RubyGems - lims-core - Versions diffs - 3.2.3 - Mend

lims-core 3.2.3

Files changed (177) hide show

checksums.yaml +15 -0
data/.gitignore +5 -0
data/.rspec +1 -0
data/.rvmrc +2 -0
data/.travis.yml +2 -0
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data/.yard_templates/default/layout/html/footer.erb +0 -0
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data/Guardfile +21 -0
data/Guardfile.tmux +28 -0
data/README.markdown +67 -0
data/Rakefile +16 -0
data/config/database.yml +16 -0
data/doc/Array.html +116 -0
data/doc/Array/ArrayLoggerPersistor.html +152 -0
data/doc/Lims.html +114 -0
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data/doc/Lims/Core/Persistence.html +267 -0
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data/doc/Lims/Core/Persistence/Logger/Store.html +470 -0
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data/doc/Lims/Core/Persistence/MessageBus/ConnectionError.html +123 -0
data/doc/Lims/Core/Persistence/MessageBus/InvalidSettingsError.html +122 -0
data/doc/Lims/Core/Persistence/MultiCriteriaFilter.html +293 -0
data/doc/Lims/Core/Persistence/PersistAssociationTrait.html +91 -0
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data/doc/Lims/Core/Persistence/Sequel/Filters.html +462 -0
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data/lib/common.rb +18 -0
data/lib/lims-core.rb +29 -0
data/lib/lims-core/actions.rb +10 -0
data/lib/lims-core/actions/action.rb +185 -0
data/lib/lims-core/actions/action_group.rb +54 -0
data/lib/lims-core/actions/bulk_action.rb +65 -0
data/lib/lims-core/base.rb +132 -0
data/lib/lims-core/helpers.rb +41 -0
data/lib/lims-core/persistence.rb +15 -0
data/lib/lims-core/persistence/comparison_filter.rb +54 -0
data/lib/lims-core/persistence/filter.rb +23 -0
data/lib/lims-core/persistence/identity_map.rb +55 -0
data/lib/lims-core/persistence/logger/all.rb +5 -0
data/lib/lims-core/persistence/logger/persistor.rb +35 -0
data/lib/lims-core/persistence/logger/session.rb +30 -0
data/lib/lims-core/persistence/logger/store.rb +37 -0
data/lib/lims-core/persistence/message_bus.rb +131 -0
data/lib/lims-core/persistence/multi_criteria_filter.rb +50 -0
data/lib/lims-core/persistence/persist_association_trait.rb +96 -0
data/lib/lims-core/persistence/persistable_trait.rb +150 -0
data/lib/lims-core/persistence/persistor.rb +495 -0
data/lib/lims-core/persistence/resource_state.rb +157 -0
data/lib/lims-core/persistence/search.rb +3 -0
data/lib/lims-core/persistence/search/all.rb +3 -0
data/lib/lims-core/persistence/search/create_search.rb +55 -0
data/lib/lims-core/persistence/search/search_persistor.rb +45 -0
data/lib/lims-core/persistence/search/search_sequel_persistor.rb +40 -0
data/lib/lims-core/persistence/sequel.rb +14 -0
data/lib/lims-core/persistence/sequel/filters.rb +106 -0
data/lib/lims-core/persistence/sequel/migrations.rb +14 -0
data/lib/lims-core/persistence/sequel/migrations/add_audit_tables.rb +147 -0
data/lib/lims-core/persistence/sequel/migrations/initial.rb +156 -0
data/lib/lims-core/persistence/sequel/persistor.rb +200 -0
data/lib/lims-core/persistence/sequel/session.rb +136 -0
data/lib/lims-core/persistence/sequel/store.rb +37 -0
data/lib/lims-core/persistence/session.rb +409 -0
data/lib/lims-core/persistence/state_group.rb +97 -0
data/lib/lims-core/persistence/state_list.rb +56 -0
data/lib/lims-core/persistence/store.rb +73 -0
data/lib/lims-core/persistence/uuid_resource.rb +115 -0
data/lib/lims-core/persistence/uuid_resource_persistor.rb +43 -0
data/lib/lims-core/persistence/uuidable.rb +107 -0
data/lib/lims-core/resource.rb +21 -0
data/lib/lims-core/subclass_tracker.rb +30 -0
data/lib/lims-core/version.rb +5 -0
data/lims-core.gemspec +40 -0
data/makefile +52 -0
data/showoff/core-2012-06-11/core/01_slide.md +237 -0
data/showoff/core-2012-06-11/core/02_slide.md +110 -0
data/showoff/core-2012-06-11/custom.css +44 -0
data/showoff/core-2012-06-11/main/01_slide.md +53 -0
data/showoff/core-2012-06-11/showoff.json +10 -0
data/showoff/core-2012-06-11/tp1.tpl +1 -0
data/spec/actions/action_group_spec.rb +39 -0
data/spec/actions/spec_helper.rb +1 -0
data/spec/persistence/identity_map_spec.rb +55 -0
data/spec/persistence/logger/spec_helper.rb +7 -0
data/spec/persistence/logger/store_spec.rb +48 -0
data/spec/persistence/message_bus_spec.rb +76 -0
data/spec/persistence/sequel/session_spec.rb +125 -0
data/spec/persistence/sequel/spec_helper.rb +39 -0
data/spec/persistence/sequel/store_shared.rb +25 -0
data/spec/persistence/sequel/store_spec.rb +22 -0
data/spec/persistence/session_spec.rb +199 -0
data/spec/persistence/spec_helper.rb +2 -0
data/spec/persistence/uuid_resource_spec.rb +80 -0
data/spec/spec_helper.rb +10 -0
data/spec/subclass_tracker_sperc.rb +62 -0
data/utils/constant_tree.rb +29 -0
data/utils/stack.rb +48 -0
metadata +402 -0

data/doc/Lims/Core/Persistence/ComparisonFilter.html ADDED Viewed

@@ -0,0 +1,318 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+  <head>
+    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+<title>
+  Class: Lims::Core::Persistence::ComparisonFilter
+    &mdash; Documentation by YARD 0.7.3
+</title>
+  <link rel="stylesheet" href="../../../css/style.css" type="text/css" media="screen" charset="utf-8" />
+  <link rel="stylesheet" href="../../../css/common.css" type="text/css" media="screen" charset="utf-8" />
+<script type="text/javascript" charset="utf-8">
+  relpath = '../../..';
+  if (relpath != '') relpath += '/';
+</script>
+  <script type="text/javascript" charset="utf-8" src="../../../js/jquery.js"></script>
+  <script type="text/javascript" charset="utf-8" src="../../../js/app.js"></script>
+  </head>
+  <body>
+    <script type="text/javascript" charset="utf-8">
+      if (window.top.frames.main) document.body.className = 'frames';
+    </script>
+    <div id="header">
+      <div id="menu">
+    <a href="../../../_index.html">Index (C)</a> &raquo;
+    <span class='title'><span class='object_link'><a href="../../../Lims.html" title="Lims (module)">Lims</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../../Core.html" title="Lims::Core (module)">Core</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../Persistence.html" title="Lims::Core::Persistence (module)">Persistence</a></span></span>
+     &raquo;
+    <span class="title">ComparisonFilter</span>
+  <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
+</div>
+      <div id="search">
+    <a id="class_list_link" href="#">Class List</a>
+    <a id="method_list_link" href="#">Method List</a>
+    <a id="file_list_link" href="#">File List</a>
+</div>
+      <div class="clear"></div>
+    </div>
+    <iframe id="search_frame"></iframe>
+    <div id="content"><h1>Class: Lims::Core::Persistence::ComparisonFilter
+</h1>
+<dl class="box">
+    <dt class="r1">Inherits:</dt>
+    <dd class="r1">
+      <span class="inheritName"><span class='object_link'><a href="Filter.html" title="Lims::Core::Persistence::Filter (class)">Filter</a></span></span>
+        <ul class="fullTree">
+          <li><span class='object_link'><a href="../../../Object.html" title="Object (class)">Object</a></span></li>
+            <li class="next"><span class='object_link'><a href="Filter.html" title="Lims::Core::Persistence::Filter (class)">Filter</a></span></li>
+            <li class="next">Lims::Core::Persistence::ComparisonFilter</li>
+        </ul>
+        <a href="#" class="inheritanceTree">show all</a>
+      </dd>
+      <dt class="r2">Includes:</dt>
+      <dd class="r2"><span class='object_link'><a href="../Resource.html" title="Lims::Core::Resource (module)">Resource</a></span></dd>
+    <dt class="r1 last">Defined in:</dt>
+    <dd class="r1 last">lib/lims-core/persistence/comparison_filter.rb</dd>
+</dl>
+<div class="clear"></div>
+<h2>Overview</h2><div class="docstring">
+  <div class="discussion">
+<p>Filter performing a comparison between the resource field's value  and a
+given value. Key being the name of the resource's field and the value is a
+Hash. The key of the hash is a comparison operator and the value is the
+given value the filter do the comparison against.</p>
+<p>"model": "kit", "criteria": {</p>
+<pre class="code">&quot;comparison&quot;: {
+    &quot;expires&quot;: {
+        &quot;&gt;=&quot;: &quot;2013-04-24&quot;
+    }
+}</pre>
+<p>}</p>
+<p>Will look for all kits expires after the given date ("2013-04-24").</p>
+  </div>
+</div>
+<div class="tags">
+</div>
+  <h2>Constant Summary</h2>
+    <dl class="constants">
+        <dt id="NOT_IN_ROOT-constant" class="">NOT_IN_ROOT =
+        </dt>
+        <dd><pre class="code"><span class='int'>1</span></pre></dd>
+    </dl>
+    <h2>
+      Instance Method Summary
+      <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
+    </h2>
+    <ul class="summary">
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#call-instance_method" title="#call (instance method)">- (Object) <strong>call</strong>(persistor) </a>
+  </span>
+    <span class="summary_desc"><div class='inline'></div></span>
+</li>
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#initialize-instance_method" title="#initialize (instance method)">- (ComparisonFilter) <strong>initialize</strong>(criteria) </a>
+  </span>
+    <span class="note title constructor">constructor</span>
+    <span class="summary_desc"><div class='inline'>
+<p>For Sequel, keys needs to be a Symbol to be seen as column.</p>
+</div></span>
+</li>
+    </ul>
+  <h3 class="inherited">Methods included from <span class='object_link'><a href="../Resource.html" title="Lims::Core::Resource (module)">Resource</a></span></h3>
+  <p class="inherited"><span class='object_link'><a href="../Resource.html#included-class_method" title="Lims::Core::Resource.included (method)">included</a></span></p>
+  <div id="constructor_details" class="method_details_list">
+  <h2>Constructor Details</h2>
+    <div class="method_details first">
+  <p class="signature first" id="initialize-instance_method">
+    - (<tt><span class='object_link'><a href="" title="Lims::Core::Persistence::ComparisonFilter (class)">ComparisonFilter</a></span></tt>) <strong>initialize</strong>(criteria)
+</p><div class="docstring">
+  <div class="discussion">
+<p>For Sequel, keys needs to be a Symbol to be seen as column. String are seen
+as 'value'</p>
+  </div>
+</div>
+<div class="tags">
+</div><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+35
+36
+37
+38
+39</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/comparison_filter.rb', line 35</span>
+<span class='kw'>def</span> <span class='id initialize'>initialize</span><span class='lparen'>(</span><span class='id criteria'>criteria</span><span class='rparen'>)</span>
+  <span class='id criteria'>criteria</span> <span class='op'>=</span> <span class='lbrace'>{</span> <span class='symbol'>:criteria</span> <span class='op'>=&gt;</span> <span class='id criteria'>criteria</span> <span class='rbrace'>}</span> <span class='kw'>unless</span> <span class='id criteria'>criteria</span><span class='period'>.</span><span class='id include?'>include?</span><span class='lparen'>(</span><span class='symbol'>:criteria</span><span class='rparen'>)</span>
+  <span class='id criteria'>criteria</span><span class='lbracket'>[</span><span class='symbol'>:criteria</span><span class='rbracket'>]</span><span class='period'>.</span><span class='id rekey!'>rekey!</span><span class='lbrace'>{</span> <span class='op'>|</span><span class='id k'>k</span><span class='op'>|</span> <span class='id k'>k</span><span class='period'>.</span><span class='id to_sym'>to_sym</span> <span class='rbrace'>}</span>
+  <span class='kw'>super</span><span class='lparen'>(</span><span class='id criteria'>criteria</span><span class='rparen'>)</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+</div>
+  <div id="instance_method_details" class="method_details_list">
+    <h2>Instance Method Details</h2>
+      <div class="method_details first">
+  <p class="signature first" id="call-instance_method">
+    - (<tt><span class='object_link'><a href="../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>call</strong>(persistor)
+</p><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+41
+42
+43</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/comparison_filter.rb', line 41</span>
+<span class='kw'>def</span> <span class='id call'>call</span><span class='lparen'>(</span><span class='id persistor'>persistor</span><span class='rparen'>)</span>
+  <span class='id persistor'>persistor</span><span class='period'>.</span><span class='id comparison_filter'>comparison_filter</span><span class='lparen'>(</span><span class='id criteria'>criteria</span><span class='lbracket'>[</span><span class='symbol'>:comparison</span><span class='rbracket'>]</span><span class='rparen'>)</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+  </div>
+</div>
+  </body>
+</html>

data/doc/Lims/Core/Persistence/Filter.html ADDED Viewed

@@ -0,0 +1,252 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+  <head>
+    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+<title>
+  Class: Lims::Core::Persistence::Filter
+    &mdash; Documentation by YARD 0.7.3
+</title>
+  <link rel="stylesheet" href="../../../css/style.css" type="text/css" media="screen" charset="utf-8" />
+  <link rel="stylesheet" href="../../../css/common.css" type="text/css" media="screen" charset="utf-8" />
+<script type="text/javascript" charset="utf-8">
+  relpath = '../../..';
+  if (relpath != '') relpath += '/';
+</script>
+  <script type="text/javascript" charset="utf-8" src="../../../js/jquery.js"></script>
+  <script type="text/javascript" charset="utf-8" src="../../../js/app.js"></script>
+  </head>
+  <body>
+    <script type="text/javascript" charset="utf-8">
+      if (window.top.frames.main) document.body.className = 'frames';
+    </script>
+    <div id="header">
+      <div id="menu">
+    <a href="../../../_index.html">Index (F)</a> &raquo;
+    <span class='title'><span class='object_link'><a href="../../../Lims.html" title="Lims (module)">Lims</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../../Core.html" title="Lims::Core (module)">Core</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../Persistence.html" title="Lims::Core::Persistence (module)">Persistence</a></span></span>
+     &raquo;
+    <span class="title">Filter</span>
+  <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
+</div>
+      <div id="search">
+    <a id="class_list_link" href="#">Class List</a>
+    <a id="method_list_link" href="#">Method List</a>
+    <a id="file_list_link" href="#">File List</a>
+</div>
+      <div class="clear"></div>
+    </div>
+    <iframe id="search_frame"></iframe>
+    <div id="content"><h1>Class: Lims::Core::Persistence::Filter
+  <span class="abstract note title">Abstract</span>
+</h1>
+<dl class="box">
+    <dt class="r1">Inherits:</dt>
+    <dd class="r1">
+      <span class="inheritName"><span class='object_link'><a href="../../../Object.html" title="Object (class)">Object</a></span></span>
+        <ul class="fullTree">
+          <li><span class='object_link'><a href="../../../Object.html" title="Object (class)">Object</a></span></li>
+            <li class="next">Lims::Core::Persistence::Filter</li>
+        </ul>
+        <a href="#" class="inheritanceTree">show all</a>
+      </dd>
+    <dt class="r2 last">Defined in:</dt>
+    <dd class="r2 last">lib/lims-core/persistence/filter.rb</dd>
+</dl>
+<div class="clear"></div>
+<h2>Overview</h2><div class="docstring">
+  <div class="discussion">
+    <div class="note abstract">
+  <strong>This class is abstract.</strong>
+  <div class='inline'>
+<p>Base class of all filters.</p>
+</div>
+</div>
+<p>A filter acts on persistors and can be chained. Note: This class is not
+really usefull in a *Ruby world* and is mainly here for documentation.</p>
+  </div>
+</div>
+<div class="tags">
+</div><div id="subclasses">
+  <h2>Direct Known Subclasses</h2>
+  <p class="children"><span class='object_link'><a href="ComparisonFilter.html" title="Lims::Core::Persistence::ComparisonFilter (class)">ComparisonFilter</a></span>, <span class='object_link'><a href="MultiCriteriaFilter.html" title="Lims::Core::Persistence::MultiCriteriaFilter (class)">MultiCriteriaFilter</a></span></p>
+</div>
+    <h2>
+      Instance Method Summary
+      <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
+    </h2>
+    <ul class="summary">
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#call-instance_method" title="#call (instance method)">- (Persistor) <strong>call</strong>(persistor) </a>
+  </span>
+    <span class="summary_desc"><div class='inline'>
+<p>Transform a persistor to a "filtered persistor" The filtered persistor
+loading only the filtered object.</p>
+</div></span>
+</li>
+    </ul>
+  <div id="instance_method_details" class="method_details_list">
+    <h2>Instance Method Details</h2>
+      <div class="method_details first">
+  <p class="signature first" id="call-instance_method">
+    - (<tt><span class='object_link'><a href="Persistor.html" title="Lims::Core::Persistence::Persistor (class)">Persistor</a></span></tt>) <strong>call</strong>(persistor)
+</p><div class="docstring">
+  <div class="discussion">
+<p>Transform a persistor to a "filtered persistor" The filtered persistor
+loading only the filtered object. Note that the actual implementation of
+the filter depends on the  <b>type</b> of the persistor (Sequel for
+example).</p>
+  </div>
+</div>
+<div class="tags">
+  <h3>Parameters:</h3>
+<ul class="param">
+    <li>
+        <span class='name'>persistor</span>
+        <span class='type'>(<tt><span class='object_link'><a href="Persistor.html" title="Lims::Core::Persistence::Persistor (class)">Persistence::Persistor</a></span></tt>)</span>
+    </li>
+</ul>
+<h3>Returns:</h3>
+<ul class="return">
+    <li>
+        <span class='type'>(<tt><span class='object_link'><a href="Persistor.html" title="Lims::Core::Persistence::Persistor (class)">Persistor</a></span></tt>)</span>
+    </li>
+</ul>
+<h3>Raises:</h3>
+<ul class="raise">
+    <li>
+        <span class='type'>(<tt>NotImplementedError</tt>)</span>
+    </li>
+</ul>
+</div><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+17
+18
+19</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/filter.rb', line 17</span>
+<span class='kw'>def</span> <span class='id call'>call</span><span class='lparen'>(</span><span class='id persistor'>persistor</span><span class='rparen'>)</span>
+  <span class='id raise'>raise</span> <span class='const'>NotImplementedError</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+  </div>
+</div>
+  </body>
+</html>