RubyGems - lims-core - Versions diffs - 3.2.3 - Mend

lims-core 3.2.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (177) hide show

checksums.yaml +15 -0
data/.gitignore +5 -0
data/.rspec +1 -0
data/.rvmrc +2 -0
data/.travis.yml +2 -0
data/.vimrc +27 -0
data/.yard_templates/default/layout/html/footer.erb +0 -0
data/.yardopts +1 -0
data/Gemfile +54 -0
data/Gemfile.lock +197 -0
data/Guardfile +21 -0
data/Guardfile.tmux +28 -0
data/README.markdown +67 -0
data/Rakefile +16 -0
data/config/database.yml +16 -0
data/doc/Array.html +116 -0
data/doc/Array/ArrayLoggerPersistor.html +152 -0
data/doc/Lims.html +114 -0
data/doc/Lims/Core.html +178 -0
data/doc/Lims/Core/Action.html +91 -0
data/doc/Lims/Core/Actions.html +116 -0
data/doc/Lims/Core/Actions/Action.html +216 -0
data/doc/Lims/Core/Actions/Action/AfterEval.html +853 -0
data/doc/Lims/Core/Actions/Action/InvalidParameters.html +268 -0
data/doc/Lims/Core/Actions/ActionGroup.html +196 -0
data/doc/Lims/Core/Actions/ActionGroup/AfterEval.html +315 -0
data/doc/Lims/Core/Actions/BulkAction.html +224 -0
data/doc/Lims/Core/Actions/BulkAction/AfterEval.html +253 -0
data/doc/Lims/Core/Actions/TestActionGroup.html +101 -0
data/doc/Lims/Core/Actions/TestActionGroup/Action.html +133 -0
data/doc/Lims/Core/Actions/TestActionGroup/ActionGroup.html +127 -0
data/doc/Lims/Core/Base.html +287 -0
data/doc/Lims/Core/Base/AccessibleViaSuper.html +252 -0
data/doc/Lims/Core/Base/ClassMethod.html +177 -0
data/doc/Lims/Core/Base/HashString.html +177 -0
data/doc/Lims/Core/Base/IsArrayOf.html +606 -0
data/doc/Lims/Core/Base/State.html +130 -0
data/doc/Lims/Core/Organization.html +113 -0
data/doc/Lims/Core/Organization/Batch.html +106 -0
data/doc/Lims/Core/Persistence.html +267 -0
data/doc/Lims/Core/Persistence/ComparisonFilter.html +318 -0
data/doc/Lims/Core/Persistence/Filter.html +252 -0
data/doc/Lims/Core/Persistence/IdentityMap.html +409 -0
data/doc/Lims/Core/Persistence/IdentityMap/Class.html +144 -0
data/doc/Lims/Core/Persistence/IdentityMap/DuplicateError.html +126 -0
data/doc/Lims/Core/Persistence/IdentityMap/DuplicateIdError.html +136 -0
data/doc/Lims/Core/Persistence/IdentityMap/DuplicateObjectError.html +136 -0
data/doc/Lims/Core/Persistence/IdentityMapClass.html +133 -0
data/doc/Lims/Core/Persistence/Logger.html +105 -0
data/doc/Lims/Core/Persistence/Logger/Persistor.html +334 -0
data/doc/Lims/Core/Persistence/Logger/Session.html +452 -0
data/doc/Lims/Core/Persistence/Logger/Store.html +470 -0
data/doc/Lims/Core/Persistence/MessageBus.html +871 -0
data/doc/Lims/Core/Persistence/MessageBus/ConnectionError.html +123 -0
data/doc/Lims/Core/Persistence/MessageBus/InvalidSettingsError.html +122 -0
data/doc/Lims/Core/Persistence/MultiCriteriaFilter.html +293 -0
data/doc/Lims/Core/Persistence/PersistAssociationTrait.html +91 -0
data/doc/Lims/Core/Persistence/PersistableTrait.html +91 -0
data/doc/Lims/Core/Persistence/Persistor.html +3072 -0
data/doc/Lims/Core/Persistence/Persistor/DuplicateError.html +205 -0
data/doc/Lims/Core/Persistence/Persistor/DuplicateIdError.html +147 -0
data/doc/Lims/Core/Persistence/Persistor/DuplicateObjectError.html +147 -0
data/doc/Lims/Core/Persistence/PersistorTrait.html +91 -0
data/doc/Lims/Core/Persistence/ResourceState.html +1738 -0
data/doc/Lims/Core/Persistence/Search.html +269 -0
data/doc/Lims/Core/Persistence/Search/CreateSearch.html +251 -0
data/doc/Lims/Core/Persistence/Search/SearchPersistor.html +240 -0
data/doc/Lims/Core/Persistence/Search/SearchSequelPersistor.html +396 -0
data/doc/Lims/Core/Persistence/Sequel.html +117 -0
data/doc/Lims/Core/Persistence/Sequel/Filters.html +462 -0
data/doc/Lims/Core/Persistence/Sequel/ForTest.html +101 -0
data/doc/Lims/Core/Persistence/Sequel/ForTest/Name.html +137 -0
data/doc/Lims/Core/Persistence/Sequel/ForTest/Name/NamePersitor.html +143 -0
data/doc/Lims/Core/Persistence/Sequel/Migrations.html +266 -0
data/doc/Lims/Core/Persistence/Sequel/Persistor.html +665 -0
data/doc/Lims/Core/Persistence/Sequel/Session.html +501 -0
data/doc/Lims/Core/Persistence/Sequel/Store.html +417 -0
data/doc/Lims/Core/Persistence/Session.html +2751 -0
data/doc/Lims/Core/Persistence/Session/UnmanagedObjectError.html +111 -0
data/doc/Lims/Core/Persistence/StateGroup.html +696 -0
data/doc/Lims/Core/Persistence/StateList.html +498 -0
data/doc/Lims/Core/Persistence/Store.html +695 -0
data/doc/Lims/Core/Persistence/UuidResource.html +1044 -0
data/doc/Lims/Core/Persistence/UuidResource/InvalidUuidError.html +111 -0
data/doc/Lims/Core/Persistence/UuidResource/UuidResourcePersistor.html +337 -0
data/doc/Lims/Core/Persistence/Uuidable.html +799 -0
data/doc/Lims/Core/Persistor.html +320 -0
data/doc/Lims/Core/Resource.html +165 -0
data/doc/Object.html +228 -0
data/doc/SessionSpec.html +101 -0
data/doc/SessionSpec/Model.html +279 -0
data/doc/SessionSpec/Model/ModelPersistor.html +327 -0
data/doc/_index.html +732 -0
data/doc/class_list.html +47 -0
data/doc/css/common.css +1 -0
data/doc/css/full_list.css +55 -0
data/doc/css/style.css +322 -0
data/doc/file.README.html +127 -0
data/doc/file_list.html +49 -0
data/doc/frames.html +13 -0
data/doc/index.html +127 -0
data/doc/js/app.js +205 -0
data/doc/js/full_list.js +167 -0
data/doc/js/jquery.js +16 -0
data/doc/method_list.html +1894 -0
data/doc/top-level-namespace.html +100 -0
data/lib/common.rb +18 -0
data/lib/lims-core.rb +29 -0
data/lib/lims-core/actions.rb +10 -0
data/lib/lims-core/actions/action.rb +185 -0
data/lib/lims-core/actions/action_group.rb +54 -0
data/lib/lims-core/actions/bulk_action.rb +65 -0
data/lib/lims-core/base.rb +132 -0
data/lib/lims-core/helpers.rb +41 -0
data/lib/lims-core/persistence.rb +15 -0
data/lib/lims-core/persistence/comparison_filter.rb +54 -0
data/lib/lims-core/persistence/filter.rb +23 -0
data/lib/lims-core/persistence/identity_map.rb +55 -0
data/lib/lims-core/persistence/logger/all.rb +5 -0
data/lib/lims-core/persistence/logger/persistor.rb +35 -0
data/lib/lims-core/persistence/logger/session.rb +30 -0
data/lib/lims-core/persistence/logger/store.rb +37 -0
data/lib/lims-core/persistence/message_bus.rb +131 -0
data/lib/lims-core/persistence/multi_criteria_filter.rb +50 -0
data/lib/lims-core/persistence/persist_association_trait.rb +96 -0
data/lib/lims-core/persistence/persistable_trait.rb +150 -0
data/lib/lims-core/persistence/persistor.rb +495 -0
data/lib/lims-core/persistence/resource_state.rb +157 -0
data/lib/lims-core/persistence/search.rb +3 -0
data/lib/lims-core/persistence/search/all.rb +3 -0
data/lib/lims-core/persistence/search/create_search.rb +55 -0
data/lib/lims-core/persistence/search/search_persistor.rb +45 -0
data/lib/lims-core/persistence/search/search_sequel_persistor.rb +40 -0
data/lib/lims-core/persistence/sequel.rb +14 -0
data/lib/lims-core/persistence/sequel/filters.rb +106 -0
data/lib/lims-core/persistence/sequel/migrations.rb +14 -0
data/lib/lims-core/persistence/sequel/migrations/add_audit_tables.rb +147 -0
data/lib/lims-core/persistence/sequel/migrations/initial.rb +156 -0
data/lib/lims-core/persistence/sequel/persistor.rb +200 -0
data/lib/lims-core/persistence/sequel/session.rb +136 -0
data/lib/lims-core/persistence/sequel/store.rb +37 -0
data/lib/lims-core/persistence/session.rb +409 -0
data/lib/lims-core/persistence/state_group.rb +97 -0
data/lib/lims-core/persistence/state_list.rb +56 -0
data/lib/lims-core/persistence/store.rb +73 -0
data/lib/lims-core/persistence/uuid_resource.rb +115 -0
data/lib/lims-core/persistence/uuid_resource_persistor.rb +43 -0
data/lib/lims-core/persistence/uuidable.rb +107 -0
data/lib/lims-core/resource.rb +21 -0
data/lib/lims-core/subclass_tracker.rb +30 -0
data/lib/lims-core/version.rb +5 -0
data/lims-core.gemspec +40 -0
data/makefile +52 -0
data/showoff/core-2012-06-11/core/01_slide.md +237 -0
data/showoff/core-2012-06-11/core/02_slide.md +110 -0
data/showoff/core-2012-06-11/custom.css +44 -0
data/showoff/core-2012-06-11/main/01_slide.md +53 -0
data/showoff/core-2012-06-11/showoff.json +10 -0
data/showoff/core-2012-06-11/tp1.tpl +1 -0
data/spec/actions/action_group_spec.rb +39 -0
data/spec/actions/spec_helper.rb +1 -0
data/spec/persistence/identity_map_spec.rb +55 -0
data/spec/persistence/logger/spec_helper.rb +7 -0
data/spec/persistence/logger/store_spec.rb +48 -0
data/spec/persistence/message_bus_spec.rb +76 -0
data/spec/persistence/sequel/session_spec.rb +125 -0
data/spec/persistence/sequel/spec_helper.rb +39 -0
data/spec/persistence/sequel/store_shared.rb +25 -0
data/spec/persistence/sequel/store_spec.rb +22 -0
data/spec/persistence/session_spec.rb +199 -0
data/spec/persistence/spec_helper.rb +2 -0
data/spec/persistence/uuid_resource_spec.rb +80 -0
data/spec/spec_helper.rb +10 -0
data/spec/subclass_tracker_sperc.rb +62 -0
data/utils/constant_tree.rb +29 -0
data/utils/stack.rb +48 -0
metadata +402 -0

data/doc/Lims/Core/Persistence/StateList.html ADDED Viewed

@@ -0,0 +1,498 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+  <head>
+    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+<title>
+  Class: Lims::Core::Persistence::StateList
+    &mdash; Documentation by YARD 0.7.3
+</title>
+  <link rel="stylesheet" href="../../../css/style.css" type="text/css" media="screen" charset="utf-8" />
+  <link rel="stylesheet" href="../../../css/common.css" type="text/css" media="screen" charset="utf-8" />
+<script type="text/javascript" charset="utf-8">
+  relpath = '../../..';
+  if (relpath != '') relpath += '/';
+</script>
+  <script type="text/javascript" charset="utf-8" src="../../../js/jquery.js"></script>
+  <script type="text/javascript" charset="utf-8" src="../../../js/app.js"></script>
+  </head>
+  <body>
+    <script type="text/javascript" charset="utf-8">
+      if (window.top.frames.main) document.body.className = 'frames';
+    </script>
+    <div id="header">
+      <div id="menu">
+    <a href="../../../_index.html">Index (S)</a> &raquo;
+    <span class='title'><span class='object_link'><a href="../../../Lims.html" title="Lims (module)">Lims</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../../Core.html" title="Lims::Core (module)">Core</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../Persistence.html" title="Lims::Core::Persistence (module)">Persistence</a></span></span>
+     &raquo;
+    <span class="title">StateList</span>
+  <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
+</div>
+      <div id="search">
+    <a id="class_list_link" href="#">Class List</a>
+    <a id="method_list_link" href="#">Method List</a>
+    <a id="file_list_link" href="#">File List</a>
+</div>
+      <div class="clear"></div>
+    </div>
+    <iframe id="search_frame"></iframe>
+    <div id="content"><h1>Class: Lims::Core::Persistence::StateList
+</h1>
+<dl class="box">
+    <dt class="r1">Inherits:</dt>
+    <dd class="r1">
+      <span class="inheritName">Set</span>
+        <ul class="fullTree">
+          <li><span class='object_link'><a href="../../../Object.html" title="Object (class)">Object</a></span></li>
+            <li class="next">Set</li>
+            <li class="next">Lims::Core::Persistence::StateList</li>
+        </ul>
+        <a href="#" class="inheritanceTree">show all</a>
+      </dd>
+    <dt class="r2 last">Defined in:</dt>
+    <dd class="r2 last">lib/lims-core/persistence/state_list.rb</dd>
+</dl>
+<div class="clear"></div>
+<h2>Overview</h2><div class="docstring">
+  <div class="discussion">
+<p>A immutable list of <span class='object_link'><a href="ResourceState.html" title="Lims::Core::Persistence::ResourceState (class)">ResourceState</a></span>.</p>
+  </div>
+</div>
+<div class="tags">
+</div><div id="subclasses">
+  <h2>Direct Known Subclasses</h2>
+  <p class="children"><span class='object_link'><a href="StateGroup.html" title="Lims::Core::Persistence::StateGroup (class)">StateGroup</a></span></p>
+</div>
+    <h2>
+      Instance Method Summary
+      <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
+    </h2>
+    <ul class="summary">
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#destroy-instance_method" title="#destroy (instance method)">- (Object) <strong>destroy</strong> </a>
+  </span>
+    <span class="summary_desc"><div class='inline'></div></span>
+</li>
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#groups-instance_method" title="#groups (instance method)">- (List&lt;StateGroup&gt;) <strong>groups</strong> </a>
+  </span>
+    <span class="summary_desc"><div class='inline'></div></span>
+</li>
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#load-instance_method" title="#load (instance method)">- (Object) <strong>load</strong> </a>
+  </span>
+    <span class="summary_desc"><div class='inline'></div></span>
+</li>
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#new-instance_method" title="#new (instance method)">- (Object) <strong>new</strong>(&amp;block) </a>
+  </span>
+    <span class="summary_desc"><div class='inline'></div></span>
+</li>
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#reset_status-instance_method" title="#reset_status (instance method)">- (Object) <strong>reset_status</strong> </a>
+  </span>
+    <span class="summary_desc"><div class='inline'></div></span>
+</li>
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#save-instance_method" title="#save (instance method)">- (Object) <strong>save</strong> </a>
+  </span>
+    <span class="summary_desc"><div class='inline'></div></span>
+</li>
+    </ul>
+  <div id="instance_method_details" class="method_details_list">
+    <h2>Instance Method Details</h2>
+      <div class="method_details first">
+  <p class="signature first" id="destroy-instance_method">
+    - (<tt><span class='object_link'><a href="../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>destroy</strong>
+</p><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+35
+36
+37
+38
+39</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/state_list.rb', line 35</span>
+<span class='kw'>def</span> <span class='id destroy'>destroy</span>
+  <span class='id groups'>groups</span><span class='period'>.</span><span class='id each'>each</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id group'>group</span><span class='op'>|</span>
+    <span class='id group'>group</span><span class='period'>.</span><span class='id destroy'>destroy</span>
+  <span class='kw'>end</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+      <div class="method_details ">
+  <p class="signature " id="groups-instance_method">
+    - (<tt>List&lt;<span class='object_link'><a href="StateGroup.html" title="Lims::Core::Persistence::StateGroup (class)">StateGroup</a></span>&gt;</tt>) <strong>groups</strong>
+</p><div class="docstring">
+  <div class="discussion">
+  </div>
+</div>
+<div class="tags">
+<h3>Returns:</h3>
+<ul class="return">
+    <li>
+        <span class='type'>(<tt>List&lt;<span class='object_link'><a href="StateGroup.html" title="Lims::Core::Persistence::StateGroup (class)">StateGroup</a></span>&gt;</tt>)</span>
+    </li>
+</ul>
+</div><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+9
+10
+11
+12
+13
+14
+15</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/state_list.rb', line 9</span>
+<span class='kw'>def</span> <span class='id groups'>groups</span>
+  <span class='id persistor_order'>persistor_order</span> <span class='op'>=</span> <span class='id map'>map</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id state'>state</span><span class='op'>|</span> <span class='id state'>state</span><span class='period'>.</span><span class='id persistor'>persistor</span><span class='rbrace'>}</span><span class='period'>.</span><span class='id uniq'>uniq</span>
+  <span class='id grouped'>grouped</span> <span class='op'>=</span> <span class='id group_by'>group_by</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id state'>state</span><span class='op'>|</span> <span class='id state'>state</span><span class='period'>.</span><span class='id persistor'>persistor</span> <span class='rbrace'>}</span>
+  <span class='id persistor_order'>persistor_order</span><span class='period'>.</span><span class='id map'>map</span> <span class='kw'>do</span>  <span class='op'>|</span><span class='id persistor'>persistor</span><span class='op'>|</span>
+      <span class='const'>StateGroup</span><span class='period'>.</span><span class='id new'>new</span><span class='lparen'>(</span><span class='id persistor'>persistor</span><span class='comma'>,</span> <span class='id grouped'>grouped</span><span class='lbracket'>[</span><span class='id persistor'>persistor</span><span class='rbracket'>]</span><span class='rparen'>)</span>
+    <span class='kw'>end</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+      <div class="method_details ">
+  <p class="signature " id="load-instance_method">
+    - (<tt><span class='object_link'><a href="../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>load</strong>
+</p><div class="docstring">
+  <div class="discussion">
+  <div class="note todo">
+    <strong>TODO:</strong>
+    <div class='inline'>
+<p>return object according to initial order ?</p>
+</div>
+  </div>
+  </div>
+</div>
+<div class="tags">
+</div><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+42
+43
+44
+45
+46</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/state_list.rb', line 42</span>
+<span class='kw'>def</span> <span class='id load'>load</span>
+  <span class='id groups'>groups</span><span class='period'>.</span><span class='id each'>each</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id group'>group</span><span class='op'>|</span>
+    <span class='id group'>group</span><span class='period'>.</span><span class='id load'>load</span>
+  <span class='kw'>end</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+      <div class="method_details ">
+  <p class="signature " id="new-instance_method">
+    - (<tt><span class='object_link'><a href="../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>new</strong>(&amp;block)
+</p><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+25
+26
+27</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/state_list.rb', line 25</span>
+<span class='kw'>def</span> <span class='id new'>new</span><span class='lparen'>(</span><span class='op'>&amp;</span><span class='id block'>block</span><span class='rparen'>)</span>
+  <span class='kw'>self</span><span class='period'>.</span><span class='id class'>class</span><span class='period'>.</span><span class='id new'>new</span><span class='lparen'>(</span><span class='id block'>block</span><span class='period'>.</span><span class='id call'>call</span><span class='rparen'>)</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+      <div class="method_details ">
+  <p class="signature " id="reset_status-instance_method">
+    - (<tt><span class='object_link'><a href="../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>reset_status</strong>
+</p><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+48
+49
+50
+51</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/state_list.rb', line 48</span>
+<span class='kw'>def</span> <span class='id reset_status'>reset_status</span>
+  <span class='id each'>each</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id state'>state</span><span class='op'>|</span>
+    <span class='id state'>state</span><span class='period'>.</span><span class='id reset'>reset</span> <span class='rbrace'>}</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+      <div class="method_details ">
+  <p class="signature " id="save-instance_method">
+    - (<tt><span class='object_link'><a href="../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>save</strong>
+</p><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+29
+30
+31
+32
+33</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/state_list.rb', line 29</span>
+<span class='kw'>def</span> <span class='id save'>save</span>
+  <span class='id groups'>groups</span><span class='period'>.</span><span class='id each'>each</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id group'>group</span><span class='op'>|</span>
+    <span class='id group'>group</span><span class='period'>.</span><span class='id save'>save</span>
+  <span class='kw'>end</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+  </div>
+</div>
+  </body>
+</html>