RubyGems - lims-core - Versions diffs - 3.2.3 - Mend

lims-core 3.2.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (177) hide show

checksums.yaml +15 -0
data/.gitignore +5 -0
data/.rspec +1 -0
data/.rvmrc +2 -0
data/.travis.yml +2 -0
data/.vimrc +27 -0
data/.yard_templates/default/layout/html/footer.erb +0 -0
data/.yardopts +1 -0
data/Gemfile +54 -0
data/Gemfile.lock +197 -0
data/Guardfile +21 -0
data/Guardfile.tmux +28 -0
data/README.markdown +67 -0
data/Rakefile +16 -0
data/config/database.yml +16 -0
data/doc/Array.html +116 -0
data/doc/Array/ArrayLoggerPersistor.html +152 -0
data/doc/Lims.html +114 -0
data/doc/Lims/Core.html +178 -0
data/doc/Lims/Core/Action.html +91 -0
data/doc/Lims/Core/Actions.html +116 -0
data/doc/Lims/Core/Actions/Action.html +216 -0
data/doc/Lims/Core/Actions/Action/AfterEval.html +853 -0
data/doc/Lims/Core/Actions/Action/InvalidParameters.html +268 -0
data/doc/Lims/Core/Actions/ActionGroup.html +196 -0
data/doc/Lims/Core/Actions/ActionGroup/AfterEval.html +315 -0
data/doc/Lims/Core/Actions/BulkAction.html +224 -0
data/doc/Lims/Core/Actions/BulkAction/AfterEval.html +253 -0
data/doc/Lims/Core/Actions/TestActionGroup.html +101 -0
data/doc/Lims/Core/Actions/TestActionGroup/Action.html +133 -0
data/doc/Lims/Core/Actions/TestActionGroup/ActionGroup.html +127 -0
data/doc/Lims/Core/Base.html +287 -0
data/doc/Lims/Core/Base/AccessibleViaSuper.html +252 -0
data/doc/Lims/Core/Base/ClassMethod.html +177 -0
data/doc/Lims/Core/Base/HashString.html +177 -0
data/doc/Lims/Core/Base/IsArrayOf.html +606 -0
data/doc/Lims/Core/Base/State.html +130 -0
data/doc/Lims/Core/Organization.html +113 -0
data/doc/Lims/Core/Organization/Batch.html +106 -0
data/doc/Lims/Core/Persistence.html +267 -0
data/doc/Lims/Core/Persistence/ComparisonFilter.html +318 -0
data/doc/Lims/Core/Persistence/Filter.html +252 -0
data/doc/Lims/Core/Persistence/IdentityMap.html +409 -0
data/doc/Lims/Core/Persistence/IdentityMap/Class.html +144 -0
data/doc/Lims/Core/Persistence/IdentityMap/DuplicateError.html +126 -0
data/doc/Lims/Core/Persistence/IdentityMap/DuplicateIdError.html +136 -0
data/doc/Lims/Core/Persistence/IdentityMap/DuplicateObjectError.html +136 -0
data/doc/Lims/Core/Persistence/IdentityMapClass.html +133 -0
data/doc/Lims/Core/Persistence/Logger.html +105 -0
data/doc/Lims/Core/Persistence/Logger/Persistor.html +334 -0
data/doc/Lims/Core/Persistence/Logger/Session.html +452 -0
data/doc/Lims/Core/Persistence/Logger/Store.html +470 -0
data/doc/Lims/Core/Persistence/MessageBus.html +871 -0
data/doc/Lims/Core/Persistence/MessageBus/ConnectionError.html +123 -0
data/doc/Lims/Core/Persistence/MessageBus/InvalidSettingsError.html +122 -0
data/doc/Lims/Core/Persistence/MultiCriteriaFilter.html +293 -0
data/doc/Lims/Core/Persistence/PersistAssociationTrait.html +91 -0
data/doc/Lims/Core/Persistence/PersistableTrait.html +91 -0
data/doc/Lims/Core/Persistence/Persistor.html +3072 -0
data/doc/Lims/Core/Persistence/Persistor/DuplicateError.html +205 -0
data/doc/Lims/Core/Persistence/Persistor/DuplicateIdError.html +147 -0
data/doc/Lims/Core/Persistence/Persistor/DuplicateObjectError.html +147 -0
data/doc/Lims/Core/Persistence/PersistorTrait.html +91 -0
data/doc/Lims/Core/Persistence/ResourceState.html +1738 -0
data/doc/Lims/Core/Persistence/Search.html +269 -0
data/doc/Lims/Core/Persistence/Search/CreateSearch.html +251 -0
data/doc/Lims/Core/Persistence/Search/SearchPersistor.html +240 -0
data/doc/Lims/Core/Persistence/Search/SearchSequelPersistor.html +396 -0
data/doc/Lims/Core/Persistence/Sequel.html +117 -0
data/doc/Lims/Core/Persistence/Sequel/Filters.html +462 -0
data/doc/Lims/Core/Persistence/Sequel/ForTest.html +101 -0
data/doc/Lims/Core/Persistence/Sequel/ForTest/Name.html +137 -0
data/doc/Lims/Core/Persistence/Sequel/ForTest/Name/NamePersitor.html +143 -0
data/doc/Lims/Core/Persistence/Sequel/Migrations.html +266 -0
data/doc/Lims/Core/Persistence/Sequel/Persistor.html +665 -0
data/doc/Lims/Core/Persistence/Sequel/Session.html +501 -0
data/doc/Lims/Core/Persistence/Sequel/Store.html +417 -0
data/doc/Lims/Core/Persistence/Session.html +2751 -0
data/doc/Lims/Core/Persistence/Session/UnmanagedObjectError.html +111 -0
data/doc/Lims/Core/Persistence/StateGroup.html +696 -0
data/doc/Lims/Core/Persistence/StateList.html +498 -0
data/doc/Lims/Core/Persistence/Store.html +695 -0
data/doc/Lims/Core/Persistence/UuidResource.html +1044 -0
data/doc/Lims/Core/Persistence/UuidResource/InvalidUuidError.html +111 -0
data/doc/Lims/Core/Persistence/UuidResource/UuidResourcePersistor.html +337 -0
data/doc/Lims/Core/Persistence/Uuidable.html +799 -0
data/doc/Lims/Core/Persistor.html +320 -0
data/doc/Lims/Core/Resource.html +165 -0
data/doc/Object.html +228 -0
data/doc/SessionSpec.html +101 -0
data/doc/SessionSpec/Model.html +279 -0
data/doc/SessionSpec/Model/ModelPersistor.html +327 -0
data/doc/_index.html +732 -0
data/doc/class_list.html +47 -0
data/doc/css/common.css +1 -0
data/doc/css/full_list.css +55 -0
data/doc/css/style.css +322 -0
data/doc/file.README.html +127 -0
data/doc/file_list.html +49 -0
data/doc/frames.html +13 -0
data/doc/index.html +127 -0
data/doc/js/app.js +205 -0
data/doc/js/full_list.js +167 -0
data/doc/js/jquery.js +16 -0
data/doc/method_list.html +1894 -0
data/doc/top-level-namespace.html +100 -0
data/lib/common.rb +18 -0
data/lib/lims-core.rb +29 -0
data/lib/lims-core/actions.rb +10 -0
data/lib/lims-core/actions/action.rb +185 -0
data/lib/lims-core/actions/action_group.rb +54 -0
data/lib/lims-core/actions/bulk_action.rb +65 -0
data/lib/lims-core/base.rb +132 -0
data/lib/lims-core/helpers.rb +41 -0
data/lib/lims-core/persistence.rb +15 -0
data/lib/lims-core/persistence/comparison_filter.rb +54 -0
data/lib/lims-core/persistence/filter.rb +23 -0
data/lib/lims-core/persistence/identity_map.rb +55 -0
data/lib/lims-core/persistence/logger/all.rb +5 -0
data/lib/lims-core/persistence/logger/persistor.rb +35 -0
data/lib/lims-core/persistence/logger/session.rb +30 -0
data/lib/lims-core/persistence/logger/store.rb +37 -0
data/lib/lims-core/persistence/message_bus.rb +131 -0
data/lib/lims-core/persistence/multi_criteria_filter.rb +50 -0
data/lib/lims-core/persistence/persist_association_trait.rb +96 -0
data/lib/lims-core/persistence/persistable_trait.rb +150 -0
data/lib/lims-core/persistence/persistor.rb +495 -0
data/lib/lims-core/persistence/resource_state.rb +157 -0
data/lib/lims-core/persistence/search.rb +3 -0
data/lib/lims-core/persistence/search/all.rb +3 -0
data/lib/lims-core/persistence/search/create_search.rb +55 -0
data/lib/lims-core/persistence/search/search_persistor.rb +45 -0
data/lib/lims-core/persistence/search/search_sequel_persistor.rb +40 -0
data/lib/lims-core/persistence/sequel.rb +14 -0
data/lib/lims-core/persistence/sequel/filters.rb +106 -0
data/lib/lims-core/persistence/sequel/migrations.rb +14 -0
data/lib/lims-core/persistence/sequel/migrations/add_audit_tables.rb +147 -0
data/lib/lims-core/persistence/sequel/migrations/initial.rb +156 -0
data/lib/lims-core/persistence/sequel/persistor.rb +200 -0
data/lib/lims-core/persistence/sequel/session.rb +136 -0
data/lib/lims-core/persistence/sequel/store.rb +37 -0
data/lib/lims-core/persistence/session.rb +409 -0
data/lib/lims-core/persistence/state_group.rb +97 -0
data/lib/lims-core/persistence/state_list.rb +56 -0
data/lib/lims-core/persistence/store.rb +73 -0
data/lib/lims-core/persistence/uuid_resource.rb +115 -0
data/lib/lims-core/persistence/uuid_resource_persistor.rb +43 -0
data/lib/lims-core/persistence/uuidable.rb +107 -0
data/lib/lims-core/resource.rb +21 -0
data/lib/lims-core/subclass_tracker.rb +30 -0
data/lib/lims-core/version.rb +5 -0
data/lims-core.gemspec +40 -0
data/makefile +52 -0
data/showoff/core-2012-06-11/core/01_slide.md +237 -0
data/showoff/core-2012-06-11/core/02_slide.md +110 -0
data/showoff/core-2012-06-11/custom.css +44 -0
data/showoff/core-2012-06-11/main/01_slide.md +53 -0
data/showoff/core-2012-06-11/showoff.json +10 -0
data/showoff/core-2012-06-11/tp1.tpl +1 -0
data/spec/actions/action_group_spec.rb +39 -0
data/spec/actions/spec_helper.rb +1 -0
data/spec/persistence/identity_map_spec.rb +55 -0
data/spec/persistence/logger/spec_helper.rb +7 -0
data/spec/persistence/logger/store_spec.rb +48 -0
data/spec/persistence/message_bus_spec.rb +76 -0
data/spec/persistence/sequel/session_spec.rb +125 -0
data/spec/persistence/sequel/spec_helper.rb +39 -0
data/spec/persistence/sequel/store_shared.rb +25 -0
data/spec/persistence/sequel/store_spec.rb +22 -0
data/spec/persistence/session_spec.rb +199 -0
data/spec/persistence/spec_helper.rb +2 -0
data/spec/persistence/uuid_resource_spec.rb +80 -0
data/spec/spec_helper.rb +10 -0
data/spec/subclass_tracker_sperc.rb +62 -0
data/utils/constant_tree.rb +29 -0
data/utils/stack.rb +48 -0
metadata +402 -0

data/doc/Lims/Core/Persistence/Logger.html ADDED Viewed

@@ -0,0 +1,105 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+  <head>
+    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+<title>
+  Module: Lims::Core::Persistence::Logger
+    &mdash; Documentation by YARD 0.7.3
+</title>
+  <link rel="stylesheet" href="../../../css/style.css" type="text/css" media="screen" charset="utf-8" />
+  <link rel="stylesheet" href="../../../css/common.css" type="text/css" media="screen" charset="utf-8" />
+<script type="text/javascript" charset="utf-8">
+  relpath = '../../..';
+  if (relpath != '') relpath += '/';
+</script>
+  <script type="text/javascript" charset="utf-8" src="../../../js/jquery.js"></script>
+  <script type="text/javascript" charset="utf-8" src="../../../js/app.js"></script>
+  </head>
+  <body>
+    <script type="text/javascript" charset="utf-8">
+      if (window.top.frames.main) document.body.className = 'frames';
+    </script>
+    <div id="header">
+      <div id="menu">
+    <a href="../../../_index.html">Index (L)</a> &raquo;
+    <span class='title'><span class='object_link'><a href="../../../Lims.html" title="Lims (module)">Lims</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../../Core.html" title="Lims::Core (module)">Core</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../Persistence.html" title="Lims::Core::Persistence (module)">Persistence</a></span></span>
+     &raquo;
+    <span class="title">Logger</span>
+  <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
+</div>
+      <div id="search">
+    <a id="class_list_link" href="#">Class List</a>
+    <a id="method_list_link" href="#">Method List</a>
+    <a id="file_list_link" href="#">File List</a>
+</div>
+      <div class="clear"></div>
+    </div>
+    <iframe id="search_frame"></iframe>
+    <div id="content"><h1>Module: Lims::Core::Persistence::Logger
+</h1>
+<dl class="box">
+    <dt class="r1 last">Defined in:</dt>
+    <dd class="r1 last">lib/lims-core/persistence/logger/store.rb<span class="defines">,<br />
+  lib/lims-core/persistence/logger/session.rb,<br /> lib/lims-core/persistence/logger/persistor.rb</span>
+</dd>
+</dl>
+<div class="clear"></div>
+<h2>Defined Under Namespace</h2>
+<p class="children">
+      <strong class="modules">Modules:</strong> <span class='object_link'><a href="Logger/Persistor.html" title="Lims::Core::Persistence::Logger::Persistor (module)">Persistor</a></span>
+      <strong class="classes">Classes:</strong> <span class='object_link'><a href="Logger/Session.html" title="Lims::Core::Persistence::Logger::Session (class)">Session</a></span>, <span class='object_link'><a href="Logger/Store.html" title="Lims::Core::Persistence::Logger::Store (class)">Store</a></span>
+</p>
+</div>
+  </body>
+</html>

data/doc/Lims/Core/Persistence/Logger/Persistor.html ADDED Viewed

@@ -0,0 +1,334 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+  <head>
+    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+<title>
+  Module: Lims::Core::Persistence::Logger::Persistor
+    &mdash; Documentation by YARD 0.7.3
+</title>
+  <link rel="stylesheet" href="../../../../css/style.css" type="text/css" media="screen" charset="utf-8" />
+  <link rel="stylesheet" href="../../../../css/common.css" type="text/css" media="screen" charset="utf-8" />
+<script type="text/javascript" charset="utf-8">
+  relpath = '../../../..';
+  if (relpath != '') relpath += '/';
+</script>
+  <script type="text/javascript" charset="utf-8" src="../../../../js/jquery.js"></script>
+  <script type="text/javascript" charset="utf-8" src="../../../../js/app.js"></script>
+  </head>
+  <body>
+    <script type="text/javascript" charset="utf-8">
+      if (window.top.frames.main) document.body.className = 'frames';
+    </script>
+    <div id="header">
+      <div id="menu">
+    <a href="../../../../_index.html">Index (P)</a> &raquo;
+    <span class='title'><span class='object_link'><a href="../../../../Lims.html" title="Lims (module)">Lims</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../../../Core.html" title="Lims::Core (module)">Core</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../../Persistence.html" title="Lims::Core::Persistence (module)">Persistence</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../Logger.html" title="Lims::Core::Persistence::Logger (module)">Logger</a></span></span>
+     &raquo;
+    <span class="title">Persistor</span>
+  <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
+</div>
+      <div id="search">
+    <a id="class_list_link" href="#">Class List</a>
+    <a id="method_list_link" href="#">Method List</a>
+    <a id="file_list_link" href="#">File List</a>
+</div>
+      <div class="clear"></div>
+    </div>
+    <iframe id="search_frame"></iframe>
+    <div id="content"><h1>Module: Lims::Core::Persistence::Logger::Persistor
+</h1>
+<dl class="box">
+    <dt class="r1">Included in:</dt>
+    <dd class="r1"><span class='object_link'><a href="../../../../Array/ArrayLoggerPersistor.html" title="Array::ArrayLoggerPersistor (class)">Array::ArrayLoggerPersistor</a></span></dd>
+    <dt class="r2 last">Defined in:</dt>
+    <dd class="r2 last">lib/lims-core/persistence/logger/persistor.rb</dd>
+</dl>
+<div class="clear"></div>
+<h2>Overview</h2><div class="docstring">
+  <div class="discussion">
+<p>Mixin giving extended the persistor classes with the Logger (save)
+behavior.</p>
+  </div>
+</div>
+<div class="tags">
+</div>
+    <h2>
+      Instance Method Summary
+      <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
+    </h2>
+    <ul class="summary">
+        <li class="private ">
+  <span class="summary_signature">
+      <a href="#save_as_aggregation-instance_method" title="#save_as_aggregation (instance method)">- (Object) <strong>save_as_aggregation</strong>(source_id, target, *params) </a>
+  </span>
+  <span class="note title private">private</span>
+    <span class="summary_desc"><div class='inline'></div></span>
+</li>
+        <li class="private ">
+  <span class="summary_signature">
+      <a href="#save_raw-instance_method" title="#save_raw (instance method)">- (Object) <strong>save_raw</strong>(object, *params) </a>
+  </span>
+  <span class="note title private">private</span>
+    <span class="summary_desc"><div class='inline'>
+<p>Load an object to the underlying logger.</p>
+</div></span>
+</li>
+        <li class="private ">
+  <span class="summary_signature">
+      <a href="#save_raw_association-instance_method" title="#save_raw_association (instance method)">- (Object) <strong>save_raw_association</strong>(source_id, target_id, *params) </a>
+  </span>
+  <span class="note title private">private</span>
+    <span class="summary_desc"><div class='inline'></div></span>
+</li>
+    </ul>
+  <div id="instance_method_details" class="method_details_list">
+    <h2>Instance Method Details</h2>
+      <div class="method_details first">
+  <p class="signature first" id="save_as_aggregation-instance_method">
+    - (<tt><span class='object_link'><a href="../../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>save_as_aggregation</strong>(source_id, target, *params)  <span class="extras">(private)</span>
+</p><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+24
+25
+26
+27
+28</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/logger/persistor.rb', line 24</span>
+<span class='kw'>def</span> <span class='id save_as_aggregation'>save_as_aggregation</span><span class='lparen'>(</span><span class='id source_id'>source_id</span><span class='comma'>,</span> <span class='id target'>target</span><span class='comma'>,</span> <span class='op'>*</span><span class='id params'>params</span><span class='rparen'>)</span>
+  <span class='ivar'>@session</span><span class='period'>.</span><span class='id with_indent'>with_indent</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>&quot;</span><span class='embexpr_beg'>#{</span><span class='id params'>params</span><span class='rbrace'>}</span><span class='tstring_content'> - </span><span class='tstring_end'>&quot;</span></span><span class='rparen'>)</span> <span class='kw'>do</span>
+    <span class='kw'>super</span><span class='lparen'>(</span><span class='id source_id'>source_id</span><span class='comma'>,</span> <span class='id target'>target</span><span class='rparen'>)</span>
+  <span class='kw'>end</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+      <div class="method_details ">
+  <p class="signature " id="save_raw-instance_method">
+    - (<tt><span class='object_link'><a href="../../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>save_raw</strong>(object, *params)  <span class="extras">(private)</span>
+</p><div class="docstring">
+  <div class="discussion">
+<p>Load an object to the underlying logger</p>
+  </div>
+</div>
+<div class="tags">
+  <h3>Parameters:</h3>
+<ul class="param">
+    <li>
+        <span class='name'>object</span>
+        <span class='type'>(<tt><span class='object_link'><a href="../../Resource.html" title="Lims::Core::Resource (module)">Resource</a></span></tt>)</span>
+        &mdash;
+        <div class='inline'>
+<p>the object</p>
+</div>
+    </li>
+</ul>
+<h3>Returns:</h3>
+<ul class="return">
+    <li>
+        <span class='type'></span>
+        <div class='inline'>
+<p>the Id if save successful</p>
+</div>
+    </li>
+</ul>
+</div><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+15
+16
+17
+18
+19
+20
+21
+22</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/logger/persistor.rb', line 15</span>
+<span class='kw'>def</span> <span class='id save_raw'>save_raw</span><span class='lparen'>(</span><span class='id object'>object</span><span class='comma'>,</span> <span class='op'>*</span><span class='id params'>params</span><span class='rparen'>)</span>
+  <span class='kw'>case</span> <span class='id object'>object</span>
+    <span class='kw'>when</span> <span class='const'>Resource</span> <span class='kw'>then</span> <span class='ivar'>@session</span><span class='period'>.</span><span class='id log'>log</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>&quot;</span><span class='embexpr_beg'>#{</span><span class='id object'>object</span><span class='period'>.</span><span class='id class'>class</span><span class='period'>.</span><span class='id name'>name</span><span class='rbrace'>}</span><span class='tstring_content'>: </span><span class='embexpr_beg'>#{</span><span class='id filter_attributes_on_save'>filter_attributes_on_save</span><span class='lparen'>(</span><span class='id object'>object</span><span class='period'>.</span><span class='id attributes'>attributes</span><span class='rparen'>)</span><span class='rbrace'>}</span><span class='tstring_end'>&quot;</span></span><span class='rparen'>)</span>
+    <span class='kw'>else</span>
+    <span class='ivar'>@session</span><span class='period'>.</span><span class='id log'>log</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>&quot;</span><span class='embexpr_beg'>#{</span><span class='id object'>object</span><span class='period'>.</span><span class='id inspect'>inspect</span><span class='rbrace'>}</span><span class='tstring_end'>&quot;</span></span><span class='rparen'>)</span>
+    <span class='kw'>end</span>
+  <span class='id object'>object</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+      <div class="method_details ">
+  <p class="signature " id="save_raw_association-instance_method">
+    - (<tt><span class='object_link'><a href="../../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>save_raw_association</strong>(source_id, target_id, *params)  <span class="extras">(private)</span>
+</p><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+30
+31</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/logger/persistor.rb', line 30</span>
+<span class='kw'>def</span> <span class='id save_raw_association'>save_raw_association</span><span class='lparen'>(</span><span class='id source_id'>source_id</span><span class='comma'>,</span> <span class='id target_id'>target_id</span><span class='comma'>,</span> <span class='op'>*</span><span class='id params'>params</span><span class='rparen'>)</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+  </div>
+</div>
+  </body>
+</html>

data/doc/Lims/Core/Persistence/Logger/Session.html ADDED Viewed

@@ -0,0 +1,452 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+  <head>
+    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+<title>
+  Class: Lims::Core::Persistence::Logger::Session
+    &mdash; Documentation by YARD 0.7.3
+</title>
+  <link rel="stylesheet" href="../../../../css/style.css" type="text/css" media="screen" charset="utf-8" />
+  <link rel="stylesheet" href="../../../../css/common.css" type="text/css" media="screen" charset="utf-8" />
+<script type="text/javascript" charset="utf-8">
+  relpath = '../../../..';
+  if (relpath != '') relpath += '/';
+</script>
+  <script type="text/javascript" charset="utf-8" src="../../../../js/jquery.js"></script>
+  <script type="text/javascript" charset="utf-8" src="../../../../js/app.js"></script>
+  </head>
+  <body>
+    <script type="text/javascript" charset="utf-8">
+      if (window.top.frames.main) document.body.className = 'frames';
+    </script>
+    <div id="header">
+      <div id="menu">
+    <a href="../../../../_index.html">Index (S)</a> &raquo;
+    <span class='title'><span class='object_link'><a href="../../../../Lims.html" title="Lims (module)">Lims</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../../../Core.html" title="Lims::Core (module)">Core</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../../Persistence.html" title="Lims::Core::Persistence (module)">Persistence</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../Logger.html" title="Lims::Core::Persistence::Logger (module)">Logger</a></span></span>
+     &raquo;
+    <span class="title">Session</span>
+  <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
+</div>
+      <div id="search">
+    <a id="class_list_link" href="#">Class List</a>
+    <a id="method_list_link" href="#">Method List</a>
+    <a id="file_list_link" href="#">File List</a>
+</div>
+      <div class="clear"></div>
+    </div>
+    <iframe id="search_frame"></iframe>
+    <div id="content"><h1>Class: Lims::Core::Persistence::Logger::Session
+</h1>
+<dl class="box">
+    <dt class="r1">Inherits:</dt>
+    <dd class="r1">
+      <span class="inheritName"><span class='object_link'><a href="../Session.html" title="Lims::Core::Persistence::Session (class)">Session</a></span></span>
+        <ul class="fullTree">
+          <li><span class='object_link'><a href="../../../../Object.html" title="Object (class)">Object</a></span></li>
+            <li class="next"><span class='object_link'><a href="../Session.html" title="Lims::Core::Persistence::Session (class)">Session</a></span></li>
+            <li class="next">Lims::Core::Persistence::Logger::Session</li>
+        </ul>
+        <a href="#" class="inheritanceTree">show all</a>
+      </dd>
+    <dt class="r2 last">Defined in:</dt>
+    <dd class="r2 last">lib/lims-core/persistence/logger/session.rb</dd>
+</dl>
+<div class="clear"></div>
+<h2>Overview</h2><div class="docstring">
+  <div class="discussion">
+<p>Logger specific implementation of a <span class='object_link'><a href="../Session.html" title="Lims::Core::Persistence::Session (class)">Session</a></span>.</p>
+  </div>
+</div>
+<div class="tags">
+</div>
+  <h2>Instance Attribute Summary <small>(<a href="#" class="summary_toggle">collapse</a>)</small></h2>
+  <ul class="summary">
+      <li class="public ">
+  <span class="summary_signature">
+      <a href="#indent_level-instance_method" title="#indent_level (instance method)">- (Object) <strong>indent_level</strong> </a>
+  </span>
+    <span class="note title readonly">readonly</span>
+    <span class="summary_desc"><div class='inline'>
+<p>Returns the value of attribute indent_level.</p>
+</div></span>
+</li>
+  </ul>
+  <h3 class="inherited">Attributes inherited from <span class='object_link'><a href="../Session.html" title="Lims::Core::Persistence::Session (class)">Session</a></span></h3>
+  <p class="inherited"><span class='object_link'><a href="../Session.html#dirty_attribute_strategy-instance_method" title="Lims::Core::Persistence::Session#dirty_attribute_strategy (method)">dirty_attribute_strategy</a></span></p>
+    <h2>
+      Instance Method Summary
+      <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
+    </h2>
+    <ul class="summary">
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#initialize-instance_method" title="#initialize (instance method)">- (Session) <strong>initialize</strong>(*args, &amp;block) </a>
+  </span>
+    <span class="note title constructor">constructor</span>
+    <span class="summary_desc"><div class='inline'>
+<p>A new instance of Session.</p>
+</div></span>
+</li>
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#log-instance_method" title="#log (instance method)">- (Object) <strong>log</strong>(msg) </a>
+  </span>
+    <span class="summary_desc"><div class='inline'></div></span>
+</li>
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#with_indent-instance_method" title="#with_indent (instance method)">- (Object) <strong>with_indent</strong>(indent = &quot; - &quot;, &amp;block) </a>
+  </span>
+    <span class="summary_desc"><div class='inline'>
+<p>Execute a block with the specified indent level indicator.</p>
+</div></span>
+</li>
+    </ul>
+  <h3 class="inherited">Methods inherited from <span class='object_link'><a href="../Session.html" title="Lims::Core::Persistence::Session (class)">Session</a></span></h3>
+  <p class="inherited"><span class='object_link'><a href="../Session.html#%3C%3C-instance_method" title="Lims::Core::Persistence::Session#&lt;&lt; (method)">#<<</a></span>, <span class='object_link'><a href="../Session.html#delete-instance_method" title="Lims::Core::Persistence::Session#delete (method)">#delete</a></span>, <span class='object_link'><a href="../Session.html#dirty_key_for-instance_method" title="Lims::Core::Persistence::Session#dirty_key_for (method)">#dirty_key_for</a></span>, <span class='object_link'><a href="../Session.html#filter-instance_method" title="Lims::Core::Persistence::Session#filter (method)">#filter</a></span>, <span class='object_link'><a href="../Session.html#find_or_create_persistor_for-class_method" title="Lims::Core::Persistence::Session.find_or_create_persistor_for (method)">find_or_create_persistor_for</a></span>, <span class='object_link'><a href="../Session.html#id_for-instance_method" title="Lims::Core::Persistence::Session#id_for (method)">#id_for</a></span>, <span class='object_link'><a href="../Session.html#id_for%21-instance_method" title="Lims::Core::Persistence::Session#id_for! (method)">#id_for!</a></span>, <span class='object_link'><a href="../Session.html#manage_state-instance_method" title="Lims::Core::Persistence::Session#manage_state (method)">#manage_state</a></span>, <span class='object_link'><a href="../Session.html#managed%3F-instance_method" title="Lims::Core::Persistence::Session#managed? (method)">#managed?</a></span>, <span class='object_link'><a href="../Session.html#method_missing-instance_method" title="Lims::Core::Persistence::Session#method_missing (method)">#method_missing</a></span>, <span class='object_link'><a href="../Session.html#model_for-class_method" title="Lims::Core::Persistence::Session.model_for (method)">model_for</a></span>, <span class='object_link'><a href="../Session.html#model_map-class_method" title="Lims::Core::Persistence::Session.model_map (method)">model_map</a></span>, <span class='object_link'><a href="../Session.html#model_to_name-class_method" title="Lims::Core::Persistence::Session.model_to_name (method)">model_to_name</a></span>, <span class='object_link'><a href="../Session.html#name_to_model-class_method" title="Lims::Core::Persistence::Session.name_to_model (method)">name_to_model</a></span>, <span class='object_link'><a href="../Session.html#pack_uuid-class_method" title="Lims::Core::Persistence::Session.pack_uuid (method)">pack_uuid</a></span>, <span class='object_link'><a href="../Session.html#pack_uuid-instance_method" title="Lims::Core::Persistence::Session#pack_uuid (method)">#pack_uuid</a></span>, <span class='object_link'><a href="../Session.html#persistor_class_for-class_method" title="Lims::Core::Persistence::Session.persistor_class_for (method)">persistor_class_for</a></span>, <span class='object_link'><a href="../Session.html#persistor_class_map-class_method" title="Lims::Core::Persistence::Session.persistor_class_map (method)">persistor_class_map</a></span>, <span class='object_link'><a href="../Session.html#persistor_for-instance_method" title="Lims::Core::Persistence::Session#persistor_for (method)">#persistor_for</a></span>, <span class='object_link'><a href="../Session.html#persistor_name_for-class_method" title="Lims::Core::Persistence::Session.persistor_name_for (method)">persistor_name_for</a></span>, <span class='object_link'><a href="../Session.html#persistor_name_for-instance_method" title="Lims::Core::Persistence::Session#persistor_name_for (method)">#persistor_name_for</a></span>, <span class='object_link'><a href="../Session.html#register_model-class_method" title="Lims::Core::Persistence::Session.register_model (method)">register_model</a></span>, <span class='object_link'><a href="../Session.html#save_all-instance_method" title="Lims::Core::Persistence::Session#save_all (method)">#save_all</a></span>, <span class='object_link'><a href="../Session.html#serialize-instance_method" title="Lims::Core::Persistence::Session#serialize (method)">#serialize</a></span>, <span class='object_link'><a href="../Session.html#state_for-instance_method" title="Lims::Core::Persistence::Session#state_for (method)">#state_for</a></span>, <span class='object_link'><a href="../Session.html#states_for-instance_method" title="Lims::Core::Persistence::Session#states_for (method)">#states_for</a></span>, <span class='object_link'><a href="../Session.html#unpack_uuid-class_method" title="Lims::Core::Persistence::Session.unpack_uuid (method)">unpack_uuid</a></span>, <span class='object_link'><a href="../Session.html#unpack_uuid-instance_method" title="Lims::Core::Persistence::Session#unpack_uuid (method)">#unpack_uuid</a></span>, <span class='object_link'><a href="../Session.html#unserialize-instance_method" title="Lims::Core::Persistence::Session#unserialize (method)">#unserialize</a></span>, <span class='object_link'><a href="../Session.html#with_session-instance_method" title="Lims::Core::Persistence::Session#with_session (method)">#with_session</a></span></p>
+  <div id="constructor_details" class="method_details_list">
+  <h2>Constructor Details</h2>
+    <div class="method_details first">
+  <p class="signature first" id="initialize-instance_method">
+    - (<tt><span class='object_link'><a href="" title="Lims::Core::Persistence::Logger::Session (class)">Session</a></span></tt>) <strong>initialize</strong>(*args, &amp;block)
+</p><div class="docstring">
+  <div class="discussion">
+<p>A new instance of Session</p>
+  </div>
+</div>
+<div class="tags">
+</div><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+13
+14
+15
+16</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/logger/session.rb', line 13</span>
+<span class='kw'>def</span> <span class='id initialize'>initialize</span><span class='lparen'>(</span><span class='op'>*</span><span class='id args'>args</span><span class='comma'>,</span> <span class='op'>&amp;</span><span class='id block'>block</span><span class='rparen'>)</span>
+  <span class='ivar'>@indent_level</span> <span class='op'>=</span> <span class='tstring'><span class='tstring_beg'>&quot;</span><span class='tstring_end'>&quot;</span></span>
+  <span class='kw'>super</span><span class='lparen'>(</span><span class='op'>*</span><span class='id args'>args</span><span class='comma'>,</span> <span class='op'>&amp;</span><span class='id block'>block</span><span class='rparen'>)</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+</div>
+<div id="method_missing_details" class="method_details_list">
+  <h2>Dynamic Method Handling</h2>
+  <p class="notice super">
+    This class handles dynamic methods through the <tt>method_missing</tt> method
+      in the class <span class='object_link'><a href="../Session.html#method_missing-instance_method" title="Lims::Core::Persistence::Session#method_missing (method)">Lims::Core::Persistence::Session</a></span>
+  </p>
+</div>
+  <div id="instance_attr_details" class="attr_details">
+    <h2>Instance Attribute Details</h2>
+      <span id=""></span>
+      <span id="indent_level-instance_method"></span>
+      <div class="method_details first">
+  <p class="signature first" id="indent_level-instance_method">
+    - (<tt><span class='object_link'><a href="../../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>indent_level</strong>  <span class="extras">(readonly)</span>
+</p><div class="docstring">
+  <div class="discussion">
+<p>Returns the value of attribute indent_level</p>
+  </div>
+</div>
+<div class="tags">
+</div><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+12
+13
+14</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/logger/session.rb', line 12</span>
+<span class='kw'>def</span> <span class='id indent_level'>indent_level</span>
+  <span class='ivar'>@indent_level</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+  </div>
+  <div id="instance_method_details" class="method_details_list">
+    <h2>Instance Method Details</h2>
+      <div class="method_details first">
+  <p class="signature first" id="log-instance_method">
+    - (<tt><span class='object_link'><a href="../../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>log</strong>(msg)
+</p><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+18
+19
+20</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/logger/session.rb', line 18</span>
+<span class='kw'>def</span> <span class='id log'>log</span><span class='lparen'>(</span><span class='id msg'>msg</span><span class='rparen'>)</span>
+  <span class='ivar'>@store</span><span class='period'>.</span><span class='id log'>log</span><span class='lparen'>(</span><span class='id indent_level'>indent_level</span><span class='op'>+</span><span class='id msg'>msg</span><span class='rparen'>)</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+      <div class="method_details ">
+  <p class="signature " id="with_indent-instance_method">
+    - (<tt><span class='object_link'><a href="../../../../Object.html" title="Object (class)">Object</a></span></tt>) <strong>with_indent</strong>(indent = &quot; - &quot;, &amp;block)
+</p><div class="docstring">
+  <div class="discussion">
+<p>Execute a block with the specified indent level indicator.</p>
+  </div>
+</div>
+<div class="tags">
+  <h3>Parameters:</h3>
+<ul class="param">
+    <li>
+        <span class='name'>indent</span>
+        <span class='type'>(<tt>String</tt>)</span>
+        <em class="default">(defaults to: <tt>&quot; - &quot;</tt>)</em>
+        &mdash;
+        <div class='inline'>
+<p>the indent level indicator</p>
+</div>
+    </li>
+</ul>
+</div><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+24
+25
+26</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/lims-core/persistence/logger/session.rb', line 24</span>
+<span class='kw'>def</span> <span class='id with_indent'>with_indent</span><span class='lparen'>(</span><span class='id indent'>indent</span><span class='op'>=</span><span class='tstring'><span class='tstring_beg'>&quot;</span><span class='tstring_content'> - </span><span class='tstring_end'>&quot;</span></span><span class='comma'>,</span> <span class='op'>&amp;</span><span class='id block'>block</span><span class='rparen'>)</span>
+  <span class='id temporarily'>temporarily</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>@indent_level</span><span class='tstring_end'>'</span></span> <span class='op'>=&gt;</span> <span class='ivar'>@indent_level</span><span class='op'>+</span><span class='id indent'>indent</span><span class='comma'>,</span> <span class='op'>&amp;</span><span class='id block'>block</span><span class='rparen'>)</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+  </div>
+</div>
+  </body>
+</html>