plan_executor 1.0.2
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- checksums.yaml +7 -0
- data/.gitignore +44 -0
- data/.simplecov +16 -0
- data/.travis.yml +13 -0
- data/Gemfile +26 -0
- data/Gemfile.lock +197 -0
- data/LICENSE +201 -0
- data/README.md +126 -0
- data/Rakefile +25 -0
- data/fixtures/daf/conformance-daf-query-responder.xml +1471 -0
- data/fixtures/diagnostic_order/do-100.xml +64 -0
- data/fixtures/diagnostic_order/do-200.xml +121 -0
- data/fixtures/diagnostic_order/do-300.xml +91 -0
- data/fixtures/diagnostic_order/do-400.xml +88 -0
- data/fixtures/diagnostic_report/dr-100.xml +96 -0
- data/fixtures/diagnostic_report/dr-200.xml +125 -0
- data/fixtures/diagnostic_report/dr-300.xml +132 -0
- data/fixtures/diagnostic_report/dr-400.xml +121 -0
- data/fixtures/financial/claim-example-average.xml +168 -0
- data/fixtures/financial/claim-example-simple.xml +67 -0
- data/fixtures/observation/obs-100.xml +58 -0
- data/fixtures/observation/obs-101.xml +58 -0
- data/fixtures/observation/obs-200.xml +125 -0
- data/fixtures/observation/obs-300.xml +106 -0
- data/fixtures/observation/obs-301.xml +106 -0
- data/fixtures/observation/obs-302.xml +106 -0
- data/fixtures/observation/obs-303.xml +106 -0
- data/fixtures/observation/obs-304.xml +106 -0
- data/fixtures/observation/obs-400.xml +87 -0
- data/fixtures/observation/obs-401.xml +95 -0
- data/fixtures/observation/obs-402.xml +95 -0
- data/fixtures/observation/obs-403.xml +84 -0
- data/fixtures/observation/obs-404.xml +84 -0
- data/fixtures/observation/obs-405.xml +83 -0
- data/fixtures/observation/obs-406.xml +83 -0
- data/fixtures/observation/obs-407.xml +70 -0
- data/fixtures/observation/obs-408.xml +84 -0
- data/fixtures/observation/obs-uslab-example5.xml +102 -0
- data/fixtures/order/order-100.xml +61 -0
- data/fixtures/order/order-200.xml +61 -0
- data/fixtures/order/order-300.xml +61 -0
- data/fixtures/order/order-400.xml +61 -0
- data/fixtures/order_response/ordresp-100.xml +79 -0
- data/fixtures/order_response/ordresp-110.xml +79 -0
- data/fixtures/order_response/ordresp-200.xml +79 -0
- data/fixtures/order_response/ordresp-210.xml +79 -0
- data/fixtures/order_response/ordresp-300.xml +79 -0
- data/fixtures/order_response/ordresp-310.xml +79 -0
- data/fixtures/order_response/ordresp-400.xml +79 -0
- data/fixtures/order_response/ordresp-410.xml +79 -0
- data/fixtures/organization/org-uslab-example3.xml +49 -0
- data/fixtures/patient/patient-example-updated.xml +140 -0
- data/fixtures/patient/patient-example-us-extensions(us01).xml +81 -0
- data/fixtures/patient/patient-example.xml +132 -0
- data/fixtures/patient/patient-format-example.xml +101 -0
- data/fixtures/patient/patient-minimal.xml +9 -0
- data/fixtures/patient/patient-uslab-example1.xml +44 -0
- data/fixtures/practitioner/pract-uslab-example1.xml +18 -0
- data/fixtures/practitioner/pract-uslab-example3.xml +36 -0
- data/fixtures/record/condition-example-f201-fever.xml +63 -0
- data/fixtures/record/condition-example-f205-infection.xml +20 -0
- data/fixtures/record/diagnosticreport-example-f201-brainct.xml +18 -0
- data/fixtures/record/encounter-example-f201-20130404.xml +17 -0
- data/fixtures/record/encounter-example-f202-20130128.xml +17 -0
- data/fixtures/record/observation-example-f202-temperature.xml +60 -0
- data/fixtures/record/organization-example-f201-aumc.xml +5 -0
- data/fixtures/record/organization-example-f203-bumc.xml +5 -0
- data/fixtures/record/patient-example-f201-roel.xml +16 -0
- data/fixtures/record/practitioner-example-f201-ab.xml +14 -0
- data/fixtures/record/procedure-example-f201-tpf.xml +23 -0
- data/fixtures/scheduling/appointment-simple.xml +24 -0
- data/fixtures/scheduling/appointmentresponse-patient-simple.xml +12 -0
- data/fixtures/scheduling/appointmentresponse-practitioner-simple.xml +12 -0
- data/fixtures/scheduling/practitioner-simple.xml +10 -0
- data/fixtures/scheduling/schedule-simple.xml +12 -0
- data/fixtures/scheduling/slot-simple.xml +10 -0
- data/fixtures/specimen/spec-100.xml +65 -0
- data/fixtures/specimen/spec-400.xml +70 -0
- data/fixtures/specimen/spec-uslab-example1.xml +82 -0
- data/fixtures/validation/observation.profile.xml +2045 -0
- data/fixtures/validation/observations/observation-example(example).xml +50 -0
- data/lib/FHIR_structure.json +529 -0
- data/lib/daf_resource_generator.rb +94 -0
- data/lib/data/fhir_structure.rb +8 -0
- data/lib/data/resources.rb +138 -0
- data/lib/executor.rb +56 -0
- data/lib/ext/client.rb +27 -0
- data/lib/ext/client_reply.rb +19 -0
- data/lib/plan_executor.rb +31 -0
- data/lib/resource_generator.rb +656 -0
- data/lib/tasks/tasks.rake +329 -0
- data/lib/tasks/templates/summary.html.erb +163 -0
- data/lib/test_result.rb +69 -0
- data/lib/tests/assertions.rb +261 -0
- data/lib/tests/base_test.rb +117 -0
- data/lib/tests/suites/argonaut_resprint_1_test.rb +260 -0
- data/lib/tests/suites/argonaut_resprint_2_test.rb +369 -0
- data/lib/tests/suites/argonaut_resprint_3_test.rb +309 -0
- data/lib/tests/suites/argonaut_sprint_1_test.rb +187 -0
- data/lib/tests/suites/argonaut_sprint_2_test.rb +115 -0
- data/lib/tests/suites/argonaut_sprint_3_test.rb +208 -0
- data/lib/tests/suites/argonaut_sprint_4_test.rb +335 -0
- data/lib/tests/suites/argonaut_sprint_5_test.rb +196 -0
- data/lib/tests/suites/argonaut_sprint_6_test.rb +243 -0
- data/lib/tests/suites/argonaut_sprint_7_test.rb +161 -0
- data/lib/tests/suites/base_suite.rb +116 -0
- data/lib/tests/suites/connectathon_audit_track.rb +354 -0
- data/lib/tests/suites/connectathon_fetch_patient_record.rb +443 -0
- data/lib/tests/suites/connectathon_financial_track.rb +380 -0
- data/lib/tests/suites/connectathon_lab_order_track.rb +239 -0
- data/lib/tests/suites/connectathon_patient_track.rb +364 -0
- data/lib/tests/suites/connectathon_profile_validation.rb +101 -0
- data/lib/tests/suites/connectathon_scheduling_track.rb +266 -0
- data/lib/tests/suites/connectathon_terminology_track.rb +242 -0
- data/lib/tests/suites/daf_profiles_test.rb +431 -0
- data/lib/tests/suites/format_test.rb +453 -0
- data/lib/tests/suites/history_test.rb +311 -0
- data/lib/tests/suites/read_test.rb +104 -0
- data/lib/tests/suites/resource_test.rb +553 -0
- data/lib/tests/suites/search_test.rb +219 -0
- data/lib/tests/suites/search_test_robust.rb +172 -0
- data/lib/tests/suites/sprinkler_search_test.rb +660 -0
- data/lib/tests/suites/suite_engine.rb +114 -0
- data/lib/tests/suites/transaction_test.rb +571 -0
- data/lib/tests/testscripts/base_testscript.rb +480 -0
- data/lib/tests/testscripts/testscript_engine.rb +81 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/Client Assigned Id/track1-patient-base-client-id-json.xml +348 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/Client Assigned Id/track1-patient-bonus-client-id-json.xml +420 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/Server Assigned Id/track1-patient-base-server-id-json.xml +352 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/_reference/conformance/PatientConformance.xml +34 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/_reference/resources/patient-create-PeterChalmers-min.json +45 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/_reference/resources/patient-create-PeterChalmers-min.xml +26 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track11-SDC/_reference/C-CDA_R2-1_CCD-ussg.xml +3414 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/Lookup/track2-ts-suite5-loinc-lookup-xml.xml +224 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/README.html +85 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/Translate/track2-ts-suite6-translate-xml.xml +224 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/Validate-code/Client Assigned Id/track2-ts-suite3-validate-code-client-id.xml +1807 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ConceptMapSuite6Conformance.xml +11 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ValueSetSuite1Conformance.xml +17 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ValueSetSuite2Conformance.xml +17 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ValueSetSuite3Conformance.xml +14 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ValueSetSuite4Conformance.xml +14 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ValueSetSuite5Conformance.xml +11 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/conformance/DecisionSupportServiceModule-Evaluate.xml +17 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-incomplete-request-payload.xml +26 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-incomplete-response-min-payload.xml +7 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-malformed-request-payload.xml +28 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-request-payload.xml +28 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-response-min-payload.xml +7 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-response-payload.xml +332 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-unauthorized-request-payload.xml +28 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-unauthorized-response-payload.xml +8 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/gao-assessment-request-payload.xml +176 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/gao-assessment-response-payload-min.xml +32 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/gao-assessment-response-payload.xml +80 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/track3-cds-evaluate-cdc-immunization.xml +290 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/track3-cds-evaluate-gao-profile.xml +110 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track6-FHIR-Genomics/Client_Assigned_Id/TestScript_FHIR-Genomics.xml +170 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track6-FHIR-Genomics/_reference/resources/sequence-example-1.xml +31 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track6-FHIR-Genomics/_reference/resources/sequence-example-2.xml +31 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Actors.png +0 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Client_Assigned_Id/track7-laborder100-xml.xml +590 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Client_Assigned_Id/track7-laborder200-xml.xml +587 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Client_Assigned_Id/track7-laborder300-xml.xml +612 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Client_Assigned_Id/track7-laborder400-xml.xml +635 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Peer-to-Peer/track7-laborder100-peer2peer-xml.xml +752 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Thumbs.db +0 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/conformance/LabOrderLabReport-CreateDeleteReadUpdate.xml +187 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/conformance/html.xslt +45 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-100-update.xml +64 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-100.xml +64 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-200-update.xml +121 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-200.xml +121 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-300-update.xml +91 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-300.xml +91 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-400-update.xml +88 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-400.xml +88 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticReport/dr-100.xml +96 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticReport/dr-200.xml +125 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticReport/dr-300.xml +132 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticReport/dr-400.xml +121 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-100.xml +58 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-101.xml +58 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-200.xml +125 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-300.xml +106 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-301.xml +106 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-302.xml +106 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-303.xml +106 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-304.xml +106 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-400.xml +87 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-401.xml +95 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-402.xml +95 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-403.xml +84 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-404.xml +84 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-405.xml +83 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-406.xml +83 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-407.xml +70 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-408.xml +84 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-uslab-example5.xml +102 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Order/order-100.xml +61 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Order/order-200.xml +61 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Order/order-300.xml +61 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Order/order-400.xml +61 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-100.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-110.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-200.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-210.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-300.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-310.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-400.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-410.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Organization/org-uslab-example3.xml +49 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Patient/patient-uslab-example1.xml +44 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Practitioner/pract-uslab-example1.xml +18 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Practitioner/pract-uslab-example3.xml +36 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/Thumbs.db +0 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/spec-100.xml +65 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/spec-400.xml +70 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/spec-uslab-example1.xml +82 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 1 Document.txt +122 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 2 Document.txt +103 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 3 Document.txt +201 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 4 Document.txt +310 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/conformance/MedicationStatementCreate.xml +11 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/conformance/PatientSearchType.xml +15 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/resources/medicationstatement-create.json +39 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/resources/medicationstatement-patch.json +3 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-medicationstatement-json-if-match.xml +321 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-medicationstatement-json.xml +303 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-peer2peer-patient-json.xml +235 -0
- data/plan_executor.gemspec +14 -0
- data/test/fixtures/diagnostic_bundle.xml +51 -0
- data/test/fixtures/lab_results_bundle.xml +49 -0
- data/test/fixtures/observation_bundle.json +61 -0
- data/test/fixtures/testscript-example.xml +202 -0
- data/test/fixtures/testscript-history.xml +143 -0
- data/test/fixtures/testscript-readtest.xml +272 -0
- data/test/fixtures/testscript-search.xml +282 -0
- data/test/fixtures/testscript-update.xml +147 -0
- data/test/fixtures/vital_signs_bundle.xml +117 -0
- data/test/test_helper.rb +8 -0
- data/test/unit/argonaut_sprint6_test.rb +31 -0
- data/test/unit/argonaut_sprint7_test.rb +21 -0
- data/test/unit/basic_test.rb +27 -0
- data/test/unit/fetch_patient_record_test.rb +357 -0
- data/test/unit/financial_test.rb +41 -0
- data/test/unit/fixtures_test.rb +45 -0
- data/test/unit/metadata_test.rb +33 -0
- metadata +394 -0
@@ -0,0 +1,95 @@
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<?xml version="1.0" encoding="UTF-8"?>
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<Observation xmlns="http://hl7.org/fhir">
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<id value="obs-402"/>
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<text>
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<status value="generated"/>
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<div xmlns="http://www.w3.org/1999/xhtml">
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<p>
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<b>Generated Narrative with Details</b>
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</p>
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<p>
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<b>id</b>: obs-402</p>
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<p>
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<b>identifier</b>: obs-402</p>
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<p>
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<b>status</b>: final</p>
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<p>
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<b>code</b>: Stool Culture
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<span style="background: LightGoldenRodYellow ">(Details : {LOINC code "625-4" := "625-4", given as "Bacteria identified in Stool by Culture"})</span>
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</p>
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<p>
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<b>subject</b>:
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<a href="Patient/patient-uslab-example1">Todd Lerr</a>
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</p>
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<p>
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<b>effective</b>: 12/5/2014</p>
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<p>
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<b>issued</b>: 12/6/2014 3:42:15 PM</p>
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<p>
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<b>value</b>: Shigella flexneri isolated
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<span style="background: LightGoldenRodYellow ">(Details : {SNOMED CT code "85729005" := "85729005", given as "Shigella flexneri"})</span>
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</p>
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<p>
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<b>interpretation</b>: Abnormal
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<span style="background: LightGoldenRodYellow ">(Details : {http://hl7.org/fhir/v2/0078 code "A" := "Abnormal)</span>
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</p>
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<p>
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<b>comments</b>: Antibiotic treatment is recommended for patients with severe disease, bloody diarrhea, or compromised immune systems. Resistance to traditional first-line drugs like ampicillin and trimethoprim-sulfamethoxazole is common, and resistance to some other antibiotics is increasing. With this in mind, antibiotic susceptibility testing can help guide appropriate therapy. When an ampicillin- or trimethroprim-sulfamethoxazole-resistant strain is isolated, choices for therapy include fluoroquinolones, ceftriaxone, and azithromycin.</p>
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<p>
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<b>specimen</b>:
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<a href="Specimen/spec-uslab-example1">Blood sample</a>
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</p>
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</div>
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</text>
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<identifier>
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<system value="http://lis.acmelabs.org/identifiers/labtestresult"/>
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<value value="obs-402"/>
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</identifier>
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<status value="final"/>
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<!-- EH : The local and /or LOINC test codes go here -->
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<code>
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<!-- EH: LOINC code goes here -->
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<coding>
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<system value="http://loinc.org"/>
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<code value="625-4"/>
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<display value="Bacteria identified in Stool by Culture"/>
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<!-- EH: Local code goes here -->
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</coding>
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<text value="Stool Culture"/>
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</code>
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<subject>
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<reference value="Patient/patient-uslab-example1"/>
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<display value="Todd Lerr"/>
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</subject>
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<effectiveDateTime value="2014-12-05"/>
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<!-- EH: Showing dateTime to ss with TZO although only needed to Day -->
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<issued value="2014-12-06T15:42:15-08:00"/>
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<!-- In FHIR, units may be represented twice. Once in the agreed human representation, and once in a coded form. Both is best, since it's not always possible to infer one from the other in code. When a computable unit is provided, UCUM (http://unitsofmeasure.org) is always preferred, but it doesn't provide notional units (such as "tablet"), etc. For these, something else is required (e.g. Snomed-CT) -->
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<valueCodeableConcept>
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<coding>
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<system value="http://snomed.info/sct"/>
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<code value="85729005"/>
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<display value="Shigella flexneri"/>
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<!-- EH: Local code goes here -->
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</coding>
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<text value="Shigella flexneri isolated"/>
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</valueCodeableConcept>
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<!-- eH dataabsent reason would go here if valueQuantity was empty e.g.: <dataAbsentReason value="error"/> -->
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<interpretation>
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<coding>
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<system value="http://hl7.org/fhir/v2/0078"/>
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<code value="A"/>
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</coding>
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</interpretation>
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<comments value="Antibiotic treatment is recommended for patients with severe disease, bloody diarrhea, or compromised immune systems. Resistance to traditional first-line drugs like ampicillin and trimethoprim-sulfamethoxazole is common, and resistance to some other antibiotics is increasing. With this in mind, antibiotic susceptibility testing can help guide appropriate therapy. When an ampicillin- or trimethroprim-sulfamethoxazole-resistant strain is isolated, choices for therapy include fluoroquinolones, ceftriaxone, and azithromycin."/>
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<specimen>
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<reference value="Specimen/spec-uslab-example1"/>
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<display value="Blood sample"/>
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</specimen>
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<related>
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<target>
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<reference value="Observation/obs-407"/>
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<display value="Bacterial susceptibility panel (MIC)"/>
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</target>
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</related>
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</Observation>
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<?xml version="1.0" encoding="UTF-8"?>
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<Observation xmlns="http://hl7.org/fhir">
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<id value="obs-403"/>
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<text>
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<status value="generated"/>
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<div xmlns="http://www.w3.org/1999/xhtml">
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<p>
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<b>Generated Narrative with Details</b>
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</p>
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<p>
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<b>id</b>: obs-403</p>
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<p>
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<b>identifier</b>: obs-403</p>
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<p>
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<b>status</b>: final</p>
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<p>
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<b>code</b>: Bacteria susceptibility
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<span style="background: LightGoldenRodYellow ">(Details : {LOINC code "50545-3" := "50545-3", given as "Bacterial susceptibility panel in Isolate by Minimum inhibitory concentration (MIC)"})</span>
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</p>
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<p>
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<b>subject</b>:
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<a href="Patient/patient-uslab-example1">Todd Lerr</a>
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</p>
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<p>
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<b>effective</b>: 12/5/2014</p>
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<p>
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<b>issued</b>: 12/6/2014 3:42:15 PM</p>
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<p>
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<b>specimen</b>:
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<a href="Specimen/spec-uslab-example1">Blood sample</a>
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</p>
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</div>
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</text>
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<identifier>
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<system value="http://lis.acmelabs.org/identifiers/labtestresult"/>
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<value value="obs-403"/>
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</identifier>
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<status value="final"/>
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<!-- EH : The local and /or LOINC test codes go here -->
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<code>
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<!-- EH: LOINC code goes here -->
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<coding>
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<system value="http://loinc.org"/>
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<code value="50545-3"/>
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<display value="Bacterial susceptibility panel in Isolate by Minimum inhibitory concentration (MIC)"/>
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<!-- EH: Local code goes here -->
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</coding>
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<text value="Bacteria susceptibility"/>
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</code>
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<subject>
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<reference value="Patient/patient-uslab-example1"/>
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<display value="Todd Lerr"/>
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</subject>
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<effectiveDateTime value="2014-12-05"/>
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<!-- EH: Showing dateTime to ss with TZO although only needed to Day -->
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<issued value="2014-12-06T15:42:15-08:00"/>
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<!-- no results since is a nested panel -->
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<!-- eH dataabsent reason would go here if valueQuantity was empty e.g.: <dataAbsentReason value="error"/> -->
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<specimen>
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<reference value="Specimen/spec-uslab-example1"/>
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<display value="Blood sample"/>
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</specimen>
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<related>
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<type value="has-member"/>
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<target>
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<reference value="Observation/obs-404"/>
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<display value="Ampicillin MIC"/>
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</target>
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</related>
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<related>
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<type value="has-member"/>
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<target>
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<reference value="Observation/obs-405"/>
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<display value="Gentamicin MIC"/>
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</target>
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</related>
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<related>
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<type value="has-member"/>
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<target>
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<reference value="Observation/obs-406"/>
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<display value="Ciprofloxacin MIC"/>
|
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</target>
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</related>
|
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</Observation>
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@@ -0,0 +1,84 @@
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<?xml version="1.0" encoding="UTF-8"?>
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|
+
<Observation xmlns="http://hl7.org/fhir">
|
3
|
+
<id value="obs-404"/>
|
4
|
+
<text>
|
5
|
+
<status value="generated"/>
|
6
|
+
<div xmlns="http://www.w3.org/1999/xhtml">
|
7
|
+
<p>
|
8
|
+
<b>Generated Narrative with Details</b>
|
9
|
+
</p>
|
10
|
+
<p>
|
11
|
+
<b>id</b>: obs-404</p>
|
12
|
+
<p>
|
13
|
+
<b>identifier</b>: obs-404</p>
|
14
|
+
<p>
|
15
|
+
<b>status</b>: final</p>
|
16
|
+
<p>
|
17
|
+
<b>code</b>: Ampicillin (MIC)
|
18
|
+
<span style="background: LightGoldenRodYellow ">(Details : {LOINC code "28-1" := "28-1", given as "Ampicillin [Susceptibility] by Minimum inhibitory concentration (MIC)"})</span>
|
19
|
+
</p>
|
20
|
+
<p>
|
21
|
+
<b>subject</b>:
|
22
|
+
<a href="Patient/patient-uslab-example1">Todd Lerr</a>
|
23
|
+
</p>
|
24
|
+
<p>
|
25
|
+
<b>effective</b>: 12/5/2014</p>
|
26
|
+
<p>
|
27
|
+
<b>issued</b>: 12/6/2014 3:42:15 PM</p>
|
28
|
+
<p>
|
29
|
+
<b>value</b>: <0.06ug/mL
|
30
|
+
<span style="background: LightGoldenRodYellow ">(Details: http://unitsofmeasure.org code ug/mL := "ug/mL")</span>
|
31
|
+
</p>
|
32
|
+
<p>
|
33
|
+
<b>interpretation</b>: Susceptible
|
34
|
+
<span style="background: LightGoldenRodYellow ">(Details : {http://hl7.org/fhir/v2/0078 code "S" := "Susceptible)</span>
|
35
|
+
</p>
|
36
|
+
<p>
|
37
|
+
<b>specimen</b>:
|
38
|
+
<a href="Specimen/spec-uslab-example1">Blood sample</a>
|
39
|
+
</p>
|
40
|
+
</div>
|
41
|
+
</text>
|
42
|
+
<identifier>
|
43
|
+
<system value="http://lis.acmelabs.org/identifiers/labtestresult"/>
|
44
|
+
<value value="obs-404"/>
|
45
|
+
</identifier>
|
46
|
+
<status value="final"/>
|
47
|
+
<!-- EH : The local and /or LOINC test codes go here -->
|
48
|
+
<code>
|
49
|
+
<!-- EH: LOINC code goes here -->
|
50
|
+
<coding>
|
51
|
+
<system value="http://loinc.org"/>
|
52
|
+
<code value="28-1"/>
|
53
|
+
<display value="Ampicillin [Susceptibility] by Minimum inhibitory concentration (MIC)"/>
|
54
|
+
<!-- EH: Local code goes here -->
|
55
|
+
</coding>
|
56
|
+
<text value="Ampicillin (MIC)"/>
|
57
|
+
</code>
|
58
|
+
<subject>
|
59
|
+
<reference value="Patient/patient-uslab-example1"/>
|
60
|
+
<display value="Todd Lerr"/>
|
61
|
+
</subject>
|
62
|
+
<effectiveDateTime value="2014-12-05"/>
|
63
|
+
<!-- EH: Showing dateTime to ss with TZO although only needed to Day -->
|
64
|
+
<issued value="2014-12-06T15:42:15-08:00"/>
|
65
|
+
<!-- In FHIR, units may be represented twice. Once in the agreed human representation, and once in a coded form. Both is best, since it's not always possible to infer one from the other in code. When a computable unit is provided, UCUM (http://unitsofmeasure.org) is always preferred, but it doesn't provide notional units (such as "tablet"), etc. For these, something else is required (e.g. Snomed-CT) -->
|
66
|
+
<valueQuantity>
|
67
|
+
<value value="0.06"/>
|
68
|
+
<comparator value="<"/>
|
69
|
+
<unit value="ug/mL"/>
|
70
|
+
<system value="http://unitsofmeasure.org"/>
|
71
|
+
<code value="ug/mL"/>
|
72
|
+
</valueQuantity>
|
73
|
+
<!-- eH dataabsent reason would go here if valueQuantity was empty e.g.: <dataAbsentReason value="error"/> -->
|
74
|
+
<interpretation>
|
75
|
+
<coding>
|
76
|
+
<system value="http://hl7.org/fhir/v2/0078"/>
|
77
|
+
<code value="S"/>
|
78
|
+
</coding>
|
79
|
+
</interpretation>
|
80
|
+
<specimen>
|
81
|
+
<reference value="Specimen/spec-uslab-example1"/>
|
82
|
+
<display value="Blood sample"/>
|
83
|
+
</specimen>
|
84
|
+
</Observation>
|
@@ -0,0 +1,83 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<Observation xmlns="http://hl7.org/fhir">
|
3
|
+
<id value="obs-405"/>
|
4
|
+
<text>
|
5
|
+
<status value="generated"/>
|
6
|
+
<div xmlns="http://www.w3.org/1999/xhtml">
|
7
|
+
<p>
|
8
|
+
<b>Generated Narrative with Details</b>
|
9
|
+
</p>
|
10
|
+
<p>
|
11
|
+
<b>id</b>: obs-405</p>
|
12
|
+
<p>
|
13
|
+
<b>identifier</b>: obs-405</p>
|
14
|
+
<p>
|
15
|
+
<b>status</b>: final</p>
|
16
|
+
<p>
|
17
|
+
<b>code</b>: Gentamicin (MIC)
|
18
|
+
<span style="background: LightGoldenRodYellow ">(Details : {LOINC code "267-5" := "267-5", given as "Gentamicin [Susceptibility] by Minimum inhibitory concentration (MIC)"})</span>
|
19
|
+
</p>
|
20
|
+
<p>
|
21
|
+
<b>subject</b>:
|
22
|
+
<a href="Patient/patient-uslab-example1">Todd Lerr</a>
|
23
|
+
</p>
|
24
|
+
<p>
|
25
|
+
<b>effective</b>: 12/5/2014</p>
|
26
|
+
<p>
|
27
|
+
<b>issued</b>: 12/6/2014 3:42:15 PM</p>
|
28
|
+
<p>
|
29
|
+
<b>value</b>: 0.05ug/mL
|
30
|
+
<span style="background: LightGoldenRodYellow ">(Details: http://unitsofmeasure.org code ug/mL := "ug/mL")</span>
|
31
|
+
</p>
|
32
|
+
<p>
|
33
|
+
<b>interpretation</b>: Susceptible
|
34
|
+
<span style="background: LightGoldenRodYellow ">(Details : {http://hl7.org/fhir/v2/0078 code "S" := "Susceptible)</span>
|
35
|
+
</p>
|
36
|
+
<p>
|
37
|
+
<b>specimen</b>:
|
38
|
+
<a href="Specimen/spec-uslab-example1">Blood sample</a>
|
39
|
+
</p>
|
40
|
+
</div>
|
41
|
+
</text>
|
42
|
+
<identifier>
|
43
|
+
<system value="http://lis.acmelabs.org/identifiers/labtestresult"/>
|
44
|
+
<value value="obs-405"/>
|
45
|
+
</identifier>
|
46
|
+
<status value="final"/>
|
47
|
+
<!-- EH : The local and /or LOINC test codes go here -->
|
48
|
+
<code>
|
49
|
+
<!-- EH: LOINC code goes here -->
|
50
|
+
<coding>
|
51
|
+
<system value="http://loinc.org"/>
|
52
|
+
<code value="267-5"/>
|
53
|
+
<display value="Gentamicin [Susceptibility] by Minimum inhibitory concentration (MIC)"/>
|
54
|
+
<!-- EH: Local code goes here -->
|
55
|
+
</coding>
|
56
|
+
<text value="Gentamicin (MIC)"/>
|
57
|
+
</code>
|
58
|
+
<subject>
|
59
|
+
<reference value="Patient/patient-uslab-example1"/>
|
60
|
+
<display value="Todd Lerr"/>
|
61
|
+
</subject>
|
62
|
+
<effectiveDateTime value="2014-12-05"/>
|
63
|
+
<!-- EH: Showing dateTime to ss with TZO although only needed to Day -->
|
64
|
+
<issued value="2014-12-06T15:42:15-08:00"/>
|
65
|
+
<!-- In FHIR, units may be represented twice. Once in the agreed human representation, and once in a coded form. Both is best, since it's not always possible to infer one from the other in code. When a computable unit is provided, UCUM (http://unitsofmeasure.org) is always preferred, but it doesn't provide notional units (such as "tablet"), etc. For these, something else is required (e.g. Snomed-CT) -->
|
66
|
+
<valueQuantity>
|
67
|
+
<value value="0.05"/>
|
68
|
+
<unit value="ug/mL"/>
|
69
|
+
<system value="http://unitsofmeasure.org"/>
|
70
|
+
<code value="ug/mL"/>
|
71
|
+
</valueQuantity>
|
72
|
+
<!-- eH dataabsent reason would go here if valueQuantity was empty e.g.: <dataAbsentReason value="error"/> -->
|
73
|
+
<interpretation>
|
74
|
+
<coding>
|
75
|
+
<system value="http://hl7.org/fhir/v2/0078"/>
|
76
|
+
<code value="S"/>
|
77
|
+
</coding>
|
78
|
+
</interpretation>
|
79
|
+
<specimen>
|
80
|
+
<reference value="Specimen/spec-uslab-example1"/>
|
81
|
+
<display value="Blood sample"/>
|
82
|
+
</specimen>
|
83
|
+
</Observation>
|
@@ -0,0 +1,83 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<Observation xmlns="http://hl7.org/fhir">
|
3
|
+
<id value="obs-406"/>
|
4
|
+
<text>
|
5
|
+
<status value="generated"/>
|
6
|
+
<div xmlns="http://www.w3.org/1999/xhtml">
|
7
|
+
<p>
|
8
|
+
<b>Generated Narrative with Details</b>
|
9
|
+
</p>
|
10
|
+
<p>
|
11
|
+
<b>id</b>: obs-406</p>
|
12
|
+
<p>
|
13
|
+
<b>identifier</b>: obs-406</p>
|
14
|
+
<p>
|
15
|
+
<b>status</b>: final</p>
|
16
|
+
<p>
|
17
|
+
<b>code</b>: Ciprofloxacin (MIC)
|
18
|
+
<span style="background: LightGoldenRodYellow ">(Details : {LOINC code "185-9" := "185-9", given as "Ciprofloxacin [Susceptibility] by Minimum inhibitory concentration (MIC)"})</span>
|
19
|
+
</p>
|
20
|
+
<p>
|
21
|
+
<b>subject</b>:
|
22
|
+
<a href="Patient/patient-uslab-example1">Todd Lerr</a>
|
23
|
+
</p>
|
24
|
+
<p>
|
25
|
+
<b>effective</b>: 12/5/2014</p>
|
26
|
+
<p>
|
27
|
+
<b>issued</b>: 12/6/2014 3:42:15 PM</p>
|
28
|
+
<p>
|
29
|
+
<b>value</b>: 0.05ug/mL
|
30
|
+
<span style="background: LightGoldenRodYellow ">(Details: http://unitsofmeasure.org code ug/mL := "ug/mL")</span>
|
31
|
+
</p>
|
32
|
+
<p>
|
33
|
+
<b>interpretation</b>: Susceptible
|
34
|
+
<span style="background: LightGoldenRodYellow ">(Details : {http://hl7.org/fhir/v2/0078 code "S" := "Susceptible)</span>
|
35
|
+
</p>
|
36
|
+
<p>
|
37
|
+
<b>specimen</b>:
|
38
|
+
<a href="Specimen/spec-uslab-example1">Blood sample</a>
|
39
|
+
</p>
|
40
|
+
</div>
|
41
|
+
</text>
|
42
|
+
<identifier>
|
43
|
+
<system value="http://lis.acmelabs.org/identifiers/labtestresult"/>
|
44
|
+
<value value="obs-406"/>
|
45
|
+
</identifier>
|
46
|
+
<status value="final"/>
|
47
|
+
<!-- EH : The local and /or LOINC test codes go here -->
|
48
|
+
<code>
|
49
|
+
<!-- EH: LOINC code goes here -->
|
50
|
+
<coding>
|
51
|
+
<system value="http://loinc.org"/>
|
52
|
+
<code value="185-9"/>
|
53
|
+
<display value="Ciprofloxacin [Susceptibility] by Minimum inhibitory concentration (MIC)"/>
|
54
|
+
<!-- EH: Local code goes here -->
|
55
|
+
</coding>
|
56
|
+
<text value="Ciprofloxacin (MIC)"/>
|
57
|
+
</code>
|
58
|
+
<subject>
|
59
|
+
<reference value="Patient/patient-uslab-example1"/>
|
60
|
+
<display value="Todd Lerr"/>
|
61
|
+
</subject>
|
62
|
+
<effectiveDateTime value="2014-12-05"/>
|
63
|
+
<!-- EH: Showing dateTime to ss with TZO although only needed to Day -->
|
64
|
+
<issued value="2014-12-06T15:42:15-08:00"/>
|
65
|
+
<!-- In FHIR, units may be represented twice. Once in the agreed human representation, and once in a coded form. Both is best, since it's not always possible to infer one from the other in code. When a computable unit is provided, UCUM (http://unitsofmeasure.org) is always preferred, but it doesn't provide notional units (such as "tablet"), etc. For these, something else is required (e.g. Snomed-CT) -->
|
66
|
+
<valueQuantity>
|
67
|
+
<value value="0.05"/>
|
68
|
+
<unit value="ug/mL"/>
|
69
|
+
<system value="http://unitsofmeasure.org"/>
|
70
|
+
<code value="ug/mL"/>
|
71
|
+
</valueQuantity>
|
72
|
+
<!-- eH dataabsent reason would go here if valueQuantity was empty e.g.: <dataAbsentReason value="error"/> -->
|
73
|
+
<interpretation>
|
74
|
+
<coding>
|
75
|
+
<system value="http://hl7.org/fhir/v2/0078"/>
|
76
|
+
<code value="S"/>
|
77
|
+
</coding>
|
78
|
+
</interpretation>
|
79
|
+
<specimen>
|
80
|
+
<reference value="Specimen/spec-uslab-example1"/>
|
81
|
+
<display value="Blood sample"/>
|
82
|
+
</specimen>
|
83
|
+
</Observation>
|
@@ -0,0 +1,70 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<Observation xmlns="http://hl7.org/fhir">
|
3
|
+
<id value="obs-407"/>
|
4
|
+
<text>
|
5
|
+
<status value="generated"/>
|
6
|
+
<div xmlns="http://www.w3.org/1999/xhtml">
|
7
|
+
<p>
|
8
|
+
<b>Generated Narrative with Details</b>
|
9
|
+
</p>
|
10
|
+
<p>
|
11
|
+
<b>id</b>: obs-407</p>
|
12
|
+
<p>
|
13
|
+
<b>identifier</b>: obs-407</p>
|
14
|
+
<p>
|
15
|
+
<b>status</b>: final</p>
|
16
|
+
<p>
|
17
|
+
<b>code</b>: Bacteria susceptibility
|
18
|
+
<span style="background: LightGoldenRodYellow ">(Details : {LOINC code "50545-3" := "50545-3", given as "Bacterial susceptibility panel in Isolate by Minimum inhibitory concentration (MIC)"})</span>
|
19
|
+
</p>
|
20
|
+
<p>
|
21
|
+
<b>subject</b>:
|
22
|
+
<a href="Patient/patient-uslab-example1">Todd Lerr</a>
|
23
|
+
</p>
|
24
|
+
<p>
|
25
|
+
<b>effective</b>: 12/5/2014</p>
|
26
|
+
<p>
|
27
|
+
<b>issued</b>: 12/6/2014 3:42:15 PM</p>
|
28
|
+
<p>
|
29
|
+
<b>specimen</b>:
|
30
|
+
<a href="Specimen/spec-uslab-example1">Blood sample</a>
|
31
|
+
</p>
|
32
|
+
</div>
|
33
|
+
</text>
|
34
|
+
<identifier>
|
35
|
+
<system value="http://lis.acmelabs.org/identifiers/labtestresult"/>
|
36
|
+
<value value="obs-407"/>
|
37
|
+
</identifier>
|
38
|
+
<status value="final"/>
|
39
|
+
<!-- EH : The local and /or LOINC test codes go here -->
|
40
|
+
<code>
|
41
|
+
<!-- EH: LOINC code goes here -->
|
42
|
+
<coding>
|
43
|
+
<system value="http://loinc.org"/>
|
44
|
+
<code value="50545-3"/>
|
45
|
+
<display value="Bacterial susceptibility panel in Isolate by Minimum inhibitory concentration (MIC)"/>
|
46
|
+
<!-- EH: Local code goes here -->
|
47
|
+
</coding>
|
48
|
+
<text value="Bacteria susceptibility"/>
|
49
|
+
</code>
|
50
|
+
<subject>
|
51
|
+
<reference value="Patient/patient-uslab-example1"/>
|
52
|
+
<display value="Todd Lerr"/>
|
53
|
+
</subject>
|
54
|
+
<effectiveDateTime value="2014-12-05"/>
|
55
|
+
<!-- EH: Showing dateTime to ss with TZO although only needed to Day -->
|
56
|
+
<issued value="2014-12-06T15:42:15-08:00"/>
|
57
|
+
<!-- no results since is a nested panel -->
|
58
|
+
<!-- eH dataabsent reason would go here if valueQuantity was empty e.g.: <dataAbsentReason value="error"/> -->
|
59
|
+
<specimen>
|
60
|
+
<reference value="Specimen/spec-uslab-example1"/>
|
61
|
+
<display value="Blood sample"/>
|
62
|
+
</specimen>
|
63
|
+
<related>
|
64
|
+
<type value="has-member"/>
|
65
|
+
<target>
|
66
|
+
<reference value="Observation/obs-408"/>
|
67
|
+
<display value="Trimethoprim+Sulfamethoxazole MIC"/>
|
68
|
+
</target>
|
69
|
+
</related>
|
70
|
+
</Observation>
|
@@ -0,0 +1,84 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<Observation xmlns="http://hl7.org/fhir">
|
3
|
+
<id value="obs-408"/>
|
4
|
+
<text>
|
5
|
+
<status value="generated"/>
|
6
|
+
<div xmlns="http://www.w3.org/1999/xhtml">
|
7
|
+
<p>
|
8
|
+
<b>Generated Narrative with Details</b>
|
9
|
+
</p>
|
10
|
+
<p>
|
11
|
+
<b>id</b>: obs-408</p>
|
12
|
+
<p>
|
13
|
+
<b>identifier</b>: obs-408</p>
|
14
|
+
<p>
|
15
|
+
<b>status</b>: final</p>
|
16
|
+
<p>
|
17
|
+
<b>code</b>: Trimethoprim+Sulfamethoxazole (MIC)
|
18
|
+
<span style="background: LightGoldenRodYellow ">(Details : {LOINC code "516-5" := "516-5", given as "Trimethoprim+Sulfamethoxazole [Susceptibility] by Minimum inhibitory concentration (MIC)"})</span>
|
19
|
+
</p>
|
20
|
+
<p>
|
21
|
+
<b>subject</b>:
|
22
|
+
<a href="Patient/patient-uslab-example1">Todd Lerr</a>
|
23
|
+
</p>
|
24
|
+
<p>
|
25
|
+
<b>effective</b>: 12/5/2014</p>
|
26
|
+
<p>
|
27
|
+
<b>issued</b>: 12/6/2014 3:42:15 PM</p>
|
28
|
+
<p>
|
29
|
+
<b>value</b>: <=10ug/mL
|
30
|
+
<span style="background: LightGoldenRodYellow ">(Details: http://unitsofmeasure.org code ug/mL := "ug/mL")</span>
|
31
|
+
</p>
|
32
|
+
<p>
|
33
|
+
<b>interpretation</b>: Susceptible
|
34
|
+
<span style="background: LightGoldenRodYellow ">(Details : {http://hl7.org/fhir/v2/0078 code "S" := "Susceptible)</span>
|
35
|
+
</p>
|
36
|
+
<p>
|
37
|
+
<b>specimen</b>:
|
38
|
+
<a href="Specimen/spec-uslab-example1">Blood sample</a>
|
39
|
+
</p>
|
40
|
+
</div>
|
41
|
+
</text>
|
42
|
+
<identifier>
|
43
|
+
<system value="http://lis.acmelabs.org/identifiers/labtestresult"/>
|
44
|
+
<value value="obs-408"/>
|
45
|
+
</identifier>
|
46
|
+
<status value="final"/>
|
47
|
+
<!-- EH : The local and /or LOINC test codes go here -->
|
48
|
+
<code>
|
49
|
+
<!-- EH: LOINC code goes here -->
|
50
|
+
<coding>
|
51
|
+
<system value="http://loinc.org"/>
|
52
|
+
<code value="516-5"/>
|
53
|
+
<display value="Trimethoprim+Sulfamethoxazole [Susceptibility] by Minimum inhibitory concentration (MIC)"/>
|
54
|
+
<!-- EH: Local code goes here -->
|
55
|
+
</coding>
|
56
|
+
<text value="Trimethoprim+Sulfamethoxazole (MIC)"/>
|
57
|
+
</code>
|
58
|
+
<subject>
|
59
|
+
<reference value="Patient/patient-uslab-example1"/>
|
60
|
+
<display value="Todd Lerr"/>
|
61
|
+
</subject>
|
62
|
+
<effectiveDateTime value="2014-12-05"/>
|
63
|
+
<!-- EH: Showing dateTime to ss with TZO although only needed to Day -->
|
64
|
+
<issued value="2014-12-06T15:42:15-08:00"/>
|
65
|
+
<!-- In FHIR, units may be represented twice. Once in the agreed human representation, and once in a coded form. Both is best, since it's not always possible to infer one from the other in code. When a computable unit is provided, UCUM (http://unitsofmeasure.org) is always preferred, but it doesn't provide notional units (such as "tablet"), etc. For these, something else is required (e.g. Snomed-CT) -->
|
66
|
+
<valueQuantity>
|
67
|
+
<value value="10"/>
|
68
|
+
<comparator value="<="/>
|
69
|
+
<unit value="ug/mL"/>
|
70
|
+
<system value="http://unitsofmeasure.org"/>
|
71
|
+
<code value="ug/mL"/>
|
72
|
+
</valueQuantity>
|
73
|
+
<!-- eH dataabsent reason would go here if valueQuantity was empty e.g.: <dataAbsentReason value="error"/> -->
|
74
|
+
<interpretation>
|
75
|
+
<coding>
|
76
|
+
<system value="http://hl7.org/fhir/v2/0078"/>
|
77
|
+
<code value="S"/>
|
78
|
+
</coding>
|
79
|
+
</interpretation>
|
80
|
+
<specimen>
|
81
|
+
<reference value="Specimen/spec-uslab-example1"/>
|
82
|
+
<display value="Blood sample"/>
|
83
|
+
</specimen>
|
84
|
+
</Observation>
|