RubyGems - lims-core - Versions diffs - 3.2.3 - Mend

lims-core 3.2.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (177) hide show

checksums.yaml +15 -0
data/.gitignore +5 -0
data/.rspec +1 -0
data/.rvmrc +2 -0
data/.travis.yml +2 -0
data/.vimrc +27 -0
data/.yard_templates/default/layout/html/footer.erb +0 -0
data/.yardopts +1 -0
data/Gemfile +54 -0
data/Gemfile.lock +197 -0
data/Guardfile +21 -0
data/Guardfile.tmux +28 -0
data/README.markdown +67 -0
data/Rakefile +16 -0
data/config/database.yml +16 -0
data/doc/Array.html +116 -0
data/doc/Array/ArrayLoggerPersistor.html +152 -0
data/doc/Lims.html +114 -0
data/doc/Lims/Core.html +178 -0
data/doc/Lims/Core/Action.html +91 -0
data/doc/Lims/Core/Actions.html +116 -0
data/doc/Lims/Core/Actions/Action.html +216 -0
data/doc/Lims/Core/Actions/Action/AfterEval.html +853 -0
data/doc/Lims/Core/Actions/Action/InvalidParameters.html +268 -0
data/doc/Lims/Core/Actions/ActionGroup.html +196 -0
data/doc/Lims/Core/Actions/ActionGroup/AfterEval.html +315 -0
data/doc/Lims/Core/Actions/BulkAction.html +224 -0
data/doc/Lims/Core/Actions/BulkAction/AfterEval.html +253 -0
data/doc/Lims/Core/Actions/TestActionGroup.html +101 -0
data/doc/Lims/Core/Actions/TestActionGroup/Action.html +133 -0
data/doc/Lims/Core/Actions/TestActionGroup/ActionGroup.html +127 -0
data/doc/Lims/Core/Base.html +287 -0
data/doc/Lims/Core/Base/AccessibleViaSuper.html +252 -0
data/doc/Lims/Core/Base/ClassMethod.html +177 -0
data/doc/Lims/Core/Base/HashString.html +177 -0
data/doc/Lims/Core/Base/IsArrayOf.html +606 -0
data/doc/Lims/Core/Base/State.html +130 -0
data/doc/Lims/Core/Organization.html +113 -0
data/doc/Lims/Core/Organization/Batch.html +106 -0
data/doc/Lims/Core/Persistence.html +267 -0
data/doc/Lims/Core/Persistence/ComparisonFilter.html +318 -0
data/doc/Lims/Core/Persistence/Filter.html +252 -0
data/doc/Lims/Core/Persistence/IdentityMap.html +409 -0
data/doc/Lims/Core/Persistence/IdentityMap/Class.html +144 -0
data/doc/Lims/Core/Persistence/IdentityMap/DuplicateError.html +126 -0
data/doc/Lims/Core/Persistence/IdentityMap/DuplicateIdError.html +136 -0
data/doc/Lims/Core/Persistence/IdentityMap/DuplicateObjectError.html +136 -0
data/doc/Lims/Core/Persistence/IdentityMapClass.html +133 -0
data/doc/Lims/Core/Persistence/Logger.html +105 -0
data/doc/Lims/Core/Persistence/Logger/Persistor.html +334 -0
data/doc/Lims/Core/Persistence/Logger/Session.html +452 -0
data/doc/Lims/Core/Persistence/Logger/Store.html +470 -0
data/doc/Lims/Core/Persistence/MessageBus.html +871 -0
data/doc/Lims/Core/Persistence/MessageBus/ConnectionError.html +123 -0
data/doc/Lims/Core/Persistence/MessageBus/InvalidSettingsError.html +122 -0
data/doc/Lims/Core/Persistence/MultiCriteriaFilter.html +293 -0
data/doc/Lims/Core/Persistence/PersistAssociationTrait.html +91 -0
data/doc/Lims/Core/Persistence/PersistableTrait.html +91 -0
data/doc/Lims/Core/Persistence/Persistor.html +3072 -0
data/doc/Lims/Core/Persistence/Persistor/DuplicateError.html +205 -0
data/doc/Lims/Core/Persistence/Persistor/DuplicateIdError.html +147 -0
data/doc/Lims/Core/Persistence/Persistor/DuplicateObjectError.html +147 -0
data/doc/Lims/Core/Persistence/PersistorTrait.html +91 -0
data/doc/Lims/Core/Persistence/ResourceState.html +1738 -0
data/doc/Lims/Core/Persistence/Search.html +269 -0
data/doc/Lims/Core/Persistence/Search/CreateSearch.html +251 -0
data/doc/Lims/Core/Persistence/Search/SearchPersistor.html +240 -0
data/doc/Lims/Core/Persistence/Search/SearchSequelPersistor.html +396 -0
data/doc/Lims/Core/Persistence/Sequel.html +117 -0
data/doc/Lims/Core/Persistence/Sequel/Filters.html +462 -0
data/doc/Lims/Core/Persistence/Sequel/ForTest.html +101 -0
data/doc/Lims/Core/Persistence/Sequel/ForTest/Name.html +137 -0
data/doc/Lims/Core/Persistence/Sequel/ForTest/Name/NamePersitor.html +143 -0
data/doc/Lims/Core/Persistence/Sequel/Migrations.html +266 -0
data/doc/Lims/Core/Persistence/Sequel/Persistor.html +665 -0
data/doc/Lims/Core/Persistence/Sequel/Session.html +501 -0
data/doc/Lims/Core/Persistence/Sequel/Store.html +417 -0
data/doc/Lims/Core/Persistence/Session.html +2751 -0
data/doc/Lims/Core/Persistence/Session/UnmanagedObjectError.html +111 -0
data/doc/Lims/Core/Persistence/StateGroup.html +696 -0
data/doc/Lims/Core/Persistence/StateList.html +498 -0
data/doc/Lims/Core/Persistence/Store.html +695 -0
data/doc/Lims/Core/Persistence/UuidResource.html +1044 -0
data/doc/Lims/Core/Persistence/UuidResource/InvalidUuidError.html +111 -0
data/doc/Lims/Core/Persistence/UuidResource/UuidResourcePersistor.html +337 -0
data/doc/Lims/Core/Persistence/Uuidable.html +799 -0
data/doc/Lims/Core/Persistor.html +320 -0
data/doc/Lims/Core/Resource.html +165 -0
data/doc/Object.html +228 -0
data/doc/SessionSpec.html +101 -0
data/doc/SessionSpec/Model.html +279 -0
data/doc/SessionSpec/Model/ModelPersistor.html +327 -0
data/doc/_index.html +732 -0
data/doc/class_list.html +47 -0
data/doc/css/common.css +1 -0
data/doc/css/full_list.css +55 -0
data/doc/css/style.css +322 -0
data/doc/file.README.html +127 -0
data/doc/file_list.html +49 -0
data/doc/frames.html +13 -0
data/doc/index.html +127 -0
data/doc/js/app.js +205 -0
data/doc/js/full_list.js +167 -0
data/doc/js/jquery.js +16 -0
data/doc/method_list.html +1894 -0
data/doc/top-level-namespace.html +100 -0
data/lib/common.rb +18 -0
data/lib/lims-core.rb +29 -0
data/lib/lims-core/actions.rb +10 -0
data/lib/lims-core/actions/action.rb +185 -0
data/lib/lims-core/actions/action_group.rb +54 -0
data/lib/lims-core/actions/bulk_action.rb +65 -0
data/lib/lims-core/base.rb +132 -0
data/lib/lims-core/helpers.rb +41 -0
data/lib/lims-core/persistence.rb +15 -0
data/lib/lims-core/persistence/comparison_filter.rb +54 -0
data/lib/lims-core/persistence/filter.rb +23 -0
data/lib/lims-core/persistence/identity_map.rb +55 -0
data/lib/lims-core/persistence/logger/all.rb +5 -0
data/lib/lims-core/persistence/logger/persistor.rb +35 -0
data/lib/lims-core/persistence/logger/session.rb +30 -0
data/lib/lims-core/persistence/logger/store.rb +37 -0
data/lib/lims-core/persistence/message_bus.rb +131 -0
data/lib/lims-core/persistence/multi_criteria_filter.rb +50 -0
data/lib/lims-core/persistence/persist_association_trait.rb +96 -0
data/lib/lims-core/persistence/persistable_trait.rb +150 -0
data/lib/lims-core/persistence/persistor.rb +495 -0
data/lib/lims-core/persistence/resource_state.rb +157 -0
data/lib/lims-core/persistence/search.rb +3 -0
data/lib/lims-core/persistence/search/all.rb +3 -0
data/lib/lims-core/persistence/search/create_search.rb +55 -0
data/lib/lims-core/persistence/search/search_persistor.rb +45 -0
data/lib/lims-core/persistence/search/search_sequel_persistor.rb +40 -0
data/lib/lims-core/persistence/sequel.rb +14 -0
data/lib/lims-core/persistence/sequel/filters.rb +106 -0
data/lib/lims-core/persistence/sequel/migrations.rb +14 -0
data/lib/lims-core/persistence/sequel/migrations/add_audit_tables.rb +147 -0
data/lib/lims-core/persistence/sequel/migrations/initial.rb +156 -0
data/lib/lims-core/persistence/sequel/persistor.rb +200 -0
data/lib/lims-core/persistence/sequel/session.rb +136 -0
data/lib/lims-core/persistence/sequel/store.rb +37 -0
data/lib/lims-core/persistence/session.rb +409 -0
data/lib/lims-core/persistence/state_group.rb +97 -0
data/lib/lims-core/persistence/state_list.rb +56 -0
data/lib/lims-core/persistence/store.rb +73 -0
data/lib/lims-core/persistence/uuid_resource.rb +115 -0
data/lib/lims-core/persistence/uuid_resource_persistor.rb +43 -0
data/lib/lims-core/persistence/uuidable.rb +107 -0
data/lib/lims-core/resource.rb +21 -0
data/lib/lims-core/subclass_tracker.rb +30 -0
data/lib/lims-core/version.rb +5 -0
data/lims-core.gemspec +40 -0
data/makefile +52 -0
data/showoff/core-2012-06-11/core/01_slide.md +237 -0
data/showoff/core-2012-06-11/core/02_slide.md +110 -0
data/showoff/core-2012-06-11/custom.css +44 -0
data/showoff/core-2012-06-11/main/01_slide.md +53 -0
data/showoff/core-2012-06-11/showoff.json +10 -0
data/showoff/core-2012-06-11/tp1.tpl +1 -0
data/spec/actions/action_group_spec.rb +39 -0
data/spec/actions/spec_helper.rb +1 -0
data/spec/persistence/identity_map_spec.rb +55 -0
data/spec/persistence/logger/spec_helper.rb +7 -0
data/spec/persistence/logger/store_spec.rb +48 -0
data/spec/persistence/message_bus_spec.rb +76 -0
data/spec/persistence/sequel/session_spec.rb +125 -0
data/spec/persistence/sequel/spec_helper.rb +39 -0
data/spec/persistence/sequel/store_shared.rb +25 -0
data/spec/persistence/sequel/store_spec.rb +22 -0
data/spec/persistence/session_spec.rb +199 -0
data/spec/persistence/spec_helper.rb +2 -0
data/spec/persistence/uuid_resource_spec.rb +80 -0
data/spec/spec_helper.rb +10 -0
data/spec/subclass_tracker_sperc.rb +62 -0
data/utils/constant_tree.rb +29 -0
data/utils/stack.rb +48 -0
metadata +402 -0

data/doc/Lims/Core/Persistor.html ADDED Viewed

@@ -0,0 +1,320 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+  <head>
+    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+<title>
+  Class: Lims::Core::Persistor
+    &mdash; Documentation by YARD 0.7.3
+</title>
+  <link rel="stylesheet" href="../../css/style.css" type="text/css" media="screen" charset="utf-8" />
+  <link rel="stylesheet" href="../../css/common.css" type="text/css" media="screen" charset="utf-8" />
+<script type="text/javascript" charset="utf-8">
+  relpath = '../..';
+  if (relpath != '') relpath += '/';
+</script>
+  <script type="text/javascript" charset="utf-8" src="../../js/jquery.js"></script>
+  <script type="text/javascript" charset="utf-8" src="../../js/app.js"></script>
+  </head>
+  <body>
+    <script type="text/javascript" charset="utf-8">
+      if (window.top.frames.main) document.body.className = 'frames';
+    </script>
+    <div id="header">
+      <div id="menu">
+    <a href="../../_index.html">Index (P)</a> &raquo;
+    <span class='title'><span class='object_link'><a href="../../Lims.html" title="Lims (module)">Lims</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../Core.html" title="Lims::Core (module)">Core</a></span></span>
+     &raquo;
+    <span class="title">Persistor</span>
+  <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
+</div>
+      <div id="search">
+    <a id="class_list_link" href="#">Class List</a>
+    <a id="method_list_link" href="#">Method List</a>
+    <a id="file_list_link" href="#">File List</a>
+</div>
+      <div class="clear"></div>
+    </div>
+    <iframe id="search_frame"></iframe>
+    <div id="content"><h1>Class: Lims::Core::Persistor
+</h1>
+<dl class="box">
+    <dt class="r1">Inherits:</dt>
+    <dd class="r1">
+      <span class="inheritName"><span class='object_link'><a href="../../Object.html" title="Object (class)">Object</a></span></span>
+        <ul class="fullTree">
+          <li><span class='object_link'><a href="../../Object.html" title="Object (class)">Object</a></span></li>
+            <li class="next">Lims::Core::Persistor</li>
+        </ul>
+        <a href="#" class="inheritanceTree">show all</a>
+      </dd>
+    <dt class="r2 last">Defined in:</dt>
+    <dd class="r2 last">lib/lims-core/persistence/comparison_filter.rb<span class="defines">,<br />
+  lib/lims-core/persistence/multi_criteria_filter.rb</span>
+</dd>
+</dl>
+<div class="clear"></div>
+    <h2>
+      Instance Method Summary
+      <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
+    </h2>
+    <ul class="summary">
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#comparison_filter-instance_method" title="#comparison_filter (instance method)">- (Persistor) <strong>comparison_filter</strong>(criteria) </a>
+  </span>
+    <span class="summary_desc"><div class='inline'></div></span>
+</li>
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#multi_criteria_filter-instance_method" title="#multi_criteria_filter (instance method)">- (Persistor) <strong>multi_criteria_filter</strong>(criteria) </a>
+  </span>
+    <span class="summary_desc"><div class='inline'></div></span>
+</li>
+    </ul>
+  <div id="instance_method_details" class="method_details_list">
+    <h2>Instance Method Details</h2>
+      <div class="method_details first">
+  <p class="signature first" id="comparison_filter-instance_method">
+    - (<tt><span class='object_link'><a href="" title="Lims::Core::Persistor (class)">Persistor</a></span></tt>) <strong>comparison_filter</strong>(criteria)
+</p><div class="docstring">
+  <div class="discussion">
+  </div>
+</div>
+<div class="tags">
+  <h3>Parameters:</h3>
+<ul class="param">
+    <li>
+        <span class='name'>criteria</span>
+        <span class='type'>(<tt>Hash</tt>)</span>
+        &mdash;
+        <div class='inline'>
+<p>a</p>
+</div>
+    </li>
+</ul>
+<h3>Returns:</h3>
+<ul class="return">
+    <li>
+        <span class='type'>(<tt><span class='object_link'><a href="" title="Lims::Core::Persistor (class)">Persistor</a></span></tt>)</span>
+    </li>
+</ul>
+<h3>Raises:</h3>
+<ul class="raise">
+    <li>
+        <span class='type'>(<tt>NotImplementedError</tt>)</span>
+    </li>
+</ul>
+</div><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+50
+51
+52</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/comparison_filter.rb', line 50</span>
+<span class='kw'>def</span> <span class='id comparison_filter'>comparison_filter</span><span class='lparen'>(</span><span class='id criteria'>criteria</span><span class='rparen'>)</span>
+  <span class='id raise'>raise</span> <span class='const'>NotImplementedError</span><span class='comma'>,</span> <span class='tstring'><span class='tstring_beg'>&quot;</span><span class='tstring_content'>comparison_filter methods needs to be implemented for subclass of Persistor</span><span class='tstring_end'>&quot;</span></span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+      <div class="method_details ">
+  <p class="signature " id="multi_criteria_filter-instance_method">
+    - (<tt><span class='object_link'><a href="" title="Lims::Core::Persistor (class)">Persistor</a></span></tt>) <strong>multi_criteria_filter</strong>(criteria)
+</p><div class="docstring">
+  <div class="discussion">
+  </div>
+</div>
+<div class="tags">
+  <h3>Parameters:</h3>
+<ul class="param">
+    <li>
+        <span class='name'>criteria</span>
+        <span class='type'>(<tt>Hash</tt>)</span>
+        &mdash;
+        <div class='inline'>
+<p>a</p>
+</div>
+    </li>
+</ul>
+<h3>Returns:</h3>
+<ul class="return">
+    <li>
+        <span class='type'>(<tt><span class='object_link'><a href="" title="Lims::Core::Persistor (class)">Persistor</a></span></tt>)</span>
+    </li>
+</ul>
+</div><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+46
+47
+48</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/multi_criteria_filter.rb', line 46</span>
+<span class='kw'>def</span> <span class='id multi_criteria_filter'>multi_criteria_filter</span><span class='lparen'>(</span><span class='id criteria'>criteria</span><span class='rparen'>)</span>
+  <span class='id raise'>raise</span> <span class='const'>NotImplementedError</span> <span class='tstring'><span class='tstring_beg'>&quot;</span><span class='tstring_content'>multi_criteria_filter methods needs to be implemented for subclass of Persistor</span><span class='tstring_end'>&quot;</span></span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+  </div>
+</div>
+  </body>
+</html>

data/doc/Lims/Core/Resource.html ADDED Viewed

@@ -0,0 +1,165 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+  <head>
+    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+<title>
+  Module: Lims::Core::Resource
+    &mdash; Documentation by YARD 0.7.3
+</title>
+  <link rel="stylesheet" href="../../css/style.css" type="text/css" media="screen" charset="utf-8" />
+  <link rel="stylesheet" href="../../css/common.css" type="text/css" media="screen" charset="utf-8" />
+<script type="text/javascript" charset="utf-8">
+  relpath = '../..';
+  if (relpath != '') relpath += '/';
+</script>
+  <script type="text/javascript" charset="utf-8" src="../../js/jquery.js"></script>
+  <script type="text/javascript" charset="utf-8" src="../../js/app.js"></script>
+  </head>
+  <body>
+    <script type="text/javascript" charset="utf-8">
+      if (window.top.frames.main) document.body.className = 'frames';
+    </script>
+    <div id="header">
+      <div id="menu">
+    <a href="../../_index.html">Index (R)</a> &raquo;
+    <span class='title'><span class='object_link'><a href="../../Lims.html" title="Lims (module)">Lims</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../Core.html" title="Lims::Core (module)">Core</a></span></span>
+     &raquo;
+    <span class="title">Resource</span>
+  <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
+</div>
+      <div id="search">
+    <a id="class_list_link" href="#">Class List</a>
+    <a id="method_list_link" href="#">Method List</a>
+    <a id="file_list_link" href="#">File List</a>
+</div>
+      <div class="clear"></div>
+    </div>
+    <iframe id="search_frame"></iframe>
+    <div id="content"><h1>Module: Lims::Core::Resource
+</h1>
+<dl class="box">
+    <dt class="r1">Included in:</dt>
+    <dd class="r1"><span class='object_link'><a href="Persistence/ComparisonFilter.html" title="Lims::Core::Persistence::ComparisonFilter (class)">Persistence::ComparisonFilter</a></span>, <span class='object_link'><a href="Persistence/MultiCriteriaFilter.html" title="Lims::Core::Persistence::MultiCriteriaFilter (class)">Persistence::MultiCriteriaFilter</a></span>, <span class='object_link'><a href="Persistence/Search.html" title="Lims::Core::Persistence::Search (class)">Persistence::Search</a></span>, <span class='object_link'><a href="Persistence/Sequel/ForTest/Name.html" title="Lims::Core::Persistence::Sequel::ForTest::Name (class)">Persistence::Sequel::ForTest::Name</a></span>, <span class='object_link'><a href="Persistence/UuidResource.html" title="Lims::Core::Persistence::UuidResource (class)">Persistence::UuidResource</a></span>, <span class='object_link'><a href="../../SessionSpec/Model.html" title="SessionSpec::Model (class)">SessionSpec::Model</a></span></dd>
+    <dt class="r2 last">Defined in:</dt>
+    <dd class="r2 last">lib/lims-core/resource.rb</dd>
+</dl>
+<div class="clear"></div>
+    <h2>
+      Class Method Summary
+      <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
+    </h2>
+    <ul class="summary">
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#included-class_method" title="included (class method)">+ (Object) <strong>included</strong>(klass) </a>
+  </span>
+    <span class="summary_desc"><div class='inline'></div></span>
+</li>
+    </ul>
+  <div id="class_method_details" class="method_details_list">
+    <h2>Class Method Details</h2>
+      <div class="method_details first">
+  <p class="signature first" id="included-class_method">
+    + (<tt><span class='object_link'><a href="../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>included</strong>(klass)
+</p><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+7
+8
+9
+10
+11</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/resource.rb', line 7</span>
+<span class='kw'>def</span> <span class='kw'>self</span><span class='period'>.</span><span class='id included'>included</span><span class='lparen'>(</span><span class='id klass'>klass</span><span class='rparen'>)</span>
+  <span class='id klass'>klass</span><span class='period'>.</span><span class='id class_eval'>class_eval</span> <span class='kw'>do</span>
+    <span class='id include'>include</span> <span class='const'>Base</span>
+  <span class='kw'>end</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+  </div>
+</div>
+  </body>
+</html>