
-
gsl_multifit_fdfsolver *solver;
|
1624
|
-
int status;
|
1625
|
-
size_t iter = 0, i;
|
1626
|
-
size_t n, dof; /* # of data points */
|
1627
|
-
size_t p; /* # of fitting parameters */
|
1628
|
-
gsl_multifit_function_fdf f;
|
1629
|
-
gsl_matrix *covar = NULL;
|
1630
|
-
gsl_vector *v = NULL;
|
1631
|
-
gsl_vector *x, *y, *w = NULL;
|
1632
|
-
gsl_vector_view xx, yy, ww;
|
1633
|
-
gsl_vector *vout, *verr;
|
1634
|
-
int flag = 0;
|
1635
|
-
double chi2;
|
1636
|
-
char fittype[256];
|
1637
|
-
struct fitting_xydata xydata;
|
1638
|
-
if (argc < 3) rb_raise(rb_eArgError, "too few arguments");
|
1639
|
-
switch (TYPE(argv[argc-1])) {
|
1640
|
-
case T_ARRAY:
|
1641
|
-
v = get_vector(argv[argc-1]);
|
1642
|
-
flag = 1;
|
1643
|
-
argc--;
|
1644
|
-
break;
|
1645
|
-
case T_STRING:
|
1646
|
-
/* do nothing */
|
1647
|
-
break;
|
1648
|
-
default:
|
1649
|
-
Data_Get_Vector(argv[argc-1], v);
|
1650
|
-
flag = 0;
|
1651
|
-
argc--;
|
1652
|
-
break;
|
1653
|
-
}
|
1654
|
-
x = &xx.vector;
|
1655
|
-
y = &yy.vector;
|
1656
|
-
w = &ww.vector;
|
1657
|
-
switch (argc) {
|
1658
|
-
case 3:
|
1659
|
-
Data_Get_Vector(argv[0], x);
|
1660
|
-
Data_Get_Vector(argv[1], y);
|
1661
|
-
w = NULL;
|
1662
|
-
strcpy(fittype, STR2CSTR(argv[2]));
|
1663
|
-
break;
|
1664
|
-
case 4:
|
1665
|
-
Data_Get_Vector(argv[0], x);
|
1666
|
-
Data_Get_Vector(argv[1], w);
|
1667
|
-
Data_Get_Vector(argv[2], y);
|
1668
|
-
strcpy(fittype, STR2CSTR(argv[3]));
|
1669
|
-
break;
|
1670
|
-
default:
|
1671
|
-
rb_raise(rb_eArgError, "wrong number of arguments");
|
1672
|
-
break;
|
1673
|
-
}
|
1674
|
-
|
1675
|
-
xydata.x = x;
|
1676
|
-
xydata.y = y;
|
1677
|
-
xydata.w = w;
|
1678
|
-
n = x->size;
|
1679
|
-
|
1680
|
-
set_fittype(&f, fittype, &p, &v, &flag);
|
1681
|
-
|
1682
|
-
f.n = n;
|
1683
|
-
f.p = p;
|
1684
|
-
f.params = &xydata;
|
1685
|
-
|
1686
|
-
T = gsl_multifit_fdfsolver_lmsder;
|
1687
|
-
solver = gsl_multifit_fdfsolver_alloc(T, n, p);
|
1688
|
-
gsl_multifit_fdfsolver_set(solver, &f, v);
|
1689
|
-
|
1690
|
-
do {
|
1691
|
-
iter++;
|
1692
|
-
status = gsl_multifit_fdfsolver_iterate(solver);
|
1693
|
-
if (status) break;
|
1694
|
-
status = gsl_multifit_test_delta(solver->dx, solver->x, 1e-6, 1e-6);
|
1695
|
-
} while (status == GSL_CONTINUE);
|
1696
|
-
vout = gsl_vector_alloc(p);
|
1697
|
-
verr = gsl_vector_alloc(p);
|
1698
|
-
gsl_vector_memcpy(vout, solver->x);
|
1699
|
-
covar = gsl_matrix_alloc(p, p);
|
1700
|
-
chi2 = gsl_pow_2(gsl_blas_dnrm2(solver->f)); /* not reduced chi-square */
|
1701
|
-
dof = n - p;
|
1702
|
-
gsl_multifit_covar(solver->J, 0.0, covar);
|
1703
|
-
for (i = 0; i < p; i++)
|
1704
|
-
gsl_vector_set(verr, i, sqrt(chi2/dof*gsl_matrix_get(covar, i, i)));
|
1705
|
-
gsl_matrix_free(covar);
|
1706
|
-
if (flag == 1) gsl_vector_free(v);
|
1707
|
-
gsl_multifit_fdfsolver_free(solver);
|
1708
|
-
return rb_ary_new3(4,
|
1709
|
-
Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free, vout),
|
1710
|
-
Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free, verr),
|
1711
|
-
rb_float_new(chi2), INT2FIX(dof));
|
1712
|
-
}
|
1713
|
-
|
1714
|
-
static VALUE rb_gsl_multifit_linear_est(VALUE module, VALUE xx, VALUE cc, VALUE ccov)
|
1715
|
-
{
|
1716
|
-
gsl_vector *x, *c;
|
1717
|
-
gsl_matrix *cov;
|
1718
|
-
double y, y_err;
|
1719
|
-
|
1720
|
-
Data_Get_Vector(xx, x);
|
1721
|
-
Data_Get_Vector(cc, c);
|
1722
|
-
Data_Get_Matrix(ccov, cov);
|
1723
|
-
gsl_multifit_linear_est(x, c, cov, &y, &y_err);
|
1724
|
-
return rb_ary_new3(2, rb_float_new(y), rb_float_new(y_err));
|
1725
|
-
}
|
1726
|
-
|
1727
|
-
static VALUE rb_gsl_multifit_linear_residuals(int argc, VALUE argv[], VALUE module)
|
1728
|
-
{
|
1729
|
-
gsl_vector *y, *c, *r;
|
1730
|
-
gsl_matrix *X;
|
1731
|
-
VALUE ret;
|
1732
|
-
switch (argc) {
|
1733
|
-
case 3:
|
1734
|
-
Data_Get_Matrix(argv[0], X);
|
1735
|
-
Data_Get_Vector(argv[1], y);
|
1736
|
-
Data_Get_Vector(argv[2], c);
|
1737
|
-
r = gsl_vector_alloc(y->size);
|
1738
|
-
ret = Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free, r);
|
1739
|
-
break;
|
1740
|
-
case 4:
|
1741
|
-
Data_Get_Matrix(argv[0], X);
|
1742
|
-
Data_Get_Vector(argv[1], y);
|
1743
|
-
Data_Get_Vector(argv[2], c);
|
1744
|
-
Data_Get_Vector(argv[3], r);
|
1745
|
-
ret = argv[3];
|
1746
|
-
break;
|
1747
|
-
default:
|
1748
|
-
rb_raise(rb_eArgError, "Wrong number of arguments %d (3 or 4).\n", argc);
|
1749
|
-
}
|
1750
|
-
gsl_multifit_linear_residuals(X, y, c, r);
|
1751
|
-
return ret;
|
1752
|
-
}
|
1753
|
-
|
1754
|
-
void Init_gsl_multifit(VALUE module)
|
1755
|
-
{
|
1756
|
-
VALUE mgsl_multifit;
|
1757
|
-
VALUE cgsl_multifit_fdfsolver;
|
1758
|
-
VALUE cgsl_multifit_solver;
|
1759
|
-
|
1760
|
-
mgsl_multifit = rb_define_module_under(module, "MultiFit");
|
1761
|
-
|
1762
|
-
cgsl_multifit_workspace = rb_define_class_under(mgsl_multifit, "Workspace",
|
1763
|
-
cGSL_Object);
|
1764
|
-
rb_define_singleton_method(cgsl_multifit_workspace, "new",
|
1765
|
-
rb_gsl_multifit_workspace_new, 2);
|
1766
|
-
rb_define_singleton_method(cgsl_multifit_workspace, "alloc",
|
1767
|
-
rb_gsl_multifit_workspace_new, 2);
|
1768
|
-
rb_define_singleton_method(mgsl_multifit, "alloc",
|
1769
|
-
rb_gsl_multifit_workspace_new, 2);
|
1770
|
-
rb_define_module_function(mgsl_multifit, "linear", rb_gsl_multifit_linear, -1);
|
1771
|
-
rb_define_module_function(mgsl_multifit, "wlinear", rb_gsl_multifit_wlinear, -1);
|
1772
|
-
|
1773
|
-
cgsl_multifit_solver = rb_define_class_under(mgsl_multifit, "Solver", cGSL_Object);
|
1774
|
-
cgsl_multifit_fdfsolver = rb_define_class_under(mgsl_multifit, "FdfSolver",
|
1775
|
-
cgsl_multifit_solver);
|
1776
|
-
cgsl_multifit_function_fdf = rb_define_class_under(mgsl_multifit, "Function_fdf",
|
1777
|
-
cGSL_Object);
|
1778
|
-
|
1779
|
-
/*****/
|
1780
|
-
|
1781
|
-
rb_define_singleton_method(cgsl_multifit_fdfsolver, "new",
|
1782
|
-
rb_gsl_multifit_fdfsolver_new, -1);
|
1783
|
-
rb_define_singleton_method(cgsl_multifit_fdfsolver, "alloc",
|
1784
|
-
rb_gsl_multifit_fdfsolver_new, -1);
|
1785
|
-
|
1786
|
-
rb_define_singleton_method(cgsl_multifit_function_fdf, "new",
|
1787
|
-
rb_gsl_multifit_function_fdf_new, -1);
|
1788
|
-
rb_define_singleton_method(cgsl_multifit_function_fdf, "alloc",
|
1789
|
-
rb_gsl_multifit_function_fdf_new, -1);
|
1790
|
-
|
1791
|
-
/*****/
|
1792
|
-
|
1793
|
-
rb_define_method(cgsl_multifit_fdfsolver, "set", rb_gsl_multifit_fdfsolver_set, 2);
|
1794
|
-
rb_define_method(cgsl_multifit_fdfsolver, "name", rb_gsl_multifit_fdfsolver_name, 0);
|
1795
|
-
rb_define_method(cgsl_multifit_fdfsolver, "iterate", rb_gsl_multifit_fdfsolver_iterate, 0);
|
1796
|
-
rb_define_method(cgsl_multifit_fdfsolver, "position", rb_gsl_multifit_fdfsolver_position, 0);
|
1797
|
-
// rb_define_alias(cgsl_multifit_fdfsolver, "x", "position");
|
1798
|
-
rb_define_method(cgsl_multifit_fdfsolver, "print_state", rb_gsl_multifit_fdfsolver_print_state, 1);
|
1799
|
-
rb_define_method(cgsl_multifit_fdfsolver, "fdf", rb_gsl_multifit_fdfsolver_fdf, 0);
|
1800
|
-
rb_define_method(cgsl_multifit_fdfsolver, "test_delta", rb_gsl_multifit_fdfsolver_test_delta, 2);
|
1801
|
-
rb_define_method(cgsl_multifit_fdfsolver, "test_gradient", rb_gsl_multifit_fdfsolver_test_gradient, -1);
|
1802
|
-
rb_define_method(cgsl_multifit_fdfsolver, "covar", rb_gsl_multifit_fdfsolver_covar, -1);
|
1803
|
-
rb_define_method(cgsl_multifit_fdfsolver, "gradient", rb_gsl_multifit_fdfsolver_gradient, -1);
|
1804
|
-
rb_define_method(cgsl_multifit_fdfsolver, "x", rb_gsl_multifit_fdfsolver_x, 0);
|
1805
|
-
rb_define_method(cgsl_multifit_fdfsolver, "dx", rb_gsl_multifit_fdfsolver_dx, 0);
|
1806
|
-
rb_define_method(cgsl_multifit_fdfsolver, "f", rb_gsl_multifit_fdfsolver_f, 0);
|
1807
|
-
rb_define_method(cgsl_multifit_fdfsolver, "J", rb_gsl_multifit_fdfsolver_J, 0);
|
1808
|
-
rb_define_alias(cgsl_multifit_fdfsolver, "jac", "J");
|
1809
|
-
rb_define_alias(cgsl_multifit_fdfsolver, "jacobian", "J");
|
1810
|
-
rb_define_alias(cgsl_multifit_fdfsolver, "Jacobian", "J");
|
1811
|
-
|
1812
|
-
/*****/
|
1813
|
-
rb_define_module_function(mgsl_multifit, "polyfit", rb_gsl_multifit_polyfit, -1);
|
1814
|
-
rb_define_module_function(mgsl_multifit, "legfit", rb_gsl_multifit_legfit, -1);
|
1815
|
-
/*****/
|
1816
|
-
|
1817
|
-
rb_define_singleton_method(mgsl_multifit, "test_delta", rb_gsl_multifit_test_delta, 4);
|
1818
|
-
rb_define_singleton_method(mgsl_multifit, "test_gradient", rb_gsl_multifit_test_gradient, 2);
|
1819
|
-
rb_define_singleton_method(mgsl_multifit, "gradient", rb_gsl_multifit_gradient, -1);
|
1820
|
-
rb_define_singleton_method(mgsl_multifit, "covar", rb_gsl_multifit_covar, -1);
|
1821
|
-
|
1822
|
-
rb_gsl_multifit_define_const(cgsl_multifit_fdfsolver);
|
1823
|
-
|
1824
|
-
rb_define_method(cgsl_multifit_function_fdf, "set_procs",
|
1825
|
-
rb_gsl_multifit_function_fdf_set_procs, -1);
|
1826
|
-
rb_define_method(cgsl_multifit_function_fdf, "set_data",
|
1827
|
-
rb_gsl_multifit_function_fdf_set_data, -1);
|
1828
|
-
rb_define_method(cgsl_multifit_function_fdf, "params",
|
1829
|
-
rb_gsl_multifit_function_fdf_params, 0);
|
1830
|
-
rb_define_alias(cgsl_multifit_function_fdf, "param", "params");
|
1831
|
-
|
1832
|
-
rb_define_method(cgsl_multifit_function_fdf, "n",
|
1833
|
-
rb_gsl_multifit_function_fdf_n, 0);
|
1834
|
-
rb_define_method(cgsl_multifit_function_fdf, "set_n",
|
1835
|
-
rb_gsl_multifit_function_fdf_set_n, 1);
|
1836
|
-
rb_define_alias(cgsl_multifit_function_fdf, "n=", "set_n");
|
1837
|
-
rb_define_method(cgsl_multifit_function_fdf, "p",
|
1838
|
-
rb_gsl_multifit_function_fdf_p, 0);
|
1839
|
-
rb_define_alias(cgsl_multifit_function_fdf, "np", "p");
|
1840
|
-
|
1841
|
-
/*****/
|
1842
|
-
rb_define_singleton_method(cgsl_multifit_fdfsolver, "fit", rb_gsl_multifit_fit, -1);
|
1843
|
-
|
1844
|
-
/***/
|
1845
|
-
rb_define_module_function(mgsl_multifit, "linear_est", rb_gsl_multifit_linear_est, 3);
|
1846
|
-
rb_define_module_function(module, "multifit_linear_est", rb_gsl_multifit_linear_est, 3);
|
1847
|
-
|
1848
|
-
rb_define_module_function(mgsl_multifit, "linear_residuals", rb_gsl_multifit_linear_residuals, -1);
|
1849
|
-
rb_define_module_function(module, "multifit_linear_residuals", rb_gsl_multifit_linear_residuals, -1);
|
1850
|
-
|
1851
|
-
#ifdef HAVE_NDLINEAR_GSL_MULTIFIT_NDLINEAR_H
|
1852
|
-
Init_ndlinear(mgsl_multifit);
|
1853
|
-
#endif
|
1854
|
-
|
1855
|
-
}
|
1856
|
-
|
1857
|
-
#ifdef CHECK_WORKSPACE
|
1858
|
-
#undef CHECK_WORKSPACE
|
1859
|
-
#endif
|
1860
|
-
#ifdef CHECK_MULTIFIT_FUNCTION_FDF
|
1861
|
-
#undef CHECK_MULTIFIT_FUNCTION_FDF
|
1862
|
-
#endif
|