biointerchange 0.2.2 → 1.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/Gemfile +1 -0
- data/README.md +269 -19
- data/VERSION +1 -1
- data/examples/bininda_emonds_mammals.new +1 -0
- data/examples/rdfization.rb +17 -0
- data/examples/tree1.new +1 -0
- data/examples/tree2.new +1 -0
- data/examples/vocabulary.rb +26 -5
- data/generators/javaify.rb +12 -18
- data/generators/make_supplement_releases.rb +2 -0
- data/generators/pythonify.rb +21 -8
- data/generators/rdfxml.rb +15 -1
- data/lib/biointerchange/cdao.rb +2014 -0
- data/lib/biointerchange/core.rb +70 -77
- data/lib/biointerchange/genomics/gff3_rdf_ntriples.rb +16 -0
- data/lib/biointerchange/genomics/gff3_reader.rb +18 -4
- data/lib/biointerchange/genomics/gvf_reader.rb +14 -0
- data/lib/biointerchange/phylogenetics/cdao_rdf_ntriples.rb +108 -0
- data/lib/biointerchange/phylogenetics/newick_reader.rb +81 -0
- data/lib/biointerchange/phylogenetics/tree_set.rb +50 -0
- data/lib/biointerchange/registry.rb +50 -8
- data/lib/biointerchange/so.rb +150 -0
- data/lib/biointerchange/textmining/pdfx_xml_reader.rb +21 -2
- data/lib/biointerchange/textmining/pubannos_json_reader.rb +24 -1
- data/lib/biointerchange/textmining/text_mining_rdf_ntriples.rb +9 -0
- data/lib/biointerchange/textmining/text_mining_reader.rb +5 -5
- data/spec/phylogenetics_spec.rb +79 -0
- data/supplemental/java/biointerchange/pom.xml +1 -1
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/CDAO.java +2602 -0
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/FALDO.java +30 -28
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GFF3O.java +136 -104
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GVF1O.java +367 -278
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SIO.java +4388 -3127
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SO.java +5970 -4351
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SOFA.java +733 -544
- data/supplemental/java/biointerchange/src/test/java/org/biointerchange/AppTest.java +3 -1
- data/supplemental/python/biointerchange/cdao.py +2021 -0
- data/supplemental/python/biointerchange/faldo.py +37 -38
- data/supplemental/python/biointerchange/gff3o.py +156 -157
- data/supplemental/python/biointerchange/goxref.py +172 -172
- data/supplemental/python/biointerchange/gvf1o.py +428 -429
- data/supplemental/python/biointerchange/sio.py +3133 -3134
- data/supplemental/python/biointerchange/so.py +6626 -6527
- data/supplemental/python/biointerchange/sofa.py +790 -791
- data/supplemental/python/example.py +23 -5
- data/supplemental/python/setup.py +2 -2
- data/web/about.html +1 -0
- data/web/api.html +223 -15
- data/web/biointerchange.js +27 -6
- data/web/cli.html +8 -3
- data/web/index.html +6 -2
- data/web/ontologies.html +3 -0
- data/web/service/rdfizer.fcgi +7 -15
- data/web/webservices.html +6 -2
- metadata +30 -3
@@ -0,0 +1,2021 @@
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import rdflib
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from rdflib import Namespace
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class CDAO:
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@classmethod
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def has_Character(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000142)
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"""
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return cls._namespace_CDAO('CDAO_0000142')
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@classmethod
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def belongs_to_Edge_as_Child(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000143)
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"""
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return cls._namespace_CDAO('CDAO_0000143')
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@classmethod
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def has_Ancestor(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000144)
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"""
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return cls._namespace_CDAO('CDAO_0000144')
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@classmethod
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def has_Nucleotide_State(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000145)
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"""
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return cls._namespace_CDAO('CDAO_0000145')
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@classmethod
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def belongs_to_Edge(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000146)
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"""
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return cls._namespace_CDAO('CDAO_0000146')
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@classmethod
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def belongs_to_Character_State_Data_Matrix(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000147)
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"""
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return cls._namespace_CDAO('CDAO_0000147')
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@classmethod
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def has_Root(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000148)
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"""
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return cls._namespace_CDAO('CDAO_0000148')
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@classmethod
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def has_Child(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000149)
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"""
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return cls._namespace_CDAO('CDAO_0000149')
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@classmethod
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def has_First_Coordinate_Item(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000150)
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"""
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return cls._namespace_CDAO('CDAO_0000150')
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@classmethod
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def has_Coordinate(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000151)
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"""
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return cls._namespace_CDAO('CDAO_0000151')
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@classmethod
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def belongs_to_Continuous_Character(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000152)
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"""
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return cls._namespace_CDAO('CDAO_0000152')
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@classmethod
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def has_Datum(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000153)
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"""
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return cls._namespace_CDAO('CDAO_0000153')
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@classmethod
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def has_Standard_Datum(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000154)
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"""
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return cls._namespace_CDAO('CDAO_0000154')
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@classmethod
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def subtree_of(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000155)
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"""
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return cls._namespace_CDAO('CDAO_0000155')
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@classmethod
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def has_Amino_Acid_State(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000156)
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"""
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return cls._namespace_CDAO('CDAO_0000156')
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@classmethod
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def is_annotation_of(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000157)
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"""
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return cls._namespace_CDAO('CDAO_0000157')
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@classmethod
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def has_RNA_Datum(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000158)
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"""
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return cls._namespace_CDAO('CDAO_0000158')
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@classmethod
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def has_Left_State(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000159)
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"""
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return cls._namespace_CDAO('CDAO_0000159')
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@classmethod
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def precedes(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000160)
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"""
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return cls._namespace_CDAO('CDAO_0000160')
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@classmethod
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def exclude(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000161)
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"""
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return cls._namespace_CDAO('CDAO_0000161')
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@classmethod
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def has_Node(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000162)
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"""
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return cls._namespace_CDAO('CDAO_0000162')
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@classmethod
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def nca_node_of(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000163)
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"""
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return cls._namespace_CDAO('CDAO_0000163')
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@classmethod
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def has_External_Reference(cls):
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"""Associates a TU to some external taxonomy reference.
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(cls, http://purl.obolibrary.org/obo/CDAO_0000164)
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"""
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return cls._namespace_CDAO('CDAO_0000164')
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@classmethod
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def has_Coordinate_System(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000165)
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"""
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return cls._namespace_CDAO('CDAO_0000165')
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@classmethod
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def belongs_to_Nucleotide_Character(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000166)
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"""
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return cls._namespace_CDAO('CDAO_0000166')
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@classmethod
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def connects_to(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000167)
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"""
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return cls._namespace_CDAO('CDAO_0000167')
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@classmethod
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def has_Amino_Acid_Datum(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000168)
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"""
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return cls._namespace_CDAO('CDAO_0000168')
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@classmethod
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def hereditary_change_of(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000169)
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"""
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return cls._namespace_CDAO('CDAO_0000169')
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@classmethod
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def has_Compound_Datum(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000170)
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"""
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return cls._namespace_CDAO('CDAO_0000170')
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@classmethod
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def has_Descendants(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000171)
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"""
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return cls._namespace_CDAO('CDAO_0000171')
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@classmethod
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def reconciliation_of(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000172)
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"""
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return cls._namespace_CDAO('CDAO_0000172')
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@classmethod
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def belongs_to_Amino_Acid_Character(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000173)
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"""
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return cls._namespace_CDAO('CDAO_0000173')
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@classmethod
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def has_Descendant(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000174)
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"""
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return cls._namespace_CDAO('CDAO_0000174')
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@classmethod
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def has_Continuous_State(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000175)
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"""
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return cls._namespace_CDAO('CDAO_0000175')
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@classmethod
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def has_Type(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000176)
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"""
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return cls._namespace_CDAO('CDAO_0000176')
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@classmethod
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def belongs_to_Edge_as_Parent(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000177)
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"""
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return cls._namespace_CDAO('CDAO_0000177')
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@classmethod
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def has(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000178)
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"""
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return cls._namespace_CDAO('CDAO_0000178')
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@classmethod
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def has_Parent(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000179)
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"""
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return cls._namespace_CDAO('CDAO_0000179')
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@classmethod
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def belongs_to_Compound_Character(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000180)
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"""
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return cls._namespace_CDAO('CDAO_0000180')
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@classmethod
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def homologous_to(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000181)
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"""
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return cls._namespace_CDAO('CDAO_0000181')
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@classmethod
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def has_Change_Component(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000182)
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"""
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return cls._namespace_CDAO('CDAO_0000182')
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@classmethod
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def has_Categorical_Datum(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000183)
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"""
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return cls._namespace_CDAO('CDAO_0000183')
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@classmethod
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def has_State(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000184)
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"""
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return cls._namespace_CDAO('CDAO_0000184')
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@classmethod
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def has_Left_Node(cls):
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"""-- No comment or description provided. --
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|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000185)
|
313
|
+
"""
|
314
|
+
return cls._namespace_CDAO('CDAO_0000185')
|
315
|
+
|
316
|
+
@classmethod
|
317
|
+
def has_Right_State(cls):
|
318
|
+
"""-- No comment or description provided. --
|
319
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000186)
|
320
|
+
"""
|
321
|
+
return cls._namespace_CDAO('CDAO_0000186')
|
322
|
+
|
323
|
+
@classmethod
|
324
|
+
def represents_TU(cls):
|
325
|
+
"""-- No comment or description provided. --
|
326
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000187)
|
327
|
+
"""
|
328
|
+
return cls._namespace_CDAO('CDAO_0000187')
|
329
|
+
|
330
|
+
@classmethod
|
331
|
+
def exclude_Node(cls):
|
332
|
+
"""-- No comment or description provided. --
|
333
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000188)
|
334
|
+
"""
|
335
|
+
return cls._namespace_CDAO('CDAO_0000188')
|
336
|
+
|
337
|
+
@classmethod
|
338
|
+
def has_Compound_State(cls):
|
339
|
+
"""-- No comment or description provided. --
|
340
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000189)
|
341
|
+
"""
|
342
|
+
return cls._namespace_CDAO('CDAO_0000189')
|
343
|
+
|
344
|
+
@classmethod
|
345
|
+
def belongs_to(cls):
|
346
|
+
"""-- No comment or description provided. --
|
347
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000190)
|
348
|
+
"""
|
349
|
+
return cls._namespace_CDAO('CDAO_0000190')
|
350
|
+
|
351
|
+
@classmethod
|
352
|
+
def belongs_to_TU(cls):
|
353
|
+
"""-- No comment or description provided. --
|
354
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000191)
|
355
|
+
"""
|
356
|
+
return cls._namespace_CDAO('CDAO_0000191')
|
357
|
+
|
358
|
+
@classmethod
|
359
|
+
def belongs_to_Network(cls):
|
360
|
+
"""-- No comment or description provided. --
|
361
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000192)
|
362
|
+
"""
|
363
|
+
return cls._namespace_CDAO('CDAO_0000192')
|
364
|
+
|
365
|
+
@classmethod
|
366
|
+
def has_Annotation(cls):
|
367
|
+
"""-- No comment or description provided. --
|
368
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000193)
|
369
|
+
"""
|
370
|
+
return cls._namespace_CDAO('CDAO_0000193')
|
371
|
+
|
372
|
+
@classmethod
|
373
|
+
def part_of(cls):
|
374
|
+
"""-- No comment or description provided. --
|
375
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000194)
|
376
|
+
"""
|
377
|
+
return cls._namespace_CDAO('CDAO_0000194')
|
378
|
+
|
379
|
+
@classmethod
|
380
|
+
def has_Nucleotide_Datum(cls):
|
381
|
+
"""-- No comment or description provided. --
|
382
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000195)
|
383
|
+
"""
|
384
|
+
return cls._namespace_CDAO('CDAO_0000195')
|
385
|
+
|
386
|
+
@classmethod
|
387
|
+
def represented_by_Node(cls):
|
388
|
+
"""-- No comment or description provided. --
|
389
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000196)
|
390
|
+
"""
|
391
|
+
return cls._namespace_CDAO('CDAO_0000196')
|
392
|
+
|
393
|
+
@classmethod
|
394
|
+
def has_Remaining_Coordinate_List(cls):
|
395
|
+
"""-- No comment or description provided. --
|
396
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000197)
|
397
|
+
"""
|
398
|
+
return cls._namespace_CDAO('CDAO_0000197')
|
399
|
+
|
400
|
+
@classmethod
|
401
|
+
def has_Element(cls):
|
402
|
+
"""-- No comment or description provided. --
|
403
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000198)
|
404
|
+
"""
|
405
|
+
return cls._namespace_CDAO('CDAO_0000198')
|
406
|
+
|
407
|
+
@classmethod
|
408
|
+
def exclude_Subtree(cls):
|
409
|
+
"""-- No comment or description provided. --
|
410
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000199)
|
411
|
+
"""
|
412
|
+
return cls._namespace_CDAO('CDAO_0000199')
|
413
|
+
|
414
|
+
@classmethod
|
415
|
+
def belongs_to_Tree(cls):
|
416
|
+
"""-- No comment or description provided. --
|
417
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000200)
|
418
|
+
"""
|
419
|
+
return cls._namespace_CDAO('CDAO_0000200')
|
420
|
+
|
421
|
+
@classmethod
|
422
|
+
def has_Parent_Node(cls):
|
423
|
+
"""-- No comment or description provided. --
|
424
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000201)
|
425
|
+
"""
|
426
|
+
return cls._namespace_CDAO('CDAO_0000201')
|
427
|
+
|
428
|
+
@classmethod
|
429
|
+
def has_Lineage_node(cls):
|
430
|
+
"""-- No comment or description provided. --
|
431
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000202)
|
432
|
+
"""
|
433
|
+
return cls._namespace_CDAO('CDAO_0000202')
|
434
|
+
|
435
|
+
@classmethod
|
436
|
+
def belongs_to_Tree_as_Root(cls):
|
437
|
+
"""-- No comment or description provided. --
|
438
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000203)
|
439
|
+
"""
|
440
|
+
return cls._namespace_CDAO('CDAO_0000203')
|
441
|
+
|
442
|
+
@classmethod
|
443
|
+
def has_Hereditary_Change(cls):
|
444
|
+
"""-- No comment or description provided. --
|
445
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000204)
|
446
|
+
"""
|
447
|
+
return cls._namespace_CDAO('CDAO_0000204')
|
448
|
+
|
449
|
+
@classmethod
|
450
|
+
def belongs_to_Character(cls):
|
451
|
+
"""-- No comment or description provided. --
|
452
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000205)
|
453
|
+
"""
|
454
|
+
return cls._namespace_CDAO('CDAO_0000205')
|
455
|
+
|
456
|
+
@classmethod
|
457
|
+
def has_Molecular_Datum(cls):
|
458
|
+
"""-- No comment or description provided. --
|
459
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000206)
|
460
|
+
"""
|
461
|
+
return cls._namespace_CDAO('CDAO_0000206')
|
462
|
+
|
463
|
+
@classmethod
|
464
|
+
def has_Continuous_Datum(cls):
|
465
|
+
"""-- No comment or description provided. --
|
466
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000207)
|
467
|
+
"""
|
468
|
+
return cls._namespace_CDAO('CDAO_0000207')
|
469
|
+
|
470
|
+
@classmethod
|
471
|
+
def has_TU(cls):
|
472
|
+
"""-- No comment or description provided. --
|
473
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000208)
|
474
|
+
"""
|
475
|
+
return cls._namespace_CDAO('CDAO_0000208')
|
476
|
+
|
477
|
+
@classmethod
|
478
|
+
def has_Child_Node(cls):
|
479
|
+
"""-- No comment or description provided. --
|
480
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000209)
|
481
|
+
"""
|
482
|
+
return cls._namespace_CDAO('CDAO_0000209')
|
483
|
+
|
484
|
+
@classmethod
|
485
|
+
def has_Right_Node(cls):
|
486
|
+
"""-- No comment or description provided. --
|
487
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000210)
|
488
|
+
"""
|
489
|
+
return cls._namespace_CDAO('CDAO_0000210')
|
490
|
+
|
491
|
+
@classmethod
|
492
|
+
def has_Precision(cls):
|
493
|
+
"""-- No comment or description provided. --
|
494
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000211)
|
495
|
+
"""
|
496
|
+
return cls._namespace_CDAO('CDAO_0000211')
|
497
|
+
|
498
|
+
@classmethod
|
499
|
+
def has_Point_Coordinate_Value(cls):
|
500
|
+
"""-- No comment or description provided. --
|
501
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000212)
|
502
|
+
"""
|
503
|
+
return cls._namespace_CDAO('CDAO_0000212')
|
504
|
+
|
505
|
+
@classmethod
|
506
|
+
def has_Int_Value(cls):
|
507
|
+
"""-- No comment or description provided. --
|
508
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000213)
|
509
|
+
"""
|
510
|
+
return cls._namespace_CDAO('CDAO_0000213')
|
511
|
+
|
512
|
+
@classmethod
|
513
|
+
def has_Support_Value(cls):
|
514
|
+
"""-- No comment or description provided. --
|
515
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000214)
|
516
|
+
"""
|
517
|
+
return cls._namespace_CDAO('CDAO_0000214')
|
518
|
+
|
519
|
+
@classmethod
|
520
|
+
def has_Value(cls):
|
521
|
+
"""-- No comment or description provided. --
|
522
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000215)
|
523
|
+
"""
|
524
|
+
return cls._namespace_CDAO('CDAO_0000215')
|
525
|
+
|
526
|
+
@classmethod
|
527
|
+
def has_Uncertainty_Factor(cls):
|
528
|
+
"""-- No comment or description provided. --
|
529
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000216)
|
530
|
+
"""
|
531
|
+
return cls._namespace_CDAO('CDAO_0000216')
|
532
|
+
|
533
|
+
@classmethod
|
534
|
+
def has_Range_End_Value(cls):
|
535
|
+
"""-- No comment or description provided. --
|
536
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000217)
|
537
|
+
"""
|
538
|
+
return cls._namespace_CDAO('CDAO_0000217')
|
539
|
+
|
540
|
+
@classmethod
|
541
|
+
def has_Float_Value(cls):
|
542
|
+
"""-- No comment or description provided. --
|
543
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000218)
|
544
|
+
"""
|
545
|
+
return cls._namespace_CDAO('CDAO_0000218')
|
546
|
+
|
547
|
+
@classmethod
|
548
|
+
def has_Range_Start_Value(cls):
|
549
|
+
"""-- No comment or description provided. --
|
550
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000219)
|
551
|
+
"""
|
552
|
+
return cls._namespace_CDAO('CDAO_0000219')
|
553
|
+
|
554
|
+
@classmethod
|
555
|
+
def DesoxiRibonucleotideResidueStateDatum(cls):
|
556
|
+
"""-- No comment or description provided. --
|
557
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000002)
|
558
|
+
"""
|
559
|
+
return cls._namespace_CDAO('CDAO_0000002')
|
560
|
+
|
561
|
+
@classmethod
|
562
|
+
def CoordinatePoint(cls):
|
563
|
+
"""-- No comment or description provided. --
|
564
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000003)
|
565
|
+
"""
|
566
|
+
return cls._namespace_CDAO('CDAO_0000003')
|
567
|
+
|
568
|
+
@classmethod
|
569
|
+
def Lineage(cls):
|
570
|
+
"""-- No comment or description provided. --
|
571
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000004)
|
572
|
+
"""
|
573
|
+
return cls._namespace_CDAO('CDAO_0000004')
|
574
|
+
|
575
|
+
@classmethod
|
576
|
+
def Phylo4Tree(cls):
|
577
|
+
"""-- No comment or description provided. --
|
578
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000005)
|
579
|
+
"""
|
580
|
+
return cls._namespace_CDAO('CDAO_0000005')
|
581
|
+
|
582
|
+
@classmethod
|
583
|
+
def Network(cls):
|
584
|
+
"""-- No comment or description provided. --
|
585
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000006)
|
586
|
+
"""
|
587
|
+
return cls._namespace_CDAO('CDAO_0000006')
|
588
|
+
|
589
|
+
@classmethod
|
590
|
+
def ModelDescription(cls):
|
591
|
+
"""This is a non-computible description of a model, not the fully specified mathematical model, which typically relates the probability of a transformation to various parameters.
|
592
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000007)
|
593
|
+
"""
|
594
|
+
return cls._namespace_CDAO('CDAO_0000007')
|
595
|
+
|
596
|
+
@classmethod
|
597
|
+
def StandardStateDatum(cls):
|
598
|
+
"""-- No comment or description provided. --
|
599
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000008)
|
600
|
+
"""
|
601
|
+
return cls._namespace_CDAO('CDAO_0000008')
|
602
|
+
|
603
|
+
@classmethod
|
604
|
+
def ContinuousCharacterLengthType(cls):
|
605
|
+
"""-- No comment or description provided. --
|
606
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000009)
|
607
|
+
"""
|
608
|
+
return cls._namespace_CDAO('CDAO_0000009')
|
609
|
+
|
610
|
+
@classmethod
|
611
|
+
def ContinuousCharBayesianLengthType(cls):
|
612
|
+
"""-- No comment or description provided. --
|
613
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000010)
|
614
|
+
"""
|
615
|
+
return cls._namespace_CDAO('CDAO_0000010')
|
616
|
+
|
617
|
+
@classmethod
|
618
|
+
def NEXUSTreeBlock(cls):
|
619
|
+
"""-- No comment or description provided. --
|
620
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000011)
|
621
|
+
"""
|
622
|
+
return cls._namespace_CDAO('CDAO_0000011')
|
623
|
+
|
624
|
+
@classmethod
|
625
|
+
def RootedTree(cls):
|
626
|
+
"""-- No comment or description provided. --
|
627
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000012)
|
628
|
+
"""
|
629
|
+
return cls._namespace_CDAO('CDAO_0000012')
|
630
|
+
|
631
|
+
@classmethod
|
632
|
+
def Kimura2Parameters(cls):
|
633
|
+
"""-- No comment or description provided. --
|
634
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000013)
|
635
|
+
"""
|
636
|
+
return cls._namespace_CDAO('CDAO_0000013')
|
637
|
+
|
638
|
+
@classmethod
|
639
|
+
def TreeProcedure(cls):
|
640
|
+
"""-- No comment or description provided. --
|
641
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000014)
|
642
|
+
"""
|
643
|
+
return cls._namespace_CDAO('CDAO_0000014')
|
644
|
+
|
645
|
+
@classmethod
|
646
|
+
def Generic_State(cls):
|
647
|
+
"""This class should be renamed. These are not generic states but non-concrete states including gap, unknown and missing.
|
648
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000015)
|
649
|
+
"""
|
650
|
+
return cls._namespace_CDAO('CDAO_0000015')
|
651
|
+
|
652
|
+
@classmethod
|
653
|
+
def UnrootedSubtree(cls):
|
654
|
+
"""-- No comment or description provided. --
|
655
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000016)
|
656
|
+
"""
|
657
|
+
return cls._namespace_CDAO('CDAO_0000016')
|
658
|
+
|
659
|
+
@classmethod
|
660
|
+
def UnresolvedTree(cls):
|
661
|
+
"""-- No comment or description provided. --
|
662
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000017)
|
663
|
+
"""
|
664
|
+
return cls._namespace_CDAO('CDAO_0000017')
|
665
|
+
|
666
|
+
@classmethod
|
667
|
+
def BifurcatingTree(cls):
|
668
|
+
"""-- No comment or description provided. --
|
669
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000018)
|
670
|
+
"""
|
671
|
+
return cls._namespace_CDAO('CDAO_0000018')
|
672
|
+
|
673
|
+
@classmethod
|
674
|
+
def ContinuousStateDatum(cls):
|
675
|
+
"""-- No comment or description provided. --
|
676
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000019)
|
677
|
+
"""
|
678
|
+
return cls._namespace_CDAO('CDAO_0000019')
|
679
|
+
|
680
|
+
@classmethod
|
681
|
+
def SubstitutionModel(cls):
|
682
|
+
"""-- No comment or description provided. --
|
683
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000020)
|
684
|
+
"""
|
685
|
+
return cls._namespace_CDAO('CDAO_0000020')
|
686
|
+
|
687
|
+
@classmethod
|
688
|
+
def JukesKantor(cls):
|
689
|
+
"""-- No comment or description provided. --
|
690
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000021)
|
691
|
+
"""
|
692
|
+
return cls._namespace_CDAO('CDAO_0000021')
|
693
|
+
|
694
|
+
@classmethod
|
695
|
+
def DatumCoordinate(cls):
|
696
|
+
"""drawing from seqloc categories from NCBI at http://www.ncbi.nlm.nih.gov/IEB/ToolBox/SDKDOCS/SEQLOC.HTML#_Seq-loc:_Locations_on
|
697
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000022)
|
698
|
+
"""
|
699
|
+
return cls._namespace_CDAO('CDAO_0000022')
|
700
|
+
|
701
|
+
@classmethod
|
702
|
+
def UnresolvedRootedTree(cls):
|
703
|
+
"""-- No comment or description provided. --
|
704
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000023)
|
705
|
+
"""
|
706
|
+
return cls._namespace_CDAO('CDAO_0000023')
|
707
|
+
|
708
|
+
@classmethod
|
709
|
+
def Branch(cls):
|
710
|
+
"""-- No comment or description provided. --
|
711
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000024)
|
712
|
+
"""
|
713
|
+
return cls._namespace_CDAO('CDAO_0000024')
|
714
|
+
|
715
|
+
@classmethod
|
716
|
+
def CharacterStateDataMatrixAnnotation(cls):
|
717
|
+
"""-- No comment or description provided. --
|
718
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000025)
|
719
|
+
"""
|
720
|
+
return cls._namespace_CDAO('CDAO_0000025')
|
721
|
+
|
722
|
+
@classmethod
|
723
|
+
def AncestralNode(cls):
|
724
|
+
"""-- No comment or description provided. --
|
725
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000026)
|
726
|
+
"""
|
727
|
+
return cls._namespace_CDAO('CDAO_0000026')
|
728
|
+
|
729
|
+
@classmethod
|
730
|
+
def UnresolvedUnrootedTree(cls):
|
731
|
+
"""-- No comment or description provided. --
|
732
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000027)
|
733
|
+
"""
|
734
|
+
return cls._namespace_CDAO('CDAO_0000027')
|
735
|
+
|
736
|
+
@classmethod
|
737
|
+
def UncertainStateDomain(cls):
|
738
|
+
"""-- No comment or description provided. --
|
739
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000029)
|
740
|
+
"""
|
741
|
+
return cls._namespace_CDAO('CDAO_0000029')
|
742
|
+
|
743
|
+
@classmethod
|
744
|
+
def ReconcileTree(cls):
|
745
|
+
"""-- No comment or description provided. --
|
746
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000030)
|
747
|
+
"""
|
748
|
+
return cls._namespace_CDAO('CDAO_0000030')
|
749
|
+
|
750
|
+
@classmethod
|
751
|
+
def Continuous(cls):
|
752
|
+
"""-- No comment or description provided. --
|
753
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000031)
|
754
|
+
"""
|
755
|
+
return cls._namespace_CDAO('CDAO_0000031')
|
756
|
+
|
757
|
+
@classmethod
|
758
|
+
def AlignmentProcedure(cls):
|
759
|
+
"""-- No comment or description provided. --
|
760
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000032)
|
761
|
+
"""
|
762
|
+
return cls._namespace_CDAO('CDAO_0000032')
|
763
|
+
|
764
|
+
@classmethod
|
765
|
+
def Dichotomy(cls):
|
766
|
+
"""-- No comment or description provided. --
|
767
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000033)
|
768
|
+
"""
|
769
|
+
return cls._namespace_CDAO('CDAO_0000033')
|
770
|
+
|
771
|
+
@classmethod
|
772
|
+
def Molecular(cls):
|
773
|
+
"""-- No comment or description provided. --
|
774
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000034)
|
775
|
+
"""
|
776
|
+
return cls._namespace_CDAO('CDAO_0000034')
|
777
|
+
|
778
|
+
@classmethod
|
779
|
+
def ContinuousCharParsimonyLengthType(cls):
|
780
|
+
"""-- No comment or description provided. --
|
781
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000035)
|
782
|
+
"""
|
783
|
+
return cls._namespace_CDAO('CDAO_0000035')
|
784
|
+
|
785
|
+
@classmethod
|
786
|
+
def Categorical(cls):
|
787
|
+
"""-- No comment or description provided. --
|
788
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000039)
|
789
|
+
"""
|
790
|
+
return cls._namespace_CDAO('CDAO_0000039')
|
791
|
+
|
792
|
+
@classmethod
|
793
|
+
def CDAOAnnotation(cls):
|
794
|
+
"""Its possible that this base class should be discarded and that annotations should inherit from an imported base class if one exists.
|
795
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000040)
|
796
|
+
"""
|
797
|
+
return cls._namespace_CDAO('CDAO_0000040')
|
798
|
+
|
799
|
+
@classmethod
|
800
|
+
def originationEvent(cls):
|
801
|
+
"""-- No comment or description provided. --
|
802
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000041)
|
803
|
+
"""
|
804
|
+
return cls._namespace_CDAO('CDAO_0000041')
|
805
|
+
|
806
|
+
@classmethod
|
807
|
+
def Polytomy(cls):
|
808
|
+
"""-- No comment or description provided. --
|
809
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000042)
|
810
|
+
"""
|
811
|
+
return cls._namespace_CDAO('CDAO_0000042')
|
812
|
+
|
813
|
+
@classmethod
|
814
|
+
def PolymorphicStateDomain(cls):
|
815
|
+
"""-- No comment or description provided. --
|
816
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000043)
|
817
|
+
"""
|
818
|
+
return cls._namespace_CDAO('CDAO_0000043')
|
819
|
+
|
820
|
+
@classmethod
|
821
|
+
def TreeAnnotation(cls):
|
822
|
+
"""-- No comment or description provided. --
|
823
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000044)
|
824
|
+
"""
|
825
|
+
return cls._namespace_CDAO('CDAO_0000044')
|
826
|
+
|
827
|
+
@classmethod
|
828
|
+
def Standard(cls):
|
829
|
+
"""-- No comment or description provided. --
|
830
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000045)
|
831
|
+
"""
|
832
|
+
return cls._namespace_CDAO('CDAO_0000045')
|
833
|
+
|
834
|
+
@classmethod
|
835
|
+
def EdgeLength(cls):
|
836
|
+
"""Its possible that this should not be classed as an 'annotation' since it contains data rather than meta-data.
|
837
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000046)
|
838
|
+
"""
|
839
|
+
return cls._namespace_CDAO('CDAO_0000046')
|
840
|
+
|
841
|
+
@classmethod
|
842
|
+
def RibonucleotideResidue(cls):
|
843
|
+
"""-- No comment or description provided. --
|
844
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000047)
|
845
|
+
"""
|
846
|
+
return cls._namespace_CDAO('CDAO_0000047')
|
847
|
+
|
848
|
+
@classmethod
|
849
|
+
def Clade(cls):
|
850
|
+
"""-- No comment or description provided. --
|
851
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000048)
|
852
|
+
"""
|
853
|
+
return cls._namespace_CDAO('CDAO_0000048')
|
854
|
+
|
855
|
+
@classmethod
|
856
|
+
def DiscreteCharParsimonyLengthType(cls):
|
857
|
+
"""-- No comment or description provided. --
|
858
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000049)
|
859
|
+
"""
|
860
|
+
return cls._namespace_CDAO('CDAO_0000049')
|
861
|
+
|
862
|
+
@classmethod
|
863
|
+
def MolecularStateDatum(cls):
|
864
|
+
"""-- No comment or description provided. --
|
865
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000050)
|
866
|
+
"""
|
867
|
+
return cls._namespace_CDAO('CDAO_0000050')
|
868
|
+
|
869
|
+
@classmethod
|
870
|
+
def PolyphyleticGroup(cls):
|
871
|
+
"""-- No comment or description provided. --
|
872
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000051)
|
873
|
+
"""
|
874
|
+
return cls._namespace_CDAO('CDAO_0000051')
|
875
|
+
|
876
|
+
@classmethod
|
877
|
+
def NexusDataBlock(cls):
|
878
|
+
"""-- No comment or description provided. --
|
879
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000052)
|
880
|
+
"""
|
881
|
+
return cls._namespace_CDAO('CDAO_0000052')
|
882
|
+
|
883
|
+
@classmethod
|
884
|
+
def BranchingNode(cls):
|
885
|
+
"""-- No comment or description provided. --
|
886
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000053)
|
887
|
+
"""
|
888
|
+
return cls._namespace_CDAO('CDAO_0000053')
|
889
|
+
|
890
|
+
@classmethod
|
891
|
+
def Compound(cls):
|
892
|
+
"""-- No comment or description provided. --
|
893
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000055)
|
894
|
+
"""
|
895
|
+
return cls._namespace_CDAO('CDAO_0000055')
|
896
|
+
|
897
|
+
@classmethod
|
898
|
+
def CharacterStateDataMatrix(cls):
|
899
|
+
"""-- No comment or description provided. --
|
900
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000056)
|
901
|
+
"""
|
902
|
+
return cls._namespace_CDAO('CDAO_0000056')
|
903
|
+
|
904
|
+
@classmethod
|
905
|
+
def RibonucleotideResidueStateDatum(cls):
|
906
|
+
"""-- No comment or description provided. --
|
907
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000057)
|
908
|
+
"""
|
909
|
+
return cls._namespace_CDAO('CDAO_0000057')
|
910
|
+
|
911
|
+
@classmethod
|
912
|
+
def TimeCalibratedLengthType(cls):
|
913
|
+
"""-- No comment or description provided. --
|
914
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000058)
|
915
|
+
"""
|
916
|
+
return cls._namespace_CDAO('CDAO_0000058')
|
917
|
+
|
918
|
+
@classmethod
|
919
|
+
def SetOfNodes(cls):
|
920
|
+
"""-- No comment or description provided. --
|
921
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000059)
|
922
|
+
"""
|
923
|
+
return cls._namespace_CDAO('CDAO_0000059')
|
924
|
+
|
925
|
+
@classmethod
|
926
|
+
def MRCANode(cls):
|
927
|
+
"""-- No comment or description provided. --
|
928
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000060)
|
929
|
+
"""
|
930
|
+
return cls._namespace_CDAO('CDAO_0000060')
|
931
|
+
|
932
|
+
@classmethod
|
933
|
+
def FASTADataMatrix(cls):
|
934
|
+
"""-- No comment or description provided. --
|
935
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000061)
|
936
|
+
"""
|
937
|
+
return cls._namespace_CDAO('CDAO_0000061')
|
938
|
+
|
939
|
+
@classmethod
|
940
|
+
def evolutionaryTransition(cls):
|
941
|
+
"""-- No comment or description provided. --
|
942
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000062)
|
943
|
+
"""
|
944
|
+
return cls._namespace_CDAO('CDAO_0000062')
|
945
|
+
|
946
|
+
@classmethod
|
947
|
+
def EdgeLengthType(cls):
|
948
|
+
"""-- No comment or description provided. --
|
949
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000063)
|
950
|
+
"""
|
951
|
+
return cls._namespace_CDAO('CDAO_0000063')
|
952
|
+
|
953
|
+
@classmethod
|
954
|
+
def cladogeneticChange(cls):
|
955
|
+
"""-- No comment or description provided. --
|
956
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000064)
|
957
|
+
"""
|
958
|
+
return cls._namespace_CDAO('CDAO_0000064')
|
959
|
+
|
960
|
+
@classmethod
|
961
|
+
def anageneticChange(cls):
|
962
|
+
"""-- No comment or description provided. --
|
963
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000065)
|
964
|
+
"""
|
965
|
+
return cls._namespace_CDAO('CDAO_0000065')
|
966
|
+
|
967
|
+
@classmethod
|
968
|
+
def TUAnnotation(cls):
|
969
|
+
"""-- No comment or description provided. --
|
970
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000066)
|
971
|
+
"""
|
972
|
+
return cls._namespace_CDAO('CDAO_0000066')
|
973
|
+
|
974
|
+
@classmethod
|
975
|
+
def PhyloTree(cls):
|
976
|
+
"""-- No comment or description provided. --
|
977
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000067)
|
978
|
+
"""
|
979
|
+
return cls._namespace_CDAO('CDAO_0000067')
|
980
|
+
|
981
|
+
@classmethod
|
982
|
+
def ContinuousCharacter(cls):
|
983
|
+
"""-- No comment or description provided. --
|
984
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000068)
|
985
|
+
"""
|
986
|
+
return cls._namespace_CDAO('CDAO_0000068')
|
987
|
+
|
988
|
+
@classmethod
|
989
|
+
def PHYLIPTree(cls):
|
990
|
+
"""-- No comment or description provided. --
|
991
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000069)
|
992
|
+
"""
|
993
|
+
return cls._namespace_CDAO('CDAO_0000069')
|
994
|
+
|
995
|
+
@classmethod
|
996
|
+
def Subtree(cls):
|
997
|
+
"""-- No comment or description provided. --
|
998
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000070)
|
999
|
+
"""
|
1000
|
+
return cls._namespace_CDAO('CDAO_0000070')
|
1001
|
+
|
1002
|
+
@classmethod
|
1003
|
+
def Character(cls):
|
1004
|
+
"""Traits shown to be relevant for phylogenetic classification
|
1005
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000071)
|
1006
|
+
"""
|
1007
|
+
return cls._namespace_CDAO('CDAO_0000071')
|
1008
|
+
|
1009
|
+
@classmethod
|
1010
|
+
def GalledTree(cls):
|
1011
|
+
"""-- No comment or description provided. --
|
1012
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000072)
|
1013
|
+
"""
|
1014
|
+
return cls._namespace_CDAO('CDAO_0000072')
|
1015
|
+
|
1016
|
+
@classmethod
|
1017
|
+
def SpeciesTree(cls):
|
1018
|
+
"""-- No comment or description provided. --
|
1019
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000073)
|
1020
|
+
"""
|
1021
|
+
return cls._namespace_CDAO('CDAO_0000073')
|
1022
|
+
|
1023
|
+
@classmethod
|
1024
|
+
def TreeFormat(cls):
|
1025
|
+
"""-- No comment or description provided. --
|
1026
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000074)
|
1027
|
+
"""
|
1028
|
+
return cls._namespace_CDAO('CDAO_0000074')
|
1029
|
+
|
1030
|
+
@classmethod
|
1031
|
+
def StandardCharacter(cls):
|
1032
|
+
"""-- No comment or description provided. --
|
1033
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000075)
|
1034
|
+
"""
|
1035
|
+
return cls._namespace_CDAO('CDAO_0000075')
|
1036
|
+
|
1037
|
+
@classmethod
|
1038
|
+
def AminoAcidResidue(cls):
|
1039
|
+
"""-- No comment or description provided. --
|
1040
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000076)
|
1041
|
+
"""
|
1042
|
+
return cls._namespace_CDAO('CDAO_0000076')
|
1043
|
+
|
1044
|
+
@classmethod
|
1045
|
+
def geneDuplication(cls):
|
1046
|
+
"""-- No comment or description provided. --
|
1047
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000077)
|
1048
|
+
"""
|
1049
|
+
return cls._namespace_CDAO('CDAO_0000077')
|
1050
|
+
|
1051
|
+
@classmethod
|
1052
|
+
def CompoundCharacter(cls):
|
1053
|
+
"""-- No comment or description provided. --
|
1054
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000078)
|
1055
|
+
"""
|
1056
|
+
return cls._namespace_CDAO('CDAO_0000078')
|
1057
|
+
|
1058
|
+
@classmethod
|
1059
|
+
def SIMMAPTree(cls):
|
1060
|
+
"""-- No comment or description provided. --
|
1061
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000079)
|
1062
|
+
"""
|
1063
|
+
return cls._namespace_CDAO('CDAO_0000079')
|
1064
|
+
|
1065
|
+
@classmethod
|
1066
|
+
def CommonAncestralNode(cls):
|
1067
|
+
"""-- No comment or description provided. --
|
1068
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000080)
|
1069
|
+
"""
|
1070
|
+
return cls._namespace_CDAO('CDAO_0000080')
|
1071
|
+
|
1072
|
+
@classmethod
|
1073
|
+
def NewickTree(cls):
|
1074
|
+
"""-- No comment or description provided. --
|
1075
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000081)
|
1076
|
+
"""
|
1077
|
+
return cls._namespace_CDAO('CDAO_0000081')
|
1078
|
+
|
1079
|
+
@classmethod
|
1080
|
+
def TimeProportionalLengthType(cls):
|
1081
|
+
"""-- No comment or description provided. --
|
1082
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000082)
|
1083
|
+
"""
|
1084
|
+
return cls._namespace_CDAO('CDAO_0000082')
|
1085
|
+
|
1086
|
+
@classmethod
|
1087
|
+
def DiscreteCharDistanceLengthType(cls):
|
1088
|
+
"""-- No comment or description provided. --
|
1089
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000083)
|
1090
|
+
"""
|
1091
|
+
return cls._namespace_CDAO('CDAO_0000083')
|
1092
|
+
|
1093
|
+
@classmethod
|
1094
|
+
def StarTree(cls):
|
1095
|
+
"""-- No comment or description provided. --
|
1096
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000084)
|
1097
|
+
"""
|
1098
|
+
return cls._namespace_CDAO('CDAO_0000084')
|
1099
|
+
|
1100
|
+
@classmethod
|
1101
|
+
def FullyResolvedUnrootedTree(cls):
|
1102
|
+
"""-- No comment or description provided. --
|
1103
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000085)
|
1104
|
+
"""
|
1105
|
+
return cls._namespace_CDAO('CDAO_0000085')
|
1106
|
+
|
1107
|
+
@classmethod
|
1108
|
+
def ParaphyleticGroup(cls):
|
1109
|
+
"""-- No comment or description provided. --
|
1110
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000086)
|
1111
|
+
"""
|
1112
|
+
return cls._namespace_CDAO('CDAO_0000086')
|
1113
|
+
|
1114
|
+
@classmethod
|
1115
|
+
def geneticEvent(cls):
|
1116
|
+
"""-- No comment or description provided. --
|
1117
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000087)
|
1118
|
+
"""
|
1119
|
+
return cls._namespace_CDAO('CDAO_0000087')
|
1120
|
+
|
1121
|
+
@classmethod
|
1122
|
+
def UnrootedTree(cls):
|
1123
|
+
"""-- No comment or description provided. --
|
1124
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000088)
|
1125
|
+
"""
|
1126
|
+
return cls._namespace_CDAO('CDAO_0000088')
|
1127
|
+
|
1128
|
+
@classmethod
|
1129
|
+
def CategoricalStateDatum(cls):
|
1130
|
+
"""-- No comment or description provided. --
|
1131
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000089)
|
1132
|
+
"""
|
1133
|
+
return cls._namespace_CDAO('CDAO_0000089')
|
1134
|
+
|
1135
|
+
@classmethod
|
1136
|
+
def DiscreteCharLikelihoodLengthType(cls):
|
1137
|
+
"""-- No comment or description provided. --
|
1138
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000090)
|
1139
|
+
"""
|
1140
|
+
return cls._namespace_CDAO('CDAO_0000090')
|
1141
|
+
|
1142
|
+
@classmethod
|
1143
|
+
def CharacterStateDomain(cls):
|
1144
|
+
"""-- No comment or description provided. --
|
1145
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000091)
|
1146
|
+
"""
|
1147
|
+
return cls._namespace_CDAO('CDAO_0000091')
|
1148
|
+
|
1149
|
+
@classmethod
|
1150
|
+
def CoordinateList(cls):
|
1151
|
+
"""-- No comment or description provided. --
|
1152
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000092)
|
1153
|
+
"""
|
1154
|
+
return cls._namespace_CDAO('CDAO_0000092')
|
1155
|
+
|
1156
|
+
@classmethod
|
1157
|
+
def GammaDistribution(cls):
|
1158
|
+
"""-- No comment or description provided. --
|
1159
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000093)
|
1160
|
+
"""
|
1161
|
+
return cls._namespace_CDAO('CDAO_0000093')
|
1162
|
+
|
1163
|
+
@classmethod
|
1164
|
+
def DesoxiRibonucleotideResidueCharacter(cls):
|
1165
|
+
"""-- No comment or description provided. --
|
1166
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000094)
|
1167
|
+
"""
|
1168
|
+
return cls._namespace_CDAO('CDAO_0000094')
|
1169
|
+
|
1170
|
+
@classmethod
|
1171
|
+
def CoordinateRange(cls):
|
1172
|
+
"""-- No comment or description provided. --
|
1173
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000095)
|
1174
|
+
"""
|
1175
|
+
return cls._namespace_CDAO('CDAO_0000095')
|
1176
|
+
|
1177
|
+
@classmethod
|
1178
|
+
def ReticulateEvolution(cls):
|
1179
|
+
"""-- No comment or description provided. --
|
1180
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000096)
|
1181
|
+
"""
|
1182
|
+
return cls._namespace_CDAO('CDAO_0000096')
|
1183
|
+
|
1184
|
+
@classmethod
|
1185
|
+
def hereditaryChange(cls):
|
1186
|
+
"""-- No comment or description provided. --
|
1187
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000097)
|
1188
|
+
"""
|
1189
|
+
return cls._namespace_CDAO('CDAO_0000097')
|
1190
|
+
|
1191
|
+
@classmethod
|
1192
|
+
def CharacterStateDatum(cls):
|
1193
|
+
"""-- No comment or description provided. --
|
1194
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000098)
|
1195
|
+
"""
|
1196
|
+
return cls._namespace_CDAO('CDAO_0000098')
|
1197
|
+
|
1198
|
+
@classmethod
|
1199
|
+
def Edge(cls):
|
1200
|
+
"""-- No comment or description provided. --
|
1201
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000099)
|
1202
|
+
"""
|
1203
|
+
return cls._namespace_CDAO('CDAO_0000099')
|
1204
|
+
|
1205
|
+
@classmethod
|
1206
|
+
def DiscreteCharacterLengthType(cls):
|
1207
|
+
"""-- No comment or description provided. --
|
1208
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000100)
|
1209
|
+
"""
|
1210
|
+
return cls._namespace_CDAO('CDAO_0000100')
|
1211
|
+
|
1212
|
+
@classmethod
|
1213
|
+
def EdgeAnnotation(cls):
|
1214
|
+
"""-- No comment or description provided. --
|
1215
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000101)
|
1216
|
+
"""
|
1217
|
+
return cls._namespace_CDAO('CDAO_0000101')
|
1218
|
+
|
1219
|
+
@classmethod
|
1220
|
+
def FullyResolvedRootedTree(cls):
|
1221
|
+
"""-- No comment or description provided. --
|
1222
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000102)
|
1223
|
+
"""
|
1224
|
+
return cls._namespace_CDAO('CDAO_0000102')
|
1225
|
+
|
1226
|
+
@classmethod
|
1227
|
+
def GrafenLengthType(cls):
|
1228
|
+
"""-- No comment or description provided. --
|
1229
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000103)
|
1230
|
+
"""
|
1231
|
+
return cls._namespace_CDAO('CDAO_0000103')
|
1232
|
+
|
1233
|
+
@classmethod
|
1234
|
+
def CoordinateSystem(cls):
|
1235
|
+
"""-- No comment or description provided. --
|
1236
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000104)
|
1237
|
+
"""
|
1238
|
+
return cls._namespace_CDAO('CDAO_0000104')
|
1239
|
+
|
1240
|
+
@classmethod
|
1241
|
+
def GenBankDataMatrix(cls):
|
1242
|
+
"""-- No comment or description provided. --
|
1243
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000105)
|
1244
|
+
"""
|
1245
|
+
return cls._namespace_CDAO('CDAO_0000105')
|
1246
|
+
|
1247
|
+
@classmethod
|
1248
|
+
def DataMatrixFormat(cls):
|
1249
|
+
"""-- No comment or description provided. --
|
1250
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000107)
|
1251
|
+
"""
|
1252
|
+
return cls._namespace_CDAO('CDAO_0000107')
|
1253
|
+
|
1254
|
+
@classmethod
|
1255
|
+
def TerminalNode(cls):
|
1256
|
+
"""-- No comment or description provided. --
|
1257
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000108)
|
1258
|
+
"""
|
1259
|
+
return cls._namespace_CDAO('CDAO_0000108')
|
1260
|
+
|
1261
|
+
@classmethod
|
1262
|
+
def RibonucleotideResidueCharacter(cls):
|
1263
|
+
"""-- No comment or description provided. --
|
1264
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000109)
|
1265
|
+
"""
|
1266
|
+
return cls._namespace_CDAO('CDAO_0000109')
|
1267
|
+
|
1268
|
+
@classmethod
|
1269
|
+
def Tree(cls):
|
1270
|
+
"""-- No comment or description provided. --
|
1271
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000110)
|
1272
|
+
"""
|
1273
|
+
return cls._namespace_CDAO('CDAO_0000110')
|
1274
|
+
|
1275
|
+
@classmethod
|
1276
|
+
def CategoricalCharacter(cls):
|
1277
|
+
"""-- No comment or description provided. --
|
1278
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000111)
|
1279
|
+
"""
|
1280
|
+
return cls._namespace_CDAO('CDAO_0000111')
|
1281
|
+
|
1282
|
+
@classmethod
|
1283
|
+
def AminoAcidResidueStateDatum(cls):
|
1284
|
+
"""-- No comment or description provided. --
|
1285
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000112)
|
1286
|
+
"""
|
1287
|
+
return cls._namespace_CDAO('CDAO_0000112')
|
1288
|
+
|
1289
|
+
@classmethod
|
1290
|
+
def PHYLIPDataMatrix(cls):
|
1291
|
+
"""-- No comment or description provided. --
|
1292
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000113)
|
1293
|
+
"""
|
1294
|
+
return cls._namespace_CDAO('CDAO_0000113')
|
1295
|
+
|
1296
|
+
@classmethod
|
1297
|
+
def ContinuousCharLikelihoodLengthType(cls):
|
1298
|
+
"""-- No comment or description provided. --
|
1299
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000114)
|
1300
|
+
"""
|
1301
|
+
return cls._namespace_CDAO('CDAO_0000114')
|
1302
|
+
|
1303
|
+
@classmethod
|
1304
|
+
def MolecularCharacter(cls):
|
1305
|
+
"""-- No comment or description provided. --
|
1306
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000115)
|
1307
|
+
"""
|
1308
|
+
return cls._namespace_CDAO('CDAO_0000115')
|
1309
|
+
|
1310
|
+
@classmethod
|
1311
|
+
def hereditaryPersistance(cls):
|
1312
|
+
"""-- No comment or description provided. --
|
1313
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000116)
|
1314
|
+
"""
|
1315
|
+
return cls._namespace_CDAO('CDAO_0000116')
|
1316
|
+
|
1317
|
+
@classmethod
|
1318
|
+
def SetOfCharacters(cls):
|
1319
|
+
"""-- No comment or description provided. --
|
1320
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000117)
|
1321
|
+
"""
|
1322
|
+
return cls._namespace_CDAO('CDAO_0000117')
|
1323
|
+
|
1324
|
+
@classmethod
|
1325
|
+
def SetOfThings(cls):
|
1326
|
+
"""-- No comment or description provided. --
|
1327
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000118)
|
1328
|
+
"""
|
1329
|
+
return cls._namespace_CDAO('CDAO_0000118')
|
1330
|
+
|
1331
|
+
@classmethod
|
1332
|
+
def Sequence(cls):
|
1333
|
+
"""-- No comment or description provided. --
|
1334
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000120)
|
1335
|
+
"""
|
1336
|
+
return cls._namespace_CDAO('CDAO_0000120')
|
1337
|
+
|
1338
|
+
@classmethod
|
1339
|
+
def speciation(cls):
|
1340
|
+
"""-- No comment or description provided. --
|
1341
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000121)
|
1342
|
+
"""
|
1343
|
+
return cls._namespace_CDAO('CDAO_0000121')
|
1344
|
+
|
1345
|
+
@classmethod
|
1346
|
+
def cladogenesis(cls):
|
1347
|
+
"""-- No comment or description provided. --
|
1348
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000122)
|
1349
|
+
"""
|
1350
|
+
return cls._namespace_CDAO('CDAO_0000122')
|
1351
|
+
|
1352
|
+
@classmethod
|
1353
|
+
def Bifurcation(cls):
|
1354
|
+
"""-- No comment or description provided. --
|
1355
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000124)
|
1356
|
+
"""
|
1357
|
+
return cls._namespace_CDAO('CDAO_0000124')
|
1358
|
+
|
1359
|
+
@classmethod
|
1360
|
+
def DiscreteCharBayesianLengthType(cls):
|
1361
|
+
"""-- No comment or description provided. --
|
1362
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000125)
|
1363
|
+
"""
|
1364
|
+
return cls._namespace_CDAO('CDAO_0000125')
|
1365
|
+
|
1366
|
+
@classmethod
|
1367
|
+
def TaxonomicLink(cls):
|
1368
|
+
"""-- No comment or description provided. --
|
1369
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000126)
|
1370
|
+
"""
|
1371
|
+
return cls._namespace_CDAO('CDAO_0000126')
|
1372
|
+
|
1373
|
+
@classmethod
|
1374
|
+
def MonophyleticGroup(cls):
|
1375
|
+
"""-- No comment or description provided. --
|
1376
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000127)
|
1377
|
+
"""
|
1378
|
+
return cls._namespace_CDAO('CDAO_0000127')
|
1379
|
+
|
1380
|
+
@classmethod
|
1381
|
+
def molecularRecombination(cls):
|
1382
|
+
"""-- No comment or description provided. --
|
1383
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000128)
|
1384
|
+
"""
|
1385
|
+
return cls._namespace_CDAO('CDAO_0000128')
|
1386
|
+
|
1387
|
+
@classmethod
|
1388
|
+
def HolophyleticGroup(cls):
|
1389
|
+
"""-- No comment or description provided. --
|
1390
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000129)
|
1391
|
+
"""
|
1392
|
+
return cls._namespace_CDAO('CDAO_0000129')
|
1393
|
+
|
1394
|
+
@classmethod
|
1395
|
+
def FullyResolvedTree(cls):
|
1396
|
+
"""-- No comment or description provided. --
|
1397
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000130)
|
1398
|
+
"""
|
1399
|
+
return cls._namespace_CDAO('CDAO_0000130')
|
1400
|
+
|
1401
|
+
@classmethod
|
1402
|
+
def AminoAcidResidueCharacter(cls):
|
1403
|
+
"""-- No comment or description provided. --
|
1404
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000131)
|
1405
|
+
"""
|
1406
|
+
return cls._namespace_CDAO('CDAO_0000131')
|
1407
|
+
|
1408
|
+
@classmethod
|
1409
|
+
def recombination(cls):
|
1410
|
+
"""-- No comment or description provided. --
|
1411
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000132)
|
1412
|
+
"""
|
1413
|
+
return cls._namespace_CDAO('CDAO_0000132')
|
1414
|
+
|
1415
|
+
@classmethod
|
1416
|
+
def DesoxiRibonucleotideResidue(cls):
|
1417
|
+
"""-- No comment or description provided. --
|
1418
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000133)
|
1419
|
+
"""
|
1420
|
+
return cls._namespace_CDAO('CDAO_0000133')
|
1421
|
+
|
1422
|
+
@classmethod
|
1423
|
+
def RootedSubtree(cls):
|
1424
|
+
"""-- No comment or description provided. --
|
1425
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000134)
|
1426
|
+
"""
|
1427
|
+
return cls._namespace_CDAO('CDAO_0000134')
|
1428
|
+
|
1429
|
+
@classmethod
|
1430
|
+
def CompoundStateDatum(cls):
|
1431
|
+
"""-- No comment or description provided. --
|
1432
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000136)
|
1433
|
+
"""
|
1434
|
+
return cls._namespace_CDAO('CDAO_0000136')
|
1435
|
+
|
1436
|
+
@classmethod
|
1437
|
+
def GapCost(cls):
|
1438
|
+
"""-- No comment or description provided. --
|
1439
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000137)
|
1440
|
+
"""
|
1441
|
+
return cls._namespace_CDAO('CDAO_0000137')
|
1442
|
+
|
1443
|
+
@classmethod
|
1444
|
+
def TU(cls):
|
1445
|
+
"""-- No comment or description provided. --
|
1446
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000138)
|
1447
|
+
"""
|
1448
|
+
return cls._namespace_CDAO('CDAO_0000138')
|
1449
|
+
|
1450
|
+
@classmethod
|
1451
|
+
def DirectedEdge(cls):
|
1452
|
+
"""-- No comment or description provided. --
|
1453
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000139)
|
1454
|
+
"""
|
1455
|
+
return cls._namespace_CDAO('CDAO_0000139')
|
1456
|
+
|
1457
|
+
@classmethod
|
1458
|
+
def Node(cls):
|
1459
|
+
"""-- No comment or description provided. --
|
1460
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000140)
|
1461
|
+
"""
|
1462
|
+
return cls._namespace_CDAO('CDAO_0000140')
|
1463
|
+
|
1464
|
+
@classmethod
|
1465
|
+
def ContinuousCharDistanceLengthType(cls):
|
1466
|
+
"""-- No comment or description provided. --
|
1467
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000141)
|
1468
|
+
"""
|
1469
|
+
return cls._namespace_CDAO('CDAO_0000141')
|
1470
|
+
|
1471
|
+
@classmethod
|
1472
|
+
def dA(cls):
|
1473
|
+
"""-- No comment or description provided. --
|
1474
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000220)
|
1475
|
+
"""
|
1476
|
+
return cls._namespace_CDAO('CDAO_0000220')
|
1477
|
+
|
1478
|
+
@classmethod
|
1479
|
+
def absent(cls):
|
1480
|
+
"""-- No comment or description provided. --
|
1481
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000221)
|
1482
|
+
"""
|
1483
|
+
return cls._namespace_CDAO('CDAO_0000221')
|
1484
|
+
|
1485
|
+
@classmethod
|
1486
|
+
def unknown(cls):
|
1487
|
+
"""-- No comment or description provided. --
|
1488
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000222)
|
1489
|
+
"""
|
1490
|
+
return cls._namespace_CDAO('CDAO_0000222')
|
1491
|
+
|
1492
|
+
@classmethod
|
1493
|
+
def gap(cls):
|
1494
|
+
"""-- No comment or description provided. --
|
1495
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000223)
|
1496
|
+
"""
|
1497
|
+
return cls._namespace_CDAO('CDAO_0000223')
|
1498
|
+
|
1499
|
+
@classmethod
|
1500
|
+
def dG(cls):
|
1501
|
+
"""-- No comment or description provided. --
|
1502
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000224)
|
1503
|
+
"""
|
1504
|
+
return cls._namespace_CDAO('CDAO_0000224')
|
1505
|
+
|
1506
|
+
@classmethod
|
1507
|
+
def rU(cls):
|
1508
|
+
"""-- No comment or description provided. --
|
1509
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000225)
|
1510
|
+
"""
|
1511
|
+
return cls._namespace_CDAO('CDAO_0000225')
|
1512
|
+
|
1513
|
+
@classmethod
|
1514
|
+
def dC(cls):
|
1515
|
+
"""-- No comment or description provided. --
|
1516
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000226)
|
1517
|
+
"""
|
1518
|
+
return cls._namespace_CDAO('CDAO_0000226')
|
1519
|
+
|
1520
|
+
@classmethod
|
1521
|
+
def dT(cls):
|
1522
|
+
"""-- No comment or description provided. --
|
1523
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000227)
|
1524
|
+
"""
|
1525
|
+
return cls._namespace_CDAO('CDAO_0000227')
|
1526
|
+
|
1527
|
+
@classmethod
|
1528
|
+
def is_object_property(cls, uri):
|
1529
|
+
"""Determines whether the given URI is an object property.
|
1530
|
+
|
1531
|
+
uri -- URI that is tested for being an object property
|
1532
|
+
"""
|
1533
|
+
if uri == cls._namespace_CDAO('CDAO_0000142'):
|
1534
|
+
return True
|
1535
|
+
if uri == cls._namespace_CDAO('CDAO_0000143'):
|
1536
|
+
return True
|
1537
|
+
if uri == cls._namespace_CDAO('CDAO_0000144'):
|
1538
|
+
return True
|
1539
|
+
if uri == cls._namespace_CDAO('CDAO_0000145'):
|
1540
|
+
return True
|
1541
|
+
if uri == cls._namespace_CDAO('CDAO_0000146'):
|
1542
|
+
return True
|
1543
|
+
if uri == cls._namespace_CDAO('CDAO_0000147'):
|
1544
|
+
return True
|
1545
|
+
if uri == cls._namespace_CDAO('CDAO_0000148'):
|
1546
|
+
return True
|
1547
|
+
if uri == cls._namespace_CDAO('CDAO_0000149'):
|
1548
|
+
return True
|
1549
|
+
if uri == cls._namespace_CDAO('CDAO_0000150'):
|
1550
|
+
return True
|
1551
|
+
if uri == cls._namespace_CDAO('CDAO_0000151'):
|
1552
|
+
return True
|
1553
|
+
if uri == cls._namespace_CDAO('CDAO_0000152'):
|
1554
|
+
return True
|
1555
|
+
if uri == cls._namespace_CDAO('CDAO_0000153'):
|
1556
|
+
return True
|
1557
|
+
if uri == cls._namespace_CDAO('CDAO_0000154'):
|
1558
|
+
return True
|
1559
|
+
if uri == cls._namespace_CDAO('CDAO_0000155'):
|
1560
|
+
return True
|
1561
|
+
if uri == cls._namespace_CDAO('CDAO_0000156'):
|
1562
|
+
return True
|
1563
|
+
if uri == cls._namespace_CDAO('CDAO_0000157'):
|
1564
|
+
return True
|
1565
|
+
if uri == cls._namespace_CDAO('CDAO_0000158'):
|
1566
|
+
return True
|
1567
|
+
if uri == cls._namespace_CDAO('CDAO_0000159'):
|
1568
|
+
return True
|
1569
|
+
if uri == cls._namespace_CDAO('CDAO_0000160'):
|
1570
|
+
return True
|
1571
|
+
if uri == cls._namespace_CDAO('CDAO_0000161'):
|
1572
|
+
return True
|
1573
|
+
if uri == cls._namespace_CDAO('CDAO_0000162'):
|
1574
|
+
return True
|
1575
|
+
if uri == cls._namespace_CDAO('CDAO_0000163'):
|
1576
|
+
return True
|
1577
|
+
if uri == cls._namespace_CDAO('CDAO_0000164'):
|
1578
|
+
return True
|
1579
|
+
if uri == cls._namespace_CDAO('CDAO_0000165'):
|
1580
|
+
return True
|
1581
|
+
if uri == cls._namespace_CDAO('CDAO_0000166'):
|
1582
|
+
return True
|
1583
|
+
if uri == cls._namespace_CDAO('CDAO_0000167'):
|
1584
|
+
return True
|
1585
|
+
if uri == cls._namespace_CDAO('CDAO_0000168'):
|
1586
|
+
return True
|
1587
|
+
if uri == cls._namespace_CDAO('CDAO_0000169'):
|
1588
|
+
return True
|
1589
|
+
if uri == cls._namespace_CDAO('CDAO_0000170'):
|
1590
|
+
return True
|
1591
|
+
if uri == cls._namespace_CDAO('CDAO_0000171'):
|
1592
|
+
return True
|
1593
|
+
if uri == cls._namespace_CDAO('CDAO_0000172'):
|
1594
|
+
return True
|
1595
|
+
if uri == cls._namespace_CDAO('CDAO_0000173'):
|
1596
|
+
return True
|
1597
|
+
if uri == cls._namespace_CDAO('CDAO_0000174'):
|
1598
|
+
return True
|
1599
|
+
if uri == cls._namespace_CDAO('CDAO_0000175'):
|
1600
|
+
return True
|
1601
|
+
if uri == cls._namespace_CDAO('CDAO_0000176'):
|
1602
|
+
return True
|
1603
|
+
if uri == cls._namespace_CDAO('CDAO_0000177'):
|
1604
|
+
return True
|
1605
|
+
if uri == cls._namespace_CDAO('CDAO_0000178'):
|
1606
|
+
return True
|
1607
|
+
if uri == cls._namespace_CDAO('CDAO_0000179'):
|
1608
|
+
return True
|
1609
|
+
if uri == cls._namespace_CDAO('CDAO_0000180'):
|
1610
|
+
return True
|
1611
|
+
if uri == cls._namespace_CDAO('CDAO_0000181'):
|
1612
|
+
return True
|
1613
|
+
if uri == cls._namespace_CDAO('CDAO_0000182'):
|
1614
|
+
return True
|
1615
|
+
if uri == cls._namespace_CDAO('CDAO_0000183'):
|
1616
|
+
return True
|
1617
|
+
if uri == cls._namespace_CDAO('CDAO_0000184'):
|
1618
|
+
return True
|
1619
|
+
if uri == cls._namespace_CDAO('CDAO_0000185'):
|
1620
|
+
return True
|
1621
|
+
if uri == cls._namespace_CDAO('CDAO_0000186'):
|
1622
|
+
return True
|
1623
|
+
if uri == cls._namespace_CDAO('CDAO_0000187'):
|
1624
|
+
return True
|
1625
|
+
if uri == cls._namespace_CDAO('CDAO_0000188'):
|
1626
|
+
return True
|
1627
|
+
if uri == cls._namespace_CDAO('CDAO_0000189'):
|
1628
|
+
return True
|
1629
|
+
if uri == cls._namespace_CDAO('CDAO_0000190'):
|
1630
|
+
return True
|
1631
|
+
if uri == cls._namespace_CDAO('CDAO_0000191'):
|
1632
|
+
return True
|
1633
|
+
if uri == cls._namespace_CDAO('CDAO_0000192'):
|
1634
|
+
return True
|
1635
|
+
if uri == cls._namespace_CDAO('CDAO_0000193'):
|
1636
|
+
return True
|
1637
|
+
if uri == cls._namespace_CDAO('CDAO_0000194'):
|
1638
|
+
return True
|
1639
|
+
if uri == cls._namespace_CDAO('CDAO_0000195'):
|
1640
|
+
return True
|
1641
|
+
if uri == cls._namespace_CDAO('CDAO_0000196'):
|
1642
|
+
return True
|
1643
|
+
if uri == cls._namespace_CDAO('CDAO_0000197'):
|
1644
|
+
return True
|
1645
|
+
if uri == cls._namespace_CDAO('CDAO_0000198'):
|
1646
|
+
return True
|
1647
|
+
if uri == cls._namespace_CDAO('CDAO_0000199'):
|
1648
|
+
return True
|
1649
|
+
if uri == cls._namespace_CDAO('CDAO_0000200'):
|
1650
|
+
return True
|
1651
|
+
if uri == cls._namespace_CDAO('CDAO_0000201'):
|
1652
|
+
return True
|
1653
|
+
if uri == cls._namespace_CDAO('CDAO_0000202'):
|
1654
|
+
return True
|
1655
|
+
if uri == cls._namespace_CDAO('CDAO_0000203'):
|
1656
|
+
return True
|
1657
|
+
if uri == cls._namespace_CDAO('CDAO_0000204'):
|
1658
|
+
return True
|
1659
|
+
if uri == cls._namespace_CDAO('CDAO_0000205'):
|
1660
|
+
return True
|
1661
|
+
if uri == cls._namespace_CDAO('CDAO_0000206'):
|
1662
|
+
return True
|
1663
|
+
if uri == cls._namespace_CDAO('CDAO_0000207'):
|
1664
|
+
return True
|
1665
|
+
if uri == cls._namespace_CDAO('CDAO_0000208'):
|
1666
|
+
return True
|
1667
|
+
if uri == cls._namespace_CDAO('CDAO_0000209'):
|
1668
|
+
return True
|
1669
|
+
if uri == cls._namespace_CDAO('CDAO_0000210'):
|
1670
|
+
return True
|
1671
|
+
return False
|
1672
|
+
|
1673
|
+
@classmethod
|
1674
|
+
def is_datatype_property(cls, uri):
|
1675
|
+
"""Determines whether the given URI is a datatype property.
|
1676
|
+
|
1677
|
+
uri -- URI that is tested for being a datatype property
|
1678
|
+
"""
|
1679
|
+
if uri == cls._namespace_CDAO('CDAO_0000211'):
|
1680
|
+
return True
|
1681
|
+
if uri == cls._namespace_CDAO('CDAO_0000212'):
|
1682
|
+
return True
|
1683
|
+
if uri == cls._namespace_CDAO('CDAO_0000213'):
|
1684
|
+
return True
|
1685
|
+
if uri == cls._namespace_CDAO('CDAO_0000214'):
|
1686
|
+
return True
|
1687
|
+
if uri == cls._namespace_CDAO('CDAO_0000215'):
|
1688
|
+
return True
|
1689
|
+
if uri == cls._namespace_CDAO('CDAO_0000216'):
|
1690
|
+
return True
|
1691
|
+
if uri == cls._namespace_CDAO('CDAO_0000217'):
|
1692
|
+
return True
|
1693
|
+
if uri == cls._namespace_CDAO('CDAO_0000218'):
|
1694
|
+
return True
|
1695
|
+
if uri == cls._namespace_CDAO('CDAO_0000219'):
|
1696
|
+
return True
|
1697
|
+
return False
|
1698
|
+
|
1699
|
+
@classmethod
|
1700
|
+
def is_class(cls, uri):
|
1701
|
+
"""Determines whether the given URI is a class.
|
1702
|
+
|
1703
|
+
uri -- URI that is tested for being a class
|
1704
|
+
"""
|
1705
|
+
if uri == cls._namespace_CDAO('CDAO_0000002'):
|
1706
|
+
return True
|
1707
|
+
if uri == cls._namespace_CDAO('CDAO_0000003'):
|
1708
|
+
return True
|
1709
|
+
if uri == cls._namespace_CDAO('CDAO_0000004'):
|
1710
|
+
return True
|
1711
|
+
if uri == cls._namespace_CDAO('CDAO_0000005'):
|
1712
|
+
return True
|
1713
|
+
if uri == cls._namespace_CDAO('CDAO_0000006'):
|
1714
|
+
return True
|
1715
|
+
if uri == cls._namespace_CDAO('CDAO_0000007'):
|
1716
|
+
return True
|
1717
|
+
if uri == cls._namespace_CDAO('CDAO_0000008'):
|
1718
|
+
return True
|
1719
|
+
if uri == cls._namespace_CDAO('CDAO_0000009'):
|
1720
|
+
return True
|
1721
|
+
if uri == cls._namespace_CDAO('CDAO_0000010'):
|
1722
|
+
return True
|
1723
|
+
if uri == cls._namespace_CDAO('CDAO_0000011'):
|
1724
|
+
return True
|
1725
|
+
if uri == cls._namespace_CDAO('CDAO_0000012'):
|
1726
|
+
return True
|
1727
|
+
if uri == cls._namespace_CDAO('CDAO_0000013'):
|
1728
|
+
return True
|
1729
|
+
if uri == cls._namespace_CDAO('CDAO_0000014'):
|
1730
|
+
return True
|
1731
|
+
if uri == cls._namespace_CDAO('CDAO_0000015'):
|
1732
|
+
return True
|
1733
|
+
if uri == cls._namespace_CDAO('CDAO_0000016'):
|
1734
|
+
return True
|
1735
|
+
if uri == cls._namespace_CDAO('CDAO_0000017'):
|
1736
|
+
return True
|
1737
|
+
if uri == cls._namespace_CDAO('CDAO_0000018'):
|
1738
|
+
return True
|
1739
|
+
if uri == cls._namespace_CDAO('CDAO_0000019'):
|
1740
|
+
return True
|
1741
|
+
if uri == cls._namespace_CDAO('CDAO_0000020'):
|
1742
|
+
return True
|
1743
|
+
if uri == cls._namespace_CDAO('CDAO_0000021'):
|
1744
|
+
return True
|
1745
|
+
if uri == cls._namespace_CDAO('CDAO_0000022'):
|
1746
|
+
return True
|
1747
|
+
if uri == cls._namespace_CDAO('CDAO_0000023'):
|
1748
|
+
return True
|
1749
|
+
if uri == cls._namespace_CDAO('CDAO_0000024'):
|
1750
|
+
return True
|
1751
|
+
if uri == cls._namespace_CDAO('CDAO_0000025'):
|
1752
|
+
return True
|
1753
|
+
if uri == cls._namespace_CDAO('CDAO_0000026'):
|
1754
|
+
return True
|
1755
|
+
if uri == cls._namespace_CDAO('CDAO_0000027'):
|
1756
|
+
return True
|
1757
|
+
if uri == cls._namespace_CDAO('CDAO_0000029'):
|
1758
|
+
return True
|
1759
|
+
if uri == cls._namespace_CDAO('CDAO_0000030'):
|
1760
|
+
return True
|
1761
|
+
if uri == cls._namespace_CDAO('CDAO_0000031'):
|
1762
|
+
return True
|
1763
|
+
if uri == cls._namespace_CDAO('CDAO_0000032'):
|
1764
|
+
return True
|
1765
|
+
if uri == cls._namespace_CDAO('CDAO_0000033'):
|
1766
|
+
return True
|
1767
|
+
if uri == cls._namespace_CDAO('CDAO_0000034'):
|
1768
|
+
return True
|
1769
|
+
if uri == cls._namespace_CDAO('CDAO_0000035'):
|
1770
|
+
return True
|
1771
|
+
if uri == cls._namespace_CDAO('CDAO_0000039'):
|
1772
|
+
return True
|
1773
|
+
if uri == cls._namespace_CDAO('CDAO_0000040'):
|
1774
|
+
return True
|
1775
|
+
if uri == cls._namespace_CDAO('CDAO_0000041'):
|
1776
|
+
return True
|
1777
|
+
if uri == cls._namespace_CDAO('CDAO_0000042'):
|
1778
|
+
return True
|
1779
|
+
if uri == cls._namespace_CDAO('CDAO_0000043'):
|
1780
|
+
return True
|
1781
|
+
if uri == cls._namespace_CDAO('CDAO_0000044'):
|
1782
|
+
return True
|
1783
|
+
if uri == cls._namespace_CDAO('CDAO_0000045'):
|
1784
|
+
return True
|
1785
|
+
if uri == cls._namespace_CDAO('CDAO_0000046'):
|
1786
|
+
return True
|
1787
|
+
if uri == cls._namespace_CDAO('CDAO_0000047'):
|
1788
|
+
return True
|
1789
|
+
if uri == cls._namespace_CDAO('CDAO_0000048'):
|
1790
|
+
return True
|
1791
|
+
if uri == cls._namespace_CDAO('CDAO_0000049'):
|
1792
|
+
return True
|
1793
|
+
if uri == cls._namespace_CDAO('CDAO_0000050'):
|
1794
|
+
return True
|
1795
|
+
if uri == cls._namespace_CDAO('CDAO_0000051'):
|
1796
|
+
return True
|
1797
|
+
if uri == cls._namespace_CDAO('CDAO_0000052'):
|
1798
|
+
return True
|
1799
|
+
if uri == cls._namespace_CDAO('CDAO_0000053'):
|
1800
|
+
return True
|
1801
|
+
if uri == cls._namespace_CDAO('CDAO_0000055'):
|
1802
|
+
return True
|
1803
|
+
if uri == cls._namespace_CDAO('CDAO_0000056'):
|
1804
|
+
return True
|
1805
|
+
if uri == cls._namespace_CDAO('CDAO_0000057'):
|
1806
|
+
return True
|
1807
|
+
if uri == cls._namespace_CDAO('CDAO_0000058'):
|
1808
|
+
return True
|
1809
|
+
if uri == cls._namespace_CDAO('CDAO_0000059'):
|
1810
|
+
return True
|
1811
|
+
if uri == cls._namespace_CDAO('CDAO_0000060'):
|
1812
|
+
return True
|
1813
|
+
if uri == cls._namespace_CDAO('CDAO_0000061'):
|
1814
|
+
return True
|
1815
|
+
if uri == cls._namespace_CDAO('CDAO_0000062'):
|
1816
|
+
return True
|
1817
|
+
if uri == cls._namespace_CDAO('CDAO_0000063'):
|
1818
|
+
return True
|
1819
|
+
if uri == cls._namespace_CDAO('CDAO_0000064'):
|
1820
|
+
return True
|
1821
|
+
if uri == cls._namespace_CDAO('CDAO_0000065'):
|
1822
|
+
return True
|
1823
|
+
if uri == cls._namespace_CDAO('CDAO_0000066'):
|
1824
|
+
return True
|
1825
|
+
if uri == cls._namespace_CDAO('CDAO_0000067'):
|
1826
|
+
return True
|
1827
|
+
if uri == cls._namespace_CDAO('CDAO_0000068'):
|
1828
|
+
return True
|
1829
|
+
if uri == cls._namespace_CDAO('CDAO_0000069'):
|
1830
|
+
return True
|
1831
|
+
if uri == cls._namespace_CDAO('CDAO_0000070'):
|
1832
|
+
return True
|
1833
|
+
if uri == cls._namespace_CDAO('CDAO_0000071'):
|
1834
|
+
return True
|
1835
|
+
if uri == cls._namespace_CDAO('CDAO_0000072'):
|
1836
|
+
return True
|
1837
|
+
if uri == cls._namespace_CDAO('CDAO_0000073'):
|
1838
|
+
return True
|
1839
|
+
if uri == cls._namespace_CDAO('CDAO_0000074'):
|
1840
|
+
return True
|
1841
|
+
if uri == cls._namespace_CDAO('CDAO_0000075'):
|
1842
|
+
return True
|
1843
|
+
if uri == cls._namespace_CDAO('CDAO_0000076'):
|
1844
|
+
return True
|
1845
|
+
if uri == cls._namespace_CDAO('CDAO_0000077'):
|
1846
|
+
return True
|
1847
|
+
if uri == cls._namespace_CDAO('CDAO_0000078'):
|
1848
|
+
return True
|
1849
|
+
if uri == cls._namespace_CDAO('CDAO_0000079'):
|
1850
|
+
return True
|
1851
|
+
if uri == cls._namespace_CDAO('CDAO_0000080'):
|
1852
|
+
return True
|
1853
|
+
if uri == cls._namespace_CDAO('CDAO_0000081'):
|
1854
|
+
return True
|
1855
|
+
if uri == cls._namespace_CDAO('CDAO_0000082'):
|
1856
|
+
return True
|
1857
|
+
if uri == cls._namespace_CDAO('CDAO_0000083'):
|
1858
|
+
return True
|
1859
|
+
if uri == cls._namespace_CDAO('CDAO_0000084'):
|
1860
|
+
return True
|
1861
|
+
if uri == cls._namespace_CDAO('CDAO_0000085'):
|
1862
|
+
return True
|
1863
|
+
if uri == cls._namespace_CDAO('CDAO_0000086'):
|
1864
|
+
return True
|
1865
|
+
if uri == cls._namespace_CDAO('CDAO_0000087'):
|
1866
|
+
return True
|
1867
|
+
if uri == cls._namespace_CDAO('CDAO_0000088'):
|
1868
|
+
return True
|
1869
|
+
if uri == cls._namespace_CDAO('CDAO_0000089'):
|
1870
|
+
return True
|
1871
|
+
if uri == cls._namespace_CDAO('CDAO_0000090'):
|
1872
|
+
return True
|
1873
|
+
if uri == cls._namespace_CDAO('CDAO_0000091'):
|
1874
|
+
return True
|
1875
|
+
if uri == cls._namespace_CDAO('CDAO_0000092'):
|
1876
|
+
return True
|
1877
|
+
if uri == cls._namespace_CDAO('CDAO_0000093'):
|
1878
|
+
return True
|
1879
|
+
if uri == cls._namespace_CDAO('CDAO_0000094'):
|
1880
|
+
return True
|
1881
|
+
if uri == cls._namespace_CDAO('CDAO_0000095'):
|
1882
|
+
return True
|
1883
|
+
if uri == cls._namespace_CDAO('CDAO_0000096'):
|
1884
|
+
return True
|
1885
|
+
if uri == cls._namespace_CDAO('CDAO_0000097'):
|
1886
|
+
return True
|
1887
|
+
if uri == cls._namespace_CDAO('CDAO_0000098'):
|
1888
|
+
return True
|
1889
|
+
if uri == cls._namespace_CDAO('CDAO_0000099'):
|
1890
|
+
return True
|
1891
|
+
if uri == cls._namespace_CDAO('CDAO_0000100'):
|
1892
|
+
return True
|
1893
|
+
if uri == cls._namespace_CDAO('CDAO_0000101'):
|
1894
|
+
return True
|
1895
|
+
if uri == cls._namespace_CDAO('CDAO_0000102'):
|
1896
|
+
return True
|
1897
|
+
if uri == cls._namespace_CDAO('CDAO_0000103'):
|
1898
|
+
return True
|
1899
|
+
if uri == cls._namespace_CDAO('CDAO_0000104'):
|
1900
|
+
return True
|
1901
|
+
if uri == cls._namespace_CDAO('CDAO_0000105'):
|
1902
|
+
return True
|
1903
|
+
if uri == cls._namespace_CDAO('CDAO_0000107'):
|
1904
|
+
return True
|
1905
|
+
if uri == cls._namespace_CDAO('CDAO_0000108'):
|
1906
|
+
return True
|
1907
|
+
if uri == cls._namespace_CDAO('CDAO_0000109'):
|
1908
|
+
return True
|
1909
|
+
if uri == cls._namespace_CDAO('CDAO_0000110'):
|
1910
|
+
return True
|
1911
|
+
if uri == cls._namespace_CDAO('CDAO_0000111'):
|
1912
|
+
return True
|
1913
|
+
if uri == cls._namespace_CDAO('CDAO_0000112'):
|
1914
|
+
return True
|
1915
|
+
if uri == cls._namespace_CDAO('CDAO_0000113'):
|
1916
|
+
return True
|
1917
|
+
if uri == cls._namespace_CDAO('CDAO_0000114'):
|
1918
|
+
return True
|
1919
|
+
if uri == cls._namespace_CDAO('CDAO_0000115'):
|
1920
|
+
return True
|
1921
|
+
if uri == cls._namespace_CDAO('CDAO_0000116'):
|
1922
|
+
return True
|
1923
|
+
if uri == cls._namespace_CDAO('CDAO_0000117'):
|
1924
|
+
return True
|
1925
|
+
if uri == cls._namespace_CDAO('CDAO_0000118'):
|
1926
|
+
return True
|
1927
|
+
if uri == cls._namespace_CDAO('CDAO_0000120'):
|
1928
|
+
return True
|
1929
|
+
if uri == cls._namespace_CDAO('CDAO_0000121'):
|
1930
|
+
return True
|
1931
|
+
if uri == cls._namespace_CDAO('CDAO_0000122'):
|
1932
|
+
return True
|
1933
|
+
if uri == cls._namespace_CDAO('CDAO_0000124'):
|
1934
|
+
return True
|
1935
|
+
if uri == cls._namespace_CDAO('CDAO_0000125'):
|
1936
|
+
return True
|
1937
|
+
if uri == cls._namespace_CDAO('CDAO_0000126'):
|
1938
|
+
return True
|
1939
|
+
if uri == cls._namespace_CDAO('CDAO_0000127'):
|
1940
|
+
return True
|
1941
|
+
if uri == cls._namespace_CDAO('CDAO_0000128'):
|
1942
|
+
return True
|
1943
|
+
if uri == cls._namespace_CDAO('CDAO_0000129'):
|
1944
|
+
return True
|
1945
|
+
if uri == cls._namespace_CDAO('CDAO_0000130'):
|
1946
|
+
return True
|
1947
|
+
if uri == cls._namespace_CDAO('CDAO_0000131'):
|
1948
|
+
return True
|
1949
|
+
if uri == cls._namespace_CDAO('CDAO_0000132'):
|
1950
|
+
return True
|
1951
|
+
if uri == cls._namespace_CDAO('CDAO_0000133'):
|
1952
|
+
return True
|
1953
|
+
if uri == cls._namespace_CDAO('CDAO_0000134'):
|
1954
|
+
return True
|
1955
|
+
if uri == cls._namespace_CDAO('CDAO_0000136'):
|
1956
|
+
return True
|
1957
|
+
if uri == cls._namespace_CDAO('CDAO_0000137'):
|
1958
|
+
return True
|
1959
|
+
if uri == cls._namespace_CDAO('CDAO_0000138'):
|
1960
|
+
return True
|
1961
|
+
if uri == cls._namespace_CDAO('CDAO_0000139'):
|
1962
|
+
return True
|
1963
|
+
if uri == cls._namespace_CDAO('CDAO_0000140'):
|
1964
|
+
return True
|
1965
|
+
if uri == cls._namespace_CDAO('CDAO_0000141'):
|
1966
|
+
return True
|
1967
|
+
return False
|
1968
|
+
|
1969
|
+
@classmethod
|
1970
|
+
def is_named_individual(cls, uri):
|
1971
|
+
"""Determines whether the given URI is a named individual.
|
1972
|
+
|
1973
|
+
uri -- URI that is tested for being a named individual
|
1974
|
+
"""
|
1975
|
+
if uri == cls._namespace_CDAO('CDAO_0000220'):
|
1976
|
+
return True
|
1977
|
+
if uri == cls._namespace_CDAO('CDAO_0000221'):
|
1978
|
+
return True
|
1979
|
+
if uri == cls._namespace_CDAO('CDAO_0000222'):
|
1980
|
+
return True
|
1981
|
+
if uri == cls._namespace_CDAO('CDAO_0000223'):
|
1982
|
+
return True
|
1983
|
+
if uri == cls._namespace_CDAO('CDAO_0000224'):
|
1984
|
+
return True
|
1985
|
+
if uri == cls._namespace_CDAO('CDAO_0000225'):
|
1986
|
+
return True
|
1987
|
+
if uri == cls._namespace_CDAO('CDAO_0000226'):
|
1988
|
+
return True
|
1989
|
+
if uri == cls._namespace_CDAO('CDAO_0000227'):
|
1990
|
+
return True
|
1991
|
+
return False
|
1992
|
+
|
1993
|
+
@classmethod
|
1994
|
+
def with_parent(cls, uris, parent):
|
1995
|
+
"""Returns only those URIs that fall under a designated parent URI.
|
1996
|
+
|
1997
|
+
uris -- Set of URIs that are tested whether they have the given parent URI.
|
1998
|
+
parent -- Parent URI.
|
1999
|
+
"""
|
2000
|
+
return filter(lambda uri: cls.has_parent(uri, parent), uris)
|
2001
|
+
|
2002
|
+
@classmethod
|
2003
|
+
def has_parent(cls, uri, parent):
|
2004
|
+
"""Recursively tries to determine the parent for a given URI.
|
2005
|
+
|
2006
|
+
uri -- URI that is tested for whether it has the given parent URI.
|
2007
|
+
parent -- Parent URI.
|
2008
|
+
"""
|
2009
|
+
if cls.__parent_properties.has_key(uri):
|
2010
|
+
if cls.__parent_properties[uri] == parent:
|
2011
|
+
return True
|
2012
|
+
return cls.has_parent(cls.__parent_properties[uri], parent)
|
2013
|
+
return False
|
2014
|
+
|
2015
|
+
@classmethod
|
2016
|
+
def _namespace_CDAO(cls, accession):
|
2017
|
+
return Namespace('http://purl.obolibrary.org/obo/')[accession]
|
2018
|
+
|
2019
|
+
__parent_properties = { Namespace('http://purl.obolibrary.org/obo/CDAO_0000142') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000143') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000146') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000144') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000145') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000184') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000146') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000190') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000147') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000190') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000148') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000149') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000174') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000150') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000151') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000152') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000205') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000153') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000154') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000183') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000156') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000184') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000158') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000206') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000159') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000182') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000162') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000166') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000205') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000168') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000206') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000170') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000183') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000171') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000173') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000205') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000174') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000175') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000184') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000176') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000177') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000146') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000179') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000144') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000180') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000205') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000182') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000183') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000153') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000184') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000185') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000182') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000186') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000182') 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Namespace('http://purl.obolibrary.org/obo/CDAO_0000110') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000074') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000044') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000075') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000111') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000076') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000034') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000077') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000064') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000079') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000074') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000081') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000074') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000082') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000063') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000083') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000100') 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Namespace('http://purl.obolibrary.org/obo/CDAO_0000096') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000006') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000100') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000063') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000103') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000063') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000104') : Namespace('http://purl.obolibrary.org/obo/http://www.w3.org/2002/07/owl#Thing') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000105') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000107') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000107') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000025') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000108') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000140') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000110') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000006') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000111') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000071') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000112') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000050') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000113') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000107') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000114') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000009') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000115') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000111') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000121') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000064') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000122') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000064') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000125') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000100') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000126') 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Namespace('http://purl.obolibrary.org/obo/CDAO_0000089') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000137') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000007') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000138') : Namespace('http://purl.obolibrary.org/obo/http://www.w3.org/2002/07/owl#Thing') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000141') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000009') }
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2020
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+
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2021
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+
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