lims-core 3.2.3

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  1. checksums.yaml +15 -0
  2. data/.gitignore +5 -0
  3. data/.rspec +1 -0
  4. data/.rvmrc +2 -0
  5. data/.travis.yml +2 -0
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  7. data/.yard_templates/default/layout/html/footer.erb +0 -0
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  13. data/README.markdown +67 -0
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  15. data/config/database.yml +16 -0
  16. data/doc/Array.html +116 -0
  17. data/doc/Array/ArrayLoggerPersistor.html +152 -0
  18. data/doc/Lims.html +114 -0
  19. data/doc/Lims/Core.html +178 -0
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  24. data/doc/Lims/Core/Actions/Action/InvalidParameters.html +268 -0
  25. data/doc/Lims/Core/Actions/ActionGroup.html +196 -0
  26. data/doc/Lims/Core/Actions/ActionGroup/AfterEval.html +315 -0
  27. data/doc/Lims/Core/Actions/BulkAction.html +224 -0
  28. data/doc/Lims/Core/Actions/BulkAction/AfterEval.html +253 -0
  29. data/doc/Lims/Core/Actions/TestActionGroup.html +101 -0
  30. data/doc/Lims/Core/Actions/TestActionGroup/Action.html +133 -0
  31. data/doc/Lims/Core/Actions/TestActionGroup/ActionGroup.html +127 -0
  32. data/doc/Lims/Core/Base.html +287 -0
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  57. data/doc/Lims/Core/Persistence/PersistAssociationTrait.html +91 -0
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  107. data/lib/common.rb +18 -0
  108. data/lib/lims-core.rb +29 -0
  109. data/lib/lims-core/actions.rb +10 -0
  110. data/lib/lims-core/actions/action.rb +185 -0
  111. data/lib/lims-core/actions/action_group.rb +54 -0
  112. data/lib/lims-core/actions/bulk_action.rb +65 -0
  113. data/lib/lims-core/base.rb +132 -0
  114. data/lib/lims-core/helpers.rb +41 -0
  115. data/lib/lims-core/persistence.rb +15 -0
  116. data/lib/lims-core/persistence/comparison_filter.rb +54 -0
  117. data/lib/lims-core/persistence/filter.rb +23 -0
  118. data/lib/lims-core/persistence/identity_map.rb +55 -0
  119. data/lib/lims-core/persistence/logger/all.rb +5 -0
  120. data/lib/lims-core/persistence/logger/persistor.rb +35 -0
  121. data/lib/lims-core/persistence/logger/session.rb +30 -0
  122. data/lib/lims-core/persistence/logger/store.rb +37 -0
  123. data/lib/lims-core/persistence/message_bus.rb +131 -0
  124. data/lib/lims-core/persistence/multi_criteria_filter.rb +50 -0
  125. data/lib/lims-core/persistence/persist_association_trait.rb +96 -0
  126. data/lib/lims-core/persistence/persistable_trait.rb +150 -0
  127. data/lib/lims-core/persistence/persistor.rb +495 -0
  128. data/lib/lims-core/persistence/resource_state.rb +157 -0
  129. data/lib/lims-core/persistence/search.rb +3 -0
  130. data/lib/lims-core/persistence/search/all.rb +3 -0
  131. data/lib/lims-core/persistence/search/create_search.rb +55 -0
  132. data/lib/lims-core/persistence/search/search_persistor.rb +45 -0
  133. data/lib/lims-core/persistence/search/search_sequel_persistor.rb +40 -0
  134. data/lib/lims-core/persistence/sequel.rb +14 -0
  135. data/lib/lims-core/persistence/sequel/filters.rb +106 -0
  136. data/lib/lims-core/persistence/sequel/migrations.rb +14 -0
  137. data/lib/lims-core/persistence/sequel/migrations/add_audit_tables.rb +147 -0
  138. data/lib/lims-core/persistence/sequel/migrations/initial.rb +156 -0
  139. data/lib/lims-core/persistence/sequel/persistor.rb +200 -0
  140. data/lib/lims-core/persistence/sequel/session.rb +136 -0
  141. data/lib/lims-core/persistence/sequel/store.rb +37 -0
  142. data/lib/lims-core/persistence/session.rb +409 -0
  143. data/lib/lims-core/persistence/state_group.rb +97 -0
  144. data/lib/lims-core/persistence/state_list.rb +56 -0
  145. data/lib/lims-core/persistence/store.rb +73 -0
  146. data/lib/lims-core/persistence/uuid_resource.rb +115 -0
  147. data/lib/lims-core/persistence/uuid_resource_persistor.rb +43 -0
  148. data/lib/lims-core/persistence/uuidable.rb +107 -0
  149. data/lib/lims-core/resource.rb +21 -0
  150. data/lib/lims-core/subclass_tracker.rb +30 -0
  151. data/lib/lims-core/version.rb +5 -0
  152. data/lims-core.gemspec +40 -0
  153. data/makefile +52 -0
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  160. data/spec/actions/action_group_spec.rb +39 -0
  161. data/spec/actions/spec_helper.rb +1 -0
  162. data/spec/persistence/identity_map_spec.rb +55 -0
  163. data/spec/persistence/logger/spec_helper.rb +7 -0
  164. data/spec/persistence/logger/store_spec.rb +48 -0
  165. data/spec/persistence/message_bus_spec.rb +76 -0
  166. data/spec/persistence/sequel/session_spec.rb +125 -0
  167. data/spec/persistence/sequel/spec_helper.rb +39 -0
  168. data/spec/persistence/sequel/store_shared.rb +25 -0
  169. data/spec/persistence/sequel/store_spec.rb +22 -0
  170. data/spec/persistence/session_spec.rb +199 -0
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  173. data/spec/spec_helper.rb +10 -0
  174. data/spec/subclass_tracker_sperc.rb +62 -0
  175. data/utils/constant_tree.rb +29 -0
  176. data/utils/stack.rb +48 -0
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data/doc/Lims/Core/Actions/ActionGroup/AfterEval.html ADDED
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+ Module: Lims::Core::Actions::ActionGroup::AfterEval
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+ &mdash; Documentation by YARD 0.7.3
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+ <div id="menu">
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+ <a href="../../../../_index.html">Index (A)</a> &raquo;
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+ <span class='title'><span class='object_link'><a href="../../../../Lims.html" title="Lims (module)">Lims</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../../../Core.html" title="Lims::Core (module)">Core</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../../Actions.html" title="Lims::Core::Actions (module)">Actions</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../ActionGroup.html" title="Lims::Core::Actions::ActionGroup (module)">ActionGroup</a></span></span>
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+ &raquo;
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+ <span class="title">AfterEval</span>
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+ <div id="search">
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+
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+ <a id="class_list_link" href="#">Class List</a>
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+ </div>
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+ <div class="clear"></div>
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+ </div>
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+
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+ <iframe id="search_frame"></iframe>
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+
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+ <div id="content"><h1>Module: Lims::Core::Actions::ActionGroup::AfterEval
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+
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+ </h1>
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+ <dl class="box">
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+
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+ <dt class="r1 last">Defined in:</dt>
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+ <dd class="r1 last">lib/lims-core/actions/action_group.rb</dd>
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+
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+ </dl>
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+ <div class="clear"></div>
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+
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+ <h2>Overview</h2><div class="docstring">
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+ <div class="discussion">
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+
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+ <p>This module is needed otherwire the following methogs will be overriden by
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+ the mixin called in self.included.</p>
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+ </div>
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+ </div>
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+ <div class="tags">
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+ <h2>
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+ Instance Method Summary
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+ <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
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+ </h2>
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+ <ul class="summary">
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+
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+ <li class="public ">
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+ <span class="summary_signature">
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+
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+ <a href="#_call_in_session-instance_method" title="#_call_in_session (instance method)">- (Object) <strong>_call_in_session</strong>(session) </a>
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+ <span class="summary_desc"><div class='inline'></div></span>
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+ </li>
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+ <li class="public ">
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+ <span class="summary_signature">
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+
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+ <a href="#execute_and_store_result-instance_method" title="#execute_and_store_result (instance method)">- (Object) <strong>execute_and_store_result</strong>(session, &amp;after_save) </a>
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+ </span>
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+ <span class="summary_desc"><div class='inline'>
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+ <p>We need to override call to process all the after_save once all actions
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+ have been executed.</p>
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+ </div></span>
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+
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+ </li>
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+
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+ <li class="public ">
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+ <span class="summary_signature">
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+
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+ <a href="#update_action_attribute-instance_method" title="#update_action_attribute (instance method)">- (Object) <strong>update_action_attribute</strong>(action) </a>
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+ </span>
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+ <span class="summary_desc"><div class='inline'>
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+ <p>Set the required attribute of the children action to the parent one.</p>
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+ </div></span>
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+ </li>
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+ </ul>
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+ <div id="instance_method_details" class="method_details_list">
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+ <h2>Instance Method Details</h2>
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+
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+
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+ <div class="method_details first">
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+ <p class="signature first" id="_call_in_session-instance_method">
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+
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+ - (<tt><span class='object_link'><a href="../../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>_call_in_session</strong>(session)
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+
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+
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+ </p><table class="source_code">
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+ <tr>
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/lims-core/actions/action_group.rb', line 34</span>
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+
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+ <span class='kw'>def</span> <span class='id _call_in_session'>_call_in_session</span><span class='lparen'>(</span><span class='id session'>session</span><span class='rparen'>)</span>
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+ <span class='id actions'>actions</span><span class='period'>.</span><span class='id map'>map</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id action'>action</span><span class='op'>|</span>
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+ <span class='id update_action_attribute'>update_action_attribute</span><span class='lparen'>(</span><span class='id action'>action</span><span class='rparen'>)</span>
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+ <span class='id action'>action</span><span class='period'>.</span><span class='id with_session'>with_session</span><span class='lparen'>(</span><span class='id session'>session</span><span class='rparen'>)</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id new_session'>new_session</span><span class='op'>|</span>
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+ <span class='id action'>action</span><span class='period'>.</span><span class='id execute_and_store_result'>execute_and_store_result</span><span class='lparen'>(</span><span class='id new_session'>new_session</span><span class='rparen'>)</span>
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+ <span class='id action'>action</span><span class='period'>.</span><span class='id result'>result</span>
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+ <span class='kw'>end</span>
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+ <span class='kw'>end</span>
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+ <span class='kw'>end</span></pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+ <div class="method_details ">
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+ <p class="signature " id="execute_and_store_result-instance_method">
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+
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+ - (<tt><span class='object_link'><a href="../../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>execute_and_store_result</strong>(session, &amp;after_save)
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+
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+ </p><div class="docstring">
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+ <div class="discussion">
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+
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+ <p>We need to override call to process all the after_save once all actions
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+ have been executed</p>
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+
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+ </div>
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+ </div>
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+ <div class="tags">
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/lims-core/actions/action_group.rb', line 28</span>
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+
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+ <span class='kw'>def</span> <span class='id execute_and_store_result'>execute_and_store_result</span><span class='lparen'>(</span><span class='id session'>session</span><span class='comma'>,</span> <span class='op'>&amp;</span><span class='id after_save'>after_save</span><span class='rparen'>)</span>
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+ <span class='id after_save'>after_save</span> <span class='op'>||=</span> <span class='id lambda'>lambda</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id a'>a</span><span class='comma'>,</span><span class='id s'>s</span><span class='op'>|</span> <span class='id a'>a</span><span class='period'>.</span><span class='id result'>result</span> <span class='rbrace'>}</span>
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+ <span class='kw'>self</span><span class='period'>.</span><span class='id result'>result</span> <span class='op'>=</span> <span class='id _call_in_session'>_call_in_session</span><span class='lparen'>(</span><span class='id session'>session</span><span class='rparen'>)</span>
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+ <span class='id lambda'>lambda</span> <span class='lbrace'>{</span> <span class='id after_save'>after_save</span><span class='lbracket'>[</span><span class='kw'>self</span><span class='comma'>,</span> <span class='id session'>session</span><span class='rbracket'>]</span> <span class='rbrace'>}</span>
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+ <span class='kw'>end</span></pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+
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+ <div class="method_details ">
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+ <p class="signature " id="update_action_attribute-instance_method">
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+
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+ - (<tt><span class='object_link'><a href="../../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>update_action_attribute</strong>(action)
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+
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+
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+
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+ </p><div class="docstring">
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+ <div class="discussion">
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+
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+ <p>Set the required attribute of the children action to the parent one.</p>
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+
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+
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+ </div>
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+ </div>
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+ <div class="tags">
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+
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+
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+ </div><table class="source_code">
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+ <tr>
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+ <td>
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+ <pre class="lines">
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+ 46
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+ 47
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+ 48
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+ 49
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+ 50</pre>
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/lims-core/actions/action_group.rb', line 46</span>
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+
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+ <span class='kw'>def</span> <span class='id update_action_attribute'>update_action_attribute</span><span class='lparen'>(</span><span class='id action'>action</span><span class='rparen'>)</span>
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+ <span class='qwords_beg'>%w(</span><span class='tstring_content'>store</span><span class='words_sep'> </span><span class='tstring_content'>user</span><span class='words_sep'> </span><span class='tstring_content'>application</span><span class='words_sep'>)</span><span class='period'>.</span><span class='id each'>each</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id attribute'>attribute</span><span class='op'>|</span>
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+ <span class='id action'>action</span><span class='lbracket'>[</span><span class='id attribute'>attribute</span><span class='rbracket'>]</span><span class='op'>=</span><span class='kw'>self</span><span class='lbracket'>[</span><span class='id attribute'>attribute</span><span class='rbracket'>]</span>
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+ <span class='kw'>end</span>
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+ <span class='kw'>end</span></pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+
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+ </div>
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+
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+ </div>
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+ </body>
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+ </html>
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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+ <title>
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+ Module: Lims::Core::Actions::BulkAction
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+
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+ &mdash; Documentation by YARD 0.7.3
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+
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+ </title>
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+
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+ <link rel="stylesheet" href="../../../css/style.css" type="text/css" media="screen" charset="utf-8" />
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+
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+ <link rel="stylesheet" href="../../../css/common.css" type="text/css" media="screen" charset="utf-8" />
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+
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+ <script type="text/javascript" charset="utf-8">
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+ relpath = '../../..';
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+ if (relpath != '') relpath += '/';
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+ </script>
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+
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+ <script type="text/javascript" charset="utf-8" src="../../../js/jquery.js"></script>
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+
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+ <script type="text/javascript" charset="utf-8" src="../../../js/app.js"></script>
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+
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+
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+ </head>
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+ <body>
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+ <script type="text/javascript" charset="utf-8">
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+ if (window.top.frames.main) document.body.className = 'frames';
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+ </script>
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+
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+ <div id="header">
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+ <div id="menu">
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+
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+ <a href="../../../_index.html">Index (B)</a> &raquo;
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+ <span class='title'><span class='object_link'><a href="../../../Lims.html" title="Lims (module)">Lims</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../../Core.html" title="Lims::Core (module)">Core</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../Actions.html" title="Lims::Core::Actions (module)">Actions</a></span></span>
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+ &raquo;
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+ <span class="title">BulkAction</span>
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+
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+
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+ <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
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+ </div>
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+
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+ <div id="search">
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+
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+ <a id="class_list_link" href="#">Class List</a>
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+
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+ <a id="method_list_link" href="#">Method List</a>
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+
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+ <a id="file_list_link" href="#">File List</a>
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+
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+ </div>
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+ <div class="clear"></div>
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+ </div>
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+
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+ <iframe id="search_frame"></iframe>
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+
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+ <div id="content"><h1>Module: Lims::Core::Actions::BulkAction
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+
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+
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+
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+ </h1>
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+
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+ <dl class="box">
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+
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+
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+
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+
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+
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+
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+
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+
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+ <dt class="r1 last">Defined in:</dt>
75
+ <dd class="r1 last">lib/lims-core/actions/bulk_action.rb</dd>
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+
77
+ </dl>
78
+ <div class="clear"></div>
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+
80
+ <h2>Overview</h2><div class="docstring">
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+ <div class="discussion">
82
+
83
+ <p><b>Lift</b> an action to a bulk one by creating a group of similar actions.
84
+ The parameters being a array of parameters which will be used to create
85
+ each individual action.</p>
86
+
87
+
88
+ </div>
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+ </div>
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+ <div class="tags">
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+
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+
93
+ </div><h2>Defined Under Namespace</h2>
94
+ <p class="children">
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+
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+
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+ <strong class="modules">Modules:</strong> <span class='object_link'><a href="BulkAction/AfterEval.html" title="Lims::Core::Actions::BulkAction::AfterEval (module)">AfterEval</a></span>
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+
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+
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+
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+
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+ </p>
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+
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+
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+
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+
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+
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+
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+ <h2>
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+ Class Method Summary
111
+ <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
112
+ </h2>
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+
114
+ <ul class="summary">
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+
116
+ <li class="public ">
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+ <span class="summary_signature">
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+
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+ <a href="#included-class_method" title="included (class method)">+ (Object) <strong>included</strong>(klass) </a>
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+
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+
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+
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+ </span>
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+
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+
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+
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+
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+
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+
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+
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+
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+ <span class="summary_desc"><div class='inline'></div></span>
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+
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+ </li>
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+
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+
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+ </ul>
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+
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+
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+
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+
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+ <div id="class_method_details" class="method_details_list">
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+ <h2>Class Method Details</h2>
144
+
145
+
146
+ <div class="method_details first">
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+ <p class="signature first" id="included-class_method">
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+
149
+ + (<tt><span class='object_link'><a href="../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>included</strong>(klass)
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+
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+
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+
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+ </p><table class="source_code">
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+ <tr>
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+ <td>
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+ <pre class="lines">
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+
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+
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+ 10
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+ 11
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+ 32
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+ 33
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+ 34</pre>
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/lims-core/actions/bulk_action.rb', line 10</span>
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+
188
+ <span class='kw'>def</span> <span class='kw'>self</span><span class='period'>.</span><span class='id included'>included</span><span class='lparen'>(</span><span class='id klass'>klass</span><span class='rparen'>)</span>
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+ <span class='id klass'>klass</span><span class='period'>.</span><span class='id instance_eval'>instance_eval</span> <span class='kw'>do</span>
190
+ <span class='comment'># @param [String] element_name name of the underlying action. Use to get the result from the subaction element.
191
+ </span> <span class='comment'># @param [String] parameters key to get parameters array for each action and return the result.
192
+ </span> <span class='kw'>def</span> <span class='id initialize_class'>initialize_class</span><span class='lparen'>(</span><span class='id element_name'>element_name</span><span class='comma'>,</span> <span class='id group_name'>group_name</span><span class='comma'>,</span> <span class='id action_class'>action_class</span><span class='rparen'>)</span>
193
+ <span class='id define_method'>define_method</span> <span class='symbol'>:group_name</span> <span class='kw'>do</span>
194
+ <span class='id group_name'>group_name</span>
195
+ <span class='kw'>end</span>
196
+
197
+ <span class='id define_method'>define_method</span> <span class='symbol'>:action_class</span> <span class='kw'>do</span>
198
+ <span class='id action_class'>action_class</span>
199
+ <span class='kw'>end</span>
200
+
201
+ <span class='id define_method'>define_method</span> <span class='symbol'>:element_name</span> <span class='kw'>do</span>
202
+ <span class='id element_name'>element_name</span>
203
+ <span class='kw'>end</span>
204
+
205
+ <span class='kw'>self</span><span class='period'>.</span><span class='id class_eval'>class_eval</span> <span class='kw'>do</span>
206
+ <span class='id include'>include</span> <span class='const'>ActionGroup</span>
207
+ <span class='id attribute'>attribute</span> <span class='id group_name'>group_name</span><span class='comma'>,</span> <span class='const'>Array</span><span class='comma'>,</span> <span class='symbol'>:required</span> <span class='op'>=&gt;</span> <span class='kw'>true</span>
208
+ <span class='id include'>include</span> <span class='const'>AfterEval</span>
209
+ <span class='kw'>end</span>
210
+ <span class='kw'>end</span>
211
+ <span class='kw'>end</span>
212
+ <span class='kw'>end</span></pre>
213
+ </td>
214
+ </tr>
215
+ </table>
216
+ </div>
217
+
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+ </div>
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+
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+ </div>
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+
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+
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+ </body>
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+ </html>