de.oddb 2.0.0

data/README

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+de.oddb.org - OpenDrugDatabase for Germany
+==========================================
+Below notes go by timeline. The most uptodate is on top.
+
+11:15 - 26.10.2010
+
+If you want to import a PDF directly, do
+
+  $ jobs/import_gkv pdf=http://www.xxx.com/abc.pdf
+
+15:21 - 02.09.2010
+
+Granting PowerUser and Admin privileges:
+
+	yus_grant email@ywesee.com login org.oddb.de.PowerUser
+
+and
+
+	yus_grant email@ywesee.com login org.oddb.de.Admin
+
+14.34 - 01.09.2010
+
+For exporting the chde.xls the
+
+	readonlyd
+
+has to run at ch.oddb.org on localhost:10013. Also the
+currencyd has to run on localhost:10999
+
+I also had to change the require path for 
+
+	multilingual
+
+from
+
+	oddb.org/src/remote/galenic_group.rb:#require 'oddb/util/multilingual'
+
+to
+
+	/oddb.org/src/remote/galenic_group.rb:require 'src/remote/multilingual'
+
+10.14 - 01.09.2010
+
+The 
+
+	/var/www/de.oddb.org/lib/oddb/drugs/sequence.rb
+
+should not be overwritten with the 
+
+	sequence.rb (68 lines of code)
+
+file from the pure
+	
+	ODDB (64 lines of code)
+
+Library, or the Painfo.yaml and Fachinfo.yaml will fail with a 
+
+	undefined method `cascading_name' for #<ODDB::Drugs::Sequence:0xb5080fec>
+
+error.
+
+16.36 - 30.08.2010
+
+Always execute the the jobs of de.oddb.org from ../jobs otherwise the
+scripts will create a var directory in the jobs directory. And you don't
+want that!
+
+I also noted that if you do not use the plain ODDB Library from the scm
+but only the files from 
+
+	de.oddb.org/lib/oddb/
+
+then you will have to add some files from the pure ODDB-Library. Follow the
+errors you get when you start-up
+
+	bin/oddb
+
+08.30 - 30.08.2010
+
+Running
+
+	sudo ./export_fachinfos
+
+results in
+
+	/usr/lib/ruby/1.8/net/smtp.rb:562:in `check_auth_args': both user and secret are required (ArgumentError)
+        from /home/zeno/.software/de.oddb.org/lib/oddb/util/smtp_tls.rb:8:in `do_start'
+        from /usr/lib/ruby/1.8/net/smtp.rb:377:in `start'
+        from /usr/lib/ruby/1.8/net/smtp.rb:315:in `start'
+        from /usr/lib/ruby/site_ruby/1.8/oddb/util/mail.rb:77:in `sendmail'
+        from /usr/lib/ruby/site_ruby/1.8/oddb/util/mail.rb:27:in `notify_admins'
+        from /home/zeno/.software/de.oddb.org/lib/oddb/export/server.rb:73:in `safe_export'
+        from /home/zeno/.software/de.oddb.org/lib/oddb/export/server.rb:32:in `export_fachinfo_yaml'
+        from ./export_fachinfo_yaml:17
+        from /usr/lib/ruby/site_ruby/1.8/oddb/util/job.rb:16:in `call'
+        from /usr/lib/ruby/site_ruby/1.8/oddb/util/job.rb:16:in `run'
+        from ./export_fachinfo_yaml:16
+
+There must be a configuration somewhere that sets the Mail-sending method. Looking into this now.
+
+08.15 - 30.08.2010
+
+This commit made the difference to start-up de.oddb.org.
+
+	http://scm.ywesee.com/?p=oddb/.git;a=commit;h=d59aaecbf23461cf5c677e3c49d492600909af74
+
+The plain ODDB Library was only setup to work with the new version of
+ch.oddb.org. So all the files from 
+
+	/var/www/de.oddb.org/lib/oddb/ 
+	
+where linked to 
+
+	/usr/lib/ruby/site_ruby/1.8/oddb/
+
+But the goal is to install the ODDB-Library seperatly for de.oddb.org
+and ch.oddb.org. The config.rb file has also been replaced by the
+config.rb from /var/www/de.oddb.org/lib/oddb/ as the .config.rb was
+setup for ch.oddb.org - see this commit:
+
+	http://scm.ywesee.com/?p=oddb/.git;a=blobdiff;f=lib/oddb/config.rb;h=280cedcb751c467a58178d5c2eb24efaa2541ab2;hp=35b9efca3430ba8a6e5f83068bba117d40cc381a;hb=8e9cbd2848bd20e18ef158ea520476a183053a34;hpb=70d736e9325049dcb565f995081d65fb6298af3a
+
+11.02 - 26.08.2010
+
+changing
+
+	#    logger.error('fatal') { error }
+	        p error
+
+in
+
+	bin/oddbd
+
+and getting the following output
+
+	#<NameError: uninitialized constant ODDB::Util::Server>
+	bin/oddbd:18: uninitialized constant ODDB::Util::Server (NameError)
+
+after running
+
+	sudo bin/oddbd
+
+08.06 - 26.08.2010
+
+	bin/exportd
+
+seems to run just fine once I installed
+
+	fastercsv
+
+The version online is 1.4.0. My local version of fastercsv is 1.5.3. My 
+
+	bin/oddbd
+
+crashes right after
+
+	FEHLER:  Relation �target_id_oddb_drugs_atc_code� existiert bereits
+	FEHLER:  Relation �target_id_oddb_drugs_sequence_atc� existiert bereits
+
+this is shortly before this message should come (as it does with bin/exportd)
+
+	I, [2010-08-26T08:03:37.025071 #26182]  INFO -- start: starting export-server on druby://localhost:11001
+
+16.23 - 25.08.2010
+
+This file
+
+	/usr/lib/ruby/site_ruby/1.8/encoding/character/utf-8.rb
+
+also needs a
+
+	require 'rubygems'
+
+to get rid of the "Internal Server Error" of Apache. 
+
+I also commened out the following lines 
+
+	#    server = ODDB::Util::Server.new
+	#    logger.info('start') {
+	#      sprintf("starting oddb-server on %s", url) }
+	#    logger.error('fatal') { error }
+
+in
+
+	bin/oddb
+
+that makes de.oddb.org startup but I can not yet search. Apache still delivers some strange errors.
+
+15:30 - 25.08.2010
+
+I am getting on after importing the DB with zcat (same like with oddb.org) I run 
+
+	sudo bin/oddbd
+
+It results in
+
+	FEHLER:  Relation �target_id_oddb_drugs_package_code� existiert bereits
+
+	FEHLER:  Relation �target_id_oddb_drugs_package_substance� existiert bereits
+
+	FEHLER:  Relation �target_id_oddb_drugs_atc_code� existiert bereits
+
+	FEHLER:  Relation �target_id_oddb_drugs_sequence_atc� existiert bereits
+
+	.software/de.oddb.org/bin/oddbd:30: undefined method `error' for nil:NilClass (NoMethodError)
+
+This looks like de.oddb.org is waiting for a service but I do not know
+what kind of service it could be. It may also be just another strange
+error.
+
+13:52 - 25.08.2010
+
+I added 		
+
+	require 'rubygems'
+
+to the following files on my local machine
+
+	/usr/lib/ruby/site_ruby/1.8/oddb/fixes/singular.rb
+
+In the following file
+
+	/usr/lib/ruby/site_ruby/1.8/oddb/model.rb
+
+I changed
+
+	require 'facets/module/basename'
+
+to
+
+	require 'facet/module/basename'
+
+this made the following error go away:
+
+	/usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb:31:in `gem_original_require': no such file to load -- facets/module/basename (LoadError)
+        from /usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb:31:in `require'
+        from /usr/lib/ruby/site_ruby/1.8/oddb/model.rb:6
+        from /usr/lib/ruby/site_ruby/1.8/oddb/drugs/active_agent.rb:4:in `require'
+        from /usr/lib/ruby/site_ruby/1.8/oddb/drugs/active_agent.rb:4
+        from /usr/lib/ruby/site_ruby/1.8/oddb/drugs.rb:1:in `require'
+        from /usr/lib/ruby/site_ruby/1.8/oddb/drugs.rb:1
+        from bin/oddbd:9:in `require'
+        from bin/oddbd:9	
+
+Now I am getting
+
+	/usr/lib/ruby/site_ruby/1.8/DBD/Pg/Pg.rb:118:in `initialize': FATAL:  Datenbank >>oddb<< existiert nicht (DBI::OperationalError)
+        from /usr/lib/ruby/site_ruby/1.8/DBD/Pg/Pg.rb:62:in `new'
+        from /usr/lib/ruby/site_ruby/1.8/DBD/Pg/Pg.rb:62:in `connect'
+        from /usr/lib/ruby/site_ruby/1.8/dbi.rb:424:in `connect'
+        from /usr/lib/ruby/site_ruby/1.8/dbi.rb:215:in `connect'
+        from /usr/lib/ruby/site_ruby/1.8/odba/connection_pool.rb:60:in `_connect'
+        from /usr/lib/ruby/site_ruby/1.8/odba/connection_pool.rb:59:in `times'
+        from /usr/lib/ruby/site_ruby/1.8/odba/connection_pool.rb:59:in `_connect'
+        from /usr/lib/ruby/site_ruby/1.8/odba/connection_pool.rb:56:in `connect'
+         ... 7 levels...
+        from /usr/lib/ruby/site_ruby/1.8/oddb/persistence.rb:4
+        from /usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb:31:in `gem_original_require'
+        from /usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb:31:in `require'
+        from bin/oddbd:10
+		
+I guess I need the DB now.
+
+11:00 - 25.08.2010
+
+The following directory also did not exist on my local machine:
+
+	/usr/lib/ruby/site_ruby/1.8/fixes
+
+instead my local machine has the directory
+
+	/usr/lib/ruby/site_ruby/1.8/oddb/fixes
+
+but above directory is not on thinpower.
+
+10:00 - 25.08.2010
+
+There is a difference in the data structure of
+
+	/var/www/de.oddb.org/lib/oddb
+
+between thinpower and the my local machine _*after*_ I done a 
+git pull. There must be some files missing that where not added with
+
+	git add
+
+The files that seem to be missing on my local machine are
+
+	business.rb
+	text.rb
+
+09:00 - 25.08.2010
+
+Trying to setup de.oddb.org results in the following error:
+
+	/usr/lib/ruby/site_ruby/1.8/oddb/fixes/singular.rb:4:in `require': no such file to load -- active_support/inflector (LoadError)
+        from /usr/lib/ruby/site_ruby/1.8/oddb/fixes/singular.rb:4
+        from /usr/lib/ruby/site_ruby/1.8/oddb/model.rb:4:in `require'
+        from /usr/lib/ruby/site_ruby/1.8/oddb/model.rb:4
+        from /usr/lib/ruby/site_ruby/1.8/oddb/drugs/active_agent.rb:4:in `require'
+        from /usr/lib/ruby/site_ruby/1.8/oddb/drugs/active_agent.rb:4
+        from /usr/lib/ruby/site_ruby/1.8/oddb/drugs.rb:1:in `require'
+        from /usr/lib/ruby/site_ruby/1.8/oddb/drugs.rb:1
+        from bin/oddbd:9:in `require'
+        from bin/oddbd:9
+
+Debugging now.	
+
+Date: 2008-08-09-11:08
+
+Short Description: de.oddb.org is an OpenDrugDatabase that enables the
+search for Drugs by their ActiveAgent, Name, Producer, ATC-Code and much
+more. You can do a price comparison between the Original Drug and the
+Generic by Clicking on the Drug's Name. The database tells you a lot
+about the officially registerted Drugs in Germany (In Germany any drug
+on the market needs to be registered at Bfarm - Bundesinstitut f�r
+Arzneimittel). ODDB.org exports the complete Data in the YAML.org Format
+(34117 registred products at the moment).
+
+For for more information about the background see:
+
+        * http://www.ywesee.com
+	* http://www.oddb.org
+	* http://dev.ywesee.com
+
+
+License
+-------
+
+        * GPLv2.0
+
+Source Code Download with GIT
+-----------------------------
+
+        * URL: http://scm.ywesee.com/de.oddb.org
+
+Background
+----------
+
+A discussion on http://www.linuxmednews.org
+
+Post by Zeno: 	In Switzerland we have the problem that there is only
+one provider of the data. And that provider serves all hospitals,
+doctors, old age homes, pharmacies etc. As they have the monopoly the
+could issue a tax on every transaction that is done with there data;
+Example: The docotor in the hospital prescribes one drug to the patient.
+That info goes into the system and then gets passed on the specialist
+(external of hospital) and then gets passed on to the insurance etc.
+Imagine you must pay 50cent for every transaction of the data...
+
+Post by Tim: 	This certainly carries some pretty scary scenarios. Are
+there not laws to prevent abuse? It would seem that a government
+monoploy has been issued here and there would be protections in place.
+
+Post by Zeno: 	1. Yes, that is exactly the problem. The company that
+has the monopoly also is working for the government and administrating
+the database of all drugs that are covered by the public health
+insurance.
+
+		2. I have taken the above issues to antitrust department
+and the 'price governing' department of Switzerland. The first pushed
+the issue to the second and vice versa. I then contacted the leading
+consumer representative of Switzerland and she gave the issue some
+momentum.  
+
+		3. The result of the above was ch.oddb.org an independent
+database for Switzerland. My personal interest is the acceleration of
+the electronic data interchange in the healthcare industry. This can
+only take place on open standards.
+
+More here:
+
+        * http://www.ywesee.com/pmwiki.php/Main/WekoBlog
+	* http://www.ywesee.com/pmwiki.php/Main/Bundesgerichtsurteil
+
+Requirements
+------------
+
+        1 ruby 1.8, mod_ruby, drbsession, spreadsheet
+        2 apache, ruby-zlib, rubyzip, tarsimple, madeleine, rockit, tmail
+        3 rpdf2txt, rwv2, htmlgrid, datastructure, parseexcel, ywesee session-management
+
+Note: For 1 and 2 please search with Google. For 3 please download from
+	
+	* http://scm.ywesee.com
+
+Install
+-------
+
+Just copy everything into a directory of your choice, Configure your
+favorite Webserver to serve the $ODDBDIR/doc directory and to rewrite
+urls as follows: http://your.tld/(\w{2})/(\w+)/(\w+)/(\w+) =>
+http://your.tld/index.rbx?language=\1&flavor=\2&\3=\4 If you're
+interested in having the data that we provide online we can send you our
+ODBA snapshot. Please contact us at zdavatz@ywesee.com
+
+Install Instructions
+--------------------
+
+        * http://dev.ywesee.com/wiki.php/Oddb/InstallOddb
+
+Usage
+-----
+
+        * Normal Consumer
+        * Health Insurance (Krankenkasse)
+        * Pharmacie
+        * Hospital
+        * Doctor / Physician
+        * Pharma Marketing
+
+Authors
+-------
+
+        * ywesee GmbH
+        * Hannes Wyss <hwyss@ywesee.com>
+
+Author of this README
+---------------------
+        
+	* Zeno Davatz <zdavatz@ywesee.com>
+
+

data/README.txt

@@ -0,0 +1,25 @@
+= de.oddb
+
+* http://scm.ywesee.com/?p=de.oddb.org/.git;a=summary
+
+== DESCRIPTION:
+
+Open Drug Database for Germany. Live at http://de.oddb.org
+
+== REQUIREMENTS:
+
+* See Guide.txt
+
+== INSTALL:
+
+* sudo gem install de.oddb
+
+== DEVELOPERS:
+
+* Masaomi Hatakeyama
+* Zeno R.R. Davatz
+* Hannes Wyss (up to Version 2.0)
+
+== LICENSE:
+
+* GPLv2

data/Rakefile

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+# -*- ruby -*-
+
+require 'rubygems'
+require 'hoe'
+
+# Hoe.plugin :compiler
+# Hoe.plugin :cucumberfeatures
+# Hoe.plugin :gem_prelude_sucks
+# Hoe.plugin :inline
+# Hoe.plugin :inline
+# Hoe.plugin :manifest
+# Hoe.plugin :newgem
+# Hoe.plugin :racc
+# Hoe.plugin :rubyforge
+# Hoe.plugin :rubyforge
+# Hoe.plugin :website
+
+Hoe.spec 'de.oddb' do
+  # HEY! If you fill these out in ~/.hoe_template/Rakefile.erb then
+  # you'll never have to touch them again!
+  # (delete this comment too, of course)
+
+developer('Masaomi Hatakeyama, Zeno R.R. Davatz', 'mhatakeyama@ywesee.com, zdavatz@ywesee.com')
+
+  # self.rubyforge_name = 'de.oddbx' # if different than 'de.oddb'
+end
+
+# vim: syntax=ruby