biointerchange 0.2.2 → 1.0.0

data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GFF3O.java

@@ -18,7 +18,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0004)
    */
   public static Resource seqid() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0004");
+    return _namespace_GFF3O("GFF3_0004");
   }
 
   /**
@@ -30,7 +30,7 @@ public class GFF3O {
    *   (http://www.biointerchange.org/gff3o#GFF3_0045)
    */
   public static Set<Resource> strand() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0010"), _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0045") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GFF3O("GFF3_0010"), _namespace_GFF3O("GFF3_0045") }));
   }
 
   /**
@@ -38,7 +38,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0012)
    */
   public static Resource attributes() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0012");
+    return _namespace_GFF3O("GFF3_0012");
   }
 
   /**
@@ -46,7 +46,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0014)
    */
   public static Resource parent() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0014");
+    return _namespace_GFF3O("GFF3_0014");
   }
 
   /**
@@ -54,7 +54,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0015)
    */
   public static Resource contains() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0015");
+    return _namespace_GFF3O("GFF3_0015");
   }
 
   /**
@@ -66,7 +66,7 @@ public class GFF3O {
    *   (http://www.biointerchange.org/gff3o#GFF3_0050)
    */
   public static Set<Resource> region() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0021"), _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0050") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GFF3O("GFF3_0021"), _namespace_GFF3O("GFF3_0050") }));
   }
 
   /**
@@ -74,7 +74,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0023)
    */
   public static Resource species() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0023");
+    return _namespace_GFF3O("GFF3_0023");
   }
 
   /**
@@ -86,7 +86,7 @@ public class GFF3O {
    *   (http://www.biointerchange.org/gff3o#GFF3_0027)
    */
   public static Set<Resource> set_properties() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0025"), _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0027") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GFF3O("GFF3_0025"), _namespace_GFF3O("GFF3_0027") }));
   }
 
   /**
@@ -98,7 +98,7 @@ public class GFF3O {
    *   (http://www.biointerchange.org/gff3o#GFF3_0028)
    */
   public static Set<Resource> feature_properties() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0026"), _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0028") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GFF3O("GFF3_0026"), _namespace_GFF3O("GFF3_0028") }));
   }
 
   /**
@@ -106,7 +106,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0039)
    */
   public static Resource target() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0039");
+    return _namespace_GFF3O("GFF3_0039");
   }
 
   /**
@@ -118,7 +118,7 @@ public class GFF3O {
    *   (http://www.biointerchange.org/gff3o#GFF3_0040)
    */
   public static Set<Resource> target_properties() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0044"), _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0040") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GFF3O("GFF3_0044"), _namespace_GFF3O("GFF3_0040") }));
   }
 
   /**
@@ -126,7 +126,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0047)
    */
   public static Resource derives_from() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0047");
+    return _namespace_GFF3O("GFF3_0047");
   }
 
   /**
@@ -134,7 +134,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0056)
    */
   public static Resource feature_ontology() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0056");
+    return _namespace_GFF3O("GFF3_0056");
   }
 
   /**
@@ -142,7 +142,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0005)
    */
   public static Resource source() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0005");
+    return _namespace_GFF3O("GFF3_0005");
   }
 
   /**
@@ -150,7 +150,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0006)
    */
   public static Resource type() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0006");
+    return _namespace_GFF3O("GFF3_0006");
   }
 
   /**
@@ -165,7 +165,7 @@ public class GFF3O {
    *   (http://www.biointerchange.org/gff3o#GFF3_0054)
    */
   public static Set<Resource> start() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0007"), _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0042"), _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0054") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GFF3O("GFF3_0007"), _namespace_GFF3O("GFF3_0042"), _namespace_GFF3O("GFF3_0054") }));
   }
 
   /**
@@ -180,7 +180,7 @@ public class GFF3O {
    *   (http://www.biointerchange.org/gff3o#GFF3_0055)
    */
   public static Set<Resource> end() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0008"), _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0043"), _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0055") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GFF3O("GFF3_0008"), _namespace_GFF3O("GFF3_0043"), _namespace_GFF3O("GFF3_0055") }));
   }
 
   /**
@@ -188,7 +188,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0009)
    */
   public static Resource score() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0009");
+    return _namespace_GFF3O("GFF3_0009");
   }
 
   /**
@@ -196,7 +196,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0011)
    */
   public static Resource phase() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0011");
+    return _namespace_GFF3O("GFF3_0011");
   }
 
   /**
@@ -204,7 +204,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0013)
    */
   public static Resource tag() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0013");
+    return _namespace_GFF3O("GFF3_0013");
   }
 
   /**
@@ -212,7 +212,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0022)
    */
   public static Resource version() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0022");
+    return _namespace_GFF3O("GFF3_0022");
   }
 
   /**
@@ -220,7 +220,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0024)
    */
   public static Resource build() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0024");
+    return _namespace_GFF3O("GFF3_0024");
   }
 
   /**
@@ -228,7 +228,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0029)
    */
   public static Resource attribute_properties() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0029");
+    return _namespace_GFF3O("GFF3_0029");
   }
 
   /**
@@ -236,7 +236,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0034)
    */
   public static Resource dbxref() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0034");
+    return _namespace_GFF3O("GFF3_0034");
   }
 
   /**
@@ -244,7 +244,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0035)
    */
   public static Resource ontology_term() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0035");
+    return _namespace_GFF3O("GFF3_0035");
   }
 
   /**
@@ -252,7 +252,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0036)
    */
   public static Resource name() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0036");
+    return _namespace_GFF3O("GFF3_0036");
   }
 
   /**
@@ -260,7 +260,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0037)
    */
   public static Resource alias() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0037");
+    return _namespace_GFF3O("GFF3_0037");
   }
 
   /**
@@ -268,7 +268,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0041)
    */
   public static Resource target_id() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0041");
+    return _namespace_GFF3O("GFF3_0041");
   }
 
   /**
@@ -276,7 +276,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0046)
    */
   public static Resource gap() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0046");
+    return _namespace_GFF3O("GFF3_0046");
   }
 
   /**
@@ -284,7 +284,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0048)
    */
   public static Resource note() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0048");
+    return _namespace_GFF3O("GFF3_0048");
   }
 
   /**
@@ -292,7 +292,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0049)
    */
   public static Resource is_circular() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0049");
+    return _namespace_GFF3O("GFF3_0049");
   }
 
   /**
@@ -300,7 +300,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0052)
    */
   public static Resource landmark_properties() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0052");
+    return _namespace_GFF3O("GFF3_0052");
   }
 
   /**
@@ -308,7 +308,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0053)
    */
   public static Resource id() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0053");
+    return _namespace_GFF3O("GFF3_0053");
   }
 
   /**
@@ -320,7 +320,7 @@ public class GFF3O {
    *   (http://www.biointerchange.org/gff3o#GFF3_0058)
    */
   public static Set<Resource> sequence() {
-    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0057"), _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0058") }));
+    return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GFF3O("GFF3_0057"), _namespace_GFF3O("GFF3_0058") }));
   }
 
   /**
@@ -328,7 +328,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0001)
    */
   public static Resource Set() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0001");
+    return _namespace_GFF3O("GFF3_0001");
   }
 
   /**
@@ -336,7 +336,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0002)
    */
   public static Resource Feature() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0002");
+    return _namespace_GFF3O("GFF3_0002");
   }
 
   /**
@@ -344,7 +344,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0003)
    */
   public static Resource Attribute() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0003");
+    return _namespace_GFF3O("GFF3_0003");
   }
 
   /**
@@ -352,7 +352,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0016)
    */
   public static Resource Strand() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0016");
+    return _namespace_GFF3O("GFF3_0016");
   }
 
   /**
@@ -360,7 +360,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0038)
    */
   public static Resource Target() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0038");
+    return _namespace_GFF3O("GFF3_0038");
   }
 
   /**
@@ -368,7 +368,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0051)
    */
   public static Resource Landmark() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0051");
+    return _namespace_GFF3O("GFF3_0051");
   }
 
   /**
@@ -376,7 +376,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0017)
    */
   public static Resource Positive() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0017");
+    return _namespace_GFF3O("GFF3_0017");
   }
 
   /**
@@ -384,7 +384,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0018)
    */
   public static Resource Negative() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0018");
+    return _namespace_GFF3O("GFF3_0018");
   }
 
   /**
@@ -392,7 +392,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0019)
    */
   public static Resource UnknownStrand() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0019");
+    return _namespace_GFF3O("GFF3_0019");
   }
 
   /**
@@ -400,7 +400,7 @@ public class GFF3O {
    * (http://www.biointerchange.org/gff3o#GFF3_0020)
    */
   public static Resource NotStranded() {
-    return _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0020");
+    return _namespace_GFF3O("GFF3_0020");
   }
 
   /**
@@ -409,49 +409,49 @@ public class GFF3O {
    * @param uri URI that is tested for being an object property
    */
   public static boolean isObjectProperty(Resource uri) {
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0004")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0004"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0010")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0010"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0012")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0012"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0014")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0014"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0015")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0015"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0021")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0021"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0023")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0023"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0025")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0025"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0026")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0026"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0039")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0039"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0044")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0044"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0045")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0045"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0047")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0047"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0050")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0050"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0056")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0056"))) {
       return true;
     }
     return false;
@@ -463,91 +463,91 @@ public class GFF3O {
    * @param uri URI that is tested for being a datatype property
    */
   public static boolean isDatatypeProperty(Resource uri) {
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0005")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0005"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0006")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0006"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0007")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0007"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0008")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0008"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0009")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0009"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0011")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0011"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0013")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0013"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0022")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0022"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0024")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0024"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0027")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0027"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0028")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0028"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0029")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0029"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0034")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0034"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0035")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0035"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0036")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0036"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0037")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0037"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0040")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0040"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0041")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0041"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0042")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0042"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0043")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0043"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0046")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0046"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0048")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0048"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0049")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0049"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0052")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0052"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0053")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0053"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0054")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0054"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0055")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0055"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0057")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0057"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0058")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0058"))) {
       return true;
     }
     return false;
@@ -559,22 +559,22 @@ public class GFF3O {
    * @param uri URI that is tested for being a class
    */
   public static boolean isClass(Resource uri) {
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0001")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0001"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0002")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0002"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0003")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0003"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0016")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0016"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0038")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0038"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0051")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0051"))) {
       return true;
     }
     return false;
@@ -586,16 +586,16 @@ public class GFF3O {
    * @param uri URI that is tested for being a named individual
    */
   public static boolean isNamedIndividual(Resource uri) {
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0017")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0017"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0018")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0018"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0019")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0019"))) {
       return true;
     }
-    if (uri == _namespace_GFF3O("http://www.biointerchange.org/gff3o#GFF3_0020")) {
+    if (uri.equals(_namespace_GFF3O("GFF3_0020"))) {
       return true;
     }
     return false;
@@ -619,7 +619,7 @@ public class GFF3O {
    */
   public static boolean hasParent(Resource uri, Resource parent) {
     if (__parent_properties.containsKey(uri)) {
-      if (__parent_properties.get(uri) == parent) {
+      if (__parent_properties.get(uri).equals(parent)) {
         return true;
       }
       return hasParent((Resource)__parent_properties.get(uri), parent);
@@ -628,11 +628,7 @@ public class GFF3O {
   }
 
   private static Resource _namespace_GFF3O(String accession) {
-    if (isClass(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#" + accession))) {
-      return ResourceFactory.createResource("http://www.biointerchange.org/gff3o#" + accession);
-    } else {
-      return ResourceFactory.createProperty("http://www.biointerchange.org/gff3o#" + accession);
-    }
+    return ResourceFactory.createResource("http://www.biointerchange.org/gff3o#" + accession);
   }
 
 
@@ -641,6 +637,42 @@ public class GFF3O {
   private static Map<Resource, Resource> _init___parent_properties() {
     Map<Resource, Resource> map = new HashMap<Resource, Resource>();
 
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0004"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0026"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0010"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0026"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0012"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0026"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0014"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0026"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0015"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0025"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0021"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0026"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0023"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0025"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0039"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0026"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0045"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0044"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0047"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0026"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0050"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0044"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0056"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0025"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0005"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0028"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0006"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0028"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0007"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0028"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0008"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0028"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0009"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0028"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0011"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0028"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0013"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0029"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0022"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0027"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0024"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0027"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0034"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0028"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0035"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0028"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0036"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0028"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0037"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0028"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0041"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0040"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0042"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0040"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0043"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0040"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0046"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0028"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0048"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0028"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0049"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0028"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0053"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0052"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0054"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0052"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0055"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0052"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0057"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0028"));
+    map.put(ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0058"), ResourceFactory.createResource("http://www.biointerchange.org/gff3o#GFF3_0052"));
 
     return map;
   }