biointerchange 0.2.2 → 1.0.0

Sign up to get free protection for your applications and to get access to all the features.
Files changed (55) hide show
  1. data/Gemfile +1 -0
  2. data/README.md +269 -19
  3. data/VERSION +1 -1
  4. data/examples/bininda_emonds_mammals.new +1 -0
  5. data/examples/rdfization.rb +17 -0
  6. data/examples/tree1.new +1 -0
  7. data/examples/tree2.new +1 -0
  8. data/examples/vocabulary.rb +26 -5
  9. data/generators/javaify.rb +12 -18
  10. data/generators/make_supplement_releases.rb +2 -0
  11. data/generators/pythonify.rb +21 -8
  12. data/generators/rdfxml.rb +15 -1
  13. data/lib/biointerchange/cdao.rb +2014 -0
  14. data/lib/biointerchange/core.rb +70 -77
  15. data/lib/biointerchange/genomics/gff3_rdf_ntriples.rb +16 -0
  16. data/lib/biointerchange/genomics/gff3_reader.rb +18 -4
  17. data/lib/biointerchange/genomics/gvf_reader.rb +14 -0
  18. data/lib/biointerchange/phylogenetics/cdao_rdf_ntriples.rb +108 -0
  19. data/lib/biointerchange/phylogenetics/newick_reader.rb +81 -0
  20. data/lib/biointerchange/phylogenetics/tree_set.rb +50 -0
  21. data/lib/biointerchange/registry.rb +50 -8
  22. data/lib/biointerchange/so.rb +150 -0
  23. data/lib/biointerchange/textmining/pdfx_xml_reader.rb +21 -2
  24. data/lib/biointerchange/textmining/pubannos_json_reader.rb +24 -1
  25. data/lib/biointerchange/textmining/text_mining_rdf_ntriples.rb +9 -0
  26. data/lib/biointerchange/textmining/text_mining_reader.rb +5 -5
  27. data/spec/phylogenetics_spec.rb +79 -0
  28. data/supplemental/java/biointerchange/pom.xml +1 -1
  29. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/CDAO.java +2602 -0
  30. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/FALDO.java +30 -28
  31. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GFF3O.java +136 -104
  32. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GVF1O.java +367 -278
  33. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SIO.java +4388 -3127
  34. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SO.java +5970 -4351
  35. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SOFA.java +733 -544
  36. data/supplemental/java/biointerchange/src/test/java/org/biointerchange/AppTest.java +3 -1
  37. data/supplemental/python/biointerchange/cdao.py +2021 -0
  38. data/supplemental/python/biointerchange/faldo.py +37 -38
  39. data/supplemental/python/biointerchange/gff3o.py +156 -157
  40. data/supplemental/python/biointerchange/goxref.py +172 -172
  41. data/supplemental/python/biointerchange/gvf1o.py +428 -429
  42. data/supplemental/python/biointerchange/sio.py +3133 -3134
  43. data/supplemental/python/biointerchange/so.py +6626 -6527
  44. data/supplemental/python/biointerchange/sofa.py +790 -791
  45. data/supplemental/python/example.py +23 -5
  46. data/supplemental/python/setup.py +2 -2
  47. data/web/about.html +1 -0
  48. data/web/api.html +223 -15
  49. data/web/biointerchange.js +27 -6
  50. data/web/cli.html +8 -3
  51. data/web/index.html +6 -2
  52. data/web/ontologies.html +3 -0
  53. data/web/service/rdfizer.fcgi +7 -15
  54. data/web/webservices.html +6 -2
  55. metadata +30 -3
@@ -0,0 +1,2602 @@
1
+ package org.biointerchange.vocabulary;
2
+ import java.util.Arrays;
3
+ import java.util.Map;
4
+ import java.util.HashMap;
5
+ import java.util.HashSet;
6
+ import java.util.Set;
7
+ import com.hp.hpl.jena.rdf.model.Property;
8
+ import com.hp.hpl.jena.rdf.model.Resource;
9
+ import com.hp.hpl.jena.rdf.model.ResourceFactory;
10
+ import org.apache.commons.collections.CollectionUtils;
11
+ import org.apache.commons.collections.Predicate;
12
+
13
+
14
+ public class CDAO {
15
+
16
+ /**
17
+ * -- No comment or description provided. --
18
+ * (http://purl.obolibrary.org/obo/CDAO_0000142)
19
+ */
20
+ public static Resource has_Character() {
21
+ return _namespace_CDAO("CDAO_0000142");
22
+ }
23
+
24
+ /**
25
+ * -- No comment or description provided. --
26
+ * (http://purl.obolibrary.org/obo/CDAO_0000143)
27
+ */
28
+ public static Resource belongs_to_Edge_as_Child() {
29
+ return _namespace_CDAO("CDAO_0000143");
30
+ }
31
+
32
+ /**
33
+ * -- No comment or description provided. --
34
+ * (http://purl.obolibrary.org/obo/CDAO_0000144)
35
+ */
36
+ public static Resource has_Ancestor() {
37
+ return _namespace_CDAO("CDAO_0000144");
38
+ }
39
+
40
+ /**
41
+ * -- No comment or description provided. --
42
+ * (http://purl.obolibrary.org/obo/CDAO_0000145)
43
+ */
44
+ public static Resource has_Nucleotide_State() {
45
+ return _namespace_CDAO("CDAO_0000145");
46
+ }
47
+
48
+ /**
49
+ * -- No comment or description provided. --
50
+ * (http://purl.obolibrary.org/obo/CDAO_0000146)
51
+ */
52
+ public static Resource belongs_to_Edge() {
53
+ return _namespace_CDAO("CDAO_0000146");
54
+ }
55
+
56
+ /**
57
+ * -- No comment or description provided. --
58
+ * (http://purl.obolibrary.org/obo/CDAO_0000147)
59
+ */
60
+ public static Resource belongs_to_Character_State_Data_Matrix() {
61
+ return _namespace_CDAO("CDAO_0000147");
62
+ }
63
+
64
+ /**
65
+ * -- No comment or description provided. --
66
+ * (http://purl.obolibrary.org/obo/CDAO_0000148)
67
+ */
68
+ public static Resource has_Root() {
69
+ return _namespace_CDAO("CDAO_0000148");
70
+ }
71
+
72
+ /**
73
+ * -- No comment or description provided. --
74
+ * (http://purl.obolibrary.org/obo/CDAO_0000149)
75
+ */
76
+ public static Resource has_Child() {
77
+ return _namespace_CDAO("CDAO_0000149");
78
+ }
79
+
80
+ /**
81
+ * -- No comment or description provided. --
82
+ * (http://purl.obolibrary.org/obo/CDAO_0000150)
83
+ */
84
+ public static Resource has_First_Coordinate_Item() {
85
+ return _namespace_CDAO("CDAO_0000150");
86
+ }
87
+
88
+ /**
89
+ * -- No comment or description provided. --
90
+ * (http://purl.obolibrary.org/obo/CDAO_0000151)
91
+ */
92
+ public static Resource has_Coordinate() {
93
+ return _namespace_CDAO("CDAO_0000151");
94
+ }
95
+
96
+ /**
97
+ * -- No comment or description provided. --
98
+ * (http://purl.obolibrary.org/obo/CDAO_0000152)
99
+ */
100
+ public static Resource belongs_to_Continuous_Character() {
101
+ return _namespace_CDAO("CDAO_0000152");
102
+ }
103
+
104
+ /**
105
+ * -- No comment or description provided. --
106
+ * (http://purl.obolibrary.org/obo/CDAO_0000153)
107
+ */
108
+ public static Resource has_Datum() {
109
+ return _namespace_CDAO("CDAO_0000153");
110
+ }
111
+
112
+ /**
113
+ * -- No comment or description provided. --
114
+ * (http://purl.obolibrary.org/obo/CDAO_0000154)
115
+ */
116
+ public static Resource has_Standard_Datum() {
117
+ return _namespace_CDAO("CDAO_0000154");
118
+ }
119
+
120
+ /**
121
+ * -- No comment or description provided. --
122
+ * (http://purl.obolibrary.org/obo/CDAO_0000155)
123
+ */
124
+ public static Resource subtree_of() {
125
+ return _namespace_CDAO("CDAO_0000155");
126
+ }
127
+
128
+ /**
129
+ * -- No comment or description provided. --
130
+ * (http://purl.obolibrary.org/obo/CDAO_0000156)
131
+ */
132
+ public static Resource has_Amino_Acid_State() {
133
+ return _namespace_CDAO("CDAO_0000156");
134
+ }
135
+
136
+ /**
137
+ * -- No comment or description provided. --
138
+ * (http://purl.obolibrary.org/obo/CDAO_0000157)
139
+ */
140
+ public static Resource is_annotation_of() {
141
+ return _namespace_CDAO("CDAO_0000157");
142
+ }
143
+
144
+ /**
145
+ * -- No comment or description provided. --
146
+ * (http://purl.obolibrary.org/obo/CDAO_0000158)
147
+ */
148
+ public static Resource has_RNA_Datum() {
149
+ return _namespace_CDAO("CDAO_0000158");
150
+ }
151
+
152
+ /**
153
+ * -- No comment or description provided. --
154
+ * (http://purl.obolibrary.org/obo/CDAO_0000159)
155
+ */
156
+ public static Resource has_Left_State() {
157
+ return _namespace_CDAO("CDAO_0000159");
158
+ }
159
+
160
+ /**
161
+ * -- No comment or description provided. --
162
+ * (http://purl.obolibrary.org/obo/CDAO_0000160)
163
+ */
164
+ public static Resource precedes() {
165
+ return _namespace_CDAO("CDAO_0000160");
166
+ }
167
+
168
+ /**
169
+ * -- No comment or description provided. --
170
+ * (http://purl.obolibrary.org/obo/CDAO_0000161)
171
+ */
172
+ public static Resource exclude() {
173
+ return _namespace_CDAO("CDAO_0000161");
174
+ }
175
+
176
+ /**
177
+ * -- No comment or description provided. --
178
+ * (http://purl.obolibrary.org/obo/CDAO_0000162)
179
+ */
180
+ public static Resource has_Node() {
181
+ return _namespace_CDAO("CDAO_0000162");
182
+ }
183
+
184
+ /**
185
+ * -- No comment or description provided. --
186
+ * (http://purl.obolibrary.org/obo/CDAO_0000163)
187
+ */
188
+ public static Resource nca_node_of() {
189
+ return _namespace_CDAO("CDAO_0000163");
190
+ }
191
+
192
+ /**
193
+ * Associates a TU to some external taxonomy reference.
194
+ * (http://purl.obolibrary.org/obo/CDAO_0000164)
195
+ */
196
+ public static Resource has_External_Reference() {
197
+ return _namespace_CDAO("CDAO_0000164");
198
+ }
199
+
200
+ /**
201
+ * -- No comment or description provided. --
202
+ * (http://purl.obolibrary.org/obo/CDAO_0000165)
203
+ */
204
+ public static Resource has_Coordinate_System() {
205
+ return _namespace_CDAO("CDAO_0000165");
206
+ }
207
+
208
+ /**
209
+ * -- No comment or description provided. --
210
+ * (http://purl.obolibrary.org/obo/CDAO_0000166)
211
+ */
212
+ public static Resource belongs_to_Nucleotide_Character() {
213
+ return _namespace_CDAO("CDAO_0000166");
214
+ }
215
+
216
+ /**
217
+ * -- No comment or description provided. --
218
+ * (http://purl.obolibrary.org/obo/CDAO_0000167)
219
+ */
220
+ public static Resource connects_to() {
221
+ return _namespace_CDAO("CDAO_0000167");
222
+ }
223
+
224
+ /**
225
+ * -- No comment or description provided. --
226
+ * (http://purl.obolibrary.org/obo/CDAO_0000168)
227
+ */
228
+ public static Resource has_Amino_Acid_Datum() {
229
+ return _namespace_CDAO("CDAO_0000168");
230
+ }
231
+
232
+ /**
233
+ * -- No comment or description provided. --
234
+ * (http://purl.obolibrary.org/obo/CDAO_0000169)
235
+ */
236
+ public static Resource hereditary_change_of() {
237
+ return _namespace_CDAO("CDAO_0000169");
238
+ }
239
+
240
+ /**
241
+ * -- No comment or description provided. --
242
+ * (http://purl.obolibrary.org/obo/CDAO_0000170)
243
+ */
244
+ public static Resource has_Compound_Datum() {
245
+ return _namespace_CDAO("CDAO_0000170");
246
+ }
247
+
248
+ /**
249
+ * -- No comment or description provided. --
250
+ * (http://purl.obolibrary.org/obo/CDAO_0000171)
251
+ */
252
+ public static Resource has_Descendants() {
253
+ return _namespace_CDAO("CDAO_0000171");
254
+ }
255
+
256
+ /**
257
+ * -- No comment or description provided. --
258
+ * (http://purl.obolibrary.org/obo/CDAO_0000172)
259
+ */
260
+ public static Resource reconciliation_of() {
261
+ return _namespace_CDAO("CDAO_0000172");
262
+ }
263
+
264
+ /**
265
+ * -- No comment or description provided. --
266
+ * (http://purl.obolibrary.org/obo/CDAO_0000173)
267
+ */
268
+ public static Resource belongs_to_Amino_Acid_Character() {
269
+ return _namespace_CDAO("CDAO_0000173");
270
+ }
271
+
272
+ /**
273
+ * -- No comment or description provided. --
274
+ * (http://purl.obolibrary.org/obo/CDAO_0000174)
275
+ */
276
+ public static Resource has_Descendant() {
277
+ return _namespace_CDAO("CDAO_0000174");
278
+ }
279
+
280
+ /**
281
+ * -- No comment or description provided. --
282
+ * (http://purl.obolibrary.org/obo/CDAO_0000175)
283
+ */
284
+ public static Resource has_Continuous_State() {
285
+ return _namespace_CDAO("CDAO_0000175");
286
+ }
287
+
288
+ /**
289
+ * -- No comment or description provided. --
290
+ * (http://purl.obolibrary.org/obo/CDAO_0000176)
291
+ */
292
+ public static Resource has_Type() {
293
+ return _namespace_CDAO("CDAO_0000176");
294
+ }
295
+
296
+ /**
297
+ * -- No comment or description provided. --
298
+ * (http://purl.obolibrary.org/obo/CDAO_0000177)
299
+ */
300
+ public static Resource belongs_to_Edge_as_Parent() {
301
+ return _namespace_CDAO("CDAO_0000177");
302
+ }
303
+
304
+ /**
305
+ * -- No comment or description provided. --
306
+ * (http://purl.obolibrary.org/obo/CDAO_0000178)
307
+ */
308
+ public static Resource has() {
309
+ return _namespace_CDAO("CDAO_0000178");
310
+ }
311
+
312
+ /**
313
+ * -- No comment or description provided. --
314
+ * (http://purl.obolibrary.org/obo/CDAO_0000179)
315
+ */
316
+ public static Resource has_Parent() {
317
+ return _namespace_CDAO("CDAO_0000179");
318
+ }
319
+
320
+ /**
321
+ * -- No comment or description provided. --
322
+ * (http://purl.obolibrary.org/obo/CDAO_0000180)
323
+ */
324
+ public static Resource belongs_to_Compound_Character() {
325
+ return _namespace_CDAO("CDAO_0000180");
326
+ }
327
+
328
+ /**
329
+ * -- No comment or description provided. --
330
+ * (http://purl.obolibrary.org/obo/CDAO_0000181)
331
+ */
332
+ public static Resource homologous_to() {
333
+ return _namespace_CDAO("CDAO_0000181");
334
+ }
335
+
336
+ /**
337
+ * -- No comment or description provided. --
338
+ * (http://purl.obolibrary.org/obo/CDAO_0000182)
339
+ */
340
+ public static Resource has_Change_Component() {
341
+ return _namespace_CDAO("CDAO_0000182");
342
+ }
343
+
344
+ /**
345
+ * -- No comment or description provided. --
346
+ * (http://purl.obolibrary.org/obo/CDAO_0000183)
347
+ */
348
+ public static Resource has_Categorical_Datum() {
349
+ return _namespace_CDAO("CDAO_0000183");
350
+ }
351
+
352
+ /**
353
+ * -- No comment or description provided. --
354
+ * (http://purl.obolibrary.org/obo/CDAO_0000184)
355
+ */
356
+ public static Resource has_State() {
357
+ return _namespace_CDAO("CDAO_0000184");
358
+ }
359
+
360
+ /**
361
+ * -- No comment or description provided. --
362
+ * (http://purl.obolibrary.org/obo/CDAO_0000185)
363
+ */
364
+ public static Resource has_Left_Node() {
365
+ return _namespace_CDAO("CDAO_0000185");
366
+ }
367
+
368
+ /**
369
+ * -- No comment or description provided. --
370
+ * (http://purl.obolibrary.org/obo/CDAO_0000186)
371
+ */
372
+ public static Resource has_Right_State() {
373
+ return _namespace_CDAO("CDAO_0000186");
374
+ }
375
+
376
+ /**
377
+ * -- No comment or description provided. --
378
+ * (http://purl.obolibrary.org/obo/CDAO_0000187)
379
+ */
380
+ public static Resource represents_TU() {
381
+ return _namespace_CDAO("CDAO_0000187");
382
+ }
383
+
384
+ /**
385
+ * -- No comment or description provided. --
386
+ * (http://purl.obolibrary.org/obo/CDAO_0000188)
387
+ */
388
+ public static Resource exclude_Node() {
389
+ return _namespace_CDAO("CDAO_0000188");
390
+ }
391
+
392
+ /**
393
+ * -- No comment or description provided. --
394
+ * (http://purl.obolibrary.org/obo/CDAO_0000189)
395
+ */
396
+ public static Resource has_Compound_State() {
397
+ return _namespace_CDAO("CDAO_0000189");
398
+ }
399
+
400
+ /**
401
+ * -- No comment or description provided. --
402
+ * (http://purl.obolibrary.org/obo/CDAO_0000190)
403
+ */
404
+ public static Resource belongs_to() {
405
+ return _namespace_CDAO("CDAO_0000190");
406
+ }
407
+
408
+ /**
409
+ * -- No comment or description provided. --
410
+ * (http://purl.obolibrary.org/obo/CDAO_0000191)
411
+ */
412
+ public static Resource belongs_to_TU() {
413
+ return _namespace_CDAO("CDAO_0000191");
414
+ }
415
+
416
+ /**
417
+ * -- No comment or description provided. --
418
+ * (http://purl.obolibrary.org/obo/CDAO_0000192)
419
+ */
420
+ public static Resource belongs_to_Network() {
421
+ return _namespace_CDAO("CDAO_0000192");
422
+ }
423
+
424
+ /**
425
+ * -- No comment or description provided. --
426
+ * (http://purl.obolibrary.org/obo/CDAO_0000193)
427
+ */
428
+ public static Resource has_Annotation() {
429
+ return _namespace_CDAO("CDAO_0000193");
430
+ }
431
+
432
+ /**
433
+ * -- No comment or description provided. --
434
+ * (http://purl.obolibrary.org/obo/CDAO_0000194)
435
+ */
436
+ public static Resource part_of() {
437
+ return _namespace_CDAO("CDAO_0000194");
438
+ }
439
+
440
+ /**
441
+ * -- No comment or description provided. --
442
+ * (http://purl.obolibrary.org/obo/CDAO_0000195)
443
+ */
444
+ public static Resource has_Nucleotide_Datum() {
445
+ return _namespace_CDAO("CDAO_0000195");
446
+ }
447
+
448
+ /**
449
+ * -- No comment or description provided. --
450
+ * (http://purl.obolibrary.org/obo/CDAO_0000196)
451
+ */
452
+ public static Resource represented_by_Node() {
453
+ return _namespace_CDAO("CDAO_0000196");
454
+ }
455
+
456
+ /**
457
+ * -- No comment or description provided. --
458
+ * (http://purl.obolibrary.org/obo/CDAO_0000197)
459
+ */
460
+ public static Resource has_Remaining_Coordinate_List() {
461
+ return _namespace_CDAO("CDAO_0000197");
462
+ }
463
+
464
+ /**
465
+ * -- No comment or description provided. --
466
+ * (http://purl.obolibrary.org/obo/CDAO_0000198)
467
+ */
468
+ public static Resource has_Element() {
469
+ return _namespace_CDAO("CDAO_0000198");
470
+ }
471
+
472
+ /**
473
+ * -- No comment or description provided. --
474
+ * (http://purl.obolibrary.org/obo/CDAO_0000199)
475
+ */
476
+ public static Resource exclude_Subtree() {
477
+ return _namespace_CDAO("CDAO_0000199");
478
+ }
479
+
480
+ /**
481
+ * -- No comment or description provided. --
482
+ * (http://purl.obolibrary.org/obo/CDAO_0000200)
483
+ */
484
+ public static Resource belongs_to_Tree() {
485
+ return _namespace_CDAO("CDAO_0000200");
486
+ }
487
+
488
+ /**
489
+ * -- No comment or description provided. --
490
+ * (http://purl.obolibrary.org/obo/CDAO_0000201)
491
+ */
492
+ public static Resource has_Parent_Node() {
493
+ return _namespace_CDAO("CDAO_0000201");
494
+ }
495
+
496
+ /**
497
+ * -- No comment or description provided. --
498
+ * (http://purl.obolibrary.org/obo/CDAO_0000202)
499
+ */
500
+ public static Resource has_Lineage_node() {
501
+ return _namespace_CDAO("CDAO_0000202");
502
+ }
503
+
504
+ /**
505
+ * -- No comment or description provided. --
506
+ * (http://purl.obolibrary.org/obo/CDAO_0000203)
507
+ */
508
+ public static Resource belongs_to_Tree_as_Root() {
509
+ return _namespace_CDAO("CDAO_0000203");
510
+ }
511
+
512
+ /**
513
+ * -- No comment or description provided. --
514
+ * (http://purl.obolibrary.org/obo/CDAO_0000204)
515
+ */
516
+ public static Resource has_Hereditary_Change() {
517
+ return _namespace_CDAO("CDAO_0000204");
518
+ }
519
+
520
+ /**
521
+ * -- No comment or description provided. --
522
+ * (http://purl.obolibrary.org/obo/CDAO_0000205)
523
+ */
524
+ public static Resource belongs_to_Character() {
525
+ return _namespace_CDAO("CDAO_0000205");
526
+ }
527
+
528
+ /**
529
+ * -- No comment or description provided. --
530
+ * (http://purl.obolibrary.org/obo/CDAO_0000206)
531
+ */
532
+ public static Resource has_Molecular_Datum() {
533
+ return _namespace_CDAO("CDAO_0000206");
534
+ }
535
+
536
+ /**
537
+ * -- No comment or description provided. --
538
+ * (http://purl.obolibrary.org/obo/CDAO_0000207)
539
+ */
540
+ public static Resource has_Continuous_Datum() {
541
+ return _namespace_CDAO("CDAO_0000207");
542
+ }
543
+
544
+ /**
545
+ * -- No comment or description provided. --
546
+ * (http://purl.obolibrary.org/obo/CDAO_0000208)
547
+ */
548
+ public static Resource has_TU() {
549
+ return _namespace_CDAO("CDAO_0000208");
550
+ }
551
+
552
+ /**
553
+ * -- No comment or description provided. --
554
+ * (http://purl.obolibrary.org/obo/CDAO_0000209)
555
+ */
556
+ public static Resource has_Child_Node() {
557
+ return _namespace_CDAO("CDAO_0000209");
558
+ }
559
+
560
+ /**
561
+ * -- No comment or description provided. --
562
+ * (http://purl.obolibrary.org/obo/CDAO_0000210)
563
+ */
564
+ public static Resource has_Right_Node() {
565
+ return _namespace_CDAO("CDAO_0000210");
566
+ }
567
+
568
+ /**
569
+ * -- No comment or description provided. --
570
+ * (http://purl.obolibrary.org/obo/CDAO_0000211)
571
+ */
572
+ public static Resource has_Precision() {
573
+ return _namespace_CDAO("CDAO_0000211");
574
+ }
575
+
576
+ /**
577
+ * -- No comment or description provided. --
578
+ * (http://purl.obolibrary.org/obo/CDAO_0000212)
579
+ */
580
+ public static Resource has_Point_Coordinate_Value() {
581
+ return _namespace_CDAO("CDAO_0000212");
582
+ }
583
+
584
+ /**
585
+ * -- No comment or description provided. --
586
+ * (http://purl.obolibrary.org/obo/CDAO_0000213)
587
+ */
588
+ public static Resource has_Int_Value() {
589
+ return _namespace_CDAO("CDAO_0000213");
590
+ }
591
+
592
+ /**
593
+ * -- No comment or description provided. --
594
+ * (http://purl.obolibrary.org/obo/CDAO_0000214)
595
+ */
596
+ public static Resource has_Support_Value() {
597
+ return _namespace_CDAO("CDAO_0000214");
598
+ }
599
+
600
+ /**
601
+ * -- No comment or description provided. --
602
+ * (http://purl.obolibrary.org/obo/CDAO_0000215)
603
+ */
604
+ public static Resource has_Value() {
605
+ return _namespace_CDAO("CDAO_0000215");
606
+ }
607
+
608
+ /**
609
+ * -- No comment or description provided. --
610
+ * (http://purl.obolibrary.org/obo/CDAO_0000216)
611
+ */
612
+ public static Resource has_Uncertainty_Factor() {
613
+ return _namespace_CDAO("CDAO_0000216");
614
+ }
615
+
616
+ /**
617
+ * -- No comment or description provided. --
618
+ * (http://purl.obolibrary.org/obo/CDAO_0000217)
619
+ */
620
+ public static Resource has_Range_End_Value() {
621
+ return _namespace_CDAO("CDAO_0000217");
622
+ }
623
+
624
+ /**
625
+ * -- No comment or description provided. --
626
+ * (http://purl.obolibrary.org/obo/CDAO_0000218)
627
+ */
628
+ public static Resource has_Float_Value() {
629
+ return _namespace_CDAO("CDAO_0000218");
630
+ }
631
+
632
+ /**
633
+ * -- No comment or description provided. --
634
+ * (http://purl.obolibrary.org/obo/CDAO_0000219)
635
+ */
636
+ public static Resource has_Range_Start_Value() {
637
+ return _namespace_CDAO("CDAO_0000219");
638
+ }
639
+
640
+ /**
641
+ * -- No comment or description provided. --
642
+ * (http://purl.obolibrary.org/obo/CDAO_0000002)
643
+ */
644
+ public static Resource DesoxiRibonucleotideResidueStateDatum() {
645
+ return _namespace_CDAO("CDAO_0000002");
646
+ }
647
+
648
+ /**
649
+ * -- No comment or description provided. --
650
+ * (http://purl.obolibrary.org/obo/CDAO_0000003)
651
+ */
652
+ public static Resource CoordinatePoint() {
653
+ return _namespace_CDAO("CDAO_0000003");
654
+ }
655
+
656
+ /**
657
+ * -- No comment or description provided. --
658
+ * (http://purl.obolibrary.org/obo/CDAO_0000004)
659
+ */
660
+ public static Resource Lineage() {
661
+ return _namespace_CDAO("CDAO_0000004");
662
+ }
663
+
664
+ /**
665
+ * -- No comment or description provided. --
666
+ * (http://purl.obolibrary.org/obo/CDAO_0000005)
667
+ */
668
+ public static Resource Phylo4Tree() {
669
+ return _namespace_CDAO("CDAO_0000005");
670
+ }
671
+
672
+ /**
673
+ * -- No comment or description provided. --
674
+ * (http://purl.obolibrary.org/obo/CDAO_0000006)
675
+ */
676
+ public static Resource Network() {
677
+ return _namespace_CDAO("CDAO_0000006");
678
+ }
679
+
680
+ /**
681
+ * This is a non-computible description of a model, not the fully specified mathematical model, which typically relates the probability of a transformation to various parameters.
682
+ * (http://purl.obolibrary.org/obo/CDAO_0000007)
683
+ */
684
+ public static Resource ModelDescription() {
685
+ return _namespace_CDAO("CDAO_0000007");
686
+ }
687
+
688
+ /**
689
+ * -- No comment or description provided. --
690
+ * (http://purl.obolibrary.org/obo/CDAO_0000008)
691
+ */
692
+ public static Resource StandardStateDatum() {
693
+ return _namespace_CDAO("CDAO_0000008");
694
+ }
695
+
696
+ /**
697
+ * -- No comment or description provided. --
698
+ * (http://purl.obolibrary.org/obo/CDAO_0000009)
699
+ */
700
+ public static Resource ContinuousCharacterLengthType() {
701
+ return _namespace_CDAO("CDAO_0000009");
702
+ }
703
+
704
+ /**
705
+ * -- No comment or description provided. --
706
+ * (http://purl.obolibrary.org/obo/CDAO_0000010)
707
+ */
708
+ public static Resource ContinuousCharBayesianLengthType() {
709
+ return _namespace_CDAO("CDAO_0000010");
710
+ }
711
+
712
+ /**
713
+ * -- No comment or description provided. --
714
+ * (http://purl.obolibrary.org/obo/CDAO_0000011)
715
+ */
716
+ public static Resource NEXUSTreeBlock() {
717
+ return _namespace_CDAO("CDAO_0000011");
718
+ }
719
+
720
+ /**
721
+ * -- No comment or description provided. --
722
+ * (http://purl.obolibrary.org/obo/CDAO_0000012)
723
+ */
724
+ public static Resource RootedTree() {
725
+ return _namespace_CDAO("CDAO_0000012");
726
+ }
727
+
728
+ /**
729
+ * -- No comment or description provided. --
730
+ * (http://purl.obolibrary.org/obo/CDAO_0000013)
731
+ */
732
+ public static Resource Kimura2Parameters() {
733
+ return _namespace_CDAO("CDAO_0000013");
734
+ }
735
+
736
+ /**
737
+ * -- No comment or description provided. --
738
+ * (http://purl.obolibrary.org/obo/CDAO_0000014)
739
+ */
740
+ public static Resource TreeProcedure() {
741
+ return _namespace_CDAO("CDAO_0000014");
742
+ }
743
+
744
+ /**
745
+ * This class should be renamed. These are not generic states but non-concrete states including gap, unknown and missing.
746
+ * (http://purl.obolibrary.org/obo/CDAO_0000015)
747
+ */
748
+ public static Resource Generic_State() {
749
+ return _namespace_CDAO("CDAO_0000015");
750
+ }
751
+
752
+ /**
753
+ * -- No comment or description provided. --
754
+ * (http://purl.obolibrary.org/obo/CDAO_0000016)
755
+ */
756
+ public static Resource UnrootedSubtree() {
757
+ return _namespace_CDAO("CDAO_0000016");
758
+ }
759
+
760
+ /**
761
+ * -- No comment or description provided. --
762
+ * (http://purl.obolibrary.org/obo/CDAO_0000017)
763
+ */
764
+ public static Resource UnresolvedTree() {
765
+ return _namespace_CDAO("CDAO_0000017");
766
+ }
767
+
768
+ /**
769
+ * -- No comment or description provided. --
770
+ * (http://purl.obolibrary.org/obo/CDAO_0000018)
771
+ */
772
+ public static Resource BifurcatingTree() {
773
+ return _namespace_CDAO("CDAO_0000018");
774
+ }
775
+
776
+ /**
777
+ * -- No comment or description provided. --
778
+ * (http://purl.obolibrary.org/obo/CDAO_0000019)
779
+ */
780
+ public static Resource ContinuousStateDatum() {
781
+ return _namespace_CDAO("CDAO_0000019");
782
+ }
783
+
784
+ /**
785
+ * -- No comment or description provided. --
786
+ * (http://purl.obolibrary.org/obo/CDAO_0000020)
787
+ */
788
+ public static Resource SubstitutionModel() {
789
+ return _namespace_CDAO("CDAO_0000020");
790
+ }
791
+
792
+ /**
793
+ * -- No comment or description provided. --
794
+ * (http://purl.obolibrary.org/obo/CDAO_0000021)
795
+ */
796
+ public static Resource JukesKantor() {
797
+ return _namespace_CDAO("CDAO_0000021");
798
+ }
799
+
800
+ /**
801
+ * drawing from seqloc categories from NCBI at http://www.ncbi.nlm.nih.gov/IEB/ToolBox/SDKDOCS/SEQLOC.HTML#_Seq-loc:_Locations_on
802
+ * (http://purl.obolibrary.org/obo/CDAO_0000022)
803
+ */
804
+ public static Resource DatumCoordinate() {
805
+ return _namespace_CDAO("CDAO_0000022");
806
+ }
807
+
808
+ /**
809
+ * -- No comment or description provided. --
810
+ * (http://purl.obolibrary.org/obo/CDAO_0000023)
811
+ */
812
+ public static Resource UnresolvedRootedTree() {
813
+ return _namespace_CDAO("CDAO_0000023");
814
+ }
815
+
816
+ /**
817
+ * -- No comment or description provided. --
818
+ * (http://purl.obolibrary.org/obo/CDAO_0000024)
819
+ */
820
+ public static Resource Branch() {
821
+ return _namespace_CDAO("CDAO_0000024");
822
+ }
823
+
824
+ /**
825
+ * -- No comment or description provided. --
826
+ * (http://purl.obolibrary.org/obo/CDAO_0000025)
827
+ */
828
+ public static Resource CharacterStateDataMatrixAnnotation() {
829
+ return _namespace_CDAO("CDAO_0000025");
830
+ }
831
+
832
+ /**
833
+ * -- No comment or description provided. --
834
+ * (http://purl.obolibrary.org/obo/CDAO_0000026)
835
+ */
836
+ public static Resource AncestralNode() {
837
+ return _namespace_CDAO("CDAO_0000026");
838
+ }
839
+
840
+ /**
841
+ * -- No comment or description provided. --
842
+ * (http://purl.obolibrary.org/obo/CDAO_0000027)
843
+ */
844
+ public static Resource UnresolvedUnrootedTree() {
845
+ return _namespace_CDAO("CDAO_0000027");
846
+ }
847
+
848
+ /**
849
+ * -- No comment or description provided. --
850
+ * (http://purl.obolibrary.org/obo/CDAO_0000029)
851
+ */
852
+ public static Resource UncertainStateDomain() {
853
+ return _namespace_CDAO("CDAO_0000029");
854
+ }
855
+
856
+ /**
857
+ * -- No comment or description provided. --
858
+ * (http://purl.obolibrary.org/obo/CDAO_0000030)
859
+ */
860
+ public static Resource ReconcileTree() {
861
+ return _namespace_CDAO("CDAO_0000030");
862
+ }
863
+
864
+ /**
865
+ * -- No comment or description provided. --
866
+ * (http://purl.obolibrary.org/obo/CDAO_0000031)
867
+ */
868
+ public static Resource Continuous() {
869
+ return _namespace_CDAO("CDAO_0000031");
870
+ }
871
+
872
+ /**
873
+ * -- No comment or description provided. --
874
+ * (http://purl.obolibrary.org/obo/CDAO_0000032)
875
+ */
876
+ public static Resource AlignmentProcedure() {
877
+ return _namespace_CDAO("CDAO_0000032");
878
+ }
879
+
880
+ /**
881
+ * -- No comment or description provided. --
882
+ * (http://purl.obolibrary.org/obo/CDAO_0000033)
883
+ */
884
+ public static Resource Dichotomy() {
885
+ return _namespace_CDAO("CDAO_0000033");
886
+ }
887
+
888
+ /**
889
+ * -- No comment or description provided. --
890
+ * (http://purl.obolibrary.org/obo/CDAO_0000034)
891
+ */
892
+ public static Resource Molecular() {
893
+ return _namespace_CDAO("CDAO_0000034");
894
+ }
895
+
896
+ /**
897
+ * -- No comment or description provided. --
898
+ * (http://purl.obolibrary.org/obo/CDAO_0000035)
899
+ */
900
+ public static Resource ContinuousCharParsimonyLengthType() {
901
+ return _namespace_CDAO("CDAO_0000035");
902
+ }
903
+
904
+ /**
905
+ * -- No comment or description provided. --
906
+ * (http://purl.obolibrary.org/obo/CDAO_0000039)
907
+ */
908
+ public static Resource Categorical() {
909
+ return _namespace_CDAO("CDAO_0000039");
910
+ }
911
+
912
+ /**
913
+ * Its possible that this base class should be discarded and that annotations should inherit from an imported base class if one exists.
914
+ * (http://purl.obolibrary.org/obo/CDAO_0000040)
915
+ */
916
+ public static Resource CDAOAnnotation() {
917
+ return _namespace_CDAO("CDAO_0000040");
918
+ }
919
+
920
+ /**
921
+ * -- No comment or description provided. --
922
+ * (http://purl.obolibrary.org/obo/CDAO_0000041)
923
+ */
924
+ public static Resource originationEvent() {
925
+ return _namespace_CDAO("CDAO_0000041");
926
+ }
927
+
928
+ /**
929
+ * -- No comment or description provided. --
930
+ * (http://purl.obolibrary.org/obo/CDAO_0000042)
931
+ */
932
+ public static Resource Polytomy() {
933
+ return _namespace_CDAO("CDAO_0000042");
934
+ }
935
+
936
+ /**
937
+ * -- No comment or description provided. --
938
+ * (http://purl.obolibrary.org/obo/CDAO_0000043)
939
+ */
940
+ public static Resource PolymorphicStateDomain() {
941
+ return _namespace_CDAO("CDAO_0000043");
942
+ }
943
+
944
+ /**
945
+ * -- No comment or description provided. --
946
+ * (http://purl.obolibrary.org/obo/CDAO_0000044)
947
+ */
948
+ public static Resource TreeAnnotation() {
949
+ return _namespace_CDAO("CDAO_0000044");
950
+ }
951
+
952
+ /**
953
+ * -- No comment or description provided. --
954
+ * (http://purl.obolibrary.org/obo/CDAO_0000045)
955
+ */
956
+ public static Resource Standard() {
957
+ return _namespace_CDAO("CDAO_0000045");
958
+ }
959
+
960
+ /**
961
+ * Its possible that this should not be classed as an "annotation" since it contains data rather than meta-data.
962
+ * (http://purl.obolibrary.org/obo/CDAO_0000046)
963
+ */
964
+ public static Resource EdgeLength() {
965
+ return _namespace_CDAO("CDAO_0000046");
966
+ }
967
+
968
+ /**
969
+ * -- No comment or description provided. --
970
+ * (http://purl.obolibrary.org/obo/CDAO_0000047)
971
+ */
972
+ public static Resource RibonucleotideResidue() {
973
+ return _namespace_CDAO("CDAO_0000047");
974
+ }
975
+
976
+ /**
977
+ * -- No comment or description provided. --
978
+ * (http://purl.obolibrary.org/obo/CDAO_0000048)
979
+ */
980
+ public static Resource Clade() {
981
+ return _namespace_CDAO("CDAO_0000048");
982
+ }
983
+
984
+ /**
985
+ * -- No comment or description provided. --
986
+ * (http://purl.obolibrary.org/obo/CDAO_0000049)
987
+ */
988
+ public static Resource DiscreteCharParsimonyLengthType() {
989
+ return _namespace_CDAO("CDAO_0000049");
990
+ }
991
+
992
+ /**
993
+ * -- No comment or description provided. --
994
+ * (http://purl.obolibrary.org/obo/CDAO_0000050)
995
+ */
996
+ public static Resource MolecularStateDatum() {
997
+ return _namespace_CDAO("CDAO_0000050");
998
+ }
999
+
1000
+ /**
1001
+ * -- No comment or description provided. --
1002
+ * (http://purl.obolibrary.org/obo/CDAO_0000051)
1003
+ */
1004
+ public static Resource PolyphyleticGroup() {
1005
+ return _namespace_CDAO("CDAO_0000051");
1006
+ }
1007
+
1008
+ /**
1009
+ * -- No comment or description provided. --
1010
+ * (http://purl.obolibrary.org/obo/CDAO_0000052)
1011
+ */
1012
+ public static Resource NexusDataBlock() {
1013
+ return _namespace_CDAO("CDAO_0000052");
1014
+ }
1015
+
1016
+ /**
1017
+ * -- No comment or description provided. --
1018
+ * (http://purl.obolibrary.org/obo/CDAO_0000053)
1019
+ */
1020
+ public static Resource BranchingNode() {
1021
+ return _namespace_CDAO("CDAO_0000053");
1022
+ }
1023
+
1024
+ /**
1025
+ * -- No comment or description provided. --
1026
+ * (http://purl.obolibrary.org/obo/CDAO_0000055)
1027
+ */
1028
+ public static Resource Compound() {
1029
+ return _namespace_CDAO("CDAO_0000055");
1030
+ }
1031
+
1032
+ /**
1033
+ * -- No comment or description provided. --
1034
+ * (http://purl.obolibrary.org/obo/CDAO_0000056)
1035
+ */
1036
+ public static Resource CharacterStateDataMatrix() {
1037
+ return _namespace_CDAO("CDAO_0000056");
1038
+ }
1039
+
1040
+ /**
1041
+ * -- No comment or description provided. --
1042
+ * (http://purl.obolibrary.org/obo/CDAO_0000057)
1043
+ */
1044
+ public static Resource RibonucleotideResidueStateDatum() {
1045
+ return _namespace_CDAO("CDAO_0000057");
1046
+ }
1047
+
1048
+ /**
1049
+ * -- No comment or description provided. --
1050
+ * (http://purl.obolibrary.org/obo/CDAO_0000058)
1051
+ */
1052
+ public static Resource TimeCalibratedLengthType() {
1053
+ return _namespace_CDAO("CDAO_0000058");
1054
+ }
1055
+
1056
+ /**
1057
+ * -- No comment or description provided. --
1058
+ * (http://purl.obolibrary.org/obo/CDAO_0000059)
1059
+ */
1060
+ public static Resource SetOfNodes() {
1061
+ return _namespace_CDAO("CDAO_0000059");
1062
+ }
1063
+
1064
+ /**
1065
+ * -- No comment or description provided. --
1066
+ * (http://purl.obolibrary.org/obo/CDAO_0000060)
1067
+ */
1068
+ public static Resource MRCANode() {
1069
+ return _namespace_CDAO("CDAO_0000060");
1070
+ }
1071
+
1072
+ /**
1073
+ * -- No comment or description provided. --
1074
+ * (http://purl.obolibrary.org/obo/CDAO_0000061)
1075
+ */
1076
+ public static Resource FASTADataMatrix() {
1077
+ return _namespace_CDAO("CDAO_0000061");
1078
+ }
1079
+
1080
+ /**
1081
+ * -- No comment or description provided. --
1082
+ * (http://purl.obolibrary.org/obo/CDAO_0000062)
1083
+ */
1084
+ public static Resource evolutionaryTransition() {
1085
+ return _namespace_CDAO("CDAO_0000062");
1086
+ }
1087
+
1088
+ /**
1089
+ * -- No comment or description provided. --
1090
+ * (http://purl.obolibrary.org/obo/CDAO_0000063)
1091
+ */
1092
+ public static Resource EdgeLengthType() {
1093
+ return _namespace_CDAO("CDAO_0000063");
1094
+ }
1095
+
1096
+ /**
1097
+ * -- No comment or description provided. --
1098
+ * (http://purl.obolibrary.org/obo/CDAO_0000064)
1099
+ */
1100
+ public static Resource cladogeneticChange() {
1101
+ return _namespace_CDAO("CDAO_0000064");
1102
+ }
1103
+
1104
+ /**
1105
+ * -- No comment or description provided. --
1106
+ * (http://purl.obolibrary.org/obo/CDAO_0000065)
1107
+ */
1108
+ public static Resource anageneticChange() {
1109
+ return _namespace_CDAO("CDAO_0000065");
1110
+ }
1111
+
1112
+ /**
1113
+ * -- No comment or description provided. --
1114
+ * (http://purl.obolibrary.org/obo/CDAO_0000066)
1115
+ */
1116
+ public static Resource TUAnnotation() {
1117
+ return _namespace_CDAO("CDAO_0000066");
1118
+ }
1119
+
1120
+ /**
1121
+ * -- No comment or description provided. --
1122
+ * (http://purl.obolibrary.org/obo/CDAO_0000067)
1123
+ */
1124
+ public static Resource PhyloTree() {
1125
+ return _namespace_CDAO("CDAO_0000067");
1126
+ }
1127
+
1128
+ /**
1129
+ * -- No comment or description provided. --
1130
+ * (http://purl.obolibrary.org/obo/CDAO_0000068)
1131
+ */
1132
+ public static Resource ContinuousCharacter() {
1133
+ return _namespace_CDAO("CDAO_0000068");
1134
+ }
1135
+
1136
+ /**
1137
+ * -- No comment or description provided. --
1138
+ * (http://purl.obolibrary.org/obo/CDAO_0000069)
1139
+ */
1140
+ public static Resource PHYLIPTree() {
1141
+ return _namespace_CDAO("CDAO_0000069");
1142
+ }
1143
+
1144
+ /**
1145
+ * -- No comment or description provided. --
1146
+ * (http://purl.obolibrary.org/obo/CDAO_0000070)
1147
+ */
1148
+ public static Resource Subtree() {
1149
+ return _namespace_CDAO("CDAO_0000070");
1150
+ }
1151
+
1152
+ /**
1153
+ * Traits shown to be relevant for phylogenetic classification
1154
+ * (http://purl.obolibrary.org/obo/CDAO_0000071)
1155
+ */
1156
+ public static Resource Character() {
1157
+ return _namespace_CDAO("CDAO_0000071");
1158
+ }
1159
+
1160
+ /**
1161
+ * -- No comment or description provided. --
1162
+ * (http://purl.obolibrary.org/obo/CDAO_0000072)
1163
+ */
1164
+ public static Resource GalledTree() {
1165
+ return _namespace_CDAO("CDAO_0000072");
1166
+ }
1167
+
1168
+ /**
1169
+ * -- No comment or description provided. --
1170
+ * (http://purl.obolibrary.org/obo/CDAO_0000073)
1171
+ */
1172
+ public static Resource SpeciesTree() {
1173
+ return _namespace_CDAO("CDAO_0000073");
1174
+ }
1175
+
1176
+ /**
1177
+ * -- No comment or description provided. --
1178
+ * (http://purl.obolibrary.org/obo/CDAO_0000074)
1179
+ */
1180
+ public static Resource TreeFormat() {
1181
+ return _namespace_CDAO("CDAO_0000074");
1182
+ }
1183
+
1184
+ /**
1185
+ * -- No comment or description provided. --
1186
+ * (http://purl.obolibrary.org/obo/CDAO_0000075)
1187
+ */
1188
+ public static Resource StandardCharacter() {
1189
+ return _namespace_CDAO("CDAO_0000075");
1190
+ }
1191
+
1192
+ /**
1193
+ * -- No comment or description provided. --
1194
+ * (http://purl.obolibrary.org/obo/CDAO_0000076)
1195
+ */
1196
+ public static Resource AminoAcidResidue() {
1197
+ return _namespace_CDAO("CDAO_0000076");
1198
+ }
1199
+
1200
+ /**
1201
+ * -- No comment or description provided. --
1202
+ * (http://purl.obolibrary.org/obo/CDAO_0000077)
1203
+ */
1204
+ public static Resource geneDuplication() {
1205
+ return _namespace_CDAO("CDAO_0000077");
1206
+ }
1207
+
1208
+ /**
1209
+ * -- No comment or description provided. --
1210
+ * (http://purl.obolibrary.org/obo/CDAO_0000078)
1211
+ */
1212
+ public static Resource CompoundCharacter() {
1213
+ return _namespace_CDAO("CDAO_0000078");
1214
+ }
1215
+
1216
+ /**
1217
+ * -- No comment or description provided. --
1218
+ * (http://purl.obolibrary.org/obo/CDAO_0000079)
1219
+ */
1220
+ public static Resource SIMMAPTree() {
1221
+ return _namespace_CDAO("CDAO_0000079");
1222
+ }
1223
+
1224
+ /**
1225
+ * -- No comment or description provided. --
1226
+ * (http://purl.obolibrary.org/obo/CDAO_0000080)
1227
+ */
1228
+ public static Resource CommonAncestralNode() {
1229
+ return _namespace_CDAO("CDAO_0000080");
1230
+ }
1231
+
1232
+ /**
1233
+ * -- No comment or description provided. --
1234
+ * (http://purl.obolibrary.org/obo/CDAO_0000081)
1235
+ */
1236
+ public static Resource NewickTree() {
1237
+ return _namespace_CDAO("CDAO_0000081");
1238
+ }
1239
+
1240
+ /**
1241
+ * -- No comment or description provided. --
1242
+ * (http://purl.obolibrary.org/obo/CDAO_0000082)
1243
+ */
1244
+ public static Resource TimeProportionalLengthType() {
1245
+ return _namespace_CDAO("CDAO_0000082");
1246
+ }
1247
+
1248
+ /**
1249
+ * -- No comment or description provided. --
1250
+ * (http://purl.obolibrary.org/obo/CDAO_0000083)
1251
+ */
1252
+ public static Resource DiscreteCharDistanceLengthType() {
1253
+ return _namespace_CDAO("CDAO_0000083");
1254
+ }
1255
+
1256
+ /**
1257
+ * -- No comment or description provided. --
1258
+ * (http://purl.obolibrary.org/obo/CDAO_0000084)
1259
+ */
1260
+ public static Resource StarTree() {
1261
+ return _namespace_CDAO("CDAO_0000084");
1262
+ }
1263
+
1264
+ /**
1265
+ * -- No comment or description provided. --
1266
+ * (http://purl.obolibrary.org/obo/CDAO_0000085)
1267
+ */
1268
+ public static Resource FullyResolvedUnrootedTree() {
1269
+ return _namespace_CDAO("CDAO_0000085");
1270
+ }
1271
+
1272
+ /**
1273
+ * -- No comment or description provided. --
1274
+ * (http://purl.obolibrary.org/obo/CDAO_0000086)
1275
+ */
1276
+ public static Resource ParaphyleticGroup() {
1277
+ return _namespace_CDAO("CDAO_0000086");
1278
+ }
1279
+
1280
+ /**
1281
+ * -- No comment or description provided. --
1282
+ * (http://purl.obolibrary.org/obo/CDAO_0000087)
1283
+ */
1284
+ public static Resource geneticEvent() {
1285
+ return _namespace_CDAO("CDAO_0000087");
1286
+ }
1287
+
1288
+ /**
1289
+ * -- No comment or description provided. --
1290
+ * (http://purl.obolibrary.org/obo/CDAO_0000088)
1291
+ */
1292
+ public static Resource UnrootedTree() {
1293
+ return _namespace_CDAO("CDAO_0000088");
1294
+ }
1295
+
1296
+ /**
1297
+ * -- No comment or description provided. --
1298
+ * (http://purl.obolibrary.org/obo/CDAO_0000089)
1299
+ */
1300
+ public static Resource CategoricalStateDatum() {
1301
+ return _namespace_CDAO("CDAO_0000089");
1302
+ }
1303
+
1304
+ /**
1305
+ * -- No comment or description provided. --
1306
+ * (http://purl.obolibrary.org/obo/CDAO_0000090)
1307
+ */
1308
+ public static Resource DiscreteCharLikelihoodLengthType() {
1309
+ return _namespace_CDAO("CDAO_0000090");
1310
+ }
1311
+
1312
+ /**
1313
+ * -- No comment or description provided. --
1314
+ * (http://purl.obolibrary.org/obo/CDAO_0000091)
1315
+ */
1316
+ public static Resource CharacterStateDomain() {
1317
+ return _namespace_CDAO("CDAO_0000091");
1318
+ }
1319
+
1320
+ /**
1321
+ * -- No comment or description provided. --
1322
+ * (http://purl.obolibrary.org/obo/CDAO_0000092)
1323
+ */
1324
+ public static Resource CoordinateList() {
1325
+ return _namespace_CDAO("CDAO_0000092");
1326
+ }
1327
+
1328
+ /**
1329
+ * -- No comment or description provided. --
1330
+ * (http://purl.obolibrary.org/obo/CDAO_0000093)
1331
+ */
1332
+ public static Resource GammaDistribution() {
1333
+ return _namespace_CDAO("CDAO_0000093");
1334
+ }
1335
+
1336
+ /**
1337
+ * -- No comment or description provided. --
1338
+ * (http://purl.obolibrary.org/obo/CDAO_0000094)
1339
+ */
1340
+ public static Resource DesoxiRibonucleotideResidueCharacter() {
1341
+ return _namespace_CDAO("CDAO_0000094");
1342
+ }
1343
+
1344
+ /**
1345
+ * -- No comment or description provided. --
1346
+ * (http://purl.obolibrary.org/obo/CDAO_0000095)
1347
+ */
1348
+ public static Resource CoordinateRange() {
1349
+ return _namespace_CDAO("CDAO_0000095");
1350
+ }
1351
+
1352
+ /**
1353
+ * -- No comment or description provided. --
1354
+ * (http://purl.obolibrary.org/obo/CDAO_0000096)
1355
+ */
1356
+ public static Resource ReticulateEvolution() {
1357
+ return _namespace_CDAO("CDAO_0000096");
1358
+ }
1359
+
1360
+ /**
1361
+ * -- No comment or description provided. --
1362
+ * (http://purl.obolibrary.org/obo/CDAO_0000097)
1363
+ */
1364
+ public static Resource hereditaryChange() {
1365
+ return _namespace_CDAO("CDAO_0000097");
1366
+ }
1367
+
1368
+ /**
1369
+ * -- No comment or description provided. --
1370
+ * (http://purl.obolibrary.org/obo/CDAO_0000098)
1371
+ */
1372
+ public static Resource CharacterStateDatum() {
1373
+ return _namespace_CDAO("CDAO_0000098");
1374
+ }
1375
+
1376
+ /**
1377
+ * -- No comment or description provided. --
1378
+ * (http://purl.obolibrary.org/obo/CDAO_0000099)
1379
+ */
1380
+ public static Resource Edge() {
1381
+ return _namespace_CDAO("CDAO_0000099");
1382
+ }
1383
+
1384
+ /**
1385
+ * -- No comment or description provided. --
1386
+ * (http://purl.obolibrary.org/obo/CDAO_0000100)
1387
+ */
1388
+ public static Resource DiscreteCharacterLengthType() {
1389
+ return _namespace_CDAO("CDAO_0000100");
1390
+ }
1391
+
1392
+ /**
1393
+ * -- No comment or description provided. --
1394
+ * (http://purl.obolibrary.org/obo/CDAO_0000101)
1395
+ */
1396
+ public static Resource EdgeAnnotation() {
1397
+ return _namespace_CDAO("CDAO_0000101");
1398
+ }
1399
+
1400
+ /**
1401
+ * -- No comment or description provided. --
1402
+ * (http://purl.obolibrary.org/obo/CDAO_0000102)
1403
+ */
1404
+ public static Resource FullyResolvedRootedTree() {
1405
+ return _namespace_CDAO("CDAO_0000102");
1406
+ }
1407
+
1408
+ /**
1409
+ * -- No comment or description provided. --
1410
+ * (http://purl.obolibrary.org/obo/CDAO_0000103)
1411
+ */
1412
+ public static Resource GrafenLengthType() {
1413
+ return _namespace_CDAO("CDAO_0000103");
1414
+ }
1415
+
1416
+ /**
1417
+ * -- No comment or description provided. --
1418
+ * (http://purl.obolibrary.org/obo/CDAO_0000104)
1419
+ */
1420
+ public static Resource CoordinateSystem() {
1421
+ return _namespace_CDAO("CDAO_0000104");
1422
+ }
1423
+
1424
+ /**
1425
+ * -- No comment or description provided. --
1426
+ * (http://purl.obolibrary.org/obo/CDAO_0000105)
1427
+ */
1428
+ public static Resource GenBankDataMatrix() {
1429
+ return _namespace_CDAO("CDAO_0000105");
1430
+ }
1431
+
1432
+ /**
1433
+ * -- No comment or description provided. --
1434
+ * (http://purl.obolibrary.org/obo/CDAO_0000107)
1435
+ */
1436
+ public static Resource DataMatrixFormat() {
1437
+ return _namespace_CDAO("CDAO_0000107");
1438
+ }
1439
+
1440
+ /**
1441
+ * -- No comment or description provided. --
1442
+ * (http://purl.obolibrary.org/obo/CDAO_0000108)
1443
+ */
1444
+ public static Resource TerminalNode() {
1445
+ return _namespace_CDAO("CDAO_0000108");
1446
+ }
1447
+
1448
+ /**
1449
+ * -- No comment or description provided. --
1450
+ * (http://purl.obolibrary.org/obo/CDAO_0000109)
1451
+ */
1452
+ public static Resource RibonucleotideResidueCharacter() {
1453
+ return _namespace_CDAO("CDAO_0000109");
1454
+ }
1455
+
1456
+ /**
1457
+ * -- No comment or description provided. --
1458
+ * (http://purl.obolibrary.org/obo/CDAO_0000110)
1459
+ */
1460
+ public static Resource Tree() {
1461
+ return _namespace_CDAO("CDAO_0000110");
1462
+ }
1463
+
1464
+ /**
1465
+ * -- No comment or description provided. --
1466
+ * (http://purl.obolibrary.org/obo/CDAO_0000111)
1467
+ */
1468
+ public static Resource CategoricalCharacter() {
1469
+ return _namespace_CDAO("CDAO_0000111");
1470
+ }
1471
+
1472
+ /**
1473
+ * -- No comment or description provided. --
1474
+ * (http://purl.obolibrary.org/obo/CDAO_0000112)
1475
+ */
1476
+ public static Resource AminoAcidResidueStateDatum() {
1477
+ return _namespace_CDAO("CDAO_0000112");
1478
+ }
1479
+
1480
+ /**
1481
+ * -- No comment or description provided. --
1482
+ * (http://purl.obolibrary.org/obo/CDAO_0000113)
1483
+ */
1484
+ public static Resource PHYLIPDataMatrix() {
1485
+ return _namespace_CDAO("CDAO_0000113");
1486
+ }
1487
+
1488
+ /**
1489
+ * -- No comment or description provided. --
1490
+ * (http://purl.obolibrary.org/obo/CDAO_0000114)
1491
+ */
1492
+ public static Resource ContinuousCharLikelihoodLengthType() {
1493
+ return _namespace_CDAO("CDAO_0000114");
1494
+ }
1495
+
1496
+ /**
1497
+ * -- No comment or description provided. --
1498
+ * (http://purl.obolibrary.org/obo/CDAO_0000115)
1499
+ */
1500
+ public static Resource MolecularCharacter() {
1501
+ return _namespace_CDAO("CDAO_0000115");
1502
+ }
1503
+
1504
+ /**
1505
+ * -- No comment or description provided. --
1506
+ * (http://purl.obolibrary.org/obo/CDAO_0000116)
1507
+ */
1508
+ public static Resource hereditaryPersistance() {
1509
+ return _namespace_CDAO("CDAO_0000116");
1510
+ }
1511
+
1512
+ /**
1513
+ * -- No comment or description provided. --
1514
+ * (http://purl.obolibrary.org/obo/CDAO_0000117)
1515
+ */
1516
+ public static Resource SetOfCharacters() {
1517
+ return _namespace_CDAO("CDAO_0000117");
1518
+ }
1519
+
1520
+ /**
1521
+ * -- No comment or description provided. --
1522
+ * (http://purl.obolibrary.org/obo/CDAO_0000118)
1523
+ */
1524
+ public static Resource SetOfThings() {
1525
+ return _namespace_CDAO("CDAO_0000118");
1526
+ }
1527
+
1528
+ /**
1529
+ * -- No comment or description provided. --
1530
+ * (http://purl.obolibrary.org/obo/CDAO_0000120)
1531
+ */
1532
+ public static Resource Sequence() {
1533
+ return _namespace_CDAO("CDAO_0000120");
1534
+ }
1535
+
1536
+ /**
1537
+ * -- No comment or description provided. --
1538
+ * (http://purl.obolibrary.org/obo/CDAO_0000121)
1539
+ */
1540
+ public static Resource speciation() {
1541
+ return _namespace_CDAO("CDAO_0000121");
1542
+ }
1543
+
1544
+ /**
1545
+ * -- No comment or description provided. --
1546
+ * (http://purl.obolibrary.org/obo/CDAO_0000122)
1547
+ */
1548
+ public static Resource cladogenesis() {
1549
+ return _namespace_CDAO("CDAO_0000122");
1550
+ }
1551
+
1552
+ /**
1553
+ * -- No comment or description provided. --
1554
+ * (http://purl.obolibrary.org/obo/CDAO_0000124)
1555
+ */
1556
+ public static Resource Bifurcation() {
1557
+ return _namespace_CDAO("CDAO_0000124");
1558
+ }
1559
+
1560
+ /**
1561
+ * -- No comment or description provided. --
1562
+ * (http://purl.obolibrary.org/obo/CDAO_0000125)
1563
+ */
1564
+ public static Resource DiscreteCharBayesianLengthType() {
1565
+ return _namespace_CDAO("CDAO_0000125");
1566
+ }
1567
+
1568
+ /**
1569
+ * -- No comment or description provided. --
1570
+ * (http://purl.obolibrary.org/obo/CDAO_0000126)
1571
+ */
1572
+ public static Resource TaxonomicLink() {
1573
+ return _namespace_CDAO("CDAO_0000126");
1574
+ }
1575
+
1576
+ /**
1577
+ * -- No comment or description provided. --
1578
+ * (http://purl.obolibrary.org/obo/CDAO_0000127)
1579
+ */
1580
+ public static Resource MonophyleticGroup() {
1581
+ return _namespace_CDAO("CDAO_0000127");
1582
+ }
1583
+
1584
+ /**
1585
+ * -- No comment or description provided. --
1586
+ * (http://purl.obolibrary.org/obo/CDAO_0000128)
1587
+ */
1588
+ public static Resource molecularRecombination() {
1589
+ return _namespace_CDAO("CDAO_0000128");
1590
+ }
1591
+
1592
+ /**
1593
+ * -- No comment or description provided. --
1594
+ * (http://purl.obolibrary.org/obo/CDAO_0000129)
1595
+ */
1596
+ public static Resource HolophyleticGroup() {
1597
+ return _namespace_CDAO("CDAO_0000129");
1598
+ }
1599
+
1600
+ /**
1601
+ * -- No comment or description provided. --
1602
+ * (http://purl.obolibrary.org/obo/CDAO_0000130)
1603
+ */
1604
+ public static Resource FullyResolvedTree() {
1605
+ return _namespace_CDAO("CDAO_0000130");
1606
+ }
1607
+
1608
+ /**
1609
+ * -- No comment or description provided. --
1610
+ * (http://purl.obolibrary.org/obo/CDAO_0000131)
1611
+ */
1612
+ public static Resource AminoAcidResidueCharacter() {
1613
+ return _namespace_CDAO("CDAO_0000131");
1614
+ }
1615
+
1616
+ /**
1617
+ * -- No comment or description provided. --
1618
+ * (http://purl.obolibrary.org/obo/CDAO_0000132)
1619
+ */
1620
+ public static Resource recombination() {
1621
+ return _namespace_CDAO("CDAO_0000132");
1622
+ }
1623
+
1624
+ /**
1625
+ * -- No comment or description provided. --
1626
+ * (http://purl.obolibrary.org/obo/CDAO_0000133)
1627
+ */
1628
+ public static Resource DesoxiRibonucleotideResidue() {
1629
+ return _namespace_CDAO("CDAO_0000133");
1630
+ }
1631
+
1632
+ /**
1633
+ * -- No comment or description provided. --
1634
+ * (http://purl.obolibrary.org/obo/CDAO_0000134)
1635
+ */
1636
+ public static Resource RootedSubtree() {
1637
+ return _namespace_CDAO("CDAO_0000134");
1638
+ }
1639
+
1640
+ /**
1641
+ * -- No comment or description provided. --
1642
+ * (http://purl.obolibrary.org/obo/CDAO_0000136)
1643
+ */
1644
+ public static Resource CompoundStateDatum() {
1645
+ return _namespace_CDAO("CDAO_0000136");
1646
+ }
1647
+
1648
+ /**
1649
+ * -- No comment or description provided. --
1650
+ * (http://purl.obolibrary.org/obo/CDAO_0000137)
1651
+ */
1652
+ public static Resource GapCost() {
1653
+ return _namespace_CDAO("CDAO_0000137");
1654
+ }
1655
+
1656
+ /**
1657
+ * -- No comment or description provided. --
1658
+ * (http://purl.obolibrary.org/obo/CDAO_0000138)
1659
+ */
1660
+ public static Resource TU() {
1661
+ return _namespace_CDAO("CDAO_0000138");
1662
+ }
1663
+
1664
+ /**
1665
+ * -- No comment or description provided. --
1666
+ * (http://purl.obolibrary.org/obo/CDAO_0000139)
1667
+ */
1668
+ public static Resource DirectedEdge() {
1669
+ return _namespace_CDAO("CDAO_0000139");
1670
+ }
1671
+
1672
+ /**
1673
+ * -- No comment or description provided. --
1674
+ * (http://purl.obolibrary.org/obo/CDAO_0000140)
1675
+ */
1676
+ public static Resource Node() {
1677
+ return _namespace_CDAO("CDAO_0000140");
1678
+ }
1679
+
1680
+ /**
1681
+ * -- No comment or description provided. --
1682
+ * (http://purl.obolibrary.org/obo/CDAO_0000141)
1683
+ */
1684
+ public static Resource ContinuousCharDistanceLengthType() {
1685
+ return _namespace_CDAO("CDAO_0000141");
1686
+ }
1687
+
1688
+ /**
1689
+ * -- No comment or description provided. --
1690
+ * (http://purl.obolibrary.org/obo/CDAO_0000220)
1691
+ */
1692
+ public static Resource dA() {
1693
+ return _namespace_CDAO("CDAO_0000220");
1694
+ }
1695
+
1696
+ /**
1697
+ * -- No comment or description provided. --
1698
+ * (http://purl.obolibrary.org/obo/CDAO_0000221)
1699
+ */
1700
+ public static Resource absent() {
1701
+ return _namespace_CDAO("CDAO_0000221");
1702
+ }
1703
+
1704
+ /**
1705
+ * -- No comment or description provided. --
1706
+ * (http://purl.obolibrary.org/obo/CDAO_0000222)
1707
+ */
1708
+ public static Resource unknown() {
1709
+ return _namespace_CDAO("CDAO_0000222");
1710
+ }
1711
+
1712
+ /**
1713
+ * -- No comment or description provided. --
1714
+ * (http://purl.obolibrary.org/obo/CDAO_0000223)
1715
+ */
1716
+ public static Resource gap() {
1717
+ return _namespace_CDAO("CDAO_0000223");
1718
+ }
1719
+
1720
+ /**
1721
+ * -- No comment or description provided. --
1722
+ * (http://purl.obolibrary.org/obo/CDAO_0000224)
1723
+ */
1724
+ public static Resource dG() {
1725
+ return _namespace_CDAO("CDAO_0000224");
1726
+ }
1727
+
1728
+ /**
1729
+ * -- No comment or description provided. --
1730
+ * (http://purl.obolibrary.org/obo/CDAO_0000225)
1731
+ */
1732
+ public static Resource rU() {
1733
+ return _namespace_CDAO("CDAO_0000225");
1734
+ }
1735
+
1736
+ /**
1737
+ * -- No comment or description provided. --
1738
+ * (http://purl.obolibrary.org/obo/CDAO_0000226)
1739
+ */
1740
+ public static Resource dC() {
1741
+ return _namespace_CDAO("CDAO_0000226");
1742
+ }
1743
+
1744
+ /**
1745
+ * -- No comment or description provided. --
1746
+ * (http://purl.obolibrary.org/obo/CDAO_0000227)
1747
+ */
1748
+ public static Resource dT() {
1749
+ return _namespace_CDAO("CDAO_0000227");
1750
+ }
1751
+
1752
+ /**
1753
+ * Determines whether the given URI is an object property.
1754
+ *
1755
+ * @param uri URI that is tested for being an object property
1756
+ */
1757
+ public static boolean isObjectProperty(Resource uri) {
1758
+ if (uri.equals(_namespace_CDAO("CDAO_0000142"))) {
1759
+ return true;
1760
+ }
1761
+ if (uri.equals(_namespace_CDAO("CDAO_0000143"))) {
1762
+ return true;
1763
+ }
1764
+ if (uri.equals(_namespace_CDAO("CDAO_0000144"))) {
1765
+ return true;
1766
+ }
1767
+ if (uri.equals(_namespace_CDAO("CDAO_0000145"))) {
1768
+ return true;
1769
+ }
1770
+ if (uri.equals(_namespace_CDAO("CDAO_0000146"))) {
1771
+ return true;
1772
+ }
1773
+ if (uri.equals(_namespace_CDAO("CDAO_0000147"))) {
1774
+ return true;
1775
+ }
1776
+ if (uri.equals(_namespace_CDAO("CDAO_0000148"))) {
1777
+ return true;
1778
+ }
1779
+ if (uri.equals(_namespace_CDAO("CDAO_0000149"))) {
1780
+ return true;
1781
+ }
1782
+ if (uri.equals(_namespace_CDAO("CDAO_0000150"))) {
1783
+ return true;
1784
+ }
1785
+ if (uri.equals(_namespace_CDAO("CDAO_0000151"))) {
1786
+ return true;
1787
+ }
1788
+ if (uri.equals(_namespace_CDAO("CDAO_0000152"))) {
1789
+ return true;
1790
+ }
1791
+ if (uri.equals(_namespace_CDAO("CDAO_0000153"))) {
1792
+ return true;
1793
+ }
1794
+ if (uri.equals(_namespace_CDAO("CDAO_0000154"))) {
1795
+ return true;
1796
+ }
1797
+ if (uri.equals(_namespace_CDAO("CDAO_0000155"))) {
1798
+ return true;
1799
+ }
1800
+ if (uri.equals(_namespace_CDAO("CDAO_0000156"))) {
1801
+ return true;
1802
+ }
1803
+ if (uri.equals(_namespace_CDAO("CDAO_0000157"))) {
1804
+ return true;
1805
+ }
1806
+ if (uri.equals(_namespace_CDAO("CDAO_0000158"))) {
1807
+ return true;
1808
+ }
1809
+ if (uri.equals(_namespace_CDAO("CDAO_0000159"))) {
1810
+ return true;
1811
+ }
1812
+ if (uri.equals(_namespace_CDAO("CDAO_0000160"))) {
1813
+ return true;
1814
+ }
1815
+ if (uri.equals(_namespace_CDAO("CDAO_0000161"))) {
1816
+ return true;
1817
+ }
1818
+ if (uri.equals(_namespace_CDAO("CDAO_0000162"))) {
1819
+ return true;
1820
+ }
1821
+ if (uri.equals(_namespace_CDAO("CDAO_0000163"))) {
1822
+ return true;
1823
+ }
1824
+ if (uri.equals(_namespace_CDAO("CDAO_0000164"))) {
1825
+ return true;
1826
+ }
1827
+ if (uri.equals(_namespace_CDAO("CDAO_0000165"))) {
1828
+ return true;
1829
+ }
1830
+ if (uri.equals(_namespace_CDAO("CDAO_0000166"))) {
1831
+ return true;
1832
+ }
1833
+ if (uri.equals(_namespace_CDAO("CDAO_0000167"))) {
1834
+ return true;
1835
+ }
1836
+ if (uri.equals(_namespace_CDAO("CDAO_0000168"))) {
1837
+ return true;
1838
+ }
1839
+ if (uri.equals(_namespace_CDAO("CDAO_0000169"))) {
1840
+ return true;
1841
+ }
1842
+ if (uri.equals(_namespace_CDAO("CDAO_0000170"))) {
1843
+ return true;
1844
+ }
1845
+ if (uri.equals(_namespace_CDAO("CDAO_0000171"))) {
1846
+ return true;
1847
+ }
1848
+ if (uri.equals(_namespace_CDAO("CDAO_0000172"))) {
1849
+ return true;
1850
+ }
1851
+ if (uri.equals(_namespace_CDAO("CDAO_0000173"))) {
1852
+ return true;
1853
+ }
1854
+ if (uri.equals(_namespace_CDAO("CDAO_0000174"))) {
1855
+ return true;
1856
+ }
1857
+ if (uri.equals(_namespace_CDAO("CDAO_0000175"))) {
1858
+ return true;
1859
+ }
1860
+ if (uri.equals(_namespace_CDAO("CDAO_0000176"))) {
1861
+ return true;
1862
+ }
1863
+ if (uri.equals(_namespace_CDAO("CDAO_0000177"))) {
1864
+ return true;
1865
+ }
1866
+ if (uri.equals(_namespace_CDAO("CDAO_0000178"))) {
1867
+ return true;
1868
+ }
1869
+ if (uri.equals(_namespace_CDAO("CDAO_0000179"))) {
1870
+ return true;
1871
+ }
1872
+ if (uri.equals(_namespace_CDAO("CDAO_0000180"))) {
1873
+ return true;
1874
+ }
1875
+ if (uri.equals(_namespace_CDAO("CDAO_0000181"))) {
1876
+ return true;
1877
+ }
1878
+ if (uri.equals(_namespace_CDAO("CDAO_0000182"))) {
1879
+ return true;
1880
+ }
1881
+ if (uri.equals(_namespace_CDAO("CDAO_0000183"))) {
1882
+ return true;
1883
+ }
1884
+ if (uri.equals(_namespace_CDAO("CDAO_0000184"))) {
1885
+ return true;
1886
+ }
1887
+ if (uri.equals(_namespace_CDAO("CDAO_0000185"))) {
1888
+ return true;
1889
+ }
1890
+ if (uri.equals(_namespace_CDAO("CDAO_0000186"))) {
1891
+ return true;
1892
+ }
1893
+ if (uri.equals(_namespace_CDAO("CDAO_0000187"))) {
1894
+ return true;
1895
+ }
1896
+ if (uri.equals(_namespace_CDAO("CDAO_0000188"))) {
1897
+ return true;
1898
+ }
1899
+ if (uri.equals(_namespace_CDAO("CDAO_0000189"))) {
1900
+ return true;
1901
+ }
1902
+ if (uri.equals(_namespace_CDAO("CDAO_0000190"))) {
1903
+ return true;
1904
+ }
1905
+ if (uri.equals(_namespace_CDAO("CDAO_0000191"))) {
1906
+ return true;
1907
+ }
1908
+ if (uri.equals(_namespace_CDAO("CDAO_0000192"))) {
1909
+ return true;
1910
+ }
1911
+ if (uri.equals(_namespace_CDAO("CDAO_0000193"))) {
1912
+ return true;
1913
+ }
1914
+ if (uri.equals(_namespace_CDAO("CDAO_0000194"))) {
1915
+ return true;
1916
+ }
1917
+ if (uri.equals(_namespace_CDAO("CDAO_0000195"))) {
1918
+ return true;
1919
+ }
1920
+ if (uri.equals(_namespace_CDAO("CDAO_0000196"))) {
1921
+ return true;
1922
+ }
1923
+ if (uri.equals(_namespace_CDAO("CDAO_0000197"))) {
1924
+ return true;
1925
+ }
1926
+ if (uri.equals(_namespace_CDAO("CDAO_0000198"))) {
1927
+ return true;
1928
+ }
1929
+ if (uri.equals(_namespace_CDAO("CDAO_0000199"))) {
1930
+ return true;
1931
+ }
1932
+ if (uri.equals(_namespace_CDAO("CDAO_0000200"))) {
1933
+ return true;
1934
+ }
1935
+ if (uri.equals(_namespace_CDAO("CDAO_0000201"))) {
1936
+ return true;
1937
+ }
1938
+ if (uri.equals(_namespace_CDAO("CDAO_0000202"))) {
1939
+ return true;
1940
+ }
1941
+ if (uri.equals(_namespace_CDAO("CDAO_0000203"))) {
1942
+ return true;
1943
+ }
1944
+ if (uri.equals(_namespace_CDAO("CDAO_0000204"))) {
1945
+ return true;
1946
+ }
1947
+ if (uri.equals(_namespace_CDAO("CDAO_0000205"))) {
1948
+ return true;
1949
+ }
1950
+ if (uri.equals(_namespace_CDAO("CDAO_0000206"))) {
1951
+ return true;
1952
+ }
1953
+ if (uri.equals(_namespace_CDAO("CDAO_0000207"))) {
1954
+ return true;
1955
+ }
1956
+ if (uri.equals(_namespace_CDAO("CDAO_0000208"))) {
1957
+ return true;
1958
+ }
1959
+ if (uri.equals(_namespace_CDAO("CDAO_0000209"))) {
1960
+ return true;
1961
+ }
1962
+ if (uri.equals(_namespace_CDAO("CDAO_0000210"))) {
1963
+ return true;
1964
+ }
1965
+ return false;
1966
+ }
1967
+
1968
+ /**
1969
+ * Determines whether the given URI is a datatype property.
1970
+ *
1971
+ * @param uri URI that is tested for being a datatype property
1972
+ */
1973
+ public static boolean isDatatypeProperty(Resource uri) {
1974
+ if (uri.equals(_namespace_CDAO("CDAO_0000211"))) {
1975
+ return true;
1976
+ }
1977
+ if (uri.equals(_namespace_CDAO("CDAO_0000212"))) {
1978
+ return true;
1979
+ }
1980
+ if (uri.equals(_namespace_CDAO("CDAO_0000213"))) {
1981
+ return true;
1982
+ }
1983
+ if (uri.equals(_namespace_CDAO("CDAO_0000214"))) {
1984
+ return true;
1985
+ }
1986
+ if (uri.equals(_namespace_CDAO("CDAO_0000215"))) {
1987
+ return true;
1988
+ }
1989
+ if (uri.equals(_namespace_CDAO("CDAO_0000216"))) {
1990
+ return true;
1991
+ }
1992
+ if (uri.equals(_namespace_CDAO("CDAO_0000217"))) {
1993
+ return true;
1994
+ }
1995
+ if (uri.equals(_namespace_CDAO("CDAO_0000218"))) {
1996
+ return true;
1997
+ }
1998
+ if (uri.equals(_namespace_CDAO("CDAO_0000219"))) {
1999
+ return true;
2000
+ }
2001
+ return false;
2002
+ }
2003
+
2004
+ /**
2005
+ * Determines whether the given URI is a class.
2006
+ *
2007
+ * @param uri URI that is tested for being a class
2008
+ */
2009
+ public static boolean isClass(Resource uri) {
2010
+ if (uri.equals(_namespace_CDAO("CDAO_0000002"))) {
2011
+ return true;
2012
+ }
2013
+ if (uri.equals(_namespace_CDAO("CDAO_0000003"))) {
2014
+ return true;
2015
+ }
2016
+ if (uri.equals(_namespace_CDAO("CDAO_0000004"))) {
2017
+ return true;
2018
+ }
2019
+ if (uri.equals(_namespace_CDAO("CDAO_0000005"))) {
2020
+ return true;
2021
+ }
2022
+ if (uri.equals(_namespace_CDAO("CDAO_0000006"))) {
2023
+ return true;
2024
+ }
2025
+ if (uri.equals(_namespace_CDAO("CDAO_0000007"))) {
2026
+ return true;
2027
+ }
2028
+ if (uri.equals(_namespace_CDAO("CDAO_0000008"))) {
2029
+ return true;
2030
+ }
2031
+ if (uri.equals(_namespace_CDAO("CDAO_0000009"))) {
2032
+ return true;
2033
+ }
2034
+ if (uri.equals(_namespace_CDAO("CDAO_0000010"))) {
2035
+ return true;
2036
+ }
2037
+ if (uri.equals(_namespace_CDAO("CDAO_0000011"))) {
2038
+ return true;
2039
+ }
2040
+ if (uri.equals(_namespace_CDAO("CDAO_0000012"))) {
2041
+ return true;
2042
+ }
2043
+ if (uri.equals(_namespace_CDAO("CDAO_0000013"))) {
2044
+ return true;
2045
+ }
2046
+ if (uri.equals(_namespace_CDAO("CDAO_0000014"))) {
2047
+ return true;
2048
+ }
2049
+ if (uri.equals(_namespace_CDAO("CDAO_0000015"))) {
2050
+ return true;
2051
+ }
2052
+ if (uri.equals(_namespace_CDAO("CDAO_0000016"))) {
2053
+ return true;
2054
+ }
2055
+ if (uri.equals(_namespace_CDAO("CDAO_0000017"))) {
2056
+ return true;
2057
+ }
2058
+ if (uri.equals(_namespace_CDAO("CDAO_0000018"))) {
2059
+ return true;
2060
+ }
2061
+ if (uri.equals(_namespace_CDAO("CDAO_0000019"))) {
2062
+ return true;
2063
+ }
2064
+ if (uri.equals(_namespace_CDAO("CDAO_0000020"))) {
2065
+ return true;
2066
+ }
2067
+ if (uri.equals(_namespace_CDAO("CDAO_0000021"))) {
2068
+ return true;
2069
+ }
2070
+ if (uri.equals(_namespace_CDAO("CDAO_0000022"))) {
2071
+ return true;
2072
+ }
2073
+ if (uri.equals(_namespace_CDAO("CDAO_0000023"))) {
2074
+ return true;
2075
+ }
2076
+ if (uri.equals(_namespace_CDAO("CDAO_0000024"))) {
2077
+ return true;
2078
+ }
2079
+ if (uri.equals(_namespace_CDAO("CDAO_0000025"))) {
2080
+ return true;
2081
+ }
2082
+ if (uri.equals(_namespace_CDAO("CDAO_0000026"))) {
2083
+ return true;
2084
+ }
2085
+ if (uri.equals(_namespace_CDAO("CDAO_0000027"))) {
2086
+ return true;
2087
+ }
2088
+ if (uri.equals(_namespace_CDAO("CDAO_0000029"))) {
2089
+ return true;
2090
+ }
2091
+ if (uri.equals(_namespace_CDAO("CDAO_0000030"))) {
2092
+ return true;
2093
+ }
2094
+ if (uri.equals(_namespace_CDAO("CDAO_0000031"))) {
2095
+ return true;
2096
+ }
2097
+ if (uri.equals(_namespace_CDAO("CDAO_0000032"))) {
2098
+ return true;
2099
+ }
2100
+ if (uri.equals(_namespace_CDAO("CDAO_0000033"))) {
2101
+ return true;
2102
+ }
2103
+ if (uri.equals(_namespace_CDAO("CDAO_0000034"))) {
2104
+ return true;
2105
+ }
2106
+ if (uri.equals(_namespace_CDAO("CDAO_0000035"))) {
2107
+ return true;
2108
+ }
2109
+ if (uri.equals(_namespace_CDAO("CDAO_0000039"))) {
2110
+ return true;
2111
+ }
2112
+ if (uri.equals(_namespace_CDAO("CDAO_0000040"))) {
2113
+ return true;
2114
+ }
2115
+ if (uri.equals(_namespace_CDAO("CDAO_0000041"))) {
2116
+ return true;
2117
+ }
2118
+ if (uri.equals(_namespace_CDAO("CDAO_0000042"))) {
2119
+ return true;
2120
+ }
2121
+ if (uri.equals(_namespace_CDAO("CDAO_0000043"))) {
2122
+ return true;
2123
+ }
2124
+ if (uri.equals(_namespace_CDAO("CDAO_0000044"))) {
2125
+ return true;
2126
+ }
2127
+ if (uri.equals(_namespace_CDAO("CDAO_0000045"))) {
2128
+ return true;
2129
+ }
2130
+ if (uri.equals(_namespace_CDAO("CDAO_0000046"))) {
2131
+ return true;
2132
+ }
2133
+ if (uri.equals(_namespace_CDAO("CDAO_0000047"))) {
2134
+ return true;
2135
+ }
2136
+ if (uri.equals(_namespace_CDAO("CDAO_0000048"))) {
2137
+ return true;
2138
+ }
2139
+ if (uri.equals(_namespace_CDAO("CDAO_0000049"))) {
2140
+ return true;
2141
+ }
2142
+ if (uri.equals(_namespace_CDAO("CDAO_0000050"))) {
2143
+ return true;
2144
+ }
2145
+ if (uri.equals(_namespace_CDAO("CDAO_0000051"))) {
2146
+ return true;
2147
+ }
2148
+ if (uri.equals(_namespace_CDAO("CDAO_0000052"))) {
2149
+ return true;
2150
+ }
2151
+ if (uri.equals(_namespace_CDAO("CDAO_0000053"))) {
2152
+ return true;
2153
+ }
2154
+ if (uri.equals(_namespace_CDAO("CDAO_0000055"))) {
2155
+ return true;
2156
+ }
2157
+ if (uri.equals(_namespace_CDAO("CDAO_0000056"))) {
2158
+ return true;
2159
+ }
2160
+ if (uri.equals(_namespace_CDAO("CDAO_0000057"))) {
2161
+ return true;
2162
+ }
2163
+ if (uri.equals(_namespace_CDAO("CDAO_0000058"))) {
2164
+ return true;
2165
+ }
2166
+ if (uri.equals(_namespace_CDAO("CDAO_0000059"))) {
2167
+ return true;
2168
+ }
2169
+ if (uri.equals(_namespace_CDAO("CDAO_0000060"))) {
2170
+ return true;
2171
+ }
2172
+ if (uri.equals(_namespace_CDAO("CDAO_0000061"))) {
2173
+ return true;
2174
+ }
2175
+ if (uri.equals(_namespace_CDAO("CDAO_0000062"))) {
2176
+ return true;
2177
+ }
2178
+ if (uri.equals(_namespace_CDAO("CDAO_0000063"))) {
2179
+ return true;
2180
+ }
2181
+ if (uri.equals(_namespace_CDAO("CDAO_0000064"))) {
2182
+ return true;
2183
+ }
2184
+ if (uri.equals(_namespace_CDAO("CDAO_0000065"))) {
2185
+ return true;
2186
+ }
2187
+ if (uri.equals(_namespace_CDAO("CDAO_0000066"))) {
2188
+ return true;
2189
+ }
2190
+ if (uri.equals(_namespace_CDAO("CDAO_0000067"))) {
2191
+ return true;
2192
+ }
2193
+ if (uri.equals(_namespace_CDAO("CDAO_0000068"))) {
2194
+ return true;
2195
+ }
2196
+ if (uri.equals(_namespace_CDAO("CDAO_0000069"))) {
2197
+ return true;
2198
+ }
2199
+ if (uri.equals(_namespace_CDAO("CDAO_0000070"))) {
2200
+ return true;
2201
+ }
2202
+ if (uri.equals(_namespace_CDAO("CDAO_0000071"))) {
2203
+ return true;
2204
+ }
2205
+ if (uri.equals(_namespace_CDAO("CDAO_0000072"))) {
2206
+ return true;
2207
+ }
2208
+ if (uri.equals(_namespace_CDAO("CDAO_0000073"))) {
2209
+ return true;
2210
+ }
2211
+ if (uri.equals(_namespace_CDAO("CDAO_0000074"))) {
2212
+ return true;
2213
+ }
2214
+ if (uri.equals(_namespace_CDAO("CDAO_0000075"))) {
2215
+ return true;
2216
+ }
2217
+ if (uri.equals(_namespace_CDAO("CDAO_0000076"))) {
2218
+ return true;
2219
+ }
2220
+ if (uri.equals(_namespace_CDAO("CDAO_0000077"))) {
2221
+ return true;
2222
+ }
2223
+ if (uri.equals(_namespace_CDAO("CDAO_0000078"))) {
2224
+ return true;
2225
+ }
2226
+ if (uri.equals(_namespace_CDAO("CDAO_0000079"))) {
2227
+ return true;
2228
+ }
2229
+ if (uri.equals(_namespace_CDAO("CDAO_0000080"))) {
2230
+ return true;
2231
+ }
2232
+ if (uri.equals(_namespace_CDAO("CDAO_0000081"))) {
2233
+ return true;
2234
+ }
2235
+ if (uri.equals(_namespace_CDAO("CDAO_0000082"))) {
2236
+ return true;
2237
+ }
2238
+ if (uri.equals(_namespace_CDAO("CDAO_0000083"))) {
2239
+ return true;
2240
+ }
2241
+ if (uri.equals(_namespace_CDAO("CDAO_0000084"))) {
2242
+ return true;
2243
+ }
2244
+ if (uri.equals(_namespace_CDAO("CDAO_0000085"))) {
2245
+ return true;
2246
+ }
2247
+ if (uri.equals(_namespace_CDAO("CDAO_0000086"))) {
2248
+ return true;
2249
+ }
2250
+ if (uri.equals(_namespace_CDAO("CDAO_0000087"))) {
2251
+ return true;
2252
+ }
2253
+ if (uri.equals(_namespace_CDAO("CDAO_0000088"))) {
2254
+ return true;
2255
+ }
2256
+ if (uri.equals(_namespace_CDAO("CDAO_0000089"))) {
2257
+ return true;
2258
+ }
2259
+ if (uri.equals(_namespace_CDAO("CDAO_0000090"))) {
2260
+ return true;
2261
+ }
2262
+ if (uri.equals(_namespace_CDAO("CDAO_0000091"))) {
2263
+ return true;
2264
+ }
2265
+ if (uri.equals(_namespace_CDAO("CDAO_0000092"))) {
2266
+ return true;
2267
+ }
2268
+ if (uri.equals(_namespace_CDAO("CDAO_0000093"))) {
2269
+ return true;
2270
+ }
2271
+ if (uri.equals(_namespace_CDAO("CDAO_0000094"))) {
2272
+ return true;
2273
+ }
2274
+ if (uri.equals(_namespace_CDAO("CDAO_0000095"))) {
2275
+ return true;
2276
+ }
2277
+ if (uri.equals(_namespace_CDAO("CDAO_0000096"))) {
2278
+ return true;
2279
+ }
2280
+ if (uri.equals(_namespace_CDAO("CDAO_0000097"))) {
2281
+ return true;
2282
+ }
2283
+ if (uri.equals(_namespace_CDAO("CDAO_0000098"))) {
2284
+ return true;
2285
+ }
2286
+ if (uri.equals(_namespace_CDAO("CDAO_0000099"))) {
2287
+ return true;
2288
+ }
2289
+ if (uri.equals(_namespace_CDAO("CDAO_0000100"))) {
2290
+ return true;
2291
+ }
2292
+ if (uri.equals(_namespace_CDAO("CDAO_0000101"))) {
2293
+ return true;
2294
+ }
2295
+ if (uri.equals(_namespace_CDAO("CDAO_0000102"))) {
2296
+ return true;
2297
+ }
2298
+ if (uri.equals(_namespace_CDAO("CDAO_0000103"))) {
2299
+ return true;
2300
+ }
2301
+ if (uri.equals(_namespace_CDAO("CDAO_0000104"))) {
2302
+ return true;
2303
+ }
2304
+ if (uri.equals(_namespace_CDAO("CDAO_0000105"))) {
2305
+ return true;
2306
+ }
2307
+ if (uri.equals(_namespace_CDAO("CDAO_0000107"))) {
2308
+ return true;
2309
+ }
2310
+ if (uri.equals(_namespace_CDAO("CDAO_0000108"))) {
2311
+ return true;
2312
+ }
2313
+ if (uri.equals(_namespace_CDAO("CDAO_0000109"))) {
2314
+ return true;
2315
+ }
2316
+ if (uri.equals(_namespace_CDAO("CDAO_0000110"))) {
2317
+ return true;
2318
+ }
2319
+ if (uri.equals(_namespace_CDAO("CDAO_0000111"))) {
2320
+ return true;
2321
+ }
2322
+ if (uri.equals(_namespace_CDAO("CDAO_0000112"))) {
2323
+ return true;
2324
+ }
2325
+ if (uri.equals(_namespace_CDAO("CDAO_0000113"))) {
2326
+ return true;
2327
+ }
2328
+ if (uri.equals(_namespace_CDAO("CDAO_0000114"))) {
2329
+ return true;
2330
+ }
2331
+ if (uri.equals(_namespace_CDAO("CDAO_0000115"))) {
2332
+ return true;
2333
+ }
2334
+ if (uri.equals(_namespace_CDAO("CDAO_0000116"))) {
2335
+ return true;
2336
+ }
2337
+ if (uri.equals(_namespace_CDAO("CDAO_0000117"))) {
2338
+ return true;
2339
+ }
2340
+ if (uri.equals(_namespace_CDAO("CDAO_0000118"))) {
2341
+ return true;
2342
+ }
2343
+ if (uri.equals(_namespace_CDAO("CDAO_0000120"))) {
2344
+ return true;
2345
+ }
2346
+ if (uri.equals(_namespace_CDAO("CDAO_0000121"))) {
2347
+ return true;
2348
+ }
2349
+ if (uri.equals(_namespace_CDAO("CDAO_0000122"))) {
2350
+ return true;
2351
+ }
2352
+ if (uri.equals(_namespace_CDAO("CDAO_0000124"))) {
2353
+ return true;
2354
+ }
2355
+ if (uri.equals(_namespace_CDAO("CDAO_0000125"))) {
2356
+ return true;
2357
+ }
2358
+ if (uri.equals(_namespace_CDAO("CDAO_0000126"))) {
2359
+ return true;
2360
+ }
2361
+ if (uri.equals(_namespace_CDAO("CDAO_0000127"))) {
2362
+ return true;
2363
+ }
2364
+ if (uri.equals(_namespace_CDAO("CDAO_0000128"))) {
2365
+ return true;
2366
+ }
2367
+ if (uri.equals(_namespace_CDAO("CDAO_0000129"))) {
2368
+ return true;
2369
+ }
2370
+ if (uri.equals(_namespace_CDAO("CDAO_0000130"))) {
2371
+ return true;
2372
+ }
2373
+ if (uri.equals(_namespace_CDAO("CDAO_0000131"))) {
2374
+ return true;
2375
+ }
2376
+ if (uri.equals(_namespace_CDAO("CDAO_0000132"))) {
2377
+ return true;
2378
+ }
2379
+ if (uri.equals(_namespace_CDAO("CDAO_0000133"))) {
2380
+ return true;
2381
+ }
2382
+ if (uri.equals(_namespace_CDAO("CDAO_0000134"))) {
2383
+ return true;
2384
+ }
2385
+ if (uri.equals(_namespace_CDAO("CDAO_0000136"))) {
2386
+ return true;
2387
+ }
2388
+ if (uri.equals(_namespace_CDAO("CDAO_0000137"))) {
2389
+ return true;
2390
+ }
2391
+ if (uri.equals(_namespace_CDAO("CDAO_0000138"))) {
2392
+ return true;
2393
+ }
2394
+ if (uri.equals(_namespace_CDAO("CDAO_0000139"))) {
2395
+ return true;
2396
+ }
2397
+ if (uri.equals(_namespace_CDAO("CDAO_0000140"))) {
2398
+ return true;
2399
+ }
2400
+ if (uri.equals(_namespace_CDAO("CDAO_0000141"))) {
2401
+ return true;
2402
+ }
2403
+ return false;
2404
+ }
2405
+
2406
+ /**
2407
+ * Determines whether the given URI is a named individual.
2408
+ *
2409
+ * @param uri URI that is tested for being a named individual
2410
+ */
2411
+ public static boolean isNamedIndividual(Resource uri) {
2412
+ if (uri.equals(_namespace_CDAO("CDAO_0000220"))) {
2413
+ return true;
2414
+ }
2415
+ if (uri.equals(_namespace_CDAO("CDAO_0000221"))) {
2416
+ return true;
2417
+ }
2418
+ if (uri.equals(_namespace_CDAO("CDAO_0000222"))) {
2419
+ return true;
2420
+ }
2421
+ if (uri.equals(_namespace_CDAO("CDAO_0000223"))) {
2422
+ return true;
2423
+ }
2424
+ if (uri.equals(_namespace_CDAO("CDAO_0000224"))) {
2425
+ return true;
2426
+ }
2427
+ if (uri.equals(_namespace_CDAO("CDAO_0000225"))) {
2428
+ return true;
2429
+ }
2430
+ if (uri.equals(_namespace_CDAO("CDAO_0000226"))) {
2431
+ return true;
2432
+ }
2433
+ if (uri.equals(_namespace_CDAO("CDAO_0000227"))) {
2434
+ return true;
2435
+ }
2436
+ return false;
2437
+ }
2438
+
2439
+ /**
2440
+ * Returns only those URIs that fall under a designated parent URI.
2441
+ *
2442
+ * @param uris Set of URIs that are tested whether they have the given parent URI.
2443
+ * @param parent Parent URI.
2444
+ */
2445
+ public static Set<Resource> withParent(Set<Resource> uris, final Resource parent) {
2446
+ return new HashSet<Resource>(CollectionUtils.select(uris, new Predicate() { public boolean evaluate(Object uri) { return hasParent((Resource)uri, parent); } }));
2447
+ }
2448
+
2449
+ /**
2450
+ * Recursively tries to determine the parent for a given URI.
2451
+ *
2452
+ * @param uri URI that is tested for whether it has the given parent URI.
2453
+ * @param parent Parent URI.
2454
+ */
2455
+ public static boolean hasParent(Resource uri, Resource parent) {
2456
+ if (__parent_properties.containsKey(uri)) {
2457
+ if (__parent_properties.get(uri).equals(parent)) {
2458
+ return true;
2459
+ }
2460
+ return hasParent((Resource)__parent_properties.get(uri), parent);
2461
+ }
2462
+ return false;
2463
+ }
2464
+
2465
+ private static Resource _namespace_CDAO(String accession) {
2466
+ return ResourceFactory.createResource("http://purl.obolibrary.org/obo/" + accession);
2467
+ }
2468
+
2469
+
2470
+ private static Map<Resource, Resource> __parent_properties = _init___parent_properties();
2471
+
2472
+ private static Map<Resource, Resource> _init___parent_properties() {
2473
+ Map<Resource, Resource> map = new HashMap<Resource, Resource>();
2474
+
2475
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000142"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2476
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000143"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000146"));
2477
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000144"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2478
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000145"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000184"));
2479
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000146"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000190"));
2480
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000147"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000190"));
2481
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000148"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2482
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000149"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000174"));
2483
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000150"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2484
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000151"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2485
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000152"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000205"));
2486
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000153"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2487
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000154"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000183"));
2488
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000156"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000184"));
2489
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000158"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000206"));
2490
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000159"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000182"));
2491
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000162"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2492
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000166"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000205"));
2493
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000168"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000206"));
2494
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000170"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000183"));
2495
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000171"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2496
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000173"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000205"));
2497
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000174"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2498
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000175"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000184"));
2499
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000176"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2500
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000177"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000146"));
2501
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000179"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000144"));
2502
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000180"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000205"));
2503
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000182"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2504
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000183"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000153"));
2505
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000184"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2506
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000185"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000182"));
2507
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000186"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000182"));
2508
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000188"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000161"));
2509
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000189"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000184"));
2510
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000191"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000190"));
2511
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000192"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000190"));
2512
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000193"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2513
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000195"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000206"));
2514
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000197"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2515
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000198"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2516
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000199"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000161"));
2517
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000200"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000190"));
2518
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000201"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000162"));
2519
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000202"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2520
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000203"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000190"));
2521
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000204"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2522
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000205"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000190"));
2523
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000206"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000183"));
2524
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000207"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000153"));
2525
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000208"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000178"));
2526
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000209"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000162"));
2527
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000210"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000182"));
2528
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000213"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000215"));
2529
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000218"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000215"));
2530
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000002"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000050"));
2531
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000003"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000022"));
2532
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000005"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000074"));
2533
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000007"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000138"));
2534
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000008"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000089"));
2535
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000009"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000115"));
2536
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000010"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000009"));
2537
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000011"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000074"));
2538
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000013"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000020"));
2539
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000014"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000044"));
2540
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000015"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000039"));
2541
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000016"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000070"));
2542
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000017"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000110"));
2543
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000018"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000110"));
2544
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000019"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000098"));
2545
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000020"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000007"));
2546
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000021"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000020"));
2547
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000023"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000017"));
2548
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000027"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000088"));
2549
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000032"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000025"));
2550
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000033"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000026"));
2551
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000034"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000134"));
2552
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000035"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000009"));
2553
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000039"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000057"));
2554
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000040"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000042"));
2555
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000026"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000055"));
2556
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000110"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000132"));
2557
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000100"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000126"));
2558
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000089"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000137"));
2559
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000107"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000114"));
2560
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000050"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000113"));
2561
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000063"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000061"));
2562
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000064"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000125"));
2563
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000065"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000097"));
2564
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000067"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000074"));
2565
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000069"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000074"));
2566
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000072"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000006"));
2567
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000073"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000110"));
2568
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000074"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000044"));
2569
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000075"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000111"));
2570
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000076"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000034"));
2571
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000077"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000064"));
2572
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000079"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000074"));
2573
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000081"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000074"));
2574
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000082"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000063"));
2575
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000083"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000100"));
2576
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000085"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000088"));
2577
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000087"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000133"));
2578
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000088"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000110"));
2579
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000090"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000100"));
2580
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000092"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000022"));
2581
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000093"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000020"));
2582
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000095"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000022"));
2583
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000096"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000006"));
2584
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000103"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000063"));
2585
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000104"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000105"));
2586
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000025"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000108"));
2587
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000140"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000110"));
2588
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000006"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000128"));
2589
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000071"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000112"));
2590
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000111"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000121"));
2591
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000066"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000127"));
2592
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000132"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000129"));
2593
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000127"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000130"));
2594
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000070"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000136"));
2595
+ map.put(ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000141"), ResourceFactory.createResource("http://purl.obolibrary.org/obo/CDAO_0000009"));
2596
+
2597
+ return map;
2598
+ }
2599
+
2600
+
2601
+ }
2602
+