biointerchange 0.2.2 → 1.0.0

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Files changed (55) hide show
  1. data/Gemfile +1 -0
  2. data/README.md +269 -19
  3. data/VERSION +1 -1
  4. data/examples/bininda_emonds_mammals.new +1 -0
  5. data/examples/rdfization.rb +17 -0
  6. data/examples/tree1.new +1 -0
  7. data/examples/tree2.new +1 -0
  8. data/examples/vocabulary.rb +26 -5
  9. data/generators/javaify.rb +12 -18
  10. data/generators/make_supplement_releases.rb +2 -0
  11. data/generators/pythonify.rb +21 -8
  12. data/generators/rdfxml.rb +15 -1
  13. data/lib/biointerchange/cdao.rb +2014 -0
  14. data/lib/biointerchange/core.rb +70 -77
  15. data/lib/biointerchange/genomics/gff3_rdf_ntriples.rb +16 -0
  16. data/lib/biointerchange/genomics/gff3_reader.rb +18 -4
  17. data/lib/biointerchange/genomics/gvf_reader.rb +14 -0
  18. data/lib/biointerchange/phylogenetics/cdao_rdf_ntriples.rb +108 -0
  19. data/lib/biointerchange/phylogenetics/newick_reader.rb +81 -0
  20. data/lib/biointerchange/phylogenetics/tree_set.rb +50 -0
  21. data/lib/biointerchange/registry.rb +50 -8
  22. data/lib/biointerchange/so.rb +150 -0
  23. data/lib/biointerchange/textmining/pdfx_xml_reader.rb +21 -2
  24. data/lib/biointerchange/textmining/pubannos_json_reader.rb +24 -1
  25. data/lib/biointerchange/textmining/text_mining_rdf_ntriples.rb +9 -0
  26. data/lib/biointerchange/textmining/text_mining_reader.rb +5 -5
  27. data/spec/phylogenetics_spec.rb +79 -0
  28. data/supplemental/java/biointerchange/pom.xml +1 -1
  29. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/CDAO.java +2602 -0
  30. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/FALDO.java +30 -28
  31. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GFF3O.java +136 -104
  32. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GVF1O.java +367 -278
  33. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SIO.java +4388 -3127
  34. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SO.java +5970 -4351
  35. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SOFA.java +733 -544
  36. data/supplemental/java/biointerchange/src/test/java/org/biointerchange/AppTest.java +3 -1
  37. data/supplemental/python/biointerchange/cdao.py +2021 -0
  38. data/supplemental/python/biointerchange/faldo.py +37 -38
  39. data/supplemental/python/biointerchange/gff3o.py +156 -157
  40. data/supplemental/python/biointerchange/goxref.py +172 -172
  41. data/supplemental/python/biointerchange/gvf1o.py +428 -429
  42. data/supplemental/python/biointerchange/sio.py +3133 -3134
  43. data/supplemental/python/biointerchange/so.py +6626 -6527
  44. data/supplemental/python/biointerchange/sofa.py +790 -791
  45. data/supplemental/python/example.py +23 -5
  46. data/supplemental/python/setup.py +2 -2
  47. data/web/about.html +1 -0
  48. data/web/api.html +223 -15
  49. data/web/biointerchange.js +27 -6
  50. data/web/cli.html +8 -3
  51. data/web/index.html +6 -2
  52. data/web/ontologies.html +3 -0
  53. data/web/service/rdfizer.fcgi +7 -15
  54. data/web/webservices.html +6 -2
  55. metadata +30 -3
@@ -0,0 +1,2014 @@
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+ require 'rdf'
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+ module BioInterchange
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+
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+ class CDAO
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000142)
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+ def self.has_Character
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000142')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000143)
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+ def self.belongs_to_Edge_as_Child
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000143')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000144)
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+ def self.has_Ancestor
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000144')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000145)
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+ def self.has_Nucleotide_State
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000145')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000146)
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+ def self.belongs_to_Edge
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000146')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000147)
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+ def self.belongs_to_Character_State_Data_Matrix
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000147')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000148)
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+ def self.has_Root
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000148')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000149)
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+ def self.has_Child
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000149')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000150)
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+ def self.has_First_Coordinate_Item
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000150')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000151)
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+ def self.has_Coordinate
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000151')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000152)
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+ def self.belongs_to_Continuous_Character
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000152')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000153)
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+ def self.has_Datum
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000153')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000154)
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+ def self.has_Standard_Datum
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000154')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000155)
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+ def self.subtree_of
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000155')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000156)
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+ def self.has_Amino_Acid_State
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000156')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000157)
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+ def self.is_annotation_of
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000157')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000158)
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+ def self.has_RNA_Datum
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000158')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000159)
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+ def self.has_Left_State
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000159')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000160)
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+ def self.precedes
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000160')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000161)
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+ def self.exclude
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000161')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000162)
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+ def self.has_Node
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000162')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000163)
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+ def self.nca_node_of
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000163')
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+ end
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+
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+ # Associates a TU to some external taxonomy reference.
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+ # (http://purl.obolibrary.org/obo/CDAO_0000164)
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+ def self.has_External_Reference
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000164')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000165)
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+ def self.has_Coordinate_System
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000165')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000166)
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+ def self.belongs_to_Nucleotide_Character
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000166')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000167)
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+ def self.connects_to
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000167')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000168)
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+ def self.has_Amino_Acid_Datum
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000168')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000169)
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+ def self.hereditary_change_of
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000169')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000170)
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+ def self.has_Compound_Datum
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000170')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000171)
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+ def self.has_Descendants
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000171')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000172)
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+ def self.reconciliation_of
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000172')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000173)
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+ def self.belongs_to_Amino_Acid_Character
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000173')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000174)
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+ def self.has_Descendant
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000174')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000175)
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+ def self.has_Continuous_State
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000175')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000176)
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+ def self.has_Type
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000176')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000177)
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+ def self.belongs_to_Edge_as_Parent
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000177')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000178)
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+ def self.has
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000179)
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+ def self.has_Parent
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000179')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000180)
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+ def self.belongs_to_Compound_Character
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000180')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000181)
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+ def self.homologous_to
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000181')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000182)
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+ def self.has_Change_Component
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000182')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000183)
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+ def self.has_Categorical_Datum
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000183')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000184)
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+ def self.has_State
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000184')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000185)
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+ def self.has_Left_Node
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000185')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000186)
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+ def self.has_Right_State
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000186')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000187)
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+ def self.represents_TU
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000187')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000188)
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+ def self.exclude_Node
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000188')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000189)
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+ def self.has_Compound_State
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000189')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000190)
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+ def self.belongs_to
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000190')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000191)
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+ def self.belongs_to_TU
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000191')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000192)
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+ def self.belongs_to_Network
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000192')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000193)
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+ def self.has_Annotation
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000193')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000194)
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+ def self.part_of
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000194')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000195)
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+ def self.has_Nucleotide_Datum
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000195')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000196)
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+ def self.represented_by_Node
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000196')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000197)
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+ def self.has_Remaining_Coordinate_List
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000197')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000198)
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+ def self.has_Element
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000198')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000199)
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+ def self.exclude_Subtree
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000199')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000200)
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+ def self.belongs_to_Tree
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000200')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000201)
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+ def self.has_Parent_Node
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000201')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000202)
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+ def self.has_Lineage_node
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000202')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000203)
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+ def self.belongs_to_Tree_as_Root
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000203')
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+ end
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+
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+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000204)
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+ def self.has_Hereditary_Change
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000204')
382
+ end
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+
384
+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000205)
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+ def self.belongs_to_Character
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000205')
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+ end
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+
390
+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000206)
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+ def self.has_Molecular_Datum
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+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000206')
394
+ end
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+
396
+ # -- No comment or description provided. --
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+ # (http://purl.obolibrary.org/obo/CDAO_0000207)
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+ def self.has_Continuous_Datum
399
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000207')
400
+ end
401
+
402
+ # -- No comment or description provided. --
403
+ # (http://purl.obolibrary.org/obo/CDAO_0000208)
404
+ def self.has_TU
405
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000208')
406
+ end
407
+
408
+ # -- No comment or description provided. --
409
+ # (http://purl.obolibrary.org/obo/CDAO_0000209)
410
+ def self.has_Child_Node
411
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000209')
412
+ end
413
+
414
+ # -- No comment or description provided. --
415
+ # (http://purl.obolibrary.org/obo/CDAO_0000210)
416
+ def self.has_Right_Node
417
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000210')
418
+ end
419
+
420
+ # -- No comment or description provided. --
421
+ # (http://purl.obolibrary.org/obo/CDAO_0000211)
422
+ def self.has_Precision
423
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000211')
424
+ end
425
+
426
+ # -- No comment or description provided. --
427
+ # (http://purl.obolibrary.org/obo/CDAO_0000212)
428
+ def self.has_Point_Coordinate_Value
429
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000212')
430
+ end
431
+
432
+ # -- No comment or description provided. --
433
+ # (http://purl.obolibrary.org/obo/CDAO_0000213)
434
+ def self.has_Int_Value
435
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000213')
436
+ end
437
+
438
+ # -- No comment or description provided. --
439
+ # (http://purl.obolibrary.org/obo/CDAO_0000214)
440
+ def self.has_Support_Value
441
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000214')
442
+ end
443
+
444
+ # -- No comment or description provided. --
445
+ # (http://purl.obolibrary.org/obo/CDAO_0000215)
446
+ def self.has_Value
447
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000215')
448
+ end
449
+
450
+ # -- No comment or description provided. --
451
+ # (http://purl.obolibrary.org/obo/CDAO_0000216)
452
+ def self.has_Uncertainty_Factor
453
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000216')
454
+ end
455
+
456
+ # -- No comment or description provided. --
457
+ # (http://purl.obolibrary.org/obo/CDAO_0000217)
458
+ def self.has_Range_End_Value
459
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000217')
460
+ end
461
+
462
+ # -- No comment or description provided. --
463
+ # (http://purl.obolibrary.org/obo/CDAO_0000218)
464
+ def self.has_Float_Value
465
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000218')
466
+ end
467
+
468
+ # -- No comment or description provided. --
469
+ # (http://purl.obolibrary.org/obo/CDAO_0000219)
470
+ def self.has_Range_Start_Value
471
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000219')
472
+ end
473
+
474
+ # -- No comment or description provided. --
475
+ # (http://purl.obolibrary.org/obo/CDAO_0000002)
476
+ def self.DesoxiRibonucleotideResidueStateDatum
477
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000002')
478
+ end
479
+
480
+ # -- No comment or description provided. --
481
+ # (http://purl.obolibrary.org/obo/CDAO_0000003)
482
+ def self.CoordinatePoint
483
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000003')
484
+ end
485
+
486
+ # -- No comment or description provided. --
487
+ # (http://purl.obolibrary.org/obo/CDAO_0000004)
488
+ def self.Lineage
489
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000004')
490
+ end
491
+
492
+ # -- No comment or description provided. --
493
+ # (http://purl.obolibrary.org/obo/CDAO_0000005)
494
+ def self.Phylo4Tree
495
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000005')
496
+ end
497
+
498
+ # -- No comment or description provided. --
499
+ # (http://purl.obolibrary.org/obo/CDAO_0000006)
500
+ def self.Network
501
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000006')
502
+ end
503
+
504
+ # This is a non-computible description of a model, not the fully specified mathematical model, which typically relates the probability of a transformation to various parameters.
505
+ # (http://purl.obolibrary.org/obo/CDAO_0000007)
506
+ def self.ModelDescription
507
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000007')
508
+ end
509
+
510
+ # -- No comment or description provided. --
511
+ # (http://purl.obolibrary.org/obo/CDAO_0000008)
512
+ def self.StandardStateDatum
513
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000008')
514
+ end
515
+
516
+ # -- No comment or description provided. --
517
+ # (http://purl.obolibrary.org/obo/CDAO_0000009)
518
+ def self.ContinuousCharacterLengthType
519
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000009')
520
+ end
521
+
522
+ # -- No comment or description provided. --
523
+ # (http://purl.obolibrary.org/obo/CDAO_0000010)
524
+ def self.ContinuousCharBayesianLengthType
525
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000010')
526
+ end
527
+
528
+ # -- No comment or description provided. --
529
+ # (http://purl.obolibrary.org/obo/CDAO_0000011)
530
+ def self.NEXUSTreeBlock
531
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000011')
532
+ end
533
+
534
+ # -- No comment or description provided. --
535
+ # (http://purl.obolibrary.org/obo/CDAO_0000012)
536
+ def self.RootedTree
537
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000012')
538
+ end
539
+
540
+ # -- No comment or description provided. --
541
+ # (http://purl.obolibrary.org/obo/CDAO_0000013)
542
+ def self.Kimura2Parameters
543
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000013')
544
+ end
545
+
546
+ # -- No comment or description provided. --
547
+ # (http://purl.obolibrary.org/obo/CDAO_0000014)
548
+ def self.TreeProcedure
549
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000014')
550
+ end
551
+
552
+ # This class should be renamed. These are not generic states but non-concrete states including gap, unknown and missing.
553
+ # (http://purl.obolibrary.org/obo/CDAO_0000015)
554
+ def self.Generic_State
555
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000015')
556
+ end
557
+
558
+ # -- No comment or description provided. --
559
+ # (http://purl.obolibrary.org/obo/CDAO_0000016)
560
+ def self.UnrootedSubtree
561
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000016')
562
+ end
563
+
564
+ # -- No comment or description provided. --
565
+ # (http://purl.obolibrary.org/obo/CDAO_0000017)
566
+ def self.UnresolvedTree
567
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000017')
568
+ end
569
+
570
+ # -- No comment or description provided. --
571
+ # (http://purl.obolibrary.org/obo/CDAO_0000018)
572
+ def self.BifurcatingTree
573
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000018')
574
+ end
575
+
576
+ # -- No comment or description provided. --
577
+ # (http://purl.obolibrary.org/obo/CDAO_0000019)
578
+ def self.ContinuousStateDatum
579
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000019')
580
+ end
581
+
582
+ # -- No comment or description provided. --
583
+ # (http://purl.obolibrary.org/obo/CDAO_0000020)
584
+ def self.SubstitutionModel
585
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000020')
586
+ end
587
+
588
+ # -- No comment or description provided. --
589
+ # (http://purl.obolibrary.org/obo/CDAO_0000021)
590
+ def self.JukesKantor
591
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000021')
592
+ end
593
+
594
+ # drawing from seqloc categories from NCBI at http://www.ncbi.nlm.nih.gov/IEB/ToolBox/SDKDOCS/SEQLOC.HTML#_Seq-loc:_Locations_on
595
+ # (http://purl.obolibrary.org/obo/CDAO_0000022)
596
+ def self.DatumCoordinate
597
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000022')
598
+ end
599
+
600
+ # -- No comment or description provided. --
601
+ # (http://purl.obolibrary.org/obo/CDAO_0000023)
602
+ def self.UnresolvedRootedTree
603
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000023')
604
+ end
605
+
606
+ # -- No comment or description provided. --
607
+ # (http://purl.obolibrary.org/obo/CDAO_0000024)
608
+ def self.Branch
609
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000024')
610
+ end
611
+
612
+ # -- No comment or description provided. --
613
+ # (http://purl.obolibrary.org/obo/CDAO_0000025)
614
+ def self.CharacterStateDataMatrixAnnotation
615
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000025')
616
+ end
617
+
618
+ # -- No comment or description provided. --
619
+ # (http://purl.obolibrary.org/obo/CDAO_0000026)
620
+ def self.AncestralNode
621
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000026')
622
+ end
623
+
624
+ # -- No comment or description provided. --
625
+ # (http://purl.obolibrary.org/obo/CDAO_0000027)
626
+ def self.UnresolvedUnrootedTree
627
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000027')
628
+ end
629
+
630
+ # -- No comment or description provided. --
631
+ # (http://purl.obolibrary.org/obo/CDAO_0000029)
632
+ def self.UncertainStateDomain
633
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000029')
634
+ end
635
+
636
+ # -- No comment or description provided. --
637
+ # (http://purl.obolibrary.org/obo/CDAO_0000030)
638
+ def self.ReconcileTree
639
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000030')
640
+ end
641
+
642
+ # -- No comment or description provided. --
643
+ # (http://purl.obolibrary.org/obo/CDAO_0000031)
644
+ def self.Continuous
645
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000031')
646
+ end
647
+
648
+ # -- No comment or description provided. --
649
+ # (http://purl.obolibrary.org/obo/CDAO_0000032)
650
+ def self.AlignmentProcedure
651
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000032')
652
+ end
653
+
654
+ # -- No comment or description provided. --
655
+ # (http://purl.obolibrary.org/obo/CDAO_0000033)
656
+ def self.Dichotomy
657
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000033')
658
+ end
659
+
660
+ # -- No comment or description provided. --
661
+ # (http://purl.obolibrary.org/obo/CDAO_0000034)
662
+ def self.Molecular
663
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000034')
664
+ end
665
+
666
+ # -- No comment or description provided. --
667
+ # (http://purl.obolibrary.org/obo/CDAO_0000035)
668
+ def self.ContinuousCharParsimonyLengthType
669
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000035')
670
+ end
671
+
672
+ # -- No comment or description provided. --
673
+ # (http://purl.obolibrary.org/obo/CDAO_0000039)
674
+ def self.Categorical
675
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000039')
676
+ end
677
+
678
+ # Its possible that this base class should be discarded and that annotations should inherit from an imported base class if one exists.
679
+ # (http://purl.obolibrary.org/obo/CDAO_0000040)
680
+ def self.CDAOAnnotation
681
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000040')
682
+ end
683
+
684
+ # -- No comment or description provided. --
685
+ # (http://purl.obolibrary.org/obo/CDAO_0000041)
686
+ def self.originationEvent
687
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000041')
688
+ end
689
+
690
+ # -- No comment or description provided. --
691
+ # (http://purl.obolibrary.org/obo/CDAO_0000042)
692
+ def self.Polytomy
693
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000042')
694
+ end
695
+
696
+ # -- No comment or description provided. --
697
+ # (http://purl.obolibrary.org/obo/CDAO_0000043)
698
+ def self.PolymorphicStateDomain
699
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000043')
700
+ end
701
+
702
+ # -- No comment or description provided. --
703
+ # (http://purl.obolibrary.org/obo/CDAO_0000044)
704
+ def self.TreeAnnotation
705
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000044')
706
+ end
707
+
708
+ # -- No comment or description provided. --
709
+ # (http://purl.obolibrary.org/obo/CDAO_0000045)
710
+ def self.Standard
711
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000045')
712
+ end
713
+
714
+ # Its possible that this should not be classed as an 'annotation' since it contains data rather than meta-data.
715
+ # (http://purl.obolibrary.org/obo/CDAO_0000046)
716
+ def self.EdgeLength
717
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000046')
718
+ end
719
+
720
+ # -- No comment or description provided. --
721
+ # (http://purl.obolibrary.org/obo/CDAO_0000047)
722
+ def self.RibonucleotideResidue
723
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000047')
724
+ end
725
+
726
+ # -- No comment or description provided. --
727
+ # (http://purl.obolibrary.org/obo/CDAO_0000048)
728
+ def self.Clade
729
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000048')
730
+ end
731
+
732
+ # -- No comment or description provided. --
733
+ # (http://purl.obolibrary.org/obo/CDAO_0000049)
734
+ def self.DiscreteCharParsimonyLengthType
735
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000049')
736
+ end
737
+
738
+ # -- No comment or description provided. --
739
+ # (http://purl.obolibrary.org/obo/CDAO_0000050)
740
+ def self.MolecularStateDatum
741
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000050')
742
+ end
743
+
744
+ # -- No comment or description provided. --
745
+ # (http://purl.obolibrary.org/obo/CDAO_0000051)
746
+ def self.PolyphyleticGroup
747
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000051')
748
+ end
749
+
750
+ # -- No comment or description provided. --
751
+ # (http://purl.obolibrary.org/obo/CDAO_0000052)
752
+ def self.NexusDataBlock
753
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000052')
754
+ end
755
+
756
+ # -- No comment or description provided. --
757
+ # (http://purl.obolibrary.org/obo/CDAO_0000053)
758
+ def self.BranchingNode
759
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000053')
760
+ end
761
+
762
+ # -- No comment or description provided. --
763
+ # (http://purl.obolibrary.org/obo/CDAO_0000055)
764
+ def self.Compound
765
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000055')
766
+ end
767
+
768
+ # -- No comment or description provided. --
769
+ # (http://purl.obolibrary.org/obo/CDAO_0000056)
770
+ def self.CharacterStateDataMatrix
771
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000056')
772
+ end
773
+
774
+ # -- No comment or description provided. --
775
+ # (http://purl.obolibrary.org/obo/CDAO_0000057)
776
+ def self.RibonucleotideResidueStateDatum
777
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000057')
778
+ end
779
+
780
+ # -- No comment or description provided. --
781
+ # (http://purl.obolibrary.org/obo/CDAO_0000058)
782
+ def self.TimeCalibratedLengthType
783
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000058')
784
+ end
785
+
786
+ # -- No comment or description provided. --
787
+ # (http://purl.obolibrary.org/obo/CDAO_0000059)
788
+ def self.SetOfNodes
789
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000059')
790
+ end
791
+
792
+ # -- No comment or description provided. --
793
+ # (http://purl.obolibrary.org/obo/CDAO_0000060)
794
+ def self.MRCANode
795
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000060')
796
+ end
797
+
798
+ # -- No comment or description provided. --
799
+ # (http://purl.obolibrary.org/obo/CDAO_0000061)
800
+ def self.FASTADataMatrix
801
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000061')
802
+ end
803
+
804
+ # -- No comment or description provided. --
805
+ # (http://purl.obolibrary.org/obo/CDAO_0000062)
806
+ def self.evolutionaryTransition
807
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000062')
808
+ end
809
+
810
+ # -- No comment or description provided. --
811
+ # (http://purl.obolibrary.org/obo/CDAO_0000063)
812
+ def self.EdgeLengthType
813
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000063')
814
+ end
815
+
816
+ # -- No comment or description provided. --
817
+ # (http://purl.obolibrary.org/obo/CDAO_0000064)
818
+ def self.cladogeneticChange
819
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000064')
820
+ end
821
+
822
+ # -- No comment or description provided. --
823
+ # (http://purl.obolibrary.org/obo/CDAO_0000065)
824
+ def self.anageneticChange
825
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000065')
826
+ end
827
+
828
+ # -- No comment or description provided. --
829
+ # (http://purl.obolibrary.org/obo/CDAO_0000066)
830
+ def self.TUAnnotation
831
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000066')
832
+ end
833
+
834
+ # -- No comment or description provided. --
835
+ # (http://purl.obolibrary.org/obo/CDAO_0000067)
836
+ def self.PhyloTree
837
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000067')
838
+ end
839
+
840
+ # -- No comment or description provided. --
841
+ # (http://purl.obolibrary.org/obo/CDAO_0000068)
842
+ def self.ContinuousCharacter
843
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000068')
844
+ end
845
+
846
+ # -- No comment or description provided. --
847
+ # (http://purl.obolibrary.org/obo/CDAO_0000069)
848
+ def self.PHYLIPTree
849
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000069')
850
+ end
851
+
852
+ # -- No comment or description provided. --
853
+ # (http://purl.obolibrary.org/obo/CDAO_0000070)
854
+ def self.Subtree
855
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000070')
856
+ end
857
+
858
+ # Traits shown to be relevant for phylogenetic classification
859
+ # (http://purl.obolibrary.org/obo/CDAO_0000071)
860
+ def self.Character
861
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000071')
862
+ end
863
+
864
+ # -- No comment or description provided. --
865
+ # (http://purl.obolibrary.org/obo/CDAO_0000072)
866
+ def self.GalledTree
867
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000072')
868
+ end
869
+
870
+ # -- No comment or description provided. --
871
+ # (http://purl.obolibrary.org/obo/CDAO_0000073)
872
+ def self.SpeciesTree
873
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000073')
874
+ end
875
+
876
+ # -- No comment or description provided. --
877
+ # (http://purl.obolibrary.org/obo/CDAO_0000074)
878
+ def self.TreeFormat
879
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000074')
880
+ end
881
+
882
+ # -- No comment or description provided. --
883
+ # (http://purl.obolibrary.org/obo/CDAO_0000075)
884
+ def self.StandardCharacter
885
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000075')
886
+ end
887
+
888
+ # -- No comment or description provided. --
889
+ # (http://purl.obolibrary.org/obo/CDAO_0000076)
890
+ def self.AminoAcidResidue
891
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000076')
892
+ end
893
+
894
+ # -- No comment or description provided. --
895
+ # (http://purl.obolibrary.org/obo/CDAO_0000077)
896
+ def self.geneDuplication
897
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000077')
898
+ end
899
+
900
+ # -- No comment or description provided. --
901
+ # (http://purl.obolibrary.org/obo/CDAO_0000078)
902
+ def self.CompoundCharacter
903
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000078')
904
+ end
905
+
906
+ # -- No comment or description provided. --
907
+ # (http://purl.obolibrary.org/obo/CDAO_0000079)
908
+ def self.SIMMAPTree
909
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000079')
910
+ end
911
+
912
+ # -- No comment or description provided. --
913
+ # (http://purl.obolibrary.org/obo/CDAO_0000080)
914
+ def self.CommonAncestralNode
915
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000080')
916
+ end
917
+
918
+ # -- No comment or description provided. --
919
+ # (http://purl.obolibrary.org/obo/CDAO_0000081)
920
+ def self.NewickTree
921
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000081')
922
+ end
923
+
924
+ # -- No comment or description provided. --
925
+ # (http://purl.obolibrary.org/obo/CDAO_0000082)
926
+ def self.TimeProportionalLengthType
927
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000082')
928
+ end
929
+
930
+ # -- No comment or description provided. --
931
+ # (http://purl.obolibrary.org/obo/CDAO_0000083)
932
+ def self.DiscreteCharDistanceLengthType
933
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000083')
934
+ end
935
+
936
+ # -- No comment or description provided. --
937
+ # (http://purl.obolibrary.org/obo/CDAO_0000084)
938
+ def self.StarTree
939
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000084')
940
+ end
941
+
942
+ # -- No comment or description provided. --
943
+ # (http://purl.obolibrary.org/obo/CDAO_0000085)
944
+ def self.FullyResolvedUnrootedTree
945
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000085')
946
+ end
947
+
948
+ # -- No comment or description provided. --
949
+ # (http://purl.obolibrary.org/obo/CDAO_0000086)
950
+ def self.ParaphyleticGroup
951
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000086')
952
+ end
953
+
954
+ # -- No comment or description provided. --
955
+ # (http://purl.obolibrary.org/obo/CDAO_0000087)
956
+ def self.geneticEvent
957
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000087')
958
+ end
959
+
960
+ # -- No comment or description provided. --
961
+ # (http://purl.obolibrary.org/obo/CDAO_0000088)
962
+ def self.UnrootedTree
963
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000088')
964
+ end
965
+
966
+ # -- No comment or description provided. --
967
+ # (http://purl.obolibrary.org/obo/CDAO_0000089)
968
+ def self.CategoricalStateDatum
969
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000089')
970
+ end
971
+
972
+ # -- No comment or description provided. --
973
+ # (http://purl.obolibrary.org/obo/CDAO_0000090)
974
+ def self.DiscreteCharLikelihoodLengthType
975
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000090')
976
+ end
977
+
978
+ # -- No comment or description provided. --
979
+ # (http://purl.obolibrary.org/obo/CDAO_0000091)
980
+ def self.CharacterStateDomain
981
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000091')
982
+ end
983
+
984
+ # -- No comment or description provided. --
985
+ # (http://purl.obolibrary.org/obo/CDAO_0000092)
986
+ def self.CoordinateList
987
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000092')
988
+ end
989
+
990
+ # -- No comment or description provided. --
991
+ # (http://purl.obolibrary.org/obo/CDAO_0000093)
992
+ def self.GammaDistribution
993
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000093')
994
+ end
995
+
996
+ # -- No comment or description provided. --
997
+ # (http://purl.obolibrary.org/obo/CDAO_0000094)
998
+ def self.DesoxiRibonucleotideResidueCharacter
999
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000094')
1000
+ end
1001
+
1002
+ # -- No comment or description provided. --
1003
+ # (http://purl.obolibrary.org/obo/CDAO_0000095)
1004
+ def self.CoordinateRange
1005
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000095')
1006
+ end
1007
+
1008
+ # -- No comment or description provided. --
1009
+ # (http://purl.obolibrary.org/obo/CDAO_0000096)
1010
+ def self.ReticulateEvolution
1011
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000096')
1012
+ end
1013
+
1014
+ # -- No comment or description provided. --
1015
+ # (http://purl.obolibrary.org/obo/CDAO_0000097)
1016
+ def self.hereditaryChange
1017
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000097')
1018
+ end
1019
+
1020
+ # -- No comment or description provided. --
1021
+ # (http://purl.obolibrary.org/obo/CDAO_0000098)
1022
+ def self.CharacterStateDatum
1023
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000098')
1024
+ end
1025
+
1026
+ # -- No comment or description provided. --
1027
+ # (http://purl.obolibrary.org/obo/CDAO_0000099)
1028
+ def self.Edge
1029
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000099')
1030
+ end
1031
+
1032
+ # -- No comment or description provided. --
1033
+ # (http://purl.obolibrary.org/obo/CDAO_0000100)
1034
+ def self.DiscreteCharacterLengthType
1035
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000100')
1036
+ end
1037
+
1038
+ # -- No comment or description provided. --
1039
+ # (http://purl.obolibrary.org/obo/CDAO_0000101)
1040
+ def self.EdgeAnnotation
1041
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000101')
1042
+ end
1043
+
1044
+ # -- No comment or description provided. --
1045
+ # (http://purl.obolibrary.org/obo/CDAO_0000102)
1046
+ def self.FullyResolvedRootedTree
1047
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000102')
1048
+ end
1049
+
1050
+ # -- No comment or description provided. --
1051
+ # (http://purl.obolibrary.org/obo/CDAO_0000103)
1052
+ def self.GrafenLengthType
1053
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000103')
1054
+ end
1055
+
1056
+ # -- No comment or description provided. --
1057
+ # (http://purl.obolibrary.org/obo/CDAO_0000104)
1058
+ def self.CoordinateSystem
1059
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000104')
1060
+ end
1061
+
1062
+ # -- No comment or description provided. --
1063
+ # (http://purl.obolibrary.org/obo/CDAO_0000105)
1064
+ def self.GenBankDataMatrix
1065
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000105')
1066
+ end
1067
+
1068
+ # -- No comment or description provided. --
1069
+ # (http://purl.obolibrary.org/obo/CDAO_0000107)
1070
+ def self.DataMatrixFormat
1071
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000107')
1072
+ end
1073
+
1074
+ # -- No comment or description provided. --
1075
+ # (http://purl.obolibrary.org/obo/CDAO_0000108)
1076
+ def self.TerminalNode
1077
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000108')
1078
+ end
1079
+
1080
+ # -- No comment or description provided. --
1081
+ # (http://purl.obolibrary.org/obo/CDAO_0000109)
1082
+ def self.RibonucleotideResidueCharacter
1083
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000109')
1084
+ end
1085
+
1086
+ # -- No comment or description provided. --
1087
+ # (http://purl.obolibrary.org/obo/CDAO_0000110)
1088
+ def self.Tree
1089
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000110')
1090
+ end
1091
+
1092
+ # -- No comment or description provided. --
1093
+ # (http://purl.obolibrary.org/obo/CDAO_0000111)
1094
+ def self.CategoricalCharacter
1095
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000111')
1096
+ end
1097
+
1098
+ # -- No comment or description provided. --
1099
+ # (http://purl.obolibrary.org/obo/CDAO_0000112)
1100
+ def self.AminoAcidResidueStateDatum
1101
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000112')
1102
+ end
1103
+
1104
+ # -- No comment or description provided. --
1105
+ # (http://purl.obolibrary.org/obo/CDAO_0000113)
1106
+ def self.PHYLIPDataMatrix
1107
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000113')
1108
+ end
1109
+
1110
+ # -- No comment or description provided. --
1111
+ # (http://purl.obolibrary.org/obo/CDAO_0000114)
1112
+ def self.ContinuousCharLikelihoodLengthType
1113
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000114')
1114
+ end
1115
+
1116
+ # -- No comment or description provided. --
1117
+ # (http://purl.obolibrary.org/obo/CDAO_0000115)
1118
+ def self.MolecularCharacter
1119
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000115')
1120
+ end
1121
+
1122
+ # -- No comment or description provided. --
1123
+ # (http://purl.obolibrary.org/obo/CDAO_0000116)
1124
+ def self.hereditaryPersistance
1125
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000116')
1126
+ end
1127
+
1128
+ # -- No comment or description provided. --
1129
+ # (http://purl.obolibrary.org/obo/CDAO_0000117)
1130
+ def self.SetOfCharacters
1131
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000117')
1132
+ end
1133
+
1134
+ # -- No comment or description provided. --
1135
+ # (http://purl.obolibrary.org/obo/CDAO_0000118)
1136
+ def self.SetOfThings
1137
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000118')
1138
+ end
1139
+
1140
+ # -- No comment or description provided. --
1141
+ # (http://purl.obolibrary.org/obo/CDAO_0000120)
1142
+ def self.Sequence
1143
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000120')
1144
+ end
1145
+
1146
+ # -- No comment or description provided. --
1147
+ # (http://purl.obolibrary.org/obo/CDAO_0000121)
1148
+ def self.speciation
1149
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000121')
1150
+ end
1151
+
1152
+ # -- No comment or description provided. --
1153
+ # (http://purl.obolibrary.org/obo/CDAO_0000122)
1154
+ def self.cladogenesis
1155
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000122')
1156
+ end
1157
+
1158
+ # -- No comment or description provided. --
1159
+ # (http://purl.obolibrary.org/obo/CDAO_0000124)
1160
+ def self.Bifurcation
1161
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000124')
1162
+ end
1163
+
1164
+ # -- No comment or description provided. --
1165
+ # (http://purl.obolibrary.org/obo/CDAO_0000125)
1166
+ def self.DiscreteCharBayesianLengthType
1167
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000125')
1168
+ end
1169
+
1170
+ # -- No comment or description provided. --
1171
+ # (http://purl.obolibrary.org/obo/CDAO_0000126)
1172
+ def self.TaxonomicLink
1173
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000126')
1174
+ end
1175
+
1176
+ # -- No comment or description provided. --
1177
+ # (http://purl.obolibrary.org/obo/CDAO_0000127)
1178
+ def self.MonophyleticGroup
1179
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000127')
1180
+ end
1181
+
1182
+ # -- No comment or description provided. --
1183
+ # (http://purl.obolibrary.org/obo/CDAO_0000128)
1184
+ def self.molecularRecombination
1185
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000128')
1186
+ end
1187
+
1188
+ # -- No comment or description provided. --
1189
+ # (http://purl.obolibrary.org/obo/CDAO_0000129)
1190
+ def self.HolophyleticGroup
1191
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000129')
1192
+ end
1193
+
1194
+ # -- No comment or description provided. --
1195
+ # (http://purl.obolibrary.org/obo/CDAO_0000130)
1196
+ def self.FullyResolvedTree
1197
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000130')
1198
+ end
1199
+
1200
+ # -- No comment or description provided. --
1201
+ # (http://purl.obolibrary.org/obo/CDAO_0000131)
1202
+ def self.AminoAcidResidueCharacter
1203
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000131')
1204
+ end
1205
+
1206
+ # -- No comment or description provided. --
1207
+ # (http://purl.obolibrary.org/obo/CDAO_0000132)
1208
+ def self.recombination
1209
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000132')
1210
+ end
1211
+
1212
+ # -- No comment or description provided. --
1213
+ # (http://purl.obolibrary.org/obo/CDAO_0000133)
1214
+ def self.DesoxiRibonucleotideResidue
1215
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000133')
1216
+ end
1217
+
1218
+ # -- No comment or description provided. --
1219
+ # (http://purl.obolibrary.org/obo/CDAO_0000134)
1220
+ def self.RootedSubtree
1221
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000134')
1222
+ end
1223
+
1224
+ # -- No comment or description provided. --
1225
+ # (http://purl.obolibrary.org/obo/CDAO_0000136)
1226
+ def self.CompoundStateDatum
1227
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000136')
1228
+ end
1229
+
1230
+ # -- No comment or description provided. --
1231
+ # (http://purl.obolibrary.org/obo/CDAO_0000137)
1232
+ def self.GapCost
1233
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000137')
1234
+ end
1235
+
1236
+ # -- No comment or description provided. --
1237
+ # (http://purl.obolibrary.org/obo/CDAO_0000138)
1238
+ def self.TU
1239
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000138')
1240
+ end
1241
+
1242
+ # -- No comment or description provided. --
1243
+ # (http://purl.obolibrary.org/obo/CDAO_0000139)
1244
+ def self.DirectedEdge
1245
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000139')
1246
+ end
1247
+
1248
+ # -- No comment or description provided. --
1249
+ # (http://purl.obolibrary.org/obo/CDAO_0000140)
1250
+ def self.Node
1251
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000140')
1252
+ end
1253
+
1254
+ # -- No comment or description provided. --
1255
+ # (http://purl.obolibrary.org/obo/CDAO_0000141)
1256
+ def self.ContinuousCharDistanceLengthType
1257
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000141')
1258
+ end
1259
+
1260
+ # -- No comment or description provided. --
1261
+ # (http://purl.obolibrary.org/obo/CDAO_0000220)
1262
+ def self.dA
1263
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000220')
1264
+ end
1265
+
1266
+ # -- No comment or description provided. --
1267
+ # (http://purl.obolibrary.org/obo/CDAO_0000221)
1268
+ def self.absent
1269
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000221')
1270
+ end
1271
+
1272
+ # -- No comment or description provided. --
1273
+ # (http://purl.obolibrary.org/obo/CDAO_0000222)
1274
+ def self.unknown
1275
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000222')
1276
+ end
1277
+
1278
+ # -- No comment or description provided. --
1279
+ # (http://purl.obolibrary.org/obo/CDAO_0000223)
1280
+ def self.gap
1281
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000223')
1282
+ end
1283
+
1284
+ # -- No comment or description provided. --
1285
+ # (http://purl.obolibrary.org/obo/CDAO_0000224)
1286
+ def self.dG
1287
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000224')
1288
+ end
1289
+
1290
+ # -- No comment or description provided. --
1291
+ # (http://purl.obolibrary.org/obo/CDAO_0000225)
1292
+ def self.rU
1293
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000225')
1294
+ end
1295
+
1296
+ # -- No comment or description provided. --
1297
+ # (http://purl.obolibrary.org/obo/CDAO_0000226)
1298
+ def self.dC
1299
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000226')
1300
+ end
1301
+
1302
+ # -- No comment or description provided. --
1303
+ # (http://purl.obolibrary.org/obo/CDAO_0000227)
1304
+ def self.dT
1305
+ return RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000227')
1306
+ end
1307
+
1308
+ # Determines whether the given URI is an object property.
1309
+ #
1310
+ # +uri+:: URI that is tested for being an object property
1311
+ def self.is_object_property?(uri)
1312
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000142') then
1313
+ return true
1314
+ end
1315
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000143') then
1316
+ return true
1317
+ end
1318
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000144') then
1319
+ return true
1320
+ end
1321
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000145') then
1322
+ return true
1323
+ end
1324
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000146') then
1325
+ return true
1326
+ end
1327
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000147') then
1328
+ return true
1329
+ end
1330
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000148') then
1331
+ return true
1332
+ end
1333
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000149') then
1334
+ return true
1335
+ end
1336
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000150') then
1337
+ return true
1338
+ end
1339
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000151') then
1340
+ return true
1341
+ end
1342
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000152') then
1343
+ return true
1344
+ end
1345
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000153') then
1346
+ return true
1347
+ end
1348
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000154') then
1349
+ return true
1350
+ end
1351
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000155') then
1352
+ return true
1353
+ end
1354
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000156') then
1355
+ return true
1356
+ end
1357
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000157') then
1358
+ return true
1359
+ end
1360
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000158') then
1361
+ return true
1362
+ end
1363
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000159') then
1364
+ return true
1365
+ end
1366
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000160') then
1367
+ return true
1368
+ end
1369
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000161') then
1370
+ return true
1371
+ end
1372
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000162') then
1373
+ return true
1374
+ end
1375
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000163') then
1376
+ return true
1377
+ end
1378
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000164') then
1379
+ return true
1380
+ end
1381
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000165') then
1382
+ return true
1383
+ end
1384
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000166') then
1385
+ return true
1386
+ end
1387
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000167') then
1388
+ return true
1389
+ end
1390
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000168') then
1391
+ return true
1392
+ end
1393
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000169') then
1394
+ return true
1395
+ end
1396
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000170') then
1397
+ return true
1398
+ end
1399
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000171') then
1400
+ return true
1401
+ end
1402
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000172') then
1403
+ return true
1404
+ end
1405
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000173') then
1406
+ return true
1407
+ end
1408
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000174') then
1409
+ return true
1410
+ end
1411
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000175') then
1412
+ return true
1413
+ end
1414
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000176') then
1415
+ return true
1416
+ end
1417
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000177') then
1418
+ return true
1419
+ end
1420
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') then
1421
+ return true
1422
+ end
1423
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000179') then
1424
+ return true
1425
+ end
1426
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000180') then
1427
+ return true
1428
+ end
1429
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000181') then
1430
+ return true
1431
+ end
1432
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000182') then
1433
+ return true
1434
+ end
1435
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000183') then
1436
+ return true
1437
+ end
1438
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000184') then
1439
+ return true
1440
+ end
1441
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000185') then
1442
+ return true
1443
+ end
1444
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000186') then
1445
+ return true
1446
+ end
1447
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000187') then
1448
+ return true
1449
+ end
1450
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000188') then
1451
+ return true
1452
+ end
1453
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000189') then
1454
+ return true
1455
+ end
1456
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000190') then
1457
+ return true
1458
+ end
1459
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000191') then
1460
+ return true
1461
+ end
1462
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000192') then
1463
+ return true
1464
+ end
1465
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000193') then
1466
+ return true
1467
+ end
1468
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000194') then
1469
+ return true
1470
+ end
1471
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000195') then
1472
+ return true
1473
+ end
1474
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000196') then
1475
+ return true
1476
+ end
1477
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000197') then
1478
+ return true
1479
+ end
1480
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000198') then
1481
+ return true
1482
+ end
1483
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000199') then
1484
+ return true
1485
+ end
1486
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000200') then
1487
+ return true
1488
+ end
1489
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000201') then
1490
+ return true
1491
+ end
1492
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000202') then
1493
+ return true
1494
+ end
1495
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000203') then
1496
+ return true
1497
+ end
1498
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000204') then
1499
+ return true
1500
+ end
1501
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000205') then
1502
+ return true
1503
+ end
1504
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000206') then
1505
+ return true
1506
+ end
1507
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000207') then
1508
+ return true
1509
+ end
1510
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000208') then
1511
+ return true
1512
+ end
1513
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000209') then
1514
+ return true
1515
+ end
1516
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000210') then
1517
+ return true
1518
+ end
1519
+ return false
1520
+ end
1521
+
1522
+ # Determines whether the given URI is a datatype property.
1523
+ #
1524
+ # +uri+:: URI that is tested for being a datatype property
1525
+ def self.is_datatype_property?(uri)
1526
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000211') then
1527
+ return true
1528
+ end
1529
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000212') then
1530
+ return true
1531
+ end
1532
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000213') then
1533
+ return true
1534
+ end
1535
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000214') then
1536
+ return true
1537
+ end
1538
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000215') then
1539
+ return true
1540
+ end
1541
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000216') then
1542
+ return true
1543
+ end
1544
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000217') then
1545
+ return true
1546
+ end
1547
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000218') then
1548
+ return true
1549
+ end
1550
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000219') then
1551
+ return true
1552
+ end
1553
+ return false
1554
+ end
1555
+
1556
+ # Determines whether the given URI is a class.
1557
+ #
1558
+ # +uri+:: URI that is tested for being a class
1559
+ def self.is_class?(uri)
1560
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000002') then
1561
+ return true
1562
+ end
1563
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000003') then
1564
+ return true
1565
+ end
1566
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000004') then
1567
+ return true
1568
+ end
1569
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000005') then
1570
+ return true
1571
+ end
1572
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000006') then
1573
+ return true
1574
+ end
1575
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000007') then
1576
+ return true
1577
+ end
1578
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000008') then
1579
+ return true
1580
+ end
1581
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000009') then
1582
+ return true
1583
+ end
1584
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000010') then
1585
+ return true
1586
+ end
1587
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000011') then
1588
+ return true
1589
+ end
1590
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000012') then
1591
+ return true
1592
+ end
1593
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000013') then
1594
+ return true
1595
+ end
1596
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000014') then
1597
+ return true
1598
+ end
1599
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000015') then
1600
+ return true
1601
+ end
1602
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000016') then
1603
+ return true
1604
+ end
1605
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000017') then
1606
+ return true
1607
+ end
1608
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000018') then
1609
+ return true
1610
+ end
1611
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000019') then
1612
+ return true
1613
+ end
1614
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000020') then
1615
+ return true
1616
+ end
1617
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000021') then
1618
+ return true
1619
+ end
1620
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000022') then
1621
+ return true
1622
+ end
1623
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000023') then
1624
+ return true
1625
+ end
1626
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000024') then
1627
+ return true
1628
+ end
1629
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000025') then
1630
+ return true
1631
+ end
1632
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000026') then
1633
+ return true
1634
+ end
1635
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000027') then
1636
+ return true
1637
+ end
1638
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000029') then
1639
+ return true
1640
+ end
1641
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000030') then
1642
+ return true
1643
+ end
1644
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000031') then
1645
+ return true
1646
+ end
1647
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000032') then
1648
+ return true
1649
+ end
1650
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000033') then
1651
+ return true
1652
+ end
1653
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000034') then
1654
+ return true
1655
+ end
1656
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000035') then
1657
+ return true
1658
+ end
1659
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000039') then
1660
+ return true
1661
+ end
1662
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000040') then
1663
+ return true
1664
+ end
1665
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000041') then
1666
+ return true
1667
+ end
1668
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000042') then
1669
+ return true
1670
+ end
1671
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000043') then
1672
+ return true
1673
+ end
1674
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000044') then
1675
+ return true
1676
+ end
1677
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000045') then
1678
+ return true
1679
+ end
1680
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000046') then
1681
+ return true
1682
+ end
1683
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000047') then
1684
+ return true
1685
+ end
1686
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000048') then
1687
+ return true
1688
+ end
1689
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000049') then
1690
+ return true
1691
+ end
1692
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000050') then
1693
+ return true
1694
+ end
1695
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000051') then
1696
+ return true
1697
+ end
1698
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000052') then
1699
+ return true
1700
+ end
1701
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000053') then
1702
+ return true
1703
+ end
1704
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000055') then
1705
+ return true
1706
+ end
1707
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000056') then
1708
+ return true
1709
+ end
1710
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000057') then
1711
+ return true
1712
+ end
1713
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000058') then
1714
+ return true
1715
+ end
1716
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000059') then
1717
+ return true
1718
+ end
1719
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000060') then
1720
+ return true
1721
+ end
1722
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000061') then
1723
+ return true
1724
+ end
1725
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000062') then
1726
+ return true
1727
+ end
1728
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000063') then
1729
+ return true
1730
+ end
1731
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000064') then
1732
+ return true
1733
+ end
1734
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000065') then
1735
+ return true
1736
+ end
1737
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000066') then
1738
+ return true
1739
+ end
1740
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000067') then
1741
+ return true
1742
+ end
1743
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000068') then
1744
+ return true
1745
+ end
1746
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000069') then
1747
+ return true
1748
+ end
1749
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000070') then
1750
+ return true
1751
+ end
1752
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000071') then
1753
+ return true
1754
+ end
1755
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000072') then
1756
+ return true
1757
+ end
1758
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000073') then
1759
+ return true
1760
+ end
1761
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000074') then
1762
+ return true
1763
+ end
1764
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000075') then
1765
+ return true
1766
+ end
1767
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000076') then
1768
+ return true
1769
+ end
1770
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000077') then
1771
+ return true
1772
+ end
1773
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000078') then
1774
+ return true
1775
+ end
1776
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000079') then
1777
+ return true
1778
+ end
1779
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000080') then
1780
+ return true
1781
+ end
1782
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000081') then
1783
+ return true
1784
+ end
1785
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000082') then
1786
+ return true
1787
+ end
1788
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000083') then
1789
+ return true
1790
+ end
1791
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000084') then
1792
+ return true
1793
+ end
1794
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000085') then
1795
+ return true
1796
+ end
1797
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000086') then
1798
+ return true
1799
+ end
1800
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000087') then
1801
+ return true
1802
+ end
1803
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000088') then
1804
+ return true
1805
+ end
1806
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000089') then
1807
+ return true
1808
+ end
1809
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000090') then
1810
+ return true
1811
+ end
1812
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000091') then
1813
+ return true
1814
+ end
1815
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000092') then
1816
+ return true
1817
+ end
1818
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000093') then
1819
+ return true
1820
+ end
1821
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000094') then
1822
+ return true
1823
+ end
1824
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000095') then
1825
+ return true
1826
+ end
1827
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000096') then
1828
+ return true
1829
+ end
1830
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000097') then
1831
+ return true
1832
+ end
1833
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000098') then
1834
+ return true
1835
+ end
1836
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000099') then
1837
+ return true
1838
+ end
1839
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000100') then
1840
+ return true
1841
+ end
1842
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000101') then
1843
+ return true
1844
+ end
1845
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000102') then
1846
+ return true
1847
+ end
1848
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000103') then
1849
+ return true
1850
+ end
1851
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000104') then
1852
+ return true
1853
+ end
1854
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000105') then
1855
+ return true
1856
+ end
1857
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000107') then
1858
+ return true
1859
+ end
1860
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000108') then
1861
+ return true
1862
+ end
1863
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000109') then
1864
+ return true
1865
+ end
1866
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000110') then
1867
+ return true
1868
+ end
1869
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000111') then
1870
+ return true
1871
+ end
1872
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000112') then
1873
+ return true
1874
+ end
1875
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000113') then
1876
+ return true
1877
+ end
1878
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000114') then
1879
+ return true
1880
+ end
1881
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000115') then
1882
+ return true
1883
+ end
1884
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000116') then
1885
+ return true
1886
+ end
1887
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000117') then
1888
+ return true
1889
+ end
1890
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000118') then
1891
+ return true
1892
+ end
1893
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000120') then
1894
+ return true
1895
+ end
1896
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000121') then
1897
+ return true
1898
+ end
1899
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000122') then
1900
+ return true
1901
+ end
1902
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000124') then
1903
+ return true
1904
+ end
1905
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000125') then
1906
+ return true
1907
+ end
1908
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000126') then
1909
+ return true
1910
+ end
1911
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000127') then
1912
+ return true
1913
+ end
1914
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000128') then
1915
+ return true
1916
+ end
1917
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000129') then
1918
+ return true
1919
+ end
1920
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000130') then
1921
+ return true
1922
+ end
1923
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000131') then
1924
+ return true
1925
+ end
1926
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000132') then
1927
+ return true
1928
+ end
1929
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000133') then
1930
+ return true
1931
+ end
1932
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000134') then
1933
+ return true
1934
+ end
1935
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000136') then
1936
+ return true
1937
+ end
1938
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000137') then
1939
+ return true
1940
+ end
1941
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000138') then
1942
+ return true
1943
+ end
1944
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000139') then
1945
+ return true
1946
+ end
1947
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000140') then
1948
+ return true
1949
+ end
1950
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000141') then
1951
+ return true
1952
+ end
1953
+ return false
1954
+ end
1955
+
1956
+ # Determines whether the given URI is a named individual.
1957
+ #
1958
+ # +uri+:: URI that is tested for being a named individual
1959
+ def self.is_named_individual?(uri)
1960
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000220') then
1961
+ return true
1962
+ end
1963
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000221') then
1964
+ return true
1965
+ end
1966
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000222') then
1967
+ return true
1968
+ end
1969
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000223') then
1970
+ return true
1971
+ end
1972
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000224') then
1973
+ return true
1974
+ end
1975
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000225') then
1976
+ return true
1977
+ end
1978
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000226') then
1979
+ return true
1980
+ end
1981
+ if uri == RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000227') then
1982
+ return true
1983
+ end
1984
+ return false
1985
+ end
1986
+
1987
+ # Returns only those URIs that fall under a designated parent URI.
1988
+ #
1989
+ # +uris+:: Set of URIs that are tested whether they have the given parent URI.
1990
+ # +parent+:: Parent URI.
1991
+ def self.with_parent(uris, parent)
1992
+ return uris.select { |uri| has_parent?(uri, parent) }
1993
+ end
1994
+
1995
+ # Recursively tries to determine the parent for a given URI.
1996
+ #
1997
+ # +uri+:: URI that is tested for whether it has the given parent URI.
1998
+ # +parent+:: Parent URI.
1999
+ def self.has_parent?(uri, parent)
2000
+ if @@parent_properties.has_key?(uri) then
2001
+ if @@parent_properties[uri] == parent then
2002
+ return true
2003
+ end
2004
+ return has_parent?(@@parent_properties[uri], parent)
2005
+ end
2006
+ return false
2007
+ end
2008
+
2009
+ private
2010
+ @@parent_properties = { RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000142') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000143') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000146') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000144') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000145') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000184') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000146') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000190') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000147') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000190') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000148') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000149') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000174') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000150') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000151') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000152') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000205') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000153') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000154') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000183') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000156') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000184') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000158') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000206') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000159') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000182') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000162') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000166') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000205') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000168') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000206') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000170') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000183') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000171') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000173') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000205') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000174') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000175') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000184') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000176') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000177') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000146') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000179') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000144') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000180') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000205') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000182') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000183') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000153') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000184') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000185') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000182') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000186') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000182') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000188') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000161') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000189') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000184') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000191') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000190') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000192') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000190') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000193') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000195') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000206') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000197') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000198') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000199') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000161') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000200') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000190') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000201') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000162') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000202') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000203') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000190') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000204') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000205') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000190') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000206') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000183') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000207') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000153') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000208') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000178') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000209') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000162') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000210') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000182') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000213') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000215') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000218') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000215') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000002') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000050') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000003') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000022') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000005') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000074') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000007') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000040') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000008') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000089') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000009') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000063') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000010') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000009') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000011') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000074') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000013') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000020') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000014') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000044') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000015') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000039') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000016') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000070') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000017') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000110') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000018') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000110') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000019') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000098') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000020') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000007') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000021') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000020') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000023') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000017') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000027') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000088') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000032') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000025') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000033') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000026') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000034') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000039') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000035') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000009') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000039') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000091') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000040') => 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RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000074') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000069') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000074') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000072') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000006') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000073') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000110') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000074') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000044') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000075') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000111') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000076') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000034') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000077') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000064') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000079') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000074') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000081') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000074') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000082') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000063') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000083') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000100') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000085') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000088') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000087') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000041') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000088') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000110') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000089') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000098') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000090') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000100') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000092') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000022') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000093') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000020') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000095') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000022') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000096') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000006') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000100') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000063') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000103') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000063') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000104') => RDF::URI.new('http://www.w3.org/2002/07/owl#Thing') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000105') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000107') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000107') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000025') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000108') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000140') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000110') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000006') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000111') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000071') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000112') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000050') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000113') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000107') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000114') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000009') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000115') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000111') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000121') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000064') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000122') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000064') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000125') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000100') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000126') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000066') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000127') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000006') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000128') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000132') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000129') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000127') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000130') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000110') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000132') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000087') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000133') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000034') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000134') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000070') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000136') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000089') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000137') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000007') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000138') => RDF::URI.new('http://www.w3.org/2002/07/owl#Thing') , RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000141') => RDF::URI.new('http://purl.obolibrary.org/obo/CDAO_0000009') }
2011
+
2012
+ end
2013
+
2014
+ end