plan_executor 1.0.2
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- checksums.yaml +7 -0
- data/.gitignore +44 -0
- data/.simplecov +16 -0
- data/.travis.yml +13 -0
- data/Gemfile +26 -0
- data/Gemfile.lock +197 -0
- data/LICENSE +201 -0
- data/README.md +126 -0
- data/Rakefile +25 -0
- data/fixtures/daf/conformance-daf-query-responder.xml +1471 -0
- data/fixtures/diagnostic_order/do-100.xml +64 -0
- data/fixtures/diagnostic_order/do-200.xml +121 -0
- data/fixtures/diagnostic_order/do-300.xml +91 -0
- data/fixtures/diagnostic_order/do-400.xml +88 -0
- data/fixtures/diagnostic_report/dr-100.xml +96 -0
- data/fixtures/diagnostic_report/dr-200.xml +125 -0
- data/fixtures/diagnostic_report/dr-300.xml +132 -0
- data/fixtures/diagnostic_report/dr-400.xml +121 -0
- data/fixtures/financial/claim-example-average.xml +168 -0
- data/fixtures/financial/claim-example-simple.xml +67 -0
- data/fixtures/observation/obs-100.xml +58 -0
- data/fixtures/observation/obs-101.xml +58 -0
- data/fixtures/observation/obs-200.xml +125 -0
- data/fixtures/observation/obs-300.xml +106 -0
- data/fixtures/observation/obs-301.xml +106 -0
- data/fixtures/observation/obs-302.xml +106 -0
- data/fixtures/observation/obs-303.xml +106 -0
- data/fixtures/observation/obs-304.xml +106 -0
- data/fixtures/observation/obs-400.xml +87 -0
- data/fixtures/observation/obs-401.xml +95 -0
- data/fixtures/observation/obs-402.xml +95 -0
- data/fixtures/observation/obs-403.xml +84 -0
- data/fixtures/observation/obs-404.xml +84 -0
- data/fixtures/observation/obs-405.xml +83 -0
- data/fixtures/observation/obs-406.xml +83 -0
- data/fixtures/observation/obs-407.xml +70 -0
- data/fixtures/observation/obs-408.xml +84 -0
- data/fixtures/observation/obs-uslab-example5.xml +102 -0
- data/fixtures/order/order-100.xml +61 -0
- data/fixtures/order/order-200.xml +61 -0
- data/fixtures/order/order-300.xml +61 -0
- data/fixtures/order/order-400.xml +61 -0
- data/fixtures/order_response/ordresp-100.xml +79 -0
- data/fixtures/order_response/ordresp-110.xml +79 -0
- data/fixtures/order_response/ordresp-200.xml +79 -0
- data/fixtures/order_response/ordresp-210.xml +79 -0
- data/fixtures/order_response/ordresp-300.xml +79 -0
- data/fixtures/order_response/ordresp-310.xml +79 -0
- data/fixtures/order_response/ordresp-400.xml +79 -0
- data/fixtures/order_response/ordresp-410.xml +79 -0
- data/fixtures/organization/org-uslab-example3.xml +49 -0
- data/fixtures/patient/patient-example-updated.xml +140 -0
- data/fixtures/patient/patient-example-us-extensions(us01).xml +81 -0
- data/fixtures/patient/patient-example.xml +132 -0
- data/fixtures/patient/patient-format-example.xml +101 -0
- data/fixtures/patient/patient-minimal.xml +9 -0
- data/fixtures/patient/patient-uslab-example1.xml +44 -0
- data/fixtures/practitioner/pract-uslab-example1.xml +18 -0
- data/fixtures/practitioner/pract-uslab-example3.xml +36 -0
- data/fixtures/record/condition-example-f201-fever.xml +63 -0
- data/fixtures/record/condition-example-f205-infection.xml +20 -0
- data/fixtures/record/diagnosticreport-example-f201-brainct.xml +18 -0
- data/fixtures/record/encounter-example-f201-20130404.xml +17 -0
- data/fixtures/record/encounter-example-f202-20130128.xml +17 -0
- data/fixtures/record/observation-example-f202-temperature.xml +60 -0
- data/fixtures/record/organization-example-f201-aumc.xml +5 -0
- data/fixtures/record/organization-example-f203-bumc.xml +5 -0
- data/fixtures/record/patient-example-f201-roel.xml +16 -0
- data/fixtures/record/practitioner-example-f201-ab.xml +14 -0
- data/fixtures/record/procedure-example-f201-tpf.xml +23 -0
- data/fixtures/scheduling/appointment-simple.xml +24 -0
- data/fixtures/scheduling/appointmentresponse-patient-simple.xml +12 -0
- data/fixtures/scheduling/appointmentresponse-practitioner-simple.xml +12 -0
- data/fixtures/scheduling/practitioner-simple.xml +10 -0
- data/fixtures/scheduling/schedule-simple.xml +12 -0
- data/fixtures/scheduling/slot-simple.xml +10 -0
- data/fixtures/specimen/spec-100.xml +65 -0
- data/fixtures/specimen/spec-400.xml +70 -0
- data/fixtures/specimen/spec-uslab-example1.xml +82 -0
- data/fixtures/validation/observation.profile.xml +2045 -0
- data/fixtures/validation/observations/observation-example(example).xml +50 -0
- data/lib/FHIR_structure.json +529 -0
- data/lib/daf_resource_generator.rb +94 -0
- data/lib/data/fhir_structure.rb +8 -0
- data/lib/data/resources.rb +138 -0
- data/lib/executor.rb +56 -0
- data/lib/ext/client.rb +27 -0
- data/lib/ext/client_reply.rb +19 -0
- data/lib/plan_executor.rb +31 -0
- data/lib/resource_generator.rb +656 -0
- data/lib/tasks/tasks.rake +329 -0
- data/lib/tasks/templates/summary.html.erb +163 -0
- data/lib/test_result.rb +69 -0
- data/lib/tests/assertions.rb +261 -0
- data/lib/tests/base_test.rb +117 -0
- data/lib/tests/suites/argonaut_resprint_1_test.rb +260 -0
- data/lib/tests/suites/argonaut_resprint_2_test.rb +369 -0
- data/lib/tests/suites/argonaut_resprint_3_test.rb +309 -0
- data/lib/tests/suites/argonaut_sprint_1_test.rb +187 -0
- data/lib/tests/suites/argonaut_sprint_2_test.rb +115 -0
- data/lib/tests/suites/argonaut_sprint_3_test.rb +208 -0
- data/lib/tests/suites/argonaut_sprint_4_test.rb +335 -0
- data/lib/tests/suites/argonaut_sprint_5_test.rb +196 -0
- data/lib/tests/suites/argonaut_sprint_6_test.rb +243 -0
- data/lib/tests/suites/argonaut_sprint_7_test.rb +161 -0
- data/lib/tests/suites/base_suite.rb +116 -0
- data/lib/tests/suites/connectathon_audit_track.rb +354 -0
- data/lib/tests/suites/connectathon_fetch_patient_record.rb +443 -0
- data/lib/tests/suites/connectathon_financial_track.rb +380 -0
- data/lib/tests/suites/connectathon_lab_order_track.rb +239 -0
- data/lib/tests/suites/connectathon_patient_track.rb +364 -0
- data/lib/tests/suites/connectathon_profile_validation.rb +101 -0
- data/lib/tests/suites/connectathon_scheduling_track.rb +266 -0
- data/lib/tests/suites/connectathon_terminology_track.rb +242 -0
- data/lib/tests/suites/daf_profiles_test.rb +431 -0
- data/lib/tests/suites/format_test.rb +453 -0
- data/lib/tests/suites/history_test.rb +311 -0
- data/lib/tests/suites/read_test.rb +104 -0
- data/lib/tests/suites/resource_test.rb +553 -0
- data/lib/tests/suites/search_test.rb +219 -0
- data/lib/tests/suites/search_test_robust.rb +172 -0
- data/lib/tests/suites/sprinkler_search_test.rb +660 -0
- data/lib/tests/suites/suite_engine.rb +114 -0
- data/lib/tests/suites/transaction_test.rb +571 -0
- data/lib/tests/testscripts/base_testscript.rb +480 -0
- data/lib/tests/testscripts/testscript_engine.rb +81 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/Client Assigned Id/track1-patient-base-client-id-json.xml +348 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/Client Assigned Id/track1-patient-bonus-client-id-json.xml +420 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/Server Assigned Id/track1-patient-base-server-id-json.xml +352 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/_reference/conformance/PatientConformance.xml +34 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/_reference/resources/patient-create-PeterChalmers-min.json +45 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track1-Patient/_reference/resources/patient-create-PeterChalmers-min.xml +26 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track11-SDC/_reference/C-CDA_R2-1_CCD-ussg.xml +3414 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/Lookup/track2-ts-suite5-loinc-lookup-xml.xml +224 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/README.html +85 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/Translate/track2-ts-suite6-translate-xml.xml +224 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/Validate-code/Client Assigned Id/track2-ts-suite3-validate-code-client-id.xml +1807 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ConceptMapSuite6Conformance.xml +11 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ValueSetSuite1Conformance.xml +17 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ValueSetSuite2Conformance.xml +17 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ValueSetSuite3Conformance.xml +14 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ValueSetSuite4Conformance.xml +14 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track2-Terminology/_reference/conformance/ValueSetSuite5Conformance.xml +11 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/conformance/DecisionSupportServiceModule-Evaluate.xml +17 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-incomplete-request-payload.xml +26 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-incomplete-response-min-payload.xml +7 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-malformed-request-payload.xml +28 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-request-payload.xml +28 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-response-min-payload.xml +7 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-response-payload.xml +332 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-unauthorized-request-payload.xml +28 -0
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- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/ecrs-fhir-cdc-immunizations-unauthorized-response-payload.xml +8 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/gao-assessment-request-payload.xml +176 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/gao-assessment-response-payload-min.xml +32 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/_reference/resources/gao-assessment-response-payload.xml +80 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/track3-cds-evaluate-cdc-immunization.xml +290 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track3-CDS-on-FHIR/track3-cds-evaluate-gao-profile.xml +110 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track6-FHIR-Genomics/Client_Assigned_Id/TestScript_FHIR-Genomics.xml +170 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track6-FHIR-Genomics/_reference/resources/sequence-example-1.xml +31 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track6-FHIR-Genomics/_reference/resources/sequence-example-2.xml +31 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Actors.png +0 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Client_Assigned_Id/track7-laborder100-xml.xml +590 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Client_Assigned_Id/track7-laborder200-xml.xml +587 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Client_Assigned_Id/track7-laborder300-xml.xml +612 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Client_Assigned_Id/track7-laborder400-xml.xml +635 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Peer-to-Peer/track7-laborder100-peer2peer-xml.xml +752 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/Thumbs.db +0 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/conformance/LabOrderLabReport-CreateDeleteReadUpdate.xml +187 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/conformance/html.xslt +45 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-100-update.xml +64 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-100.xml +64 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-200-update.xml +121 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-200.xml +121 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-300-update.xml +91 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-300.xml +91 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-400-update.xml +88 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-400.xml +88 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticReport/dr-100.xml +96 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticReport/dr-200.xml +125 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticReport/dr-300.xml +132 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticReport/dr-400.xml +121 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-100.xml +58 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-101.xml +58 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-200.xml +125 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-300.xml +106 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-301.xml +106 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-302.xml +106 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-303.xml +106 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-304.xml +106 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-400.xml +87 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-401.xml +95 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-402.xml +95 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-403.xml +84 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-404.xml +84 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-405.xml +83 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-406.xml +83 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-407.xml +70 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-408.xml +84 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Observation/obs-uslab-example5.xml +102 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Order/order-100.xml +61 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Order/order-200.xml +61 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Order/order-300.xml +61 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Order/order-400.xml +61 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-100.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-110.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-200.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-210.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-300.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-310.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-400.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/OrderResponse/ordresp-410.xml +79 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Organization/org-uslab-example3.xml +49 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Patient/patient-uslab-example1.xml +44 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Practitioner/pract-uslab-example1.xml +18 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Practitioner/pract-uslab-example3.xml +36 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/Thumbs.db +0 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/spec-100.xml +65 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/spec-400.xml +70 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/spec-uslab-example1.xml +82 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 1 Document.txt +122 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 2 Document.txt +103 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 3 Document.txt +201 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 4 Document.txt +310 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/conformance/MedicationStatementCreate.xml +11 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/conformance/PatientSearchType.xml +15 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/resources/medicationstatement-create.json +39 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/resources/medicationstatement-patch.json +3 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-medicationstatement-json-if-match.xml +321 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-medicationstatement-json.xml +303 -0
- data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-peer2peer-patient-json.xml +235 -0
- data/plan_executor.gemspec +14 -0
- data/test/fixtures/diagnostic_bundle.xml +51 -0
- data/test/fixtures/lab_results_bundle.xml +49 -0
- data/test/fixtures/observation_bundle.json +61 -0
- data/test/fixtures/testscript-example.xml +202 -0
- data/test/fixtures/testscript-history.xml +143 -0
- data/test/fixtures/testscript-readtest.xml +272 -0
- data/test/fixtures/testscript-search.xml +282 -0
- data/test/fixtures/testscript-update.xml +147 -0
- data/test/fixtures/vital_signs_bundle.xml +117 -0
- data/test/test_helper.rb +8 -0
- data/test/unit/argonaut_sprint6_test.rb +31 -0
- data/test/unit/argonaut_sprint7_test.rb +21 -0
- data/test/unit/basic_test.rb +27 -0
- data/test/unit/fetch_patient_record_test.rb +357 -0
- data/test/unit/financial_test.rb +41 -0
- data/test/unit/fixtures_test.rb +45 -0
- data/test/unit/metadata_test.rb +33 -0
- metadata +394 -0
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module Crucible
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module Tests
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class ResourceGenerator
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#
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# Generate a FHIR resource for the given class `klass`
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# If `embedded` is greater than zero, all embedded children will also
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# be generated.
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#
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def self.generate(klass,embedded=0)
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resource = klass.new
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Time.zone = 'UTC'
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set_fields!(resource)
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if(embedded > 0)
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generate_children!(resource,embedded)
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end
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resource.xmlId=nil if resource.respond_to?(:xmlId=)
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resource.versionId=nil if resource.respond_to?(:versionId=)
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resource.version=nil if resource.respond_to?(:version=)
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resource.text=nil if [FHIR::Bundle,FHIR::Binary,FHIR::Parameters].include?(klass)
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apply_invariants!(resource)
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resource
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end
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#
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# Set the fields of this resource to have some random values.
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#
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def self.set_fields!(resource)
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# Organize some of the validators
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validators = {}
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resource.class.validators.collect{|v| v if v.class==Mongoid::Validatable::FormatValidator}.compact.each do |v|
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v.attributes.each{|a| validators[a] = v.options[:with]}
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end
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# For now, we'll skip fields that can have multiple datatypes, such as attribute[x]
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multiples = []
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if resource.class.constants.include? :MULTIPLE_TYPES
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multiples = resource.class::MULTIPLE_TYPES.map{|k,v| v}.flatten
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end
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# Get valid codes
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valid_codes = {}
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if resource.class.constants.include? :VALID_CODES
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valid_codes = resource.class::VALID_CODES
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end
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# Get special codes
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special_codes = {}
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if resource.class.constants.include? :SPECIAL_CODES
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special_codes = resource.class::SPECIAL_CODES
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end
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fields = resource.fields
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fields.each do |key,value|
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type = value.options[:type]
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next if ['id','xmlId','version','versionId','implicitRules'].include? key
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next if multiples.include? key
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gen = nil
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if type == String
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gen = SecureRandom.base64
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if valid_codes[key.to_sym]
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valid_values = valid_codes[key.to_sym]
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if !valid_values.nil?
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gen = valid_values[ SecureRandom.random_number( valid_values.length ) ]
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end
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elsif validators[key.to_sym]
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date = DateTime.now
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regex = validators[key.to_sym]
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if date.strftime("%Y-%m-%dT%T.%LZ").match(regex)
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gen = date.strftime("%Y-%m-%dT%T.%LZ")
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elsif date.strftime("%Y-%m-%d").match(regex)
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gen = date.strftime("%Y-%m-%d")
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elsif date.strftime("%T").match(regex)
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gen = date.strftime("%T")
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end
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elsif special_codes[key.to_sym]
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if special_codes[key.to_sym]=='MimeType'
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gen = 'text/plain'
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elsif special_codes[key.to_sym]=='Language'
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gen = 'en-US'
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end
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end
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elsif type == Integer
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gen = (SecureRandom.random_number(100) + 1) # add one in case this is a "positiveInt" which must be > 0
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elsif type == Float
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gen = SecureRandom.random_number
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while gen.to_s.match(/e/) # according to FHIR spec: decimals may not contain exponents
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gen = SecureRandom.random_number
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end
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elsif type == Mongoid::Boolean
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gen = (SecureRandom.random_number(100) % 2 == 0)
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elsif type == BSON::Binary
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# gen = SecureRandom.random_bytes
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gen = SecureRandom.base64
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elsif type == BSON::ObjectId or type == Array or type == Object or type == FHIR::AnyType
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gen = nil # ignore
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# else
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# puts "Unable to generate field #{key} for #{resource.class} -- unrecognized type: #{type}"
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end
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gen='en-US' if(key=='language' && type==String)
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resource[key] = gen if !gen.nil?
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end
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resource
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end
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#
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# Generate children for this resource.
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#
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def self.generate_children!(resource,embedded=0)
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# For now, we'll skip fields that can have multiple datatypes, such as attribute[x]
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multiples = []
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if resource.class.constants.include? :MULTIPLE_TYPES
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multiples = resource.class::MULTIPLE_TYPES.map{|k,v| v}.flatten
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end
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children = resource.embedded_relations
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children.each do |key,value|
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# TODO: Determine if we can generate references or meta information
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next if ['meta'].include? key
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next if multiples.include? key
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klass = resource.get_fhir_class_from_resource_type(value[:class_name])
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case klass
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when FHIR::Reference
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child = FHIR::Reference.new
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child.display = "#{key} #{SecureRandom.base64}"
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when FHIR::CodeableConcept
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child = FHIR::CodeableConcept.new
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child.text = "#{key} #{SecureRandom.base64}"
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when FHIR::Coding
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child = FHIR::Coding.new
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child.display = "#{key} #{SecureRandom.base64}"
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when FHIR::Quantity
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child = FHIR::Quantity.new
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child.value = SecureRandom.random_number
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while child.value.to_s.match(/e/) # according to FHIR spec: decimals may not contain exponents
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child.value = SecureRandom.random_number
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end
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child.unit = SecureRandom.base64
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else
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child = generate(klass,(embedded-1)) if(!['FHIR::Extension','FHIR::PrimitiveExtension','FHIR::Signature'].include?(value[:class_name]))
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end
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case klass
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when FHIR::Identifier
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child.system = nil
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when FHIR::Attachment
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child.url = nil
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end
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if value[:relation] == Mongoid::Relations::Embedded::Many
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child = ([] << child) if child
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end
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resource[key] = child if child
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end
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resource
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end
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def self.random_oid
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oid = "urn:oid:2"
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SecureRandom.random_number(12).times do |i|
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oid = "#{oid}.#{SecureRandom.random_number(500)}"
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end
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oid
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end
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def self.minimal_patient(identifier='0',name='Name')
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resource = FHIR::Patient.new
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resource.identifier = [ minimal_identifier(identifier) ]
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resource.name = [ minimal_humanname(name) ]
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resource
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end
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# Common systems:
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# SNOMED http://snomed.info/sct
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# LOINC http://loinc.org
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# ICD-10 http://hl7.org/fhir/sid/icd-10
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# units: must be UCOM
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def self.minimal_observation(system='http://loinc.org',code='8302-2',value=170,units='cm',patientId=nil)
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resource = FHIR::Observation.new
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resource.status = 'final'
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resource.code = minimal_codeableconcept(system,code)
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if patientId
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ref = FHIR::Reference.new
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ref.reference = "Patient/#{patientId}"
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resource.subject = ref
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end
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resource.valueQuantity = minimal_quantity(value,units)
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resource
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end
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# Default system/code are for SNOMED "Obese (finding)"
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def self.minimal_condition(system='http://snomed.info/sct',code='414915002',patientId=nil)
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resource = FHIR::Condition.new
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resource.patient = FHIR::Reference.new
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if patientId
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resource.patient.reference = "Patient/#{patientId}"
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else
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resource.patient.display = 'Patient'
|
201
|
+
end
|
202
|
+
resource.code = minimal_codeableconcept(system,code)
|
203
|
+
resource.verificationStatus = 'confirmed'
|
204
|
+
resource
|
205
|
+
end
|
206
|
+
|
207
|
+
def self.minimal_identifier(identifier='0')
|
208
|
+
mid = FHIR::Identifier.new
|
209
|
+
mid.use = 'official'
|
210
|
+
mid.system = 'http://projectcrucible.org'
|
211
|
+
mid.value = identifier
|
212
|
+
mid
|
213
|
+
end
|
214
|
+
|
215
|
+
def self.minimal_humanname(name='Name')
|
216
|
+
hn = FHIR::HumanName.new
|
217
|
+
hn.use = 'official'
|
218
|
+
hn.family = [ 'Crucible' ]
|
219
|
+
hn.given = [ name ]
|
220
|
+
hn.text = "#{hn.given[0]} #{hn.family[0]}"
|
221
|
+
hn
|
222
|
+
end
|
223
|
+
|
224
|
+
def self.textonly_codeableconcept(text='text')
|
225
|
+
concept = FHIR::CodeableConcept.new
|
226
|
+
concept.text = text
|
227
|
+
concept
|
228
|
+
end
|
229
|
+
|
230
|
+
def self.textonly_reference(text='Reference')
|
231
|
+
ref = FHIR::Reference.new
|
232
|
+
ref.display = "#{text} #{SecureRandom.base64}"
|
233
|
+
ref
|
234
|
+
end
|
235
|
+
|
236
|
+
# Common systems:
|
237
|
+
# SNOMED http://snomed.info/sct
|
238
|
+
# LOINC http://loinc.org
|
239
|
+
# ICD-10 http://hl7.org/fhir/sid/icd-10
|
240
|
+
def self.minimal_codeableconcept(system='http://loinc.org',code='8302-2')
|
241
|
+
concept = FHIR::CodeableConcept.new
|
242
|
+
concept.coding = [ minimal_coding(system,code) ]
|
243
|
+
concept
|
244
|
+
end
|
245
|
+
|
246
|
+
# Common systems:
|
247
|
+
# SNOMED http://snomed.info/sct
|
248
|
+
# LOINC http://loinc.org
|
249
|
+
# ICD-10 http://hl7.org/fhir/sid/icd-10
|
250
|
+
def self.minimal_coding(system='http://loinc.org',code='8302-2')
|
251
|
+
coding = FHIR::Coding.new
|
252
|
+
coding.system = system
|
253
|
+
coding.code = code
|
254
|
+
coding
|
255
|
+
end
|
256
|
+
|
257
|
+
def self.minimal_quantity(value=170,units='cm')
|
258
|
+
quantity = FHIR::Quantity.new
|
259
|
+
quantity.value = value
|
260
|
+
quantity.unit = units
|
261
|
+
quantity.system = 'http://unitsofmeasure.org'
|
262
|
+
quantity
|
263
|
+
end
|
264
|
+
|
265
|
+
def self.minimal_animal
|
266
|
+
animal = FHIR::Patient::AnimalComponent.new
|
267
|
+
animal.species = minimal_codeableconcept('http://hl7.org/fhir/animal-species','canislf') # dog
|
268
|
+
animal.breed = minimal_codeableconcept('http://hl7.org/fhir/animal-breed','gret') # golden retriever
|
269
|
+
animal.genderStatus = minimal_codeableconcept('http://hl7.org/fhir/animal-genderstatus','intact') # intact
|
270
|
+
animal
|
271
|
+
end
|
272
|
+
|
273
|
+
def self.apply_invariants!(resource)
|
274
|
+
case resource.class
|
275
|
+
when FHIR::Appointment
|
276
|
+
resource.reason = minimal_codeableconcept('http://snomed.info/sct','219006') # drinker of alcohol
|
277
|
+
resource.participant.each{|p| p.fhirType=[ minimal_codeableconcept('http://hl7.org/fhir/participant-type','emergency') ] }
|
278
|
+
when FHIR::AppointmentResponse
|
279
|
+
resource.participantType = [ minimal_codeableconcept('http://hl7.org/fhir/participant-type','emergency') ]
|
280
|
+
when FHIR::AuditEvent
|
281
|
+
resource.object.each do |o|
|
282
|
+
o.query=nil
|
283
|
+
o.name = "name #{SecureRandom.base64}" if o.name.nil?
|
284
|
+
end
|
285
|
+
when FHIR::Bundle
|
286
|
+
resource.total = nil if !['searchset','history'].include?(resource.fhirType)
|
287
|
+
resource.entry.each {|e|e.search=nil} if resource.fhirType!='searchset'
|
288
|
+
resource.entry.each {|e|e.request=nil} if !['batch','transaction','history'].include?(resource.fhirType)
|
289
|
+
resource.entry.each {|e|e.response=nil} if !['batch-response','transaction-response'].include?(resource.fhirType)
|
290
|
+
head = resource.entry.first
|
291
|
+
if !head.nil?
|
292
|
+
if head.request.nil? && head.response.nil? && head.resource.nil?
|
293
|
+
if resource.fhirType == 'document'
|
294
|
+
head.resource = generate(FHIR::Composition,3)
|
295
|
+
elsif resource.fhirType == 'message'
|
296
|
+
head.resource = generate(FHIR::MessageHeader,3)
|
297
|
+
else
|
298
|
+
head.resource = generate(FHIR::Basic,3)
|
299
|
+
end
|
300
|
+
end
|
301
|
+
if head.resource.nil?
|
302
|
+
head.fullUrl = nil
|
303
|
+
else
|
304
|
+
rid = SecureRandom.random_number(100) + 1
|
305
|
+
head.fullUrl = "http://projectcrucible.org/fhir/#{rid}"
|
306
|
+
head.resource.xmlId = "#{rid}"
|
307
|
+
end
|
308
|
+
end
|
309
|
+
when FHIR::CarePlan
|
310
|
+
resource.activity.each {|a| a.reference = nil if a.detail }
|
311
|
+
when FHIR::Claim
|
312
|
+
resource.item.each do |item|
|
313
|
+
item.fhirType = minimal_coding('http://hl7.org/fhir/v3/ActCode','OHSINV')
|
314
|
+
item.detail.each do |detail|
|
315
|
+
detail.fhirType = minimal_coding('http://hl7.org/fhir/v3/ActCode','OHSINV')
|
316
|
+
detail.subDetail.each do |sub|
|
317
|
+
sub.fhirType = minimal_coding('http://hl7.org/fhir/v3/ActCode','OHSINV')
|
318
|
+
sub.service = minimal_coding('http://hl7.org/fhir/ex-USCLS','1205')
|
319
|
+
end
|
320
|
+
end
|
321
|
+
end
|
322
|
+
resource.missingTeeth.each do |mt|
|
323
|
+
mt.tooth = minimal_coding('http://hl7.org/fhir/ex-fdi','42')
|
324
|
+
end
|
325
|
+
when FHIR::ClaimResponse
|
326
|
+
resource.item.each do |item|
|
327
|
+
item.adjudication.each{|a|a.code = minimal_coding('http://hl7.org/fhir/adjudication','benefit')}
|
328
|
+
item.detail.each do |detail|
|
329
|
+
detail.adjudication.each{|a|a.code = minimal_coding('http://hl7.org/fhir/adjudication','benefit')}
|
330
|
+
detail.subDetail.each do |sub|
|
331
|
+
sub.adjudication.each{|a|a.code = minimal_coding('http://hl7.org/fhir/adjudication','benefit')}
|
332
|
+
end
|
333
|
+
end
|
334
|
+
end
|
335
|
+
resource.addItem.each do |addItem|
|
336
|
+
addItem.adjudication.each{|a|a.code = minimal_coding('http://hl7.org/fhir/adjudication','benefit')}
|
337
|
+
addItem.detail.each do |detail|
|
338
|
+
detail.adjudication.each{|a|a.code = minimal_coding('http://hl7.org/fhir/adjudication','benefit')}
|
339
|
+
end
|
340
|
+
end
|
341
|
+
when FHIR::Communication
|
342
|
+
resource.payload = nil
|
343
|
+
when FHIR::CommunicationRequest
|
344
|
+
resource.payload = nil
|
345
|
+
when FHIR::Composition
|
346
|
+
resource.attester.each {|a| a.mode = ['professional']}
|
347
|
+
resource.section.each do |section|
|
348
|
+
section.emptyReason = nil
|
349
|
+
section.section.each do |sub|
|
350
|
+
sub.emptyReason = nil
|
351
|
+
sub.section = nil
|
352
|
+
end
|
353
|
+
end
|
354
|
+
when FHIR::ConceptMap
|
355
|
+
if(resource.sourceUri.nil? && resource.sourceReference.nil?)
|
356
|
+
resource.sourceReference = textonly_reference('ValueSet')
|
357
|
+
end
|
358
|
+
if(resource.targetUri.nil? && resource.targetReference.nil?)
|
359
|
+
resource.targetReference = textonly_reference('ValueSet')
|
360
|
+
end
|
361
|
+
when FHIR::Conformance
|
362
|
+
resource.fhirVersion = 'DSTU2'
|
363
|
+
resource.format = ['xml','json']
|
364
|
+
if resource.kind == 'capability'
|
365
|
+
resource.implementation = nil
|
366
|
+
elsif resource.kind == 'requirements'
|
367
|
+
resource.implementation = nil
|
368
|
+
resource.software = nil
|
369
|
+
end
|
370
|
+
resource.messaging.each{|m| m.endpoint = nil} if resource.kind != 'instance'
|
371
|
+
when FHIR::Contract
|
372
|
+
resource.actor.each do |actor|
|
373
|
+
actor.entity = textonly_reference('Patient')
|
374
|
+
end
|
375
|
+
resource.term.each do |term|
|
376
|
+
term.actor.each do |actor|
|
377
|
+
actor.entity = textonly_reference('Organization')
|
378
|
+
end
|
379
|
+
term.group.each do |group|
|
380
|
+
group.actor.each do |actor|
|
381
|
+
actor.entity = textonly_reference('Organization')
|
382
|
+
end
|
383
|
+
end
|
384
|
+
end
|
385
|
+
resource.friendly.each do |f|
|
386
|
+
f.contentAttachment = nil
|
387
|
+
f.contentReference = textonly_reference('DocumentReference')
|
388
|
+
end
|
389
|
+
resource.legal.each do |f|
|
390
|
+
f.contentAttachment = nil
|
391
|
+
f.contentReference = textonly_reference('DocumentReference')
|
392
|
+
end
|
393
|
+
resource.rule.each do |f|
|
394
|
+
f.contentAttachment = nil
|
395
|
+
f.contentReference = textonly_reference('DocumentReference')
|
396
|
+
end
|
397
|
+
when FHIR::DataElement
|
398
|
+
resource.mapping.each do |m|
|
399
|
+
m.fhirIdentity = SecureRandom.base64 if m.fhirIdentity.nil?
|
400
|
+
m.fhirIdentity.gsub!(/[^0-9A-Za-z]/, '')
|
401
|
+
end
|
402
|
+
when FHIR::DeviceMetric
|
403
|
+
resource.measurementPeriod = nil
|
404
|
+
when FHIR::DiagnosticReport
|
405
|
+
date = DateTime.now
|
406
|
+
resource.effectiveDateTime = date.strftime("%Y-%m-%dT%T.%LZ")
|
407
|
+
resource.effectivePeriod = nil
|
408
|
+
when FHIR::DocumentManifest
|
409
|
+
resource.content.each do |c|
|
410
|
+
c.pAttachment = nil
|
411
|
+
c.pReference = textonly_reference('Any')
|
412
|
+
end
|
413
|
+
when FHIR::DocumentReference
|
414
|
+
resource.docStatus = minimal_codeableconcept('http://hl7.org/fhir/composition-status','preliminary')
|
415
|
+
when FHIR::ElementDefinition
|
416
|
+
keys = []
|
417
|
+
resource.constraint.each do |constraint|
|
418
|
+
constraint.key = SecureRandom.base64 if constraint.key.nil?
|
419
|
+
constraint.key.gsub!(/[^0-9A-Za-z]/, '')
|
420
|
+
keys << constraint.key
|
421
|
+
constraint.xpath = "/"
|
422
|
+
end
|
423
|
+
resource.condition = keys
|
424
|
+
resource.mapping.each do |m|
|
425
|
+
m.fhirIdentity = SecureRandom.base64 if m.fhirIdentity.nil?
|
426
|
+
m.fhirIdentity.gsub!(/[^0-9A-Za-z]/, '')
|
427
|
+
end
|
428
|
+
resource.max = "#{resource.min+1}"
|
429
|
+
# TODO remove bindings for things that can't be code, Coding, CodeableConcept
|
430
|
+
is_codeable = false
|
431
|
+
resource.fhirType.each do |f|
|
432
|
+
is_codeable = (['code','Coding','CodeableConcept'].include?(f.code))
|
433
|
+
end
|
434
|
+
resource.binding = nil unless is_codeable
|
435
|
+
when FHIR::Goal
|
436
|
+
resource.outcome.each do |outcome|
|
437
|
+
outcome.resultCodeableConcept = nil
|
438
|
+
outcome.resultReference = textonly_reference('Observation')
|
439
|
+
end
|
440
|
+
when FHIR::Group
|
441
|
+
resource.member = [] if resource.actual==false
|
442
|
+
resource.characteristic.each do |c|
|
443
|
+
c.valueCodeableConcept = nil
|
444
|
+
c.valueBoolean = true
|
445
|
+
c.valueQuantity = nil
|
446
|
+
c.valueRange = nil
|
447
|
+
end
|
448
|
+
when FHIR::ImagingObjectSelection
|
449
|
+
resource.uid = random_oid
|
450
|
+
index = SecureRandom.random_number(FHIR::ImagingObjectSelection::VALID_CODES[:title].length)
|
451
|
+
code = FHIR::ImagingObjectSelection::VALID_CODES[:title][index]
|
452
|
+
resource.title = minimal_codeableconcept('http://nema.org/dicom/dicm',code)
|
453
|
+
resource.study.each do |study|
|
454
|
+
study.uid = random_oid
|
455
|
+
study.series.each do |series|
|
456
|
+
series.uid = random_oid
|
457
|
+
series.instance.each do |instance|
|
458
|
+
instance.sopClass = random_oid
|
459
|
+
instance.uid = random_oid
|
460
|
+
end
|
461
|
+
end
|
462
|
+
end
|
463
|
+
when FHIR::ImagingStudy
|
464
|
+
resource.uid = random_oid
|
465
|
+
resource.series.each do |series|
|
466
|
+
series.uid=random_oid
|
467
|
+
series.instance.each do |instance|
|
468
|
+
instance.uid = random_oid
|
469
|
+
instance.sopClass = random_oid
|
470
|
+
end
|
471
|
+
end
|
472
|
+
when FHIR::Immunization
|
473
|
+
if resource.wasNotGiven
|
474
|
+
resource.explanation.reasonNotGiven = [ textonly_codeableconcept("reasonNotGiven #{SecureRandom.base64}") ]
|
475
|
+
resource.explanation.reason = nil
|
476
|
+
resource.reaction = nil
|
477
|
+
else
|
478
|
+
resource.explanation.reasonNotGiven = nil
|
479
|
+
resource.explanation.reason = [ textonly_codeableconcept("reason #{SecureRandom.base64}") ]
|
480
|
+
end
|
481
|
+
when FHIR::ImplementationGuide
|
482
|
+
resource.fhirVersion = "DSTU2"
|
483
|
+
resource.package.each do |package|
|
484
|
+
package.resource.each do |r|
|
485
|
+
r.sourceUri = nil
|
486
|
+
r.sourceReference = textonly_reference('Any')
|
487
|
+
end
|
488
|
+
end
|
489
|
+
when FHIR::List
|
490
|
+
resource.emptyReason = nil
|
491
|
+
resource.entry.each do |entry|
|
492
|
+
resource.mode = 'changes' if !entry.fhirDeleted.nil?
|
493
|
+
end
|
494
|
+
when FHIR::Media
|
495
|
+
if resource.fhirType == 'video'
|
496
|
+
resource.frames = nil
|
497
|
+
elsif resource.fhirType == 'photo'
|
498
|
+
resource.duration = nil
|
499
|
+
elsif resource.fhirType == 'audio'
|
500
|
+
resource.height = nil
|
501
|
+
resource.width = nil
|
502
|
+
resource.frames = nil
|
503
|
+
else
|
504
|
+
resource.height = nil
|
505
|
+
resource.width = nil
|
506
|
+
resource.frames = nil
|
507
|
+
end
|
508
|
+
when FHIR::Medication
|
509
|
+
if resource.product.try(:ingredient)
|
510
|
+
resource.product.ingredient.each {|i|i.amount = nil}
|
511
|
+
end
|
512
|
+
when FHIR::MedicationAdministration
|
513
|
+
date = DateTime.now
|
514
|
+
resource.effectiveTimeDateTime = date.strftime("%Y-%m-%dT%T.%LZ")
|
515
|
+
resource.effectiveTimePeriod = nil
|
516
|
+
if resource.wasNotGiven
|
517
|
+
resource.reasonGiven = nil
|
518
|
+
else
|
519
|
+
resource.reasonNotGiven = nil
|
520
|
+
end
|
521
|
+
resource.medicationReference = textonly_reference('Medication')
|
522
|
+
resource.medicationCodeableConcept = nil
|
523
|
+
when FHIR::MedicationDispense
|
524
|
+
resource.medicationReference = textonly_reference('Medication')
|
525
|
+
resource.medicationCodeableConcept = nil
|
526
|
+
resource.dosageInstruction.each {|d|d.timing = nil }
|
527
|
+
when FHIR::MedicationOrder
|
528
|
+
resource.medicationReference = textonly_reference('Medication')
|
529
|
+
resource.medicationCodeableConcept = nil
|
530
|
+
resource.dosageInstruction.each {|d|d.timing = nil }
|
531
|
+
when FHIR::MedicationStatement
|
532
|
+
resource.reasonNotTaken = nil if resource.wasNotTaken != true
|
533
|
+
resource.medicationReference = textonly_reference('Medication')
|
534
|
+
resource.medicationCodeableConcept = nil
|
535
|
+
resource.dosage.each{|d|d.timing=nil}
|
536
|
+
when FHIR::MessageHeader
|
537
|
+
resource.response.identifier.gsub!(/[^0-9A-Za-z]/, '') if resource.try(:response).try(:identifier)
|
538
|
+
when FHIR::NamingSystem
|
539
|
+
resource.replacedBy = nil if resource.status!='retired'
|
540
|
+
if resource.kind == 'root'
|
541
|
+
resource.uniqueId.each do |uid|
|
542
|
+
uid.fhirType='other' if ['uuid','oid'].include?(uid.fhirType)
|
543
|
+
end
|
544
|
+
end
|
545
|
+
resource.uniqueId.each do |uid|
|
546
|
+
uid.preferred = nil
|
547
|
+
end
|
548
|
+
when FHIR::NutritionOrder
|
549
|
+
resource.oralDiet.schedule = nil if resource.oralDiet
|
550
|
+
resource.supplement.each{|s|s.schedule=nil}
|
551
|
+
resource.enteralFormula.administration = nil if resource.enteralFormula
|
552
|
+
when FHIR::OperationDefinition
|
553
|
+
resource.parameter.each do |p|
|
554
|
+
p.binding = nil
|
555
|
+
p.part = nil
|
556
|
+
end
|
557
|
+
when FHIR::Order
|
558
|
+
resource.when.schedule = nil
|
559
|
+
when FHIR::Patient
|
560
|
+
resource.maritalStatus = minimal_codeableconcept('http://hl7.org/fhir/v3/MaritalStatus','S')
|
561
|
+
when FHIR::Procedure
|
562
|
+
resource.reasonNotPerformed = nil if resource.notPerformed != true
|
563
|
+
resource.focalDevice.each do |fd|
|
564
|
+
fd.action = minimal_codeableconcept('http://hl7.org/fhir/ValueSet/device-action','implanted')
|
565
|
+
end
|
566
|
+
when FHIR::Provenance
|
567
|
+
resource.entity.each do |e|
|
568
|
+
e.agent.relatedAgent = nil if e.agent
|
569
|
+
end
|
570
|
+
when FHIR::RelatedPerson
|
571
|
+
resource.relationship = minimal_codeableconcept('http://hl7.org/fhir/patient-contact-relationship','family')
|
572
|
+
when FHIR::Questionnaire
|
573
|
+
resource.group.required = true
|
574
|
+
resource.group.group = nil
|
575
|
+
resource.group.question.each {|q|q.options = nil }
|
576
|
+
when FHIR::QuestionnaireResponse
|
577
|
+
resource.group.group = nil
|
578
|
+
resource.group.question.each {|q|q.answer = nil }
|
579
|
+
when FHIR::Subscription
|
580
|
+
resource.status = 'requested' if resource.xmlId.nil?
|
581
|
+
resource.channel.payload = 'applicaton/json+fhir'
|
582
|
+
resource.end = nil
|
583
|
+
when FHIR::SupplyDelivery
|
584
|
+
resource.fhirType = minimal_codeableconcept('http://hl7.org/fhir/supply-item-type','medication')
|
585
|
+
when FHIR::SupplyRequest
|
586
|
+
resource.kind = minimal_codeableconcept('http://hl7.org/fhir/supply-kind','central')
|
587
|
+
if resource.when
|
588
|
+
resource.when.schedule = nil
|
589
|
+
resource.when.code = minimal_codeableconcept('http://snomed.info/sct','20050000') #biweekly
|
590
|
+
end
|
591
|
+
when FHIR::StructureDefinition
|
592
|
+
resource.fhirVersion = 'DSTU2'
|
593
|
+
resource.snapshot.element.first.path = resource.constrainedType if resource.snapshot && resource.snapshot.element
|
594
|
+
resource.mapping.each do |m|
|
595
|
+
m.fhirIdentity.gsub!(/[^0-9A-Za-z]/, '') if m.fhirIdentity
|
596
|
+
end
|
597
|
+
when FHIR::TestScript
|
598
|
+
resource.variable.each do |v|
|
599
|
+
v.sourceId.gsub!(/[^0-9A-Za-z]/, '') if v.sourceId
|
600
|
+
v.path = nil if v.headerField
|
601
|
+
end
|
602
|
+
if resource.setup
|
603
|
+
resource.setup.metadata = nil
|
604
|
+
resource.setup.action.each do |a|
|
605
|
+
a.assert = nil if a.operation
|
606
|
+
apply_invariants!(a.operation) if a.operation
|
607
|
+
apply_invariants!(a.assert) if a.assert
|
608
|
+
end
|
609
|
+
end
|
610
|
+
resource.test.each do |test|
|
611
|
+
test.metadata = nil
|
612
|
+
test.action.each do |a|
|
613
|
+
a.assert = nil if a.operation
|
614
|
+
apply_invariants!(a.operation) if a.operation
|
615
|
+
apply_invariants!(a.assert) if a.assert
|
616
|
+
end
|
617
|
+
end
|
618
|
+
if resource.teardown
|
619
|
+
resource.teardown.action.each do |a|
|
620
|
+
apply_invariants!(a.operation) if a.operation
|
621
|
+
end
|
622
|
+
end
|
623
|
+
when FHIR::TestScript::TestScriptSetupActionAssertComponent
|
624
|
+
# an assertion can only contain one of these...
|
625
|
+
keys = ['contentType','headerField','minimumId','navigationLinks','path','resource','responseCode','response','validateProfileId']
|
626
|
+
has_keys = []
|
627
|
+
keys.each do |key|
|
628
|
+
has_keys << key if resource.try(key.to_sym)
|
629
|
+
end
|
630
|
+
# remove all assertions except the first
|
631
|
+
has_keys[1..-1].each do |key|
|
632
|
+
resource.send("#{key}=",nil)
|
633
|
+
end
|
634
|
+
resource.sourceId.gsub!(/[^0-9A-Za-z]/, '') if resource.sourceId
|
635
|
+
resource.validateProfileId.gsub!(/[^0-9A-Za-z]/, '') if resource.validateProfileId
|
636
|
+
when FHIR::TestScript::TestScriptSetupActionOperationComponent
|
637
|
+
resource.responseId.gsub!(/[^0-9A-Za-z]/, '') if resource.responseId
|
638
|
+
resource.sourceId.gsub!(/[^0-9A-Za-z]/, '') if resource.sourceId
|
639
|
+
resource.targetId.gsub!(/[^0-9A-Za-z]/, '') if resource.targetId
|
640
|
+
when FHIR::ValueSet
|
641
|
+
if resource.compose
|
642
|
+
resource.compose.include.each do |inc|
|
643
|
+
inc.filter = nil if inc.concept
|
644
|
+
end
|
645
|
+
resource.compose.exclude.each do |exc|
|
646
|
+
exc.filter = nil if exc.concept
|
647
|
+
end
|
648
|
+
end
|
649
|
+
else
|
650
|
+
# default
|
651
|
+
end
|
652
|
+
end
|
653
|
+
|
654
|
+
end
|
655
|
+
end
|
656
|
+
end
|