lims-core 3.2.3
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- checksums.yaml +15 -0
- data/.gitignore +5 -0
- data/.rspec +1 -0
- data/.rvmrc +2 -0
- data/.travis.yml +2 -0
- data/.vimrc +27 -0
- data/.yard_templates/default/layout/html/footer.erb +0 -0
- data/.yardopts +1 -0
- data/Gemfile +54 -0
- data/Gemfile.lock +197 -0
- data/Guardfile +21 -0
- data/Guardfile.tmux +28 -0
- data/README.markdown +67 -0
- data/Rakefile +16 -0
- data/config/database.yml +16 -0
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- data/doc/Lims/Core/Actions/BulkAction.html +224 -0
- data/doc/Lims/Core/Actions/BulkAction/AfterEval.html +253 -0
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- data/doc/Lims/Core/Persistence/Logger/Persistor.html +334 -0
- data/doc/Lims/Core/Persistence/Logger/Session.html +452 -0
- data/doc/Lims/Core/Persistence/Logger/Store.html +470 -0
- data/doc/Lims/Core/Persistence/MessageBus.html +871 -0
- data/doc/Lims/Core/Persistence/MessageBus/ConnectionError.html +123 -0
- data/doc/Lims/Core/Persistence/MessageBus/InvalidSettingsError.html +122 -0
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- data/doc/Lims/Core/Persistence/PersistableTrait.html +91 -0
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- data/doc/Lims/Core/Persistence/Search.html +269 -0
- data/doc/Lims/Core/Persistence/Search/CreateSearch.html +251 -0
- data/doc/Lims/Core/Persistence/Search/SearchPersistor.html +240 -0
- data/doc/Lims/Core/Persistence/Search/SearchSequelPersistor.html +396 -0
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- data/doc/Lims/Core/Persistence/Sequel/Filters.html +462 -0
- data/doc/Lims/Core/Persistence/Sequel/ForTest.html +101 -0
- data/doc/Lims/Core/Persistence/Sequel/ForTest/Name.html +137 -0
- data/doc/Lims/Core/Persistence/Sequel/ForTest/Name/NamePersitor.html +143 -0
- data/doc/Lims/Core/Persistence/Sequel/Migrations.html +266 -0
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- data/doc/Lims/Core/Persistence/UuidResource/InvalidUuidError.html +111 -0
- data/doc/Lims/Core/Persistence/UuidResource/UuidResourcePersistor.html +337 -0
- data/doc/Lims/Core/Persistence/Uuidable.html +799 -0
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- data/doc/Lims/Core/Resource.html +165 -0
- data/doc/Object.html +228 -0
- data/doc/SessionSpec.html +101 -0
- data/doc/SessionSpec/Model.html +279 -0
- data/doc/SessionSpec/Model/ModelPersistor.html +327 -0
- data/doc/_index.html +732 -0
- data/doc/class_list.html +47 -0
- data/doc/css/common.css +1 -0
- data/doc/css/full_list.css +55 -0
- data/doc/css/style.css +322 -0
- data/doc/file.README.html +127 -0
- data/doc/file_list.html +49 -0
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- data/doc/js/jquery.js +16 -0
- data/doc/method_list.html +1894 -0
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- data/lib/common.rb +18 -0
- data/lib/lims-core.rb +29 -0
- data/lib/lims-core/actions.rb +10 -0
- data/lib/lims-core/actions/action.rb +185 -0
- data/lib/lims-core/actions/action_group.rb +54 -0
- data/lib/lims-core/actions/bulk_action.rb +65 -0
- data/lib/lims-core/base.rb +132 -0
- data/lib/lims-core/helpers.rb +41 -0
- data/lib/lims-core/persistence.rb +15 -0
- data/lib/lims-core/persistence/comparison_filter.rb +54 -0
- data/lib/lims-core/persistence/filter.rb +23 -0
- data/lib/lims-core/persistence/identity_map.rb +55 -0
- data/lib/lims-core/persistence/logger/all.rb +5 -0
- data/lib/lims-core/persistence/logger/persistor.rb +35 -0
- data/lib/lims-core/persistence/logger/session.rb +30 -0
- data/lib/lims-core/persistence/logger/store.rb +37 -0
- data/lib/lims-core/persistence/message_bus.rb +131 -0
- data/lib/lims-core/persistence/multi_criteria_filter.rb +50 -0
- data/lib/lims-core/persistence/persist_association_trait.rb +96 -0
- data/lib/lims-core/persistence/persistable_trait.rb +150 -0
- data/lib/lims-core/persistence/persistor.rb +495 -0
- data/lib/lims-core/persistence/resource_state.rb +157 -0
- data/lib/lims-core/persistence/search.rb +3 -0
- data/lib/lims-core/persistence/search/all.rb +3 -0
- data/lib/lims-core/persistence/search/create_search.rb +55 -0
- data/lib/lims-core/persistence/search/search_persistor.rb +45 -0
- data/lib/lims-core/persistence/search/search_sequel_persistor.rb +40 -0
- data/lib/lims-core/persistence/sequel.rb +14 -0
- data/lib/lims-core/persistence/sequel/filters.rb +106 -0
- data/lib/lims-core/persistence/sequel/migrations.rb +14 -0
- data/lib/lims-core/persistence/sequel/migrations/add_audit_tables.rb +147 -0
- data/lib/lims-core/persistence/sequel/migrations/initial.rb +156 -0
- data/lib/lims-core/persistence/sequel/persistor.rb +200 -0
- data/lib/lims-core/persistence/sequel/session.rb +136 -0
- data/lib/lims-core/persistence/sequel/store.rb +37 -0
- data/lib/lims-core/persistence/session.rb +409 -0
- data/lib/lims-core/persistence/state_group.rb +97 -0
- data/lib/lims-core/persistence/state_list.rb +56 -0
- data/lib/lims-core/persistence/store.rb +73 -0
- data/lib/lims-core/persistence/uuid_resource.rb +115 -0
- data/lib/lims-core/persistence/uuid_resource_persistor.rb +43 -0
- data/lib/lims-core/persistence/uuidable.rb +107 -0
- data/lib/lims-core/resource.rb +21 -0
- data/lib/lims-core/subclass_tracker.rb +30 -0
- data/lib/lims-core/version.rb +5 -0
- data/lims-core.gemspec +40 -0
- data/makefile +52 -0
- data/showoff/core-2012-06-11/core/01_slide.md +237 -0
- data/showoff/core-2012-06-11/core/02_slide.md +110 -0
- data/showoff/core-2012-06-11/custom.css +44 -0
- data/showoff/core-2012-06-11/main/01_slide.md +53 -0
- data/showoff/core-2012-06-11/showoff.json +10 -0
- data/showoff/core-2012-06-11/tp1.tpl +1 -0
- data/spec/actions/action_group_spec.rb +39 -0
- data/spec/actions/spec_helper.rb +1 -0
- data/spec/persistence/identity_map_spec.rb +55 -0
- data/spec/persistence/logger/spec_helper.rb +7 -0
- data/spec/persistence/logger/store_spec.rb +48 -0
- data/spec/persistence/message_bus_spec.rb +76 -0
- data/spec/persistence/sequel/session_spec.rb +125 -0
- data/spec/persistence/sequel/spec_helper.rb +39 -0
- data/spec/persistence/sequel/store_shared.rb +25 -0
- data/spec/persistence/sequel/store_spec.rb +22 -0
- data/spec/persistence/session_spec.rb +199 -0
- data/spec/persistence/spec_helper.rb +2 -0
- data/spec/persistence/uuid_resource_spec.rb +80 -0
- data/spec/spec_helper.rb +10 -0
- data/spec/subclass_tracker_sperc.rb +62 -0
- data/utils/constant_tree.rb +29 -0
- data/utils/stack.rb +48 -0
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- (<tt><span class='object_link'><a href="" title="Lims::Core::Persistence::StateGroup (class)">StateGroup</a></span></tt>) <strong>initialize</strong>(persistor, states)
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<pre class="code"><span class="info file"># File 'lib/lims-core/persistence/state_group.rb', line 8</span>
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<span class='kw'>def</span> <span class='id initialize'>initialize</span><span class='lparen'>(</span><span class='id persistor'>persistor</span><span class='comma'>,</span> <span class='id states'>states</span><span class='rparen'>)</span>
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<span class='ivar'>@persistor</span> <span class='op'>=</span> <span class='id persistor'>persistor</span>
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<span class='kw'>end</span></pre>
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- (<tt><span class='object_link'><a href="../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>persistor</strong> <span class="extras">(readonly)</span>
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<pre class="code"><span class="info file"># File 'lib/lims-core/persistence/state_group.rb', line 7</span>
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<span class='kw'>def</span> <span class='id persistor'>persistor</span>
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<span class='kw'>end</span></pre>
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<span class='kw'>def</span> <span class='id destroy'>destroy</span>
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</span> <span class='id each_with_object'>each_with_object</span><span class='lparen'>(</span><span class='const'>StateList</span><span class='period'>.</span><span class='id new'>new</span><span class='rparen'>)</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id state'>state</span><span class='comma'>,</span> <span class='id list'>list</span><span class='op'>|</span>
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<span class='id state'>state</span><span class='period'>.</span><span class='id mark_for_deletion'>mark_for_deletion</span>
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<span class='id list'>list</span><span class='period'>.</span><span class='id merge'>merge</span><span class='lparen'>(</span><span class='id persistor'>persistor</span><span class='period'>.</span><span class='id deletable_children_for'>deletable_children_for</span><span class='lparen'>(</span><span class='id state'>state</span><span class='period'>.</span><span class='id resource'>resource</span><span class='rparen'>)</span><span class='rparen'>)</span>
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<span class='id state'>state</span><span class='period'>.</span><span class='id children_saved!'>children_saved!</span>
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<span class='id persistor'>persistor</span><span class='period'>.</span><span class='id bulk_delete'>bulk_delete</span><span class='lparen'>(</span><span class='kw'>self</span><span class='period'>.</span><span class='id select'>select</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id s'>s</span><span class='op'>|</span> <span class='op'>!</span><span class='id s'>s</span><span class='period'>.</span><span class='id body_saved?'>body_saved?</span> <span class='rbrace'>}</span><span class='rparen'>)</span>
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<span class='id each_with_object'>each_with_object</span><span class='lparen'>(</span><span class='const'>StateList</span><span class='period'>.</span><span class='id new'>new</span><span class='rparen'>)</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id state'>state</span><span class='comma'>,</span> <span class='id list'>list</span><span class='op'>|</span>
|
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<span class='id list'>list</span><span class='period'>.</span><span class='id merge'>merge</span><span class='lparen'>(</span><span class='id persistor'>persistor</span><span class='period'>.</span><span class='id deletable_parents_for'>deletable_parents_for</span><span class='lparen'>(</span><span class='id state'>state</span><span class='period'>.</span><span class='id resource'>resource</span><span class='rparen'>)</span><span class='rparen'>)</span>
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<span class='id state'>state</span><span class='period'>.</span><span class='id parents_saved!'>parents_saved!</span>
|
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|
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<span class='id each'>each</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id state'>state</span><span class='op'>|</span> <span class='id state'>state</span><span class='period'>.</span><span class='id body_saved!'>body_saved!</span> <span class='rbrace'>}</span>
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<pre class="code"><span class="info file"># File 'lib/lims-core/persistence/state_group.rb', line 12</span>
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<span class='kw'>def</span> <span class='id groups'>groups</span>
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<pre class="code"><span class="info file"># File 'lib/lims-core/persistence/state_group.rb', line 80</span>
|
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|
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<span class='kw'>def</span> <span class='id load'>load</span><span class='lparen'>(</span><span class='op'>*</span><span class='id params'>params</span><span class='rparen'>)</span>
|
|
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|
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<span class='id to_load'>to_load</span> <span class='op'>=</span> <span class='id select'>select</span><span class='lparen'>(</span><span class='op'>&</span><span class='symbol'>:to_load?</span><span class='rparen'>)</span>
|
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|
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<span class='id all_parents'>all_parents</span> <span class='op'>=</span> <span class='const'>StateList</span><span class='period'>.</span><span class='id new'>new</span>
|
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|
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<span class='id attributes_list'>attributes_list</span> <span class='op'>=</span> <span class='lbracket'>[</span><span class='rbracket'>]</span>
|
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|
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<span class='id persistor'>persistor</span><span class='period'>.</span><span class='id bulk_load'>bulk_load</span><span class='lparen'>(</span><span class='id to_load'>to_load</span><span class='comma'>,</span> <span class='op'>*</span><span class='id params'>params</span><span class='rparen'>)</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id att'>att</span><span class='op'>|</span>
|
|
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|
+
<span class='id all_parents'>all_parents</span><span class='period'>.</span><span class='id merge'>merge</span><span class='lparen'>(</span><span class='id persistor'>persistor</span><span class='period'>.</span><span class='id parents_for_attributes'>parents_for_attributes</span><span class='lparen'>(</span><span class='id att'>att</span><span class='rparen'>)</span><span class='rparen'>)</span>
|
|
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|
+
<span class='id attributes_list'>attributes_list</span> <span class='op'><<</span> <span class='id att'>att</span>
|
|
565
|
+
<span class='kw'>end</span>
|
|
566
|
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<span class='id all_parents'>all_parents</span><span class='period'>.</span><span class='id load'>load</span><span class='lparen'>(</span><span class='op'>*</span><span class='id params'>params</span><span class='rparen'>)</span>
|
|
567
|
+
<span class='id attributes_list'>attributes_list</span><span class='period'>.</span><span class='id map'>map</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id att'>att</span><span class='op'>|</span>
|
|
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|
+
<span class='id persistor'>persistor</span><span class='period'>.</span><span class='id new_from_attributes'>new_from_attributes</span><span class='lparen'>(</span><span class='id att'>att</span><span class='rparen'>)</span>
|
|
569
|
+
<span class='kw'>end</span>
|
|
570
|
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<span class='id persistor'>persistor</span><span class='period'>.</span><span class='id load_children'>load_children</span><span class='lparen'>(</span><span class='kw'>self</span><span class='comma'>,</span> <span class='op'>*</span><span class='id params'>params</span><span class='rparen'>)</span>
|
|
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|
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<span class='kw'>self</span>
|
|
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|
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<span class='kw'>end</span></pre>
|
|
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|
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|
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|
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|
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<div class="method_details ">
|
|
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|
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|
|
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|
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|
|
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|
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|
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|
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<pre class="code"><span class="info file"># File 'lib/lims-core/persistence/state_group.rb', line 16</span>
|
|
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|
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|
|
598
|
+
<span class='kw'>def</span> <span class='id new'>new</span><span class='lparen'>(</span><span class='op'>&</span><span class='id block'>block</span><span class='rparen'>)</span>
|
|
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|
+
<span class='kw'>self</span><span class='period'>.</span><span class='id class'>class</span><span class='period'>.</span><span class='id new'>new</span><span class='lparen'>(</span><span class='kw'>self</span><span class='period'>.</span><span class='id persistor'>persistor</span><span class='comma'>,</span> <span class='id block'>block</span><span class='period'>.</span><span class='id call'>call</span><span class='rparen'>)</span>
|
|
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|
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<span class='kw'>end</span></pre>
|
|
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<div class="method_details ">
|
|
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|
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<p class="signature " id="save-instance_method">
|
|
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|
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|
|
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|
+
- (<tt><span class='object_link'><a href="../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>save</strong>
|
|
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|
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<pre class="code"><span class="info file"># File 'lib/lims-core/persistence/state_group.rb', line 20</span>
|
|
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|
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|
|
654
|
+
<span class='kw'>def</span> <span class='id save'>save</span>
|
|
655
|
+
<span class='comment'># @todo method for that.
|
|
656
|
+
</span> <span class='id all_parents'>all_parents</span> <span class='op'>=</span> <span class='const'>StateList</span><span class='period'>.</span><span class='id new'>new</span>
|
|
657
|
+
<span class='id each'>each</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id state'>state</span><span class='op'>|</span>
|
|
658
|
+
<span class='kw'>next</span> <span class='kw'>if</span> <span class='id state'>state</span><span class='period'>.</span><span class='id resource'>resource</span> <span class='op'>==</span> <span class='kw'>nil</span> <span class='kw'>or</span> <span class='id state'>state</span><span class='period'>.</span><span class='id to_delete'>to_delete</span>
|
|
659
|
+
<span class='id state'>state</span><span class='period'>.</span><span class='id parents!'>parents!</span><span class='period'>.</span><span class='id andtap'>andtap</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id parents'>parents</span><span class='op'>|</span>
|
|
660
|
+
<span class='id all_parents'>all_parents</span><span class='period'>.</span><span class='id merge'>merge</span><span class='lparen'>(</span><span class='id parents'>parents</span><span class='rparen'>)</span>
|
|
661
|
+
<span class='kw'>end</span>
|
|
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|
+
<span class='kw'>end</span>
|
|
663
|
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|
|
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|
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<span class='id all_parents'>all_parents</span><span class='period'>.</span><span class='id save'>save</span>
|
|
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|
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|
|
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<span class='id persistor'>persistor</span><span class='period'>.</span><span class='id purge_invalid_object'>purge_invalid_object</span>
|
|
667
|
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|
|
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|
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<span class='comment'># split by status
|
|
669
|
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</span> <span class='id group_by'>group_by</span><span class='lparen'>(</span><span class='op'>&</span><span class='symbol'>:save_action</span><span class='rparen'>)</span><span class='period'>.</span><span class='id tap'>tap</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id groups'>groups</span><span class='op'>|</span>
|
|
670
|
+
<span class='id groups'>groups</span><span class='lbracket'>[</span><span class='symbol'>:delete</span><span class='rbracket'>]</span><span class='period'>.</span><span class='id andtap'>andtap</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id group'>group</span><span class='op'>|</span> <span class='const'>StateGroup</span><span class='period'>.</span><span class='id new'>new</span><span class='lparen'>(</span><span class='id persistor'>persistor</span><span class='comma'>,</span> <span class='id group'>group</span><span class='rparen'>)</span><span class='period'>.</span><span class='id destroy'>destroy</span> <span class='rbrace'>}</span>
|
|
671
|
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<span class='id groups'>groups</span><span class='lbracket'>[</span><span class='symbol'>:update</span><span class='rbracket'>]</span><span class='period'>.</span><span class='id andtap'>andtap</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id group'>group</span><span class='op'>|</span> <span class='id persistor'>persistor</span><span class='period'>.</span><span class='id bulk_update'>bulk_update</span><span class='lparen'>(</span><span class='id group'>group</span><span class='rparen'>)</span> <span class='rbrace'>}</span>
|
|
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|
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<span class='id groups'>groups</span><span class='lbracket'>[</span><span class='symbol'>:insert</span><span class='rbracket'>]</span><span class='period'>.</span><span class='id andtap'>andtap</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id group'>group</span><span class='op'>|</span> <span class='id persistor'>persistor</span><span class='period'>.</span><span class='id bulk_insert'>bulk_insert</span><span class='lparen'>(</span><span class='id group'>group</span><span class='rparen'>)</span> <span class='rbrace'>}</span>
|
|
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|
+
<span class='kw'>end</span>
|
|
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|
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|
|
675
|
+
<span class='id all_children'>all_children</span> <span class='op'>=</span> <span class='const'>StateList</span><span class='period'>.</span><span class='id new'>new</span>
|
|
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|
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<span class='id each'>each</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id state'>state</span><span class='op'>|</span>
|
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|
+
<span class='kw'>next</span> <span class='kw'>unless</span> <span class='id state'>state</span><span class='period'>.</span><span class='id resource'>resource</span>
|
|
678
|
+
<span class='id state'>state</span><span class='period'>.</span><span class='id body_saved!'>body_saved!</span>
|
|
679
|
+
<span class='id state'>state</span><span class='period'>.</span><span class='id children!'>children!</span><span class='period'>.</span><span class='id andtap'>andtap</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id children'>children</span><span class='op'>|</span>
|
|
680
|
+
<span class='id all_children'>all_children</span><span class='period'>.</span><span class='id merge'>merge</span><span class='lparen'>(</span><span class='id children'>children</span><span class='rparen'>)</span>
|
|
681
|
+
<span class='kw'>end</span>
|
|
682
|
+
<span class='kw'>end</span>
|
|
683
|
+
<span class='id all_children'>all_children</span><span class='period'>.</span><span class='id save'>save</span>
|
|
684
|
+
<span class='kw'>end</span></pre>
|
|
685
|
+
</td>
|
|
686
|
+
</tr>
|
|
687
|
+
</table>
|
|
688
|
+
</div>
|
|
689
|
+
|
|
690
|
+
</div>
|
|
691
|
+
|
|
692
|
+
</div>
|
|
693
|
+
|
|
694
|
+
|
|
695
|
+
</body>
|
|
696
|
+
</html>
|