RubyGems - biointerchange - Versions diffs - 0.2.2 → 1.0.0 - Mend

biointerchange 0.2.2 → 1.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (55) hide show

data/Gemfile +1 -0
data/README.md +269 -19
data/VERSION +1 -1
data/examples/bininda_emonds_mammals.new +1 -0
data/examples/rdfization.rb +17 -0
data/examples/tree1.new +1 -0
data/examples/tree2.new +1 -0
data/examples/vocabulary.rb +26 -5
data/generators/javaify.rb +12 -18
data/generators/make_supplement_releases.rb +2 -0
data/generators/pythonify.rb +21 -8
data/generators/rdfxml.rb +15 -1
data/lib/biointerchange/cdao.rb +2014 -0
data/lib/biointerchange/core.rb +70 -77
data/lib/biointerchange/genomics/gff3_rdf_ntriples.rb +16 -0
data/lib/biointerchange/genomics/gff3_reader.rb +18 -4
data/lib/biointerchange/genomics/gvf_reader.rb +14 -0
data/lib/biointerchange/phylogenetics/cdao_rdf_ntriples.rb +108 -0
data/lib/biointerchange/phylogenetics/newick_reader.rb +81 -0
data/lib/biointerchange/phylogenetics/tree_set.rb +50 -0
data/lib/biointerchange/registry.rb +50 -8
data/lib/biointerchange/so.rb +150 -0
data/lib/biointerchange/textmining/pdfx_xml_reader.rb +21 -2
data/lib/biointerchange/textmining/pubannos_json_reader.rb +24 -1
data/lib/biointerchange/textmining/text_mining_rdf_ntriples.rb +9 -0
data/lib/biointerchange/textmining/text_mining_reader.rb +5 -5
data/spec/phylogenetics_spec.rb +79 -0
data/supplemental/java/biointerchange/pom.xml +1 -1
data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/CDAO.java +2602 -0
data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/FALDO.java +30 -28
data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GFF3O.java +136 -104
data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GVF1O.java +367 -278
data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SIO.java +4388 -3127
data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SO.java +5970 -4351
data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SOFA.java +733 -544
data/supplemental/java/biointerchange/src/test/java/org/biointerchange/AppTest.java +3 -1
data/supplemental/python/biointerchange/cdao.py +2021 -0
data/supplemental/python/biointerchange/faldo.py +37 -38
data/supplemental/python/biointerchange/gff3o.py +156 -157
data/supplemental/python/biointerchange/goxref.py +172 -172
data/supplemental/python/biointerchange/gvf1o.py +428 -429
data/supplemental/python/biointerchange/sio.py +3133 -3134
data/supplemental/python/biointerchange/so.py +6626 -6527
data/supplemental/python/biointerchange/sofa.py +790 -791
data/supplemental/python/example.py +23 -5
data/supplemental/python/setup.py +2 -2
data/web/about.html +1 -0
data/web/api.html +223 -15
data/web/biointerchange.js +27 -6
data/web/cli.html +8 -3
data/web/index.html +6 -2
data/web/ontologies.html +3 -0
data/web/service/rdfizer.fcgi +7 -15
data/web/webservices.html +6 -2
metadata +30 -3

data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GVF1O.java CHANGED Viewed

@@ -22,7 +22,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0072)
    */
   public static Set<Resource> seqid() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0004"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0072") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0004"), _namespace_GVF1O("GVF1_0072") }));
   }
   /**
@@ -37,7 +37,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0091)
    */
   public static Set<Resource> strand() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0010"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0083"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0091") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0010"), _namespace_GVF1O("GVF1_0083"), _namespace_GVF1O("GVF1_0091") }));
   }
   /**
@@ -49,7 +49,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0152)
    */
   public static Set<Resource> attributes() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0012"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0152") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0012"), _namespace_GVF1O("GVF1_0152") }));
   }
   /**
@@ -57,7 +57,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0014)
    */
   public static Resource parent() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0014");
+    return _namespace_GVF1O("GVF1_0014");
   }
   /**
@@ -65,7 +65,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0015)
    */
   public static Resource contains() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0015");
+    return _namespace_GVF1O("GVF1_0015");
   }
   /**
@@ -80,7 +80,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0090)
    */
   public static Set<Resource> region() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0021"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0079"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0090") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0021"), _namespace_GVF1O("GVF1_0079"), _namespace_GVF1O("GVF1_0090") }));
   }
   /**
@@ -88,7 +88,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0023)
    */
   public static Resource species() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0023");
+    return _namespace_GVF1O("GVF1_0023");
   }
   /**
@@ -96,7 +96,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0034)
    */
   public static Resource variant() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0034");
+    return _namespace_GVF1O("GVF1_0034");
   }
   /**
@@ -104,7 +104,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0036)
    */
   public static Resource individual() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0036");
+    return _namespace_GVF1O("GVF1_0036");
   }
   /**
@@ -112,7 +112,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0038)
    */
   public static Resource zygosity() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0038");
+    return _namespace_GVF1O("GVF1_0038");
   }
   /**
@@ -120,7 +120,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0041)
    */
   public static Resource effect() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0041");
+    return _namespace_GVF1O("GVF1_0041");
   }
   /**
@@ -128,7 +128,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0042)
    */
   public static Resource sequence_variant() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0042");
+    return _namespace_GVF1O("GVF1_0042");
   }
   /**
@@ -136,7 +136,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0043)
    */
   public static Resource feature_type() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0043");
+    return _namespace_GVF1O("GVF1_0043");
   }
   /**
@@ -144,7 +144,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0046)
    */
   public static Resource start_range() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0046");
+    return _namespace_GVF1O("GVF1_0046");
   }
   /**
@@ -152,7 +152,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0047)
    */
   public static Resource end_range() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0047");
+    return _namespace_GVF1O("GVF1_0047");
   }
   /**
@@ -160,7 +160,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0051)
    */
   public static Resource chromosome() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0051");
+    return _namespace_GVF1O("GVF1_0051");
   }
   /**
@@ -168,7 +168,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0053)
    */
   public static Resource genotype() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0053");
+    return _namespace_GVF1O("GVF1_0053");
   }
   /**
@@ -180,7 +180,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0059)
    */
   public static Set<Resource> feature_properties() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0066"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0059") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0066"), _namespace_GVF1O("GVF1_0059") }));
   }
   /**
@@ -192,7 +192,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0065)
    */
   public static Set<Resource> sequencedindividual_properties() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0067"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0065") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0067"), _namespace_GVF1O("GVF1_0065") }));
   }
   /**
@@ -204,7 +204,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0063)
    */
   public static Set<Resource> set_properties() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0068"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0063") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0068"), _namespace_GVF1O("GVF1_0063") }));
   }
   /**
@@ -216,7 +216,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0060)
    */
   public static Set<Resource> variant_properties() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0069"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0060") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0069"), _namespace_GVF1O("GVF1_0060") }));
   }
   /**
@@ -228,7 +228,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0158)
    */
   public static Set<Resource> effect_properties() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0070"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0158") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0070"), _namespace_GVF1O("GVF1_0158") }));
   }
   /**
@@ -240,7 +240,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0071)
    */
   public static Set<Resource> breakpoint_properties() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0075"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0071") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0075"), _namespace_GVF1O("GVF1_0071") }));
   }
   /**
@@ -252,7 +252,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0104)
    */
   public static Set<Resource> dbxref() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0078"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0104") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0078"), _namespace_GVF1O("GVF1_0104") }));
   }
   /**
@@ -260,7 +260,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0080)
    */
   public static Resource breakpoint() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0080");
+    return _namespace_GVF1O("GVF1_0080");
   }
   /**
@@ -272,7 +272,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0092)
    */
   public static Set<Resource> target_properties() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0089"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0092") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0089"), _namespace_GVF1O("GVF1_0092") }));
   }
   /**
@@ -284,7 +284,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0107)
    */
   public static Set<Resource> technologyplatform_properties() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0102"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0107") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0102"), _namespace_GVF1O("GVF1_0107") }));
   }
   /**
@@ -292,7 +292,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0103)
    */
   public static Resource datasource_properties() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0103");
+    return _namespace_GVF1O("GVF1_0103");
   }
   /**
@@ -304,7 +304,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0113)
    */
   public static Set<Resource> structuredpragma_properties() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0112"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0113") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0112"), _namespace_GVF1O("GVF1_0113") }));
   }
   /**
@@ -312,7 +312,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0119)
    */
   public static Resource read_type() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0119");
+    return _namespace_GVF1O("GVF1_0119");
   }
   /**
@@ -320,7 +320,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0120)
    */
   public static Resource data_type() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0120");
+    return _namespace_GVF1O("GVF1_0120");
   }
   /**
@@ -328,7 +328,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0121)
    */
   public static Resource technology_platform() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0121");
+    return _namespace_GVF1O("GVF1_0121");
   }
   /**
@@ -336,7 +336,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0122)
    */
   public static Resource data_source() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0122");
+    return _namespace_GVF1O("GVF1_0122");
   }
   /**
@@ -344,7 +344,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0123)
    */
   public static Resource score_method() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0123");
+    return _namespace_GVF1O("GVF1_0123");
   }
   /**
@@ -352,7 +352,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0124)
    */
   public static Resource source_method() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0124");
+    return _namespace_GVF1O("GVF1_0124");
   }
   /**
@@ -360,7 +360,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0125)
    */
   public static Resource phenotype_description() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0125");
+    return _namespace_GVF1O("GVF1_0125");
   }
   /**
@@ -381,7 +381,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0131)
    */
   public static Set<Resource> attribute_method() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0126"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0127"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0129"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0130"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0131") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0126"), _namespace_GVF1O("GVF1_0127"), _namespace_GVF1O("GVF1_0129"), _namespace_GVF1O("GVF1_0130"), _namespace_GVF1O("GVF1_0131") }));
   }
   /**
@@ -393,7 +393,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0064)
    */
   public static Set<Resource> attribute_properties() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0128"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0064") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0128"), _namespace_GVF1O("GVF1_0064") }));
   }
   /**
@@ -401,7 +401,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0147)
    */
   public static Resource sex() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0147");
+    return _namespace_GVF1O("GVF1_0147");
   }
   /**
@@ -409,7 +409,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0148)
    */
   public static Resource genomic_source() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0148");
+    return _namespace_GVF1O("GVF1_0148");
   }
   /**
@@ -417,7 +417,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0150)
    */
   public static Resource feature_ontology() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0150");
+    return _namespace_GVF1O("GVF1_0150");
   }
   /**
@@ -425,7 +425,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0155)
    */
   public static Resource target() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0155");
+    return _namespace_GVF1O("GVF1_0155");
   }
   /**
@@ -433,7 +433,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0005)
    */
   public static Resource source() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0005");
+    return _namespace_GVF1O("GVF1_0005");
   }
   /**
@@ -441,7 +441,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0006)
    */
   public static Resource type() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0006");
+    return _namespace_GVF1O("GVF1_0006");
   }
   /**
@@ -462,7 +462,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0138)
    */
   public static Set<Resource> start() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0007"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0048"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0073"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0094"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0138") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0007"), _namespace_GVF1O("GVF1_0048"), _namespace_GVF1O("GVF1_0073"), _namespace_GVF1O("GVF1_0094"), _namespace_GVF1O("GVF1_0138") }));
   }
   /**
@@ -483,7 +483,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0139)
    */
   public static Set<Resource> end() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0008"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0049"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0074"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0095"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0139") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0008"), _namespace_GVF1O("GVF1_0049"), _namespace_GVF1O("GVF1_0074"), _namespace_GVF1O("GVF1_0095"), _namespace_GVF1O("GVF1_0139") }));
   }
   /**
@@ -491,7 +491,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0009)
    */
   public static Resource score() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0009");
+    return _namespace_GVF1O("GVF1_0009");
   }
   /**
@@ -503,7 +503,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0154)
    */
   public static Set<Resource> tag() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0013"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0154") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0013"), _namespace_GVF1O("GVF1_0154") }));
   }
   /**
@@ -511,7 +511,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0022)
    */
   public static Resource gvf_version() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0022");
+    return _namespace_GVF1O("GVF1_0022");
   }
   /**
@@ -519,7 +519,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0024)
    */
   public static Resource build() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0024");
+    return _namespace_GVF1O("GVF1_0024");
   }
   /**
@@ -527,7 +527,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0025)
    */
   public static Resource variant_seq() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0025");
+    return _namespace_GVF1O("GVF1_0025");
   }
   /**
@@ -539,7 +539,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0137)
    */
   public static Set<Resource> id() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0026"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0137") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0026"), _namespace_GVF1O("GVF1_0137") }));
   }
   /**
@@ -547,7 +547,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0027)
    */
   public static Resource alias() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0027");
+    return _namespace_GVF1O("GVF1_0027");
   }
   /**
@@ -555,7 +555,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0031)
    */
   public static Resource reference_seq() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0031");
+    return _namespace_GVF1O("GVF1_0031");
   }
   /**
@@ -563,7 +563,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0032)
    */
   public static Resource variant_reads() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0032");
+    return _namespace_GVF1O("GVF1_0032");
   }
   /**
@@ -571,7 +571,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0037)
    */
   public static Resource total_reads() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0037");
+    return _namespace_GVF1O("GVF1_0037");
   }
   /**
@@ -579,7 +579,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0039)
    */
   public static Resource variant_freq() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0039");
+    return _namespace_GVF1O("GVF1_0039");
   }
   /**
@@ -587,7 +587,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0044)
    */
   public static Resource feature() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0044");
+    return _namespace_GVF1O("GVF1_0044");
   }
   /**
@@ -599,7 +599,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0101)
    */
   public static Set<Resource> phased() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0050"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0101") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0050"), _namespace_GVF1O("GVF1_0101") }));
   }
   /**
@@ -607,7 +607,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0054)
    */
   public static Resource variant_codon() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0054");
+    return _namespace_GVF1O("GVF1_0054");
   }
   /**
@@ -615,7 +615,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0055)
    */
   public static Resource reference_codon() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0055");
+    return _namespace_GVF1O("GVF1_0055");
   }
   /**
@@ -623,7 +623,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0056)
    */
   public static Resource variant_aa() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0056");
+    return _namespace_GVF1O("GVF1_0056");
   }
   /**
@@ -631,7 +631,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0057)
    */
   public static Resource reference_aa() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0057");
+    return _namespace_GVF1O("GVF1_0057");
   }
   /**
@@ -639,7 +639,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0061)
    */
   public static Resource range_properties() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0061");
+    return _namespace_GVF1O("GVF1_0061");
   }
   /**
@@ -647,7 +647,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0076)
    */
   public static Resource a_context() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0076");
+    return _namespace_GVF1O("GVF1_0076");
   }
   /**
@@ -655,7 +655,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0081)
    */
   public static Resource gff_version() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0081");
+    return _namespace_GVF1O("GVF1_0081");
   }
   /**
@@ -663,7 +663,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0082)
    */
   public static Resource file_date() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0082");
+    return _namespace_GVF1O("GVF1_0082");
   }
   /**
@@ -671,7 +671,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0093)
    */
   public static Resource target_id() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0093");
+    return _namespace_GVF1O("GVF1_0093");
   }
   /**
@@ -679,7 +679,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0096)
    */
   public static Resource ontology_term() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0096");
+    return _namespace_GVF1O("GVF1_0096");
   }
   /**
@@ -687,7 +687,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0105)
    */
   public static Resource comment() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0105");
+    return _namespace_GVF1O("GVF1_0105");
   }
   /**
@@ -695,7 +695,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0106)
    */
   public static Resource platform_class() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0106");
+    return _namespace_GVF1O("GVF1_0106");
   }
   /**
@@ -703,7 +703,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0108)
    */
   public static Resource platform_name() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0108");
+    return _namespace_GVF1O("GVF1_0108");
   }
   /**
@@ -711,7 +711,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0132)
    */
   public static Resource read_length() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0132");
+    return _namespace_GVF1O("GVF1_0132");
   }
   /**
@@ -719,7 +719,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0133)
    */
   public static Resource read_pair_span() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0133");
+    return _namespace_GVF1O("GVF1_0133");
   }
   /**
@@ -727,7 +727,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0134)
    */
   public static Resource average_coverage() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0134");
+    return _namespace_GVF1O("GVF1_0134");
   }
   /**
@@ -735,7 +735,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0136)
    */
   public static Resource landmark_properties() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0136");
+    return _namespace_GVF1O("GVF1_0136");
   }
   /**
@@ -743,7 +743,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0149)
    */
   public static Resource file_version() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0149");
+    return _namespace_GVF1O("GVF1_0149");
   }
   /**
@@ -751,7 +751,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0153)
    */
   public static Resource structuredattribute_properties() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0153");
+    return _namespace_GVF1O("GVF1_0153");
   }
   /**
@@ -763,7 +763,7 @@ public class GVF1O {
    *   (http://www.biointerchange.org/gvf1o#GVF1_0157)
    */
   public static Set<Resource> sequence() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0156"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0157") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0156"), _namespace_GVF1O("GVF1_0157") }));
   }
   /**
@@ -771,7 +771,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0001)
    */
   public static Resource Set() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0001");
+    return _namespace_GVF1O("GVF1_0001");
   }
   /**
@@ -779,7 +779,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0002)
    */
   public static Resource Feature() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0002");
+    return _namespace_GVF1O("GVF1_0002");
   }
   /**
@@ -787,7 +787,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0003)
    */
   public static Resource Attribute() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0003");
+    return _namespace_GVF1O("GVF1_0003");
   }
   /**
@@ -795,7 +795,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0016)
    */
   public static Resource Strand() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0016");
+    return _namespace_GVF1O("GVF1_0016");
   }
   /**
@@ -803,7 +803,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0033)
    */
   public static Resource Variant() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0033");
+    return _namespace_GVF1O("GVF1_0033");
   }
   /**
@@ -811,7 +811,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0035)
    */
   public static Resource SequencedIndividual() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0035");
+    return _namespace_GVF1O("GVF1_0035");
   }
   /**
@@ -819,7 +819,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0040)
    */
   public static Resource Effect() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0040");
+    return _namespace_GVF1O("GVF1_0040");
   }
   /**
@@ -827,7 +827,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0045)
    */
   public static Resource Range() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0045");
+    return _namespace_GVF1O("GVF1_0045");
   }
   /**
@@ -835,7 +835,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0052)
    */
   public static Resource Chromosome() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0052");
+    return _namespace_GVF1O("GVF1_0052");
   }
   /**
@@ -843,7 +843,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0058)
    */
   public static Resource Breakpoint() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0058");
+    return _namespace_GVF1O("GVF1_0058");
   }
   /**
@@ -851,7 +851,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0084)
    */
   public static Resource Zygosity() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0084");
+    return _namespace_GVF1O("GVF1_0084");
   }
   /**
@@ -859,7 +859,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0088)
    */
   public static Resource Target() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0088");
+    return _namespace_GVF1O("GVF1_0088");
   }
   /**
@@ -867,7 +867,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0097)
    */
   public static Resource TechnologyPlatform() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0097");
+    return _namespace_GVF1O("GVF1_0097");
   }
   /**
@@ -875,7 +875,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0098)
    */
   public static Resource DataSource() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0098");
+    return _namespace_GVF1O("GVF1_0098");
   }
   /**
@@ -883,7 +883,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0099)
    */
   public static Resource Method() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0099");
+    return _namespace_GVF1O("GVF1_0099");
   }
   /**
@@ -891,7 +891,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0100)
    */
   public static Resource PhenotypeDescription() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0100");
+    return _namespace_GVF1O("GVF1_0100");
   }
   /**
@@ -899,7 +899,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0109)
    */
   public static Resource ReadType() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0109");
+    return _namespace_GVF1O("GVF1_0109");
   }
   /**
@@ -907,7 +907,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0114)
    */
   public static Resource DataType() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0114");
+    return _namespace_GVF1O("GVF1_0114");
   }
   /**
@@ -915,7 +915,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0135)
    */
   public static Resource Landmark() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0135");
+    return _namespace_GVF1O("GVF1_0135");
   }
   /**
@@ -923,7 +923,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0140)
    */
   public static Resource Sex() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0140");
+    return _namespace_GVF1O("GVF1_0140");
   }
   /**
@@ -931,7 +931,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0141)
    */
   public static Resource GenomicSource() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0141");
+    return _namespace_GVF1O("GVF1_0141");
   }
   /**
@@ -939,7 +939,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0151)
    */
   public static Resource StructuredAttribute() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0151");
+    return _namespace_GVF1O("GVF1_0151");
   }
   /**
@@ -947,7 +947,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0017)
    */
   public static Resource Positive() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0017");
+    return _namespace_GVF1O("GVF1_0017");
   }
   /**
@@ -955,7 +955,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0018)
    */
   public static Resource Negative() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0018");
+    return _namespace_GVF1O("GVF1_0018");
   }
   /**
@@ -963,7 +963,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0019)
    */
   public static Resource UnknownStrand() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0019");
+    return _namespace_GVF1O("GVF1_0019");
   }
   /**
@@ -971,7 +971,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0020)
    */
   public static Resource NotStranded() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0020");
+    return _namespace_GVF1O("GVF1_0020");
   }
   /**
@@ -979,7 +979,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0085)
    */
   public static Resource Heterozygous() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0085");
+    return _namespace_GVF1O("GVF1_0085");
   }
   /**
@@ -987,7 +987,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0086)
    */
   public static Resource Homozygous() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0086");
+    return _namespace_GVF1O("GVF1_0086");
   }
   /**
@@ -995,7 +995,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0087)
    */
   public static Resource Hemizygous() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0087");
+    return _namespace_GVF1O("GVF1_0087");
   }
   /**
@@ -1003,7 +1003,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0110)
    */
   public static Resource Fragment() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0110");
+    return _namespace_GVF1O("GVF1_0110");
   }
   /**
@@ -1011,7 +1011,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0111)
    */
   public static Resource Pair() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0111");
+    return _namespace_GVF1O("GVF1_0111");
   }
   /**
@@ -1019,7 +1019,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0115)
    */
   public static Resource DNASequence() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0115");
+    return _namespace_GVF1O("GVF1_0115");
   }
   /**
@@ -1027,7 +1027,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0116)
    */
   public static Resource RNASequence() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0116");
+    return _namespace_GVF1O("GVF1_0116");
   }
   /**
@@ -1035,7 +1035,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0117)
    */
   public static Resource DNAMicroarray() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0117");
+    return _namespace_GVF1O("GVF1_0117");
   }
   /**
@@ -1043,7 +1043,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0118)
    */
   public static Resource ArrayComparativeGenomicHybridization() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0118");
+    return _namespace_GVF1O("GVF1_0118");
   }
   /**
@@ -1051,7 +1051,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0142)
    */
   public static Resource Female() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0142");
+    return _namespace_GVF1O("GVF1_0142");
   }
   /**
@@ -1059,7 +1059,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0143)
    */
   public static Resource Male() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0143");
+    return _namespace_GVF1O("GVF1_0143");
   }
   /**
@@ -1067,7 +1067,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0144)
    */
   public static Resource Prenatal() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0144");
+    return _namespace_GVF1O("GVF1_0144");
   }
   /**
@@ -1075,7 +1075,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0145)
    */
   public static Resource Germline() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0145");
+    return _namespace_GVF1O("GVF1_0145");
   }
   /**
@@ -1083,7 +1083,7 @@ public class GVF1O {
    * (http://www.biointerchange.org/gvf1o#GVF1_0146)
    */
   public static Resource Somatic() {
-    return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0146");
+    return _namespace_GVF1O("GVF1_0146");
   }
   /**
@@ -1092,163 +1092,163 @@ public class GVF1O {
    * @param uri URI that is tested for being an object property
    */
   public static boolean isObjectProperty(Resource uri) {
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0004")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0004"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0010")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0010"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0012")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0012"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0014")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0014"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0015")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0015"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0021")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0021"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0023")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0023"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0034")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0034"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0036")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0036"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0038")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0038"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0041")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0041"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0042")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0042"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0043")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0043"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0046")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0046"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0047")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0047"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0051")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0051"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0053")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0053"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0066")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0066"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0067")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0067"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0068")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0068"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0069")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0069"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0070")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0070"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0072")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0072"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0075")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0075"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0078")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0078"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0079")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0079"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0080")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0080"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0083")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0083"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0089")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0089"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0090")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0090"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0091")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0091"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0102")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0102"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0103")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0103"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0104")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0104"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0112")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0112"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0119")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0119"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0120")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0120"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0121")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0121"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0122")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0122"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0123")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0123"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0124")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0124"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0125")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0125"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0126")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0126"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0127")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0127"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0128")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0128"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0129")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0129"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0130")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0130"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0131")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0131"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0147")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0147"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0148")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0148"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0150")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0150"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0152")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0152"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0155")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0155"))) {
       return true;
     }
     return false;
@@ -1260,184 +1260,184 @@ public class GVF1O {
    * @param uri URI that is tested for being a datatype property
    */
   public static boolean isDatatypeProperty(Resource uri) {
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0005")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0005"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0006")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0006"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0007")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0007"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0008")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0008"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0009")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0009"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0013")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0013"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0022")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0022"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0024")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0024"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0025")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0025"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0026")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0026"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0027")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0027"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0031")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0031"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0032")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0032"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0037")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0037"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0039")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0039"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0044")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0044"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0048")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0048"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0049")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0049"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0050")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0050"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0054")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0054"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0055")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0055"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0056")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0056"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0057")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0057"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0059")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0059"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0060")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0060"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0061")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0061"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0063")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0063"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0064")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0064"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0065")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0065"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0071")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0071"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0073")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0073"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0074")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0074"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0076")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0076"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0077")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0077"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0081")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0081"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0082")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0082"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0092")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0092"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0093")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0093"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0094")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0094"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0095")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0095"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0096")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0096"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0101")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0101"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0105")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0105"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0106")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0106"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0107")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0107"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0108")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0108"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0113")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0113"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0132")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0132"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0133")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0133"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0134")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0134"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0136")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0136"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0137")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0137"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0138")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0138"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0139")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0139"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0149")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0149"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0153")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0153"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0154")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0154"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0156")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0156"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0157")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0157"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0158")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0158"))) {
       return true;
     }
     return false;
@@ -1449,70 +1449,70 @@ public class GVF1O {
    * @param uri URI that is tested for being a class
    */
   public static boolean isClass(Resource uri) {
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0001")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0001"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0002")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0002"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0003")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0003"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0016")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0016"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0033")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0033"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0035")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0035"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0040")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0040"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0045")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0045"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0052")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0052"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0058")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0058"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0084")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0084"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0088")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0088"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0097")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0097"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0098")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0098"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0099")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0099"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0100")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0100"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0109")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0109"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0114")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0114"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0135")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0135"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0140")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0140"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0141")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0141"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0151")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0151"))) {
       return true;
     }
     return false;
@@ -1524,58 +1524,58 @@ public class GVF1O {
    * @param uri URI that is tested for being a named individual
    */
   public static boolean isNamedIndividual(Resource uri) {
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0017")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0017"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0018")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0018"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0019")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0019"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0020")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0020"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0085")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0085"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0086")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0086"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0087")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0087"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0110")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0110"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0111")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0111"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0115")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0115"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0116")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0116"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0117")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0117"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0118")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0118"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0142")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0142"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0143")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0143"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0144")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0144"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0145")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0145"))) {
       return true;
     }
-    if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0146")) {
+    if (uri.equals(_namespace_GVF1O("GVF1_0146"))) {
       return true;
     }
     return false;
@@ -1599,7 +1599,7 @@ public class GVF1O {
    */
   public static boolean hasParent(Resource uri, Resource parent) {
     if (__parent_properties.containsKey(uri)) {
-      if (__parent_properties.get(uri) == parent) {
+      if (__parent_properties.get(uri).equals(parent)) {
         return true;
       }
       return hasParent((Resource)__parent_properties.get(uri), parent);
@@ -1608,11 +1608,7 @@ public class GVF1O {
   }
   private static Resource _namespace_GVF1O(String accession) {
-    if (isClass(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#" + accession))) {
-      return ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#" + accession);
-    } else {
-      return ResourceFactory.createProperty("http://www.biointerchange.org/gvf1o#" + accession);
-    }
+    return ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#" + accession);
   }
@@ -1621,6 +1617,99 @@ public class GVF1O {
   private static Map<Resource, Resource> _init___parent_properties() {
     Map<Resource, Resource> map = new HashMap<Resource, Resource>();
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0004"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0010"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0012"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0014"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0015"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0068"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0021"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0023"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0068"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0034"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0036"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0038"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0069"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0041"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0069"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0042"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0070"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0043"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0070"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0046"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0070"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0047"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0070"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0051"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0067"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0053"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0069"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0072"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0075"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0078"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0079"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0075"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0080"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0083"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0075"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0090"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0089"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0091"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0089"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0102"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0112"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0103"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0112"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0104"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0112"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0119"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0102"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0120"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0103"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0121"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0122"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0123"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0124"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0125"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0068"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0126"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0070"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0127"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0075"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0129"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0128"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0130"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0089"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0131"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0069"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0147"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0068"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0148"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0068"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0150"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0068"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0152"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0112"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0155"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0005"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0006"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0007"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0008"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0009"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0013"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0064"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0022"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0063"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0024"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0063"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0025"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0060"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0026"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0027"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0031"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0032"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0060"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0037"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0065"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0039"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0060"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0044"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0158"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0048"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0061"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0049"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0061"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0050"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0060"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0054"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0060"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0055"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0056"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0060"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0057"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0073"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0071"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0074"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0071"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0076"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0077"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0081"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0063"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0082"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0063"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0093"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0092"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0094"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0092"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0095"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0092"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0096"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0101"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0105"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0113"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0106"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0107"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0107"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0113"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0108"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0107"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0132"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0107"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0133"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0107"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0134"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0107"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0137"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0136"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0138"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0136"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0139"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0136"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0149"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0063"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0154"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0153"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0156"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0157"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0136"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0088"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0151"));
     return map;
   }