plan_executor 1.0.2

data/fixtures/validation/observations/observation-example(example).xml

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+<Observation xmlns="http://hl7.org/fhir">
+  <id value="example"/>
+
+  <!--
+    Observations are often coded in multiple code systems.
+      - Loinc provides a very specific code (though not usefully more specific in this particular case)
+      - snomed provides a clinically relevant code that is usually less granular than LOINC
+      - the source system provides it's own code, which may be less or more granular than LOINC
+   -->
+   <code><!--    LOINC - always recommended to have a LOINC code    -->
+     <coding>
+       <system value="http://loinc.org"/>
+       <code value="3141-9"/>
+       <display value="Weight Measured"/>
+     </coding><!--    SNOMED CT Codes - becoming more common    -->
+     <coding>
+       <system value="http://snomed.info/sct"/>
+       <code value="27113001"/>
+       <display value="Body weight"/>
+     </coding><!--    Also, a local code specific to the source system    -->
+     <coding>
+       <system value="http://acme.org/devices/clinical-codes"/>
+       <code value="body-weight"/>
+       <display value="Body Weight"/>
+     </coding>
+   </code>
+
+  <!--  In FHIR, units may be represented twice. Once in the
+    agreed human representation, and once in a coded form.
+    Both is best, since it's not always possible to infer
+    one from the other in code.
+
+    When a computable unit is provided, UCUM (http://unitsofmeasure.org)
+    is always preferred, but it doesn't provide notional units (such as
+    "tablet"), etc. For these, something else is required (e.g. Snomed-CT)
+    -->
+  <valueQuantity>
+    <value value="185"/>
+    <units value="lbs"/>
+    <system value="http://unitsofmeasure.org"/>
+    <code value="[lb_av]"/>
+  </valueQuantity>
+  <!--  the mandatory quality flags:  -->
+  <status value="final"/>
+  <reliability value="ok"/>
+  <subject>
+      <reference value="Patient/example"/>
+  </subject>
+
+</Observation>

data/lib/FHIR_structure.json

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+{
+  "name": "FHIR",
+  "children": [
+    {
+      "name": "OPERATIONS",
+      "children": [
+        {
+          "name": "RESTful API",
+          "children": [
+            {
+              "name": "Instance Level Interactions",
+              "children": [
+                {
+                  "name": "read"
+                },{
+                  "name": "vread"
+                },{
+                  "name": "update"
+                },{
+                  "name": "delete"
+                },{
+                  "name": "history"
+                }
+              ]
+            },{
+              "name": "Type Level Interactions",
+              "children": [
+                {
+                  "name": "create"
+                },{
+                  "name": "search"
+                },{
+                  "name": "history-type"
+                }
+              ]
+            },{
+              "name": "Whole System Interactions",
+              "children": [
+                {
+                  "name": "conformance-system"
+                },{
+                  "name": "transaction-system"
+                },{
+                  "name": "history-system"
+                },{
+                  "name": "search-system"
+                }
+              ]
+            }
+          ]
+        },{
+          "name": "Extended Operations",
+          "children": [
+            {
+              "name": "$validate"
+            },{
+              "name": "$meta"
+            },{
+              "name": "$meta-add"
+            },{
+              "name": "$meta-delete"
+            },{
+              "name": "$document"
+            },{
+              "name": "$translate"
+            },{
+              "name": "$closure"
+            },{
+              "name": "$everything"
+            },{
+              "name": "$find"
+            },{
+              "name": "$process-message"
+            },{
+              "name": "$populate"
+            },{
+              "name": "$questionnaire"
+            },{
+              "name": "$expand"
+            },{
+              "name": "$lookup"
+            },{
+              "name": "$validate-code"
+            },{
+              "name": "$guidance"
+            },{
+              "name": "$guidance-requirements"
+            }
+          ]
+        }
+      ]
+    },{
+      "name": "RESOURCES",
+      "children": [
+        {
+          "name": "Clinical",
+          "children": [
+            {
+              "name": "General Clinical",
+              "children": [
+                {
+                  "name": "allergy intolerance"
+                },{
+                  "name": "condition"
+                },{
+                  "name": "procedure"
+                },{
+                  "name": "family member history"
+                },{
+                  "name": "clinical impression"
+                },{
+                  "name": "risk assessment"
+                },{
+                  "name": "detected issue"
+                }
+              ]
+            },{
+              "name": "Care Provision",
+              "children": [
+                {
+                  "name": "care plan"
+                },{
+                  "name": "goal"
+                },{
+                  "name": "referral request"
+                },{
+                  "name": "procedure request"
+                },{
+                  "name": "nutrition order"
+                },{
+                  "name": "vision prescription"
+                }
+              ]
+            },{
+              "name": "Medication Management",
+              "children": [
+                {
+                  "name": "medication"
+                },{
+                  "name": "medication order"
+                },{
+                  "name": "medication administration"
+                },{
+                  "name": "medication dispense"
+                },{
+                  "name": "medication statement"
+                },{
+                  "name": "immunization"
+                },{
+                  "name": "immunization recommendation"
+                }
+              ]
+            },{
+              "name": "Diagnostics",
+              "children": [
+                {
+                  "name": "observation"
+                },{
+                  "name": "diagnostic report"
+                },{
+                  "name": "diagnostic order"
+                },{
+                  "name": "imaging study"
+                },{
+                  "name": "imaging object selection"
+                },{
+                  "name": "specimen"
+                },{
+                  "name": "body site"
+                }
+              ]
+            }
+          ]
+        },{
+          "name": "Administrative",
+          "children": [
+            {
+              "name": "Individuals",
+              "children": [
+                {
+                  "name": "patient"
+                },{
+                  "name": "related person"
+                },{
+                  "name": "practitioner"
+                }
+              ]
+            },{
+              "name": "Groups",
+              "children": [
+                {
+                  "name": "organization"
+                },{
+                  "name": "healthcare service"
+                },{
+                  "name": "group"
+                }
+              ]
+            },{
+              "name": "Entities",
+              "children": [
+                {
+                  "name": "location"
+                },{
+                  "name": "substance"
+                },{
+                  "name": "person"
+                },{
+                  "name": "contract"
+                }
+              ]
+            },{
+              "name": "Device",
+              "children": [
+                {
+                  "name": "device"
+                },{
+                  "name": "device component"
+                },{
+                  "name": "device metric"
+                }
+              ]
+            }
+          ]
+        },{
+          "name": "Work Flow",
+          "children": [
+            { "name": "Patient Management",
+              "children": [
+                {
+                  "name": "encounter"
+                },{
+                  "name": "episode of care"
+                },{
+                  "name": "flag"
+                },{
+                  "name": "communication"
+                }
+              ]
+            },{
+              "name": "Scheduling",
+              "children": [
+                {
+                  "name": "appointment"
+                },{
+                  "name": "appointment response"
+                },{
+                  "name": "schedule"
+                },{
+                  "name": "slot"
+                }
+              ]
+            },{
+              "name": "Order Management",
+              "children": [
+                {
+                  "name": "order"
+                },{
+                  "name": "order response"
+                },{
+                  "name": "communication request"
+                },{
+                  "name": "device use request"
+                },{
+                  "name": "device use statement"
+                },{
+                  "name": "process request"
+                },{
+                  "name": "process response"
+                },{
+                  "name": "supply delivery"
+                },{
+                  "name": "supply request"
+                }
+              ]
+            }
+          ]
+        },{
+          "name": "Infrastructure",
+          "children": [
+            {
+              "name": "Information Management",
+              "children": [
+                {
+                  "name": "questionnaire"
+                },{
+                  "name": "questionnaire response"
+                },{
+                  "name": "provenance"
+                },{
+                  "name": "audit event"
+                }
+              ]
+            },{
+              "name": "Documents",
+              "children": [
+                {
+                  "name": "list"
+                },{
+                  "name": "composition"
+                },{
+                  "name": "document reference"
+                },{
+                  "name": "document manifest"
+                }
+              ]
+            },{
+              "name": "Structures",
+              "children": [
+                {
+                  "name": "media"
+                },{
+                  "name": "binary"
+                },{
+                  "name": "bundle"
+                },{
+                  "name": "basic"
+                }
+              ]
+            },{
+              "name": "Exchange",
+              "children": [
+                {
+                  "name": "message header"
+                },{
+                  "name": "operation outcome"
+                },{
+                  "name": "subscription"
+                },{
+                  "name": "parameters"
+                }
+              ]
+            }
+          ]
+        },{
+          "name": "Conformance",
+          "children": [
+            {
+              "name": "Terminology",
+              "children": [
+                {
+                  "name": "value set"
+                },{
+                  "name": "concept map"
+                },{
+                  "name": "naming system"
+                }
+              ]
+            },{
+              "name": "Content",
+              "children": [
+                {
+                  "name": "structure definition"
+                },{
+                  "name": "data element"
+                }
+              ]
+            },{
+              "name": "Behavior",
+              "children": [
+                {
+                  "name": "conformance"
+                },{
+                  "name": "operation definition"
+                },{
+                  "name": "search parameter"
+                }
+              ]
+            },{
+              "name": "Miscellaneous",
+              "children": [
+                {
+                  "name": "implementation guide"
+                },{
+                  "name": "test script"
+                }
+              ]
+            }
+          ]
+        },{
+          "name": "Financial",
+          "children": [
+            {
+              "name": "Support",
+              "children": [
+                {
+                  "name": "account"
+                },{
+                  "name": "coverage"
+                },{
+                  "name": "eligibility request"
+                },{
+                  "name": "eligibility response"
+                },{
+                  "name": "enrollment request"
+                },{
+                  "name": "enrollment response"
+                }
+              ]
+            },{
+              "name": "Billing",
+              "children": [
+                {
+                  "name": "claim"
+                },{
+                  "name": "claim response"
+                }
+              ]
+            },{
+              "name": "Payment",
+              "children": [
+                {
+                  "name": "payment notice"
+                },{
+                  "name": "payment reconciliation"
+                }
+              ]
+            },{
+              "name": "Other",
+              "children": [
+                {
+                  "name": "explanation of benefit"
+                }
+              ]
+            }
+          ]
+        }
+      ]
+    },{
+      "name": "FORMAT",
+      "children": [
+        {
+          "name": "XML"
+        },{
+          "name": "JSON"
+        }
+      ]
+    },{
+      "name": "SECURITY",
+      "children": [
+        {
+          "name": "General Security",
+          "children": [
+            {
+              "name": "Authorization/Access Control"
+            },{
+              "name": "OAuth2"
+            },{
+              "name": "Audit Logging"
+            },{
+              "name": "Digital Signatures"
+            }
+          ]
+        },{
+          "name": "Security Labels",
+          "children": [
+            {
+              "name": "Confidentiality Codes"
+            },{
+              "name": "Celebrity / VIP"
+            },{
+              "name": "Staff"
+            },{
+              "name": "Keep information from patient"
+            },{
+              "name": "Contact/Employment Details Confidential"
+            },{
+              "name": "Diagnosis-related confidentiality"
+            },{
+              "name": "Author consent needed"
+            },{
+              "name": "Delete After Use"
+            },{
+              "name": "Do Not Reuse"
+            },{
+              "name": "Break The Glass"
+            },{
+              "name": "Confidentiality Classification"
+            },{
+              "name": "Sensitivity Category"
+            },{
+              "name": "Compartment Category"
+            },{
+              "name": "Integrity Category"
+            },{
+              "name": "Handling Caveat"
+            },{
+              "name": "US Privacy Law"
+            }
+          ]
+        }
+      ]
+    },{
+      "name": "MESSAGING",
+      "children": [
+        {
+          "name": "Consequence"
+        },{
+          "name": "Currency"
+        },{
+          "name": "Notification"
+        }
+      ]
+    },{
+      "name": "DOCUMENTS",
+      "children": []
+    },{
+      "name": "PROFILES",
+      "children": [
+        {
+          "name": "validate-profile"
+        }
+      ]
+    },{
+      "name": "EXTENSIONS",
+      "children": [
+        {
+          "name": "extensions"
+        },{
+          "name": "modifying extensions"
+        },{
+          "name": "complex extensions"
+        },{
+          "name": "primitive extensions"
+        }
+      ]
+    }
+  ]
+}

data/lib/daf_resource_generator.rb

@@ -0,0 +1,94 @@
+module Crucible
+  module Tests
+    class DAFResourceGenerator < ResourceGenerator
+
+      def self.daf_patient(identifier='0',name='Name')
+        resource = minimal_patient(identifier,name)
+        # resource.identifier = [ minimal_identifier(identifier) ]
+        # resource.name = [ minimal_humanname(name) ]
+        resource.meta = FHIR::Resource::ResourceMetaComponent.new
+        resource.meta.profile = ['http://hl7.org/fhir/StructureDefinition/daf-patient']
+        # DAF must supports and DAF extensions
+        resource.active = true
+        resource.telecom = [ daf_contact_point ]
+        resource.gender = 'unknown'
+        resource.birthDate = DateTime.now.strftime("%Y-%m-%d")
+        resource.deceasedBoolean = false
+        resource.address = [ daf_address ]
+        resource.maritalStatus = minimal_codeableconcept('http://hl7.org/fhir/marital-status','S')
+        resource.multipleBirthBoolean = false
+        resource.contact = [ daf_patient_contact ]
+        resource.communication = [ daf_patient_communication ]
+        resource.careProvider = [ FHIR::Reference.new ] # reference to DAF-Organization or DAF-Pract
+        resource.careProvider.first.display = 'DAF Organization or Practitioner'
+        resource.managingOrganization = FHIR::Reference.new # reference to DAF-Organization
+        resource.managingOrganization.display = 'DAF Organization'
+        resource.extension = []
+        resource.extension << make_extension('http://hl7.org/fhir/StructureDefinition/us-core-race','CodeableConcept',minimal_codeableconcept('http://hl7.org/fhir/v3/Race','2106-3'))
+        resource.extension << make_extension('http://hl7.org/fhir/StructureDefinition/us-core-ethnicity','CodeableConcept',minimal_codeableconcept('http://hl7.org/fhir/v3/Ethnicity','2186-5'))
+        resource.extension << make_extension('http://hl7.org/fhir/StructureDefinition/us-core-religion','CodeableConcept',minimal_codeableconcept('http://hl7.org/fhir/v3/ReligiousAffiliation','1007'))
+        resource.extension << make_extension('http://hl7.org/fhir/StructureDefinition/patient-mothersMaidenName','String','Liberty')
+        resource.extension << make_extension('http://hl7.org/fhir/StructureDefinition/birthPlace','Address',daf_address)
+        resource
+      end
+
+      # Patient.name
+      # Sex Gender  Patient.gender
+      # Date of Birth Date of Birth Patient.birthDate
+      # Race  Race  Patient.extension(us-core-race)
+      # Ethnicity Ethnicity Patient.extension(us-core-ethnicity)
+      # Preferred Language  Preferred Language  Patient.communication.preferred
+      # Patient Identifiers Patient.identifier
+      # Multiple Birth Indicator  Patient.multipleBirthBoolean
+      # Birth Order Patient.multipleBirthInteger
+      # Mother's Maiden Name  Patient.extension(patient-mothers-maiden-name)
+      # Address Patient.address
+      # Telephone Patient.telecom
+      # Marital Status  Patient.maritalStatus
+      # Birth Place Patient.extension(birthplace)
+      # Religious Affiliation Patient.extension(religion)
+      # Guardian  Patient.contact
+
+      def self.daf_contact_point
+        resource = FHIR::ContactPoint.new
+        resource.system = 'phone'
+        resource.value = '1-800-555-1212'
+        resource.use = 'work'
+        resource
+      end
+
+      def self.daf_address
+        resource = FHIR::Address.new
+        resource.line = ['Statue of Liberty National Monument']
+        resource.city = 'New York'
+        resource.state = 'NY'
+        resource.postalCode = '10004'
+        resource.country = 'USA'
+        resource
+      end
+
+      def self.daf_patient_contact
+        resource = FHIR::Patient::ContactComponent.new
+        resource.relationship = [ minimal_codeableconcept('http://hl7.org/fhir/patient-contact-relationship','parent'), minimal_codeableconcept('http://hl7.org/fhir/patient-contact-relationship','emergency') ]
+        resource.name = minimal_humanname('Mom')
+        resource.telecom = [ daf_contact_point ]
+        resource.address = daf_address
+        resource
+      end
+
+      def self.daf_patient_communication
+        resource = FHIR::Patient::PatientCommunicationComponent.new
+        resource.language = minimal_codeableconcept('http://tools.ietf.org/html/bcp47','en-US')
+        resource
+      end
+
+      def self.make_extension(url,type,value)
+        extension = FHIR::Extension.new
+        extension.url = url
+        extension.value = FHIR::AnyType.new(type,value)
+        extension
+      end
+
+    end
+  end
+end

data/lib/data/fhir_structure.rb

@@ -0,0 +1,8 @@
+module Crucible
+  class FHIRStructure
+  	def self.get
+	    root = File.expand_path File.join('..','..'), File.dirname(File.absolute_path(__FILE__))
+	    JSON.parse(File.read(File.join(root, 'lib', 'FHIR_structure.json')))
+  	end
+  end
+end