plan_executor 1.0.2

data/test/fixtures/testscript-search.xml

@@ -0,0 +1,282 @@
+<TestScript xmlns="http://hl7.org/fhir">
+  <id value="SearchTestScript"/>
+  <url value="http://hl7.org/fhir/TestScript/search"/>
+  <name value="Read, Search and Conditional Create and Delete"/>
+  <status value="draft"/>
+  <description value="Test Script for testing search, read, and conditional create and delete"/>
+  <contained>
+    <Conformance xmlns="http://hl7.org/fhir">
+      <id value="conf1"/>
+      <date value="2012-01-04"/>
+      <kind value="instance"/>
+      <fhirVersion value="1.0.0"/>
+      <acceptUnknown value="both"/>
+      <format value="xml"/>
+      <format value="json"/>
+      <rest>
+        <mode value="server"/>
+        <resource>
+          <type value="Patient"/>
+          <interaction>
+            <code value="read"/>
+          </interaction>
+        </resource>
+      </rest>
+    </Conformance>
+    <Patient xmlns="http://hl7.org/fhir">
+      <id value="patient1"/>
+      <name>
+        <use value="official"/>
+        <family value="Doe"/>
+        <given value="John"/>
+      </name>
+      <birthDate value="1974-12-31" />
+    </Patient>
+  </contained>
+  <metadata>
+    <capability>
+      <required value="true"/>
+      <description value="Patient Create and Read Operations"/>
+      <link value="http://hl7.org/implement/standards/FHIR-Develop/http.html#create"/>
+      <link value="http://hl7.org/implement/standards/FHIR-Develop/http.html#read"/>
+      <conformance>
+        <reference value="#conf1"/>
+      </conformance>
+    </capability>
+    <capability>
+      <required value="true"/>
+      <description value="Patient Conditional Delete Operation"/>
+      <link value="http://hl7-fhir.github.io/http.html#2.1.0.12.1"/>
+      <conformance>
+        <reference value="#conf1"/>
+      </conformance>
+    </capability>
+    <capability>
+      <required value="true"/>
+      <description value="Patient Conditional Create Operation"/>
+      <link value="http://hl7-fhir.github.io/http.html#2.1.0.13.1"/>
+      <conformance>
+        <reference value="#conf1"/>
+      </conformance>
+    </capability>
+  </metadata>      
+  <fixture id="example-patient">
+    <resource>
+      <reference value="#patient1"/>
+    </resource>
+  </fixture>
+  <variable>
+    <name value="V1"/>
+    <headerField value="Location"/>
+    <sourceId value="R1"/>
+  </variable>  
+  <variable>
+    <name value="V2"/>
+    <path value="fhir:Bundle/fhir:entry/fhir:resource/fhir:Patient/fhir:id/@value"/>
+    <sourceId value="R3"/>
+  </variable>      
+  <setup>
+    <!-- TODO: Conditional Delete -->
+    <!-- Conditional Delete     -->
+    <action>
+      <operation>
+        <type>
+          <code value="delete"/>
+        </type>
+        <resource value="Patient"/>
+        <params value="given=John&amp;family=Doe"/>
+      </operation>
+    </action>    
+  </setup>
+  <test id="Test1">
+    <name value="Create"/>
+    <description value="Create, read, search, conditional create, conditional delete."/>
+    <metadata>
+      <link>
+        <url value="http://hl7.org/implement/standards/FHIR-Develop/patient.html"/>
+        <description value="FHIR Patient"/>
+      </link>
+      <capability>
+        <validated value="true"/>
+        <description value="Patient Search Operation"/>
+        <link value="http://hl7.org/implement/standards/FHIR-Develop/http.html#search"/>
+        <conformance>
+          <reference value="#conf1"/>
+        </conformance>
+      </capability>
+    </metadata>  
+    <!--     Create the patient using fixture     -->    
+    <action>
+      <operation>
+        <type>
+          <code value="create"/>
+        </type>
+        <sourceId value="example-patient"/>
+      </operation>
+    </action>
+    <action>
+      <assert>
+        <responseCode value="201"/>
+      </assert>
+    </action>
+    <!--     Patient search by name.  Save the responseBody in 'F1' fixture.
+        Save the responseHeader in H1     -->
+    <action>
+      <operation>
+        <type>
+          <code value="search"/>
+        </type>
+        <resource value="Patient"/>
+        <contentType value="json"/>  
+        <params value="?given=John&amp;family=Doe"/>
+        <responseId value="R1"/>
+      </operation>
+    </action>
+    <!--     Verify that the Location in response-header is valid     -->
+    <!-- TODO: Should this be content-location? -->
+    <action>
+      <assert>
+        <headerField value="Location"/>
+        <operator value="notEmpty"/>
+        <warningOnly value="true"/>
+      </assert>
+    </action>
+    <!--     Verify that the birthdate got persisted and is being returned properly     -->
+    <action>
+      <assert>
+        <operator value="equals"/>
+        <path value="fhir:Bundle/fhir:entry/fhir:resource/fhir:Patient/fhir:birthDate/@value"/>
+        <sourceId value="R1"/>
+        <value value="1974-12-31"/>
+        <warningOnly value="true"/>
+      </assert>
+    </action>  
+    <!--     Verify that the navigation links are valid     -->
+    <action>
+      <assert>
+        <navigationLinks value="true"/>
+        <warningOnly value="true"/>
+      </assert>
+    </action>
+    
+    <!--     Use the Location returned earlier to grab the resource
+         to verify that Location was pointing to correct resource.     -->  
+    <!-- TODO: be able to pass in a direct url to client -->
+    <!-- <action> -->
+    <!--   <operation> -->
+    <!--     <type> -->
+    <!--       <code value="search"/> -->
+    <!--     </type> -->
+    <!--     <accept value="json"/> -->
+    <!--     <responseId value="R2"/> -->
+    <!--     <url value="${V1}"/> -->
+    <!--   </operation> -->
+    <!-- </action> -->
+    <!-- <action> -->
+    <!--   <assert> -->
+    <!--     <contentType value="json"/> -->
+    <!--   </assert> -->
+    <!-- </action> -->
+    <!-- <action> -->
+    <!--   <assert> -->
+    <!--     <response value="okay"/> -->
+    <!--   </assert> -->
+    <!-- </action> -->
+            
+    <!--     Search for the resource but this time using the birthdate 
+        as a search parameter to make sure search by birthDate works     -->  
+    <action>
+      <operation>
+        <type>
+          <code value="search"/>
+        </type>
+        <resource value="Patient"/>
+        <accept value="json"/>
+        <params value="?given=John&amp;family=Doe&amp;birthdate=1974-12-31"/>
+        <responseId value="R3"/>
+      </operation>
+    </action>  
+    <action>
+      <assert>
+        <contentType value="json"/>
+      </assert>
+    </action>
+    <action>
+      <assert>
+        <response value="okay"/>
+      </assert>
+    </action>
+        
+    <!--     Verify that the birthDate matches expectations     -->  
+    <!-- TODO: THIS RELIES ON THE R2 RESPONSE, which I have commented out until direct url grabs possible -->
+    <!-- <action> -->
+    <!--   <assert> -->
+    <!--     <compareToSourceId value="R2"/> -->
+    <!--     <compareToSourcePath value="fhir:Patient/fhir:birthDate/@value"/>         -->
+    <!--     <path value="fhir:Patient/fhir:birthDate/@value"/> -->
+    <!--     <sourceId value="R3"/> -->
+    <!--   </assert> -->
+    <!-- </action> -->
+    <!-- <!&#45;&#45;     Verify that the name matches expectations     &#45;&#45;>   -->
+    <!-- <action> -->
+    <!--   <assert> -->
+    <!--     <path value="fhir:Patient/fhir:name/fhir:given/@value"/> -->
+    <!--     <sourceId value="R3"/> -->
+    <!--     <value value="John"/> -->
+    <!--   </assert> -->
+    <!-- </action>     -->
+    
+        
+    <!-- TODO: Conditional Create -->
+    <!-- <!&#45;&#45;     Conditional Create     &#45;&#45;> -->
+    <!-- <action> -->
+    <!--   <operation> -->
+    <!--     <type> -->
+    <!--       <code value="create"/> -->
+    <!--     </type> -->
+    <!--     <requestHeader> -->
+    <!--       <field value="If&#45;None&#45;Exist"/> -->
+    <!--       <value value="Patient?given=John&#38;amp;Doe&#38;amp;birthdate=1974&#45;12&#45;31"/> -->
+    <!--     </requestHeader> -->
+    <!--     <sourceId value="F1"/> -->
+    <!--   </operation> -->
+    <!-- </action>   -->
+    <!-- <!&#45;&#45;     The response code of 200 verifies that the resource  -->
+    <!--     already exists and did not get created     &#45;&#45;>   -->
+    <!-- <action> -->
+    <!--   <assert> -->
+    <!--     <responseCode value="200"/> -->
+    <!--   </assert> -->
+    <!-- </action>       -->
+    <!--      -->
+
+    <!-- TODO: Conditional Delete -->
+    <!-- <!&#45;&#45;     Conditional Delete     &#45;&#45;> -->
+    <!-- <action> -->
+    <!--   <operation> -->
+    <!--     <type> -->
+    <!--       <code value="delete"/> -->
+    <!--     </type> -->
+    <!--     <resource value="Patient"/> -->
+    <!--     <params value="?given=John&#38;amp;family=Doe&#38;amp;birthdate=1974&#45;12&#45;31"/> -->
+    <!--   </operation> -->
+    <!-- </action>   -->
+    
+    <!--     Search again and make sure the patient has been deleted.
+          This time perform read by id using variable     -->
+    <action>
+      <operation>
+        <type>
+          <code value="read"/>
+        </type>
+        <resource value="Patient"/>
+        <params value="/${V2}"/>
+      </operation>
+    </action>  
+    <action>
+      <assert>
+        <responseCode value="410"/>
+      </assert>
+    </action>
+  </test>
+</TestScript>

data/test/fixtures/testscript-update.xml

@@ -0,0 +1,147 @@
+<TestScript xmlns="http://hl7.org/fhir">
+  <id value="UpdateTestScript"/>
+  <url value="http://hl7.org/fhir/TestScript/update"/>
+  <name value="Update Test Script"/>
+  <status value="draft"/>
+  <description value="Test Script for update of the patient resource"/>
+  <contained>
+    <Conformance xmlns="http://hl7.org/fhir">
+      <id value="conf1"/>
+      <date value="2012-01-04"/>
+      <kind value="instance"/>
+      <fhirVersion value="1.0.0"/>
+      <acceptUnknown value="both"/>
+      <format value="xml"/>
+      <format value="json"/>
+      <rest>
+        <mode value="server"/>
+        <resource>
+          <type value="Patient"/>
+          <interaction>
+            <code value="create"/>
+          </interaction>
+          <interaction>
+            <code value="read"/>
+          </interaction>
+          <interaction>
+            <code value="update"/>
+          </interaction>
+          <interaction>
+            <code value="delete"/>
+          </interaction>
+        </resource>
+      </rest>
+    </Conformance>
+    <Patient xmlns="http://hl7.org/fhir">
+      <id value="patient"/>
+      <name>
+        <use value="official"/>
+        <family value="Doe"/>
+        <given value="John"/>
+      </name>
+      <birthDate value="1974-12-31" />
+    </Patient>
+    <Patient xmlns="http://hl7.org/fhir">
+      <id value="patient-updated"/>
+      <name>
+        <use value="official"/>
+        <family value="NotDoe"/>
+        <given value="John"/>
+      </name>
+    </Patient>
+  </contained>
+  <fixture id="example-patient">
+    <resource>
+      <reference value="#patient"/>
+    </resource>
+  </fixture>
+  <fixture id="example-patient-updated">
+    <resource>
+      <reference value="#patient-updated"/>
+    </resource>
+  </fixture>  
+  <setup>
+    <action>
+      <operation>
+        <type>
+          <code value="create"/>
+        </type>
+        <sourceId value="example-patient"/>
+      </operation>
+    </action>
+  </setup>
+  <test id="UPDATE01">
+    <name value="Update Patient"/>
+    <description value="Update a patient and validate response."/>
+    <metadata>
+      <capability>
+        <required value="true"/>
+        <description value="Patient Create, Read, and Delete Operations"/>
+        <link value="http://hl7.org/implement/standards/FHIR-Develop/http.html#create"/>
+        <link value="http://hl7.org/implement/standards/FHIR-Develop/http.html#read"/>
+        <link value="http://hl7.org/implement/standards/FHIR-Develop/http.html#delete"/>
+        <conformance>
+          <reference value="#conf1"/>
+        </conformance>
+      </capability>
+      <capability>
+        <validated value="true"/>
+        <description value="Patient Update Operation"/>
+        <link value="http://hl7.org/implement/standards/FHIR-Develop/http.html#update"/>
+        <conformance>
+          <reference value="#conf1"/>
+        </conformance>
+      </capability>      
+    </metadata>      
+    <action>
+      <operation>
+        <type>
+          <code value="update"/>
+        </type>
+        <sourceId value="example-patient-updated"/>
+        <targetId value="example-patient"/>
+      </operation>
+    </action>
+    <action>
+      <assert>
+        <responseCode value="200"/>
+      </assert>
+    </action>
+    <action>
+      <assert>
+        <headerField value="Last-Modified"/>
+        <operator value="notEmpty"/>
+      </assert>
+    </action>
+    <action>
+      <operation>
+        <type>
+          <code value="read"/>
+        </type>
+        <targetId value="example-patient"/>
+      </operation>
+    </action>
+    <action>
+      <assert>
+        <response value="okay"/>
+      </assert>
+    </action>
+    <action>
+      <assert>
+        <operator value="equals"/>
+        <path value="fhir:Patient/fhir:name/fhir:family/@value"/>
+        <value value="NotDoe"/>
+      </assert>
+    </action>
+  </test>
+  <teardown>
+    <action>
+      <operation>
+        <type>
+          <code value="delete"/>
+        </type>
+        <targetId value="example-patient"/>
+      </operation>
+    </action>
+  </teardown>
+</TestScript>

data/test/fixtures/vital_signs_bundle.xml

@@ -0,0 +1,117 @@
+<Bundle xmlns="http://hl7.org/fhir">
+  <id value="urn:uuid:744443410ff447a2a11dc191b4e0ab9b" />
+  <meta>
+      <lastUpdated value="2016-03-14T19:45:15.953+00:00" />
+  </meta>
+  <type value="searchset" />
+  <total value="2" />
+  <entry>
+      <resource>
+          <Observation>
+            <id value="691-bp" />
+            <status value="final" />
+            <category>
+              <coding>
+                <system value="http://hl7.org/fhir/observation-category"/>
+                <code value="vital-signs"/>
+                <display value="Vital Signs"/>
+              </coding>
+              <text value="Vital Signs"
+            </category>
+            <code>
+              <coding>
+                <system value="http://loinc.org"/>
+                <code value="55284-4"/>
+                <display value="Blood pressure systolic and diastolic"/>
+              </coding>
+              <text value="Blood pressure systolic and diastolic"
+            </code>
+            <subject>
+                <reference value="Patient/1186747" />
+            </subject>
+            <encounter>
+                <reference value="Encounter/691" />
+            </encounter>
+            <effectiveDateTime value="1999-07-02"/>
+            <component>
+              <code>
+                <coding>
+                  <system value="http://loinc.org"/>
+                  <code value="8480-6"/>
+                  <display value="Systolic blood pressure"/>
+                </coding>
+                <text value="Systolic blood pressure"
+              </code>
+              <valueQuantity>
+                  <value value="109" />
+                  <unit value="mmHg" />
+                  <system value="http://unitsofmeasure.org" />
+                  <code value="mm[Hg]"/>
+              </valueQuantity>
+            </component>
+            <component>
+              <code>
+                <coding>
+                  <system value="http://loinc.org"/>
+                  <code value="8462-4"/>
+                  <display value="Diastolic blood pressure"/>
+                </coding>
+                <text value="Diastolic blood pressure"
+              </code>
+              <valueQuantity>
+                  <value value="44" />
+                  <unit value="mmHg" />
+                  <system value="http://unitsofmeasure.org" />
+                  <code value="mm[Hg]"/>
+              </valueQuantity>
+            </component>
+
+          </Observation>
+      </resource>
+      <request>
+          <method value="POST" />
+          <url value="Observation/7c9f231034214f4bab08293c6deb1c60/_history/1" />
+      </request>
+  </entry>
+  <entry>
+      <resource>
+          <Observation>
+            <id value="692-bp" />
+            <status value="final" />
+            <category>
+              <coding>
+                <system value="http://hl7.org/fhir/observation-category"/>
+                <code value="vital-signs"/>
+                <display value="Vital Signs"/>
+              </coding>
+              <text value="Vital Signs"
+            </category>
+            <code>
+              <coding>
+                <system value="http://loinc.org"/>
+                <code value="8302-2"/>
+                <display value="body height"/>
+              </coding>
+              <text value="body height"
+            </code>
+            <subject>
+                <reference value="Patient/1186747" />
+            </subject>
+            <encounter>
+                <reference value="Encounter/691" />
+            </encounter>
+            <effectiveDateTime value="1999-07-02"/>
+            <valueQuantity>
+              <value value="109" />
+              <unit value="cm" />
+              <system value="http://unitsofmeasure.org" />
+              <code value="cm"/>
+            </valueQuantity>
+          </Observation>
+      </resource>
+      <request>
+          <method value="POST" />
+          <url value="Observation/7c9f231034214f4bab08293c6deb1c60/_history/1" />
+      </request>
+  </entry>
+</Bundle>

data/test/test_helper.rb

@@ -0,0 +1,8 @@
+require 'simplecov'
+require_relative '../lib/plan_executor'
+
+require 'pry'
+require 'minitest/autorun'
+require 'bundler/setup'
+require 'test/unit'
+require 'turn'

data/test/unit/argonaut_sprint6_test.rb

@@ -0,0 +1,31 @@
+require_relative '../test_helper'
+
+class ArgonautSprint6Test < Test::Unit::TestCase
+
+  def setup
+    @fixtures = File.absolute_path(File.join(File.absolute_path(__FILE__),'..','..','fixtures'))
+    @labs = FHIR::Bundle.from_xml File.read(File.join(@fixtures, 'lab_results_bundle.xml'))
+    @reports = FHIR::Bundle.from_xml File.read(File.join(@fixtures, 'diagnostic_bundle.xml'))
+    @test = Crucible::Tests::ArgonautSprint6Test.new nil
+    @test.instance_variable_set(:@warnings, [])
+  end
+
+  def test_validate_observation
+    reply = FHIR::ClientReply.new nil, nil
+    reply.resource = @labs
+
+    reply.response = Struct.new(:code).new(200)
+
+    @test.send(:validate_observation_reply, reply)
+  end
+
+  def test_validate_diagnostic_report
+    reply = FHIR::ClientReply.new nil, nil
+    reply.resource = @reports
+
+    reply.response = Struct.new(:code).new(200)
+
+    @test.send(:validate_diagnostic_report_reply, reply)
+  end
+
+end

data/test/unit/argonaut_sprint7_test.rb

@@ -0,0 +1,21 @@
+require_relative '../test_helper'
+
+class ArgonautSprint7Test < Test::Unit::TestCase
+
+  def setup
+    @fixtures = File.absolute_path(File.join(File.absolute_path(__FILE__),'..','..','fixtures'))
+    @bp_observation = FHIR::Bundle.from_xml File.read(File.join(@fixtures, 'vital_signs_bundle.xml'))
+    @test = Crucible::Tests::ArgonautSprint7Test.new nil
+    @test.instance_variable_set(:@warnings, [])
+  end
+
+  def test_validate_observation
+    reply = FHIR::ClientReply.new nil, nil
+    reply.resource = @bp_observation
+
+    reply.response = Struct.new(:code).new(200)
+
+    @test.send(:validate_observation_reply, reply)
+  end
+
+end

data/test/unit/basic_test.rb

@@ -0,0 +1,27 @@
+require_relative '../test_helper'
+
+class BasicTest < Test::Unit::TestCase
+
+  TESTING_ENDPOINT = 'http://fhir.healthintersections.com.au/open'
+
+  def test_suite_list
+    tests = Crucible::Tests::Executor.list_all
+    puts tests.keys.count
+    assert !tests.blank?, "Failed to list tests."
+  end
+
+  def test_testscript_list
+    skip
+    tests = Crucible::Tests::TestScriptEngine.list_all
+    assert !tests.blank?, "Failed to list testscripts."
+
+    testscript_engine = Crucible::Tests::TestScriptEngine.new(nil)
+
+    keyed_test = testscript_engine.find_test('example')
+    assert !keyed_test.nil?, "Failed to find testscript by key"
+
+    results = keyed_test.execute
+    assert !results.nil? && !results.blank?, "Failed to execute testscript"
+  end
+
+end