plan_executor 1.0.2
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- checksums.yaml +7 -0
- data/.gitignore +44 -0
- data/.simplecov +16 -0
- data/.travis.yml +13 -0
- data/Gemfile +26 -0
- data/Gemfile.lock +197 -0
- data/LICENSE +201 -0
- data/README.md +126 -0
- data/Rakefile +25 -0
- data/fixtures/daf/conformance-daf-query-responder.xml +1471 -0
- data/fixtures/diagnostic_order/do-100.xml +64 -0
- data/fixtures/diagnostic_order/do-200.xml +121 -0
- data/fixtures/diagnostic_order/do-300.xml +91 -0
- data/fixtures/diagnostic_order/do-400.xml +88 -0
- data/fixtures/diagnostic_report/dr-100.xml +96 -0
- data/fixtures/diagnostic_report/dr-200.xml +125 -0
- data/fixtures/diagnostic_report/dr-300.xml +132 -0
- data/fixtures/diagnostic_report/dr-400.xml +121 -0
- data/fixtures/financial/claim-example-average.xml +168 -0
- data/fixtures/financial/claim-example-simple.xml +67 -0
- data/fixtures/observation/obs-100.xml +58 -0
- data/fixtures/observation/obs-101.xml +58 -0
- data/fixtures/observation/obs-200.xml +125 -0
- data/fixtures/observation/obs-300.xml +106 -0
- data/fixtures/observation/obs-301.xml +106 -0
- data/fixtures/observation/obs-302.xml +106 -0
- data/fixtures/observation/obs-303.xml +106 -0
- data/fixtures/observation/obs-304.xml +106 -0
- data/fixtures/observation/obs-400.xml +87 -0
- data/fixtures/observation/obs-401.xml +95 -0
- data/fixtures/observation/obs-402.xml +95 -0
- data/fixtures/observation/obs-403.xml +84 -0
- data/fixtures/observation/obs-404.xml +84 -0
- data/fixtures/observation/obs-405.xml +83 -0
- data/fixtures/observation/obs-406.xml +83 -0
- data/fixtures/observation/obs-407.xml +70 -0
- data/fixtures/observation/obs-408.xml +84 -0
- data/fixtures/observation/obs-uslab-example5.xml +102 -0
- data/fixtures/order/order-100.xml +61 -0
- data/fixtures/order/order-200.xml +61 -0
- data/fixtures/order/order-300.xml +61 -0
- data/fixtures/order/order-400.xml +61 -0
- data/fixtures/order_response/ordresp-100.xml +79 -0
- data/fixtures/order_response/ordresp-110.xml +79 -0
- data/fixtures/order_response/ordresp-200.xml +79 -0
- data/fixtures/order_response/ordresp-210.xml +79 -0
- data/fixtures/order_response/ordresp-300.xml +79 -0
- data/fixtures/order_response/ordresp-310.xml +79 -0
- data/fixtures/order_response/ordresp-400.xml +79 -0
- data/fixtures/order_response/ordresp-410.xml +79 -0
- data/fixtures/organization/org-uslab-example3.xml +49 -0
- data/fixtures/patient/patient-example-updated.xml +140 -0
- data/fixtures/patient/patient-example-us-extensions(us01).xml +81 -0
- data/fixtures/patient/patient-example.xml +132 -0
- data/fixtures/patient/patient-format-example.xml +101 -0
- data/fixtures/patient/patient-minimal.xml +9 -0
- data/fixtures/patient/patient-uslab-example1.xml +44 -0
- data/fixtures/practitioner/pract-uslab-example1.xml +18 -0
- data/fixtures/practitioner/pract-uslab-example3.xml +36 -0
- data/fixtures/record/condition-example-f201-fever.xml +63 -0
- data/fixtures/record/condition-example-f205-infection.xml +20 -0
- data/fixtures/record/diagnosticreport-example-f201-brainct.xml +18 -0
- data/fixtures/record/encounter-example-f201-20130404.xml +17 -0
- data/fixtures/record/encounter-example-f202-20130128.xml +17 -0
- data/fixtures/record/observation-example-f202-temperature.xml +60 -0
- data/fixtures/record/organization-example-f201-aumc.xml +5 -0
- data/fixtures/record/organization-example-f203-bumc.xml +5 -0
- data/fixtures/record/patient-example-f201-roel.xml +16 -0
- data/fixtures/record/practitioner-example-f201-ab.xml +14 -0
- data/fixtures/record/procedure-example-f201-tpf.xml +23 -0
- data/fixtures/scheduling/appointment-simple.xml +24 -0
- data/fixtures/scheduling/appointmentresponse-patient-simple.xml +12 -0
- data/fixtures/scheduling/appointmentresponse-practitioner-simple.xml +12 -0
- data/fixtures/scheduling/practitioner-simple.xml +10 -0
- data/fixtures/scheduling/schedule-simple.xml +12 -0
- data/fixtures/scheduling/slot-simple.xml +10 -0
- data/fixtures/specimen/spec-100.xml +65 -0
- data/fixtures/specimen/spec-400.xml +70 -0
- data/fixtures/specimen/spec-uslab-example1.xml +82 -0
- data/fixtures/validation/observation.profile.xml +2045 -0
- data/fixtures/validation/observations/observation-example(example).xml +50 -0
- data/lib/FHIR_structure.json +529 -0
- data/lib/daf_resource_generator.rb +94 -0
- data/lib/data/fhir_structure.rb +8 -0
- data/lib/data/resources.rb +138 -0
- data/lib/executor.rb +56 -0
- data/lib/ext/client.rb +27 -0
- data/lib/ext/client_reply.rb +19 -0
- data/lib/plan_executor.rb +31 -0
- data/lib/resource_generator.rb +656 -0
- data/lib/tasks/tasks.rake +329 -0
- data/lib/tasks/templates/summary.html.erb +163 -0
- data/lib/test_result.rb +69 -0
- data/lib/tests/assertions.rb +261 -0
- data/lib/tests/base_test.rb +117 -0
- data/lib/tests/suites/argonaut_resprint_1_test.rb +260 -0
- data/lib/tests/suites/argonaut_resprint_2_test.rb +369 -0
- data/lib/tests/suites/argonaut_resprint_3_test.rb +309 -0
- data/lib/tests/suites/argonaut_sprint_1_test.rb +187 -0
- data/lib/tests/suites/argonaut_sprint_2_test.rb +115 -0
- data/lib/tests/suites/argonaut_sprint_3_test.rb +208 -0
- data/lib/tests/suites/argonaut_sprint_4_test.rb +335 -0
- data/lib/tests/suites/argonaut_sprint_5_test.rb +196 -0
- data/lib/tests/suites/argonaut_sprint_6_test.rb +243 -0
- data/lib/tests/suites/argonaut_sprint_7_test.rb +161 -0
- data/lib/tests/suites/base_suite.rb +116 -0
- data/lib/tests/suites/connectathon_audit_track.rb +354 -0
- data/lib/tests/suites/connectathon_fetch_patient_record.rb +443 -0
- data/lib/tests/suites/connectathon_financial_track.rb +380 -0
- data/lib/tests/suites/connectathon_lab_order_track.rb +239 -0
- data/lib/tests/suites/connectathon_patient_track.rb +364 -0
- data/lib/tests/suites/connectathon_profile_validation.rb +101 -0
- data/lib/tests/suites/connectathon_scheduling_track.rb +266 -0
- data/lib/tests/suites/connectathon_terminology_track.rb +242 -0
- data/lib/tests/suites/daf_profiles_test.rb +431 -0
- data/lib/tests/suites/format_test.rb +453 -0
- data/lib/tests/suites/history_test.rb +311 -0
- data/lib/tests/suites/read_test.rb +104 -0
- data/lib/tests/suites/resource_test.rb +553 -0
- data/lib/tests/suites/search_test.rb +219 -0
- data/lib/tests/suites/search_test_robust.rb +172 -0
- data/lib/tests/suites/sprinkler_search_test.rb +660 -0
- data/lib/tests/suites/suite_engine.rb +114 -0
- data/lib/tests/suites/transaction_test.rb +571 -0
- data/lib/tests/testscripts/base_testscript.rb +480 -0
- data/lib/tests/testscripts/testscript_engine.rb +81 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/Client Assigned Id/track1-patient-base-client-id-json.xml +348 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/Client Assigned Id/track1-patient-bonus-client-id-json.xml +420 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/Server Assigned Id/track1-patient-base-server-id-json.xml +352 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/_reference/conformance/PatientConformance.xml +34 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/_reference/resources/patient-create-PeterChalmers-min.json +45 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/_reference/resources/patient-create-PeterChalmers-min.xml +26 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track11-SDC/_reference/C-CDA_R2-1_CCD-ussg.xml +3414 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/Lookup/track2-ts-suite5-loinc-lookup-xml.xml +224 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/README.html +85 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/Translate/track2-ts-suite6-translate-xml.xml +224 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/Validate-code/Client Assigned Id/track2-ts-suite3-validate-code-client-id.xml +1807 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ConceptMapSuite6Conformance.xml +11 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ValueSetSuite1Conformance.xml +17 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ValueSetSuite2Conformance.xml +17 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ValueSetSuite3Conformance.xml +14 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ValueSetSuite4Conformance.xml +14 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ValueSetSuite5Conformance.xml +11 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/conformance/DecisionSupportServiceModule-Evaluate.xml +17 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-incomplete-request-payload.xml +26 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-incomplete-response-min-payload.xml +7 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-malformed-request-payload.xml +28 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-request-payload.xml +28 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-response-min-payload.xml +7 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-response-payload.xml +332 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-unauthorized-request-payload.xml +28 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-unauthorized-response-payload.xml +8 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/gao-assessment-request-payload.xml +176 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/gao-assessment-response-payload-min.xml +32 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/gao-assessment-response-payload.xml +80 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/track3-cds-evaluate-cdc-immunization.xml +290 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/track3-cds-evaluate-gao-profile.xml +110 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track6-FHIR-Genomics/Client_Assigned_Id/TestScript_FHIR-Genomics.xml +170 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track6-FHIR-Genomics/_reference/resources/sequence-example-1.xml +31 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track6-FHIR-Genomics/_reference/resources/sequence-example-2.xml +31 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Actors.png +0 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Client_Assigned_Id/track7-laborder100-xml.xml +590 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Client_Assigned_Id/track7-laborder200-xml.xml +587 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Client_Assigned_Id/track7-laborder300-xml.xml +612 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Client_Assigned_Id/track7-laborder400-xml.xml +635 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Peer-to-Peer/track7-laborder100-peer2peer-xml.xml +752 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Thumbs.db +0 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/conformance/LabOrderLabReport-CreateDeleteReadUpdate.xml +187 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/conformance/html.xslt +45 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-100-update.xml +64 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-100.xml +64 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-200-update.xml +121 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-200.xml +121 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-300-update.xml +91 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-300.xml +91 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-400-update.xml +88 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-400.xml +88 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticReport/dr-100.xml +96 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticReport/dr-200.xml +125 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticReport/dr-300.xml +132 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticReport/dr-400.xml +121 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-100.xml +58 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-101.xml +58 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-200.xml +125 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-300.xml +106 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-301.xml +106 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-302.xml +106 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-303.xml +106 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-304.xml +106 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-400.xml +87 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-401.xml +95 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-402.xml +95 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-403.xml +84 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-404.xml +84 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-405.xml +83 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-406.xml +83 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-407.xml +70 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-408.xml +84 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-uslab-example5.xml +102 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Order/order-100.xml +61 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Order/order-200.xml +61 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Order/order-300.xml +61 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Order/order-400.xml +61 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-100.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-110.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-200.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-210.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-300.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-310.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-400.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-410.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Organization/org-uslab-example3.xml +49 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Patient/patient-uslab-example1.xml +44 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Practitioner/pract-uslab-example1.xml +18 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Practitioner/pract-uslab-example3.xml +36 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/Thumbs.db +0 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/spec-100.xml +65 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/spec-400.xml +70 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/spec-uslab-example1.xml +82 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 1 Document.txt +122 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 2 Document.txt +103 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 3 Document.txt +201 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 4 Document.txt +310 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/conformance/MedicationStatementCreate.xml +11 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/conformance/PatientSearchType.xml +15 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/resources/medicationstatement-create.json +39 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/resources/medicationstatement-patch.json +3 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-medicationstatement-json-if-match.xml +321 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-medicationstatement-json.xml +303 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-peer2peer-patient-json.xml +235 -0
- data/plan_executor.gemspec +14 -0
- data/test/fixtures/diagnostic_bundle.xml +51 -0
- data/test/fixtures/lab_results_bundle.xml +49 -0
- data/test/fixtures/observation_bundle.json +61 -0
- data/test/fixtures/testscript-example.xml +202 -0
- data/test/fixtures/testscript-history.xml +143 -0
- data/test/fixtures/testscript-readtest.xml +272 -0
- data/test/fixtures/testscript-search.xml +282 -0
- data/test/fixtures/testscript-update.xml +147 -0
- data/test/fixtures/vital_signs_bundle.xml +117 -0
- data/test/test_helper.rb +8 -0
- data/test/unit/argonaut_sprint6_test.rb +31 -0
- data/test/unit/argonaut_sprint7_test.rb +21 -0
- data/test/unit/basic_test.rb +27 -0
- data/test/unit/fetch_patient_record_test.rb +357 -0
- data/test/unit/financial_test.rb +41 -0
- data/test/unit/fixtures_test.rb +45 -0
- data/test/unit/metadata_test.rb +33 -0
- metadata +394 -0
@@ -0,0 +1,79 @@
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<?xml version="1.0" encoding="UTF-8"?>
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<OrderResponse xmlns="http://hl7.org/fhir">
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<id value="ordresp-300"/>
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<text>
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<status value="generated"/>
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<div xmlns="http://www.w3.org/1999/xhtml">
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<p>
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<b>Generated Narrative with Details</b>
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</p>
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<p>
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<b>id</b>: ordresp-300</p>
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<p>
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<b>identifier</b>: FILL = ordresp-300</p>
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<p>
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<b>request</b>:
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<a href="Order/order-300">Order/order-300</a>
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</p>
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<p>
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<b>date</b>: 12/15/2015 7:36:25 AM</p>
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<p>
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<b>who</b>:
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<a href="Organization/org-uslab-example3">Acme Labs</a>
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</p>
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<p>
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<b>orderStatus</b>: accepted</p>
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</div>
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</text>
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<identifier>
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<type>
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<coding>
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<code value="http://hl7.org/fhir/identifier-type"/>
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<display value="FILL"/>
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</coding>
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</type>
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<system value="http://lis.acmelabs.org/identifiers"/>
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<value value="ordresp-300"/>
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</identifier>
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<!--
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this should be a response to the example request,
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but we don't yet have all the resource types in
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place to make this happen
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So for now, although the Order message referred to
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here contains a prescription resource, this example
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response contains lab reports
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-->
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<request>
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<reference value="Order/order-300"/>
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</request>
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<date value="2015-12-15T07:36:25Z"/>
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<!-- made by the lab -->
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<who>
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<reference value="Organization/org-uslab-example3"/>
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<display value="Acme Labs"/>
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</who>
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<!--
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there's a loose relationship between the status of
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the order, and status information on the fulfillment
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resources. For instance, in the case of a lab, it probably
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wouldn't make sense to claim that the response is anything
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but completed when the report is marked as "final" (as it is
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in this case). However due to the diversity of business
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practices in the order/fulfillment cycle, there's no formal
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rules about what is allowed
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-->
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<orderStatus value="accepted"/>
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<!--
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the lab report that the lab provides as a token of its
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fulfillment for this order
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In the case of a lab order, the report is usually the real/only
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outcome. However in a case such as a medication administration,
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the actual administration is the fulfillment - the MedicationAdministration
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resource is only a token of the fulfillment of the order
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-->
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<!--<fulfillment>
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<reference value="DiagnosticReport/101"/>
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</fulfillment>-->
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</OrderResponse>
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<?xml version="1.0" encoding="UTF-8"?>
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<OrderResponse xmlns="http://hl7.org/fhir">
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<id value="ordresp-310"/>
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<text>
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<status value="generated"/>
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<div xmlns="http://www.w3.org/1999/xhtml">
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<p>
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<b>Generated Narrative with Details</b>
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</p>
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<p>
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<b>id</b>: ordresp-310</p>
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<p>
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<b>identifier</b>: FILL = ordresp-310</p>
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<p>
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<b>request</b>:
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<a href="Order/order-300">Order/order-300</a>
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</p>
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<p>
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<b>date</b>: 12/15/2015 7:36:25 AM</p>
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<p>
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<b>who</b>:
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<a href="Organization/org-uslab-example3">Acme Labs</a>
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</p>
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<p>
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<b>orderStatus</b>: completed</p>
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</div>
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</text>
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<identifier>
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<type>
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<coding>
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<code value="http://hl7.org/fhir/identifier-type"/>
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<display value="FILL"/>
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</coding>
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</type>
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<system value="http://lis.acmelabs.org/identifiers"/>
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<value value="ordresp-310"/>
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</identifier>
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<!--
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this should be a response to the example request,
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but we don't yet have all the resource types in
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place to make this happen
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So for now, although the Order message referred to
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here contains a prescription resource, this example
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response contains lab reports
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-->
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<request>
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<reference value="Order/order-300"/>
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</request>
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<date value="2015-12-15T07:36:25Z"/>
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<!-- made by the lab -->
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<who>
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<reference value="Organization/org-uslab-example3"/>
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<display value="Acme Labs"/>
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</who>
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<!--
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there's a loose relationship between the status of
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the order, and status information on the fulfillment
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resources. For instance, in the case of a lab, it probably
|
60
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wouldn't make sense to claim that the response is anything
|
61
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but completed when the report is marked as "final" (as it is
|
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in this case). However due to the diversity of business
|
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practices in the order/fulfillment cycle, there's no formal
|
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rules about what is allowed
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-->
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<orderStatus value="completed"/>
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<!--
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the lab report that the lab provides as a token of its
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fulfillment for this order
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|
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In the case of a lab order, the report is usually the real/only
|
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outcome. However in a case such as a medication administration,
|
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the actual administration is the fulfillment - the MedicationAdministration
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resource is only a token of the fulfillment of the order
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-->
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<!--<fulfillment>
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<reference value="DiagnosticReport/101"/>
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</fulfillment>-->
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</OrderResponse>
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<?xml version="1.0" encoding="UTF-8"?>
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<OrderResponse xmlns="http://hl7.org/fhir">
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<id value="ordresp-400"/>
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<text>
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<status value="generated"/>
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<div xmlns="http://www.w3.org/1999/xhtml">
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<p>
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<b>Generated Narrative with Details</b>
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</p>
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<p>
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<b>id</b>: ordresp-400</p>
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<p>
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<b>identifier</b>: FILL = ordresp-400</p>
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<p>
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<b>request</b>:
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<a href="Order/order-400">Order/order-400</a>
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</p>
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<p>
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<b>date</b>: 12/15/2015 7:36:25 AM</p>
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<p>
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<b>who</b>:
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<a href="Organization/org-uslab-example3">Acme Labs</a>
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</p>
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<p>
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<b>orderStatus</b>: accepted</p>
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</div>
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</text>
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<identifier>
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<type>
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<coding>
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<code value="http://hl7.org/fhir/identifier-type"/>
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<display value="FILL"/>
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</coding>
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</type>
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<system value="http://lis.acmelabs.org/identifiers"/>
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<value value="ordresp-400"/>
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</identifier>
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<!--
|
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this should be a response to the example request,
|
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but we don't yet have all the resource types in
|
41
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place to make this happen
|
42
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|
43
|
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So for now, although the Order message referred to
|
44
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here contains a prescription resource, this example
|
45
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response contains lab reports
|
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-->
|
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<request>
|
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<reference value="Order/order-400"/>
|
49
|
+
</request>
|
50
|
+
<date value="2015-12-15T07:36:25Z"/>
|
51
|
+
<!-- made by the lab -->
|
52
|
+
<who>
|
53
|
+
<reference value="Organization/org-uslab-example3"/>
|
54
|
+
<display value="Acme Labs"/>
|
55
|
+
</who>
|
56
|
+
<!--
|
57
|
+
there's a loose relationship between the status of
|
58
|
+
the order, and status information on the fulfillment
|
59
|
+
resources. For instance, in the case of a lab, it probably
|
60
|
+
wouldn't make sense to claim that the response is anything
|
61
|
+
but completed when the report is marked as "final" (as it is
|
62
|
+
in this case). However due to the diversity of business
|
63
|
+
practices in the order/fulfillment cycle, there's no formal
|
64
|
+
rules about what is allowed
|
65
|
+
-->
|
66
|
+
<orderStatus value="accepted"/>
|
67
|
+
<!--
|
68
|
+
the lab report that the lab provides as a token of its
|
69
|
+
fulfillment for this order
|
70
|
+
|
71
|
+
In the case of a lab order, the report is usually the real/only
|
72
|
+
outcome. However in a case such as a medication administration,
|
73
|
+
the actual administration is the fulfillment - the MedicationAdministration
|
74
|
+
resource is only a token of the fulfillment of the order
|
75
|
+
-->
|
76
|
+
<!--<fulfillment>
|
77
|
+
<reference value="DiagnosticReport/101"/>
|
78
|
+
</fulfillment>-->
|
79
|
+
</OrderResponse>
|
@@ -0,0 +1,79 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<OrderResponse xmlns="http://hl7.org/fhir">
|
3
|
+
<id value="ordresp-410"/>
|
4
|
+
<text>
|
5
|
+
<status value="generated"/>
|
6
|
+
<div xmlns="http://www.w3.org/1999/xhtml">
|
7
|
+
<p>
|
8
|
+
<b>Generated Narrative with Details</b>
|
9
|
+
</p>
|
10
|
+
<p>
|
11
|
+
<b>id</b>: ordresp-410</p>
|
12
|
+
<p>
|
13
|
+
<b>identifier</b>: FILL = ordresp-410</p>
|
14
|
+
<p>
|
15
|
+
<b>request</b>:
|
16
|
+
<a href="Order/order-400">Order/order-400</a>
|
17
|
+
</p>
|
18
|
+
<p>
|
19
|
+
<b>date</b>: 12/15/2015 7:36:25 AM</p>
|
20
|
+
<p>
|
21
|
+
<b>who</b>:
|
22
|
+
<a href="Organization/org-uslab-example3">Acme Labs</a>
|
23
|
+
</p>
|
24
|
+
<p>
|
25
|
+
<b>orderStatus</b>: completed</p>
|
26
|
+
</div>
|
27
|
+
</text>
|
28
|
+
<identifier>
|
29
|
+
<type>
|
30
|
+
<coding>
|
31
|
+
<code value="http://hl7.org/fhir/identifier-type"/>
|
32
|
+
<display value="FILL"/>
|
33
|
+
</coding>
|
34
|
+
</type>
|
35
|
+
<system value="http://lis.acmelabs.org/identifiers"/>
|
36
|
+
<value value="ordresp-410"/>
|
37
|
+
</identifier>
|
38
|
+
<!--
|
39
|
+
this should be a response to the example request,
|
40
|
+
but we don't yet have all the resource types in
|
41
|
+
place to make this happen
|
42
|
+
|
43
|
+
So for now, although the Order message referred to
|
44
|
+
here contains a prescription resource, this example
|
45
|
+
response contains lab reports
|
46
|
+
-->
|
47
|
+
<request>
|
48
|
+
<reference value="Order/order-400"/>
|
49
|
+
</request>
|
50
|
+
<date value="2015-12-15T07:36:25Z"/>
|
51
|
+
<!-- made by the lab -->
|
52
|
+
<who>
|
53
|
+
<reference value="Organization/org-uslab-example3"/>
|
54
|
+
<display value="Acme Labs"/>
|
55
|
+
</who>
|
56
|
+
<!--
|
57
|
+
there's a loose relationship between the status of
|
58
|
+
the order, and status information on the fulfillment
|
59
|
+
resources. For instance, in the case of a lab, it probably
|
60
|
+
wouldn't make sense to claim that the response is anything
|
61
|
+
but completed when the report is marked as "final" (as it is
|
62
|
+
in this case). However due to the diversity of business
|
63
|
+
practices in the order/fulfillment cycle, there's no formal
|
64
|
+
rules about what is allowed
|
65
|
+
-->
|
66
|
+
<orderStatus value="completed"/>
|
67
|
+
<!--
|
68
|
+
the lab report that the lab provides as a token of its
|
69
|
+
fulfillment for this order
|
70
|
+
|
71
|
+
In the case of a lab order, the report is usually the real/only
|
72
|
+
outcome. However in a case such as a medication administration,
|
73
|
+
the actual administration is the fulfillment - the MedicationAdministration
|
74
|
+
resource is only a token of the fulfillment of the order
|
75
|
+
-->
|
76
|
+
<!--<fulfillment>
|
77
|
+
<reference value="DiagnosticReport/101"/>
|
78
|
+
</fulfillment>-->
|
79
|
+
</OrderResponse>
|
@@ -0,0 +1,49 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<Organization xmlns="http://hl7.org/fhir">
|
3
|
+
<id value="org-uslab-example3"/>
|
4
|
+
<text>
|
5
|
+
<status value="generated"/>
|
6
|
+
<div xmlns="http://www.w3.org/1999/xhtml">
|
7
|
+
<p>
|
8
|
+
<b>Generated Narrative with Details</b>
|
9
|
+
</p>
|
10
|
+
<p>
|
11
|
+
<b>id</b>: org-uslab-example3</p>
|
12
|
+
<p>
|
13
|
+
<b>identifier</b>: 01D1111111 (official)</p>
|
14
|
+
<p>
|
15
|
+
<b>name</b>: Acme Labs</p>
|
16
|
+
<p>
|
17
|
+
<b>address</b>: Firstcare Way Building 2 Harrisburg PA 42043 USA (work)</p>
|
18
|
+
</div>
|
19
|
+
</text>
|
20
|
+
<identifier>
|
21
|
+
<use value="official"/>
|
22
|
+
<system value="http://www.cms.gov/Regulations-and-Guidance/Legislation/CLIA/index.html"/>
|
23
|
+
<!-- CLIA -->
|
24
|
+
<value value="01D1111111"/>
|
25
|
+
</identifier>
|
26
|
+
<name value="Acme Labs"/>
|
27
|
+
<address>
|
28
|
+
<!-- EH extension for us county -->
|
29
|
+
<extension url="http://hl7.org/fhir/StructureDefinition/us-core-county">
|
30
|
+
<valueString value="42043"/>
|
31
|
+
</extension>
|
32
|
+
<use value="work"/>
|
33
|
+
<line value="Firstcare Way"/>
|
34
|
+
<line value="Building 2"/>
|
35
|
+
<city value="Harrisburg"/>
|
36
|
+
<state value="PA"/>
|
37
|
+
<postalCode value="42043"/>
|
38
|
+
<country value="USA"/>
|
39
|
+
</address>
|
40
|
+
<contact>
|
41
|
+
<name>
|
42
|
+
<family value="House"/>
|
43
|
+
<given value="Gregory"/>
|
44
|
+
<given value="F"/>
|
45
|
+
<prefix value="Dr"/>
|
46
|
+
<suffix value="PhD"/>
|
47
|
+
</name>
|
48
|
+
</contact>
|
49
|
+
</Organization>
|
@@ -0,0 +1,44 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?><Patient xmlns="http://hl7.org/fhir">
|
2
|
+
<id value="patient-uslab-example1"/>
|
3
|
+
<text><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: patient-uslab-example1</p><p><b>identifier</b>: 18547545 (USUAL)</p><p><b>name</b>: Todd G. Lerr (OFFICIAL)</p><p><b>gender</b>: male</p><p><b>birthDate</b>: Jun 7, 2012</p><p><b>deceased</b>: false</p><p><b>address</b>: 123 North 102nd Street Apt 4d Harrisburg PA 17102 USA (HOME)</p></div></text><extension url="http://hl7.org/fhir/StructureDefinition/us-core-race">
|
4
|
+
<valueCodeableConcept>
|
5
|
+
<coding>
|
6
|
+
<code value="2106-3"/>
|
7
|
+
</coding>
|
8
|
+
</valueCodeableConcept>
|
9
|
+
</extension>
|
10
|
+
<extension url="http://hl7.org/fhir/StructureDefinition/us-core-ethnicity">
|
11
|
+
<valueCodeableConcept>
|
12
|
+
<coding>
|
13
|
+
<code value="2135-2"/>
|
14
|
+
</coding>
|
15
|
+
</valueCodeableConcept>
|
16
|
+
</extension>
|
17
|
+
<!-- EH: limit to single identifier that orderer can match to patient system can be URL -->
|
18
|
+
<identifier>
|
19
|
+
<use value="usual"/>
|
20
|
+
<system value="urn:oid:2.16.840.1.113883.3.72.5.30.2"/>
|
21
|
+
<value value="18547545"/>
|
22
|
+
</identifier>
|
23
|
+
<!-- name use limited to official and anonymous -->
|
24
|
+
<name>
|
25
|
+
<use value="official"/>
|
26
|
+
<family value="Lerr"/>
|
27
|
+
<given value="Todd"/>
|
28
|
+
<given value="G."/>
|
29
|
+
<suffix value="Jr"/>
|
30
|
+
</name>
|
31
|
+
<!-- use FHIR code system for male / female -->
|
32
|
+
<gender value="male"/>
|
33
|
+
<birthDate value="2012-06-07"/>
|
34
|
+
<deceasedBoolean value="false"/>
|
35
|
+
<address>
|
36
|
+
<use value="home"/>
|
37
|
+
<line value="123 North 102nd Street"/>
|
38
|
+
<line value="Apt 4d"/>
|
39
|
+
<city value="Harrisburg"/>
|
40
|
+
<state value="PA"/>
|
41
|
+
<postalCode value="17102"/>
|
42
|
+
<country value="USA"/>
|
43
|
+
</address>
|
44
|
+
</Patient>
|
@@ -0,0 +1,18 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?><Practitioner xmlns="http://hl7.org/fhir">
|
2
|
+
<id value="pract-uslab-example1"/>
|
3
|
+
<text><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: pract-uslab-example1</p><p><b>identifier</b>: 4444444445 (OFFICIAL)</p><p><b>name</b>: Leanard T Bloodraw </p><p><b>telecom</b>: ph: (555)7771234 ext.11</p></div></text><identifier>
|
4
|
+
<use value="official"/>
|
5
|
+
<system value="http://hl7.org/fhir/sid/us-npi"/> <!-- NPI -->
|
6
|
+
<value value="4444444445"/>
|
7
|
+
</identifier>
|
8
|
+
<name>
|
9
|
+
<family value="Bloodraw"/>
|
10
|
+
<given value="Leanard"/>
|
11
|
+
<given value="T"/>
|
12
|
+
<suffix value="Jr"/>
|
13
|
+
</name>
|
14
|
+
<telecom>
|
15
|
+
<system value="phone"/>
|
16
|
+
<value value="(555)7771234 ext.11"/>
|
17
|
+
</telecom>
|
18
|
+
</Practitioner>
|
@@ -0,0 +1,36 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<Practitioner xmlns="http://hl7.org/fhir">
|
3
|
+
<id value="pract-uslab-example3"/>
|
4
|
+
<text>
|
5
|
+
<status value="generated"/>
|
6
|
+
<div xmlns="http://www.w3.org/1999/xhtml">
|
7
|
+
<p>
|
8
|
+
<b>Generated Narrative with Details</b>
|
9
|
+
</p>
|
10
|
+
<p>
|
11
|
+
<b>id</b>: pract-uslab-example3</p>
|
12
|
+
<p>
|
13
|
+
<b>identifier</b>: 1234567893 (official)</p>
|
14
|
+
<p>
|
15
|
+
<b>name</b>: Gregory F House </p>
|
16
|
+
<p>
|
17
|
+
<b>telecom</b>: ph: 555 777 1234 11</p>
|
18
|
+
</div>
|
19
|
+
</text>
|
20
|
+
<identifier>
|
21
|
+
<use value="official"/>
|
22
|
+
<system value="http://hl7.org/fhir/sid/us-npi"/>
|
23
|
+
<!-- NPI -->
|
24
|
+
<value value="1234567893"/>
|
25
|
+
</identifier>
|
26
|
+
<name>
|
27
|
+
<family value="House"/>
|
28
|
+
<given value="Gregory"/>
|
29
|
+
<given value="F"/>
|
30
|
+
<suffix value="PhD"/>
|
31
|
+
</name>
|
32
|
+
<telecom>
|
33
|
+
<system value="phone"/>
|
34
|
+
<value value="555 777 1234 11"/>
|
35
|
+
</telecom>
|
36
|
+
</Practitioner>
|
Binary file
|
@@ -0,0 +1,65 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<Specimen xmlns="http://hl7.org/fhir">
|
3
|
+
<id value="spec-100"/>
|
4
|
+
<text>
|
5
|
+
<status value="generated"/>
|
6
|
+
<div xmlns="http://www.w3.org/1999/xhtml">
|
7
|
+
<p>
|
8
|
+
<b>Generated Narrative with Details</b>
|
9
|
+
</p>
|
10
|
+
<p>
|
11
|
+
<b>id</b>: spec-100</p>
|
12
|
+
<p>
|
13
|
+
<b>type</b>: Platelet-free plasma
|
14
|
+
<span style="background: LightGoldenRodYellow ">(Details : {SNOMED CT code "708048008" := "708048008", given as "Plasma specimen with citrate"}; {http://ehr.goodhealthclinic.org/specimens/type code "PFP" := "PFP", given as "Platelet Free Plasma"})</span>
|
15
|
+
</p>
|
16
|
+
<p>
|
17
|
+
<b>subject</b>:
|
18
|
+
<a href="Patient/patient-uslab-example1">Todd Lerr</a>
|
19
|
+
</p>
|
20
|
+
<p>
|
21
|
+
<b>accessionIdentifier</b>: spec-100 (official)</p>
|
22
|
+
</div>
|
23
|
+
</text>
|
24
|
+
<!--Assume no specimen placer ID for now <identifier> <use value="official"/> <system value="http://ehr.goodhealthclinic.org/identifiers/specimen"/> <value value="spec-100"/> </identifier>-->
|
25
|
+
<!--Filler ID moved to accsession number-->
|
26
|
+
<!-- Type is a loosely defined field because there is such a lot of variation in how it is used. The principal variation is how much information that could be represented elsewhere is also represented here. For instance, here's some possible types: lithium heparin plasma (+ .container.additive) (e.g. SNOMED CT 446272009) transfusion bag of blood (+ container.type) Peritoneal lavage (+ collection.bodySite) If the type includes other fields, it would be normal not to populate the other fields Note that this practice is so widespread that it's pointless to try and stop it :( -->
|
27
|
+
<!-- choice of SNOMED CT concept code... -->
|
28
|
+
<type>
|
29
|
+
<coding>
|
30
|
+
<system value="http://snomed.info/sct"/>
|
31
|
+
<!-- EH: Note to balloters - lots of choices for whole blood I chose this. -->
|
32
|
+
<code value="708048008"/>
|
33
|
+
<display value="Plasma specimen with citrate"/>
|
34
|
+
</coding>
|
35
|
+
<!-- and or local code -->
|
36
|
+
<coding>
|
37
|
+
<system value="http://ehr.goodhealthclinic.org/specimens/type"/>
|
38
|
+
<code value="PFP"/>
|
39
|
+
<display value="Platelet Free Plasma"/>
|
40
|
+
</coding>
|
41
|
+
<text value="Platelet-free plasma"/>
|
42
|
+
</type>
|
43
|
+
<!-- Patient is required from core -->
|
44
|
+
<subject>
|
45
|
+
<reference value="Patient/patient-uslab-example1"/>
|
46
|
+
<display value="Todd Lerr"/>
|
47
|
+
</subject>
|
48
|
+
<!-- accession identifier - e.g. assigned by the labaratory when it is received. This is common, unlike specimen identifier -->
|
49
|
+
<accessionIdentifier>
|
50
|
+
<use value="official"/>
|
51
|
+
<system value="http://lis.acmelabs.org/identifiers/accession"/>
|
52
|
+
<value value="spec-100"/>
|
53
|
+
</accessionIdentifier>
|
54
|
+
<collection>
|
55
|
+
<!-- the time of collection is required. Usually a point in time, but can be a period (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine) Should be same a effective times in obs and dr-->
|
56
|
+
<collectedDateTime value="2014-12-05"/>
|
57
|
+
<!-- <bodySite>-->
|
58
|
+
<!-- choice of SNOMED CT concept code... -->
|
59
|
+
<!--<coding> <system value="http://snomed.info/sct"/>-->
|
60
|
+
<!-- EH: Note to balloters - this is to demonstrate use of source for body site not really needed for blood draw. -->
|
61
|
+
<!--<code value="53120007"/> <display value="Arm"/> </coding>-->
|
62
|
+
<!-- and or local code -->
|
63
|
+
<!--<coding> <system value="http://ehr.goodhealthclinic.org"/> <code value="ARM"/> <display value="Arm"/> </coding> <text value="Drawn from Arm"/> </bodySite>-->
|
64
|
+
</collection>
|
65
|
+
</Specimen>
|
@@ -0,0 +1,70 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<Specimen xmlns="http://hl7.org/fhir">
|
3
|
+
<id value="spec-400"/>
|
4
|
+
<text>
|
5
|
+
<status value="generated"/>
|
6
|
+
<div xmlns="http://www.w3.org/1999/xhtml">
|
7
|
+
<p>
|
8
|
+
<b>Generated Narrative with Details</b>
|
9
|
+
</p>
|
10
|
+
<p>
|
11
|
+
<b>id</b>: spec-400</p>
|
12
|
+
<p>
|
13
|
+
<b>type</b>: Stool specimen
|
14
|
+
<span style="background: LightGoldenRodYellow ">(Details : {SNOMED CT code "119339001" := "119339001", given as "Stool specimen"})</span>
|
15
|
+
</p>
|
16
|
+
<p>
|
17
|
+
<b>subject</b>:
|
18
|
+
<a href="Patient/patient-uslab-example1">Todd Lerr</a>
|
19
|
+
</p>
|
20
|
+
<p>
|
21
|
+
<b>accessionIdentifier</b>: 21041205000001 (official)</p>
|
22
|
+
</div>
|
23
|
+
</text>
|
24
|
+
<!-- a specimen identifier - e.g. assigned when the specimen was taken by the orderer/placer use the accession number for the filling lab -->
|
25
|
+
<!-- Placer ID -->
|
26
|
+
<!-- Filler ID moved to accsession number
|
27
|
+
<identifier>
|
28
|
+
<use value="official"></use>
|
29
|
+
<label value="Filler Specimen ID"></label>
|
30
|
+
<system value="http://lis.acmelabs.org/identifiers/specimen"/>
|
31
|
+
<value value="SID456"/>
|
32
|
+
</identifier>
|
33
|
+
-->
|
34
|
+
<!--
|
35
|
+
Type is a loosely defined field because there is such a lot of variation in how it is used.
|
36
|
+
The principal variation is how much information that could be represented elsewhere is also
|
37
|
+
represented here. For instance, here's some possible types:
|
38
|
+
lithium heparin plasma (+ .container.additive) (e.g. SNOMED CT 446272009)
|
39
|
+
transfusion bag of blood (+ container.type)
|
40
|
+
Peritoneal lavage (+ collection.bodySite)
|
41
|
+
If the type includes other fields, it would be normal not to populate the other fields
|
42
|
+
|
43
|
+
Note that this practice is so widespread that it's pointless to try and stop it :( -->
|
44
|
+
<!-- choice of SNOMED CT concept code... -->
|
45
|
+
<type>
|
46
|
+
<coding>
|
47
|
+
<system value="http://snomed.info/sct"/>
|
48
|
+
<code value="119339001"/>
|
49
|
+
<display value="Stool specimen"/>
|
50
|
+
</coding>
|
51
|
+
<text value="Stool specimen"/>
|
52
|
+
</type>
|
53
|
+
<!-- Patient is required from core -->
|
54
|
+
<subject>
|
55
|
+
<reference value="Patient/patient-uslab-example1"/>
|
56
|
+
<display value="Todd Lerr"/>
|
57
|
+
</subject>
|
58
|
+
<!-- accession identifier - e.g. assigned by the labaratory when it is received.
|
59
|
+
This is common, unlike specimen identifier -->
|
60
|
+
<accessionIdentifier>
|
61
|
+
<use value="official"/>
|
62
|
+
<system value="http://lis.acmelabs.org/identifiers/accession"/>
|
63
|
+
<value value="21041205000001"/>
|
64
|
+
</accessionIdentifier>
|
65
|
+
<collection>
|
66
|
+
<!-- the time of collection is required. Usually a point in time, but can be a period
|
67
|
+
(collectedPeriod) if it's a timed collection (e.g. a 24 hour urine) -->
|
68
|
+
<collectedDateTime value="2014-12-05"/>
|
69
|
+
</collection>
|
70
|
+
</Specimen>
|