biointerchange 0.2.2 → 1.0.0
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- data/Gemfile +1 -0
- data/README.md +269 -19
- data/VERSION +1 -1
- data/examples/bininda_emonds_mammals.new +1 -0
- data/examples/rdfization.rb +17 -0
- data/examples/tree1.new +1 -0
- data/examples/tree2.new +1 -0
- data/examples/vocabulary.rb +26 -5
- data/generators/javaify.rb +12 -18
- data/generators/make_supplement_releases.rb +2 -0
- data/generators/pythonify.rb +21 -8
- data/generators/rdfxml.rb +15 -1
- data/lib/biointerchange/cdao.rb +2014 -0
- data/lib/biointerchange/core.rb +70 -77
- data/lib/biointerchange/genomics/gff3_rdf_ntriples.rb +16 -0
- data/lib/biointerchange/genomics/gff3_reader.rb +18 -4
- data/lib/biointerchange/genomics/gvf_reader.rb +14 -0
- data/lib/biointerchange/phylogenetics/cdao_rdf_ntriples.rb +108 -0
- data/lib/biointerchange/phylogenetics/newick_reader.rb +81 -0
- data/lib/biointerchange/phylogenetics/tree_set.rb +50 -0
- data/lib/biointerchange/registry.rb +50 -8
- data/lib/biointerchange/so.rb +150 -0
- data/lib/biointerchange/textmining/pdfx_xml_reader.rb +21 -2
- data/lib/biointerchange/textmining/pubannos_json_reader.rb +24 -1
- data/lib/biointerchange/textmining/text_mining_rdf_ntriples.rb +9 -0
- data/lib/biointerchange/textmining/text_mining_reader.rb +5 -5
- data/spec/phylogenetics_spec.rb +79 -0
- data/supplemental/java/biointerchange/pom.xml +1 -1
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/CDAO.java +2602 -0
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/FALDO.java +30 -28
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GFF3O.java +136 -104
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GVF1O.java +367 -278
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SIO.java +4388 -3127
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SO.java +5970 -4351
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SOFA.java +733 -544
- data/supplemental/java/biointerchange/src/test/java/org/biointerchange/AppTest.java +3 -1
- data/supplemental/python/biointerchange/cdao.py +2021 -0
- data/supplemental/python/biointerchange/faldo.py +37 -38
- data/supplemental/python/biointerchange/gff3o.py +156 -157
- data/supplemental/python/biointerchange/goxref.py +172 -172
- data/supplemental/python/biointerchange/gvf1o.py +428 -429
- data/supplemental/python/biointerchange/sio.py +3133 -3134
- data/supplemental/python/biointerchange/so.py +6626 -6527
- data/supplemental/python/biointerchange/sofa.py +790 -791
- data/supplemental/python/example.py +23 -5
- data/supplemental/python/setup.py +2 -2
- data/web/about.html +1 -0
- data/web/api.html +223 -15
- data/web/biointerchange.js +27 -6
- data/web/cli.html +8 -3
- data/web/index.html +6 -2
- data/web/ontologies.html +3 -0
- data/web/service/rdfizer.fcgi +7 -15
- data/web/webservices.html +6 -2
- metadata +30 -3
@@ -0,0 +1,2021 @@
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import rdflib
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from rdflib import Namespace
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class CDAO:
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@classmethod
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def has_Character(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000142)
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"""
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return cls._namespace_CDAO('CDAO_0000142')
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@classmethod
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def belongs_to_Edge_as_Child(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000143)
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"""
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return cls._namespace_CDAO('CDAO_0000143')
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@classmethod
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def has_Ancestor(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000144)
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"""
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return cls._namespace_CDAO('CDAO_0000144')
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@classmethod
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def has_Nucleotide_State(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000145)
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"""
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return cls._namespace_CDAO('CDAO_0000145')
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@classmethod
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def belongs_to_Edge(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000146)
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"""
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return cls._namespace_CDAO('CDAO_0000146')
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@classmethod
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def belongs_to_Character_State_Data_Matrix(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000147)
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"""
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return cls._namespace_CDAO('CDAO_0000147')
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@classmethod
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def has_Root(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000148)
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"""
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return cls._namespace_CDAO('CDAO_0000148')
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@classmethod
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def has_Child(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000149)
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"""
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return cls._namespace_CDAO('CDAO_0000149')
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@classmethod
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def has_First_Coordinate_Item(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000150)
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"""
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return cls._namespace_CDAO('CDAO_0000150')
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@classmethod
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def has_Coordinate(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000151)
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"""
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return cls._namespace_CDAO('CDAO_0000151')
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@classmethod
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def belongs_to_Continuous_Character(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000152)
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"""
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return cls._namespace_CDAO('CDAO_0000152')
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@classmethod
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def has_Datum(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000153)
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"""
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return cls._namespace_CDAO('CDAO_0000153')
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@classmethod
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def has_Standard_Datum(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000154)
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"""
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return cls._namespace_CDAO('CDAO_0000154')
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@classmethod
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def subtree_of(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000155)
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"""
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return cls._namespace_CDAO('CDAO_0000155')
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@classmethod
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def has_Amino_Acid_State(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000156)
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"""
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return cls._namespace_CDAO('CDAO_0000156')
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@classmethod
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def is_annotation_of(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000157)
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"""
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return cls._namespace_CDAO('CDAO_0000157')
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@classmethod
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def has_RNA_Datum(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000158)
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"""
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return cls._namespace_CDAO('CDAO_0000158')
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@classmethod
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def has_Left_State(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000159)
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"""
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return cls._namespace_CDAO('CDAO_0000159')
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@classmethod
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def precedes(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000160)
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"""
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return cls._namespace_CDAO('CDAO_0000160')
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@classmethod
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def exclude(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000161)
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"""
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return cls._namespace_CDAO('CDAO_0000161')
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@classmethod
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def has_Node(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000162)
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"""
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return cls._namespace_CDAO('CDAO_0000162')
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@classmethod
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def nca_node_of(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000163)
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"""
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return cls._namespace_CDAO('CDAO_0000163')
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@classmethod
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def has_External_Reference(cls):
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"""Associates a TU to some external taxonomy reference.
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(cls, http://purl.obolibrary.org/obo/CDAO_0000164)
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"""
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return cls._namespace_CDAO('CDAO_0000164')
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@classmethod
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def has_Coordinate_System(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000165)
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"""
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return cls._namespace_CDAO('CDAO_0000165')
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@classmethod
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def belongs_to_Nucleotide_Character(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000166)
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"""
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return cls._namespace_CDAO('CDAO_0000166')
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@classmethod
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def connects_to(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000167)
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"""
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return cls._namespace_CDAO('CDAO_0000167')
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@classmethod
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def has_Amino_Acid_Datum(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000168)
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"""
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return cls._namespace_CDAO('CDAO_0000168')
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@classmethod
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def hereditary_change_of(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000169)
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"""
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return cls._namespace_CDAO('CDAO_0000169')
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@classmethod
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def has_Compound_Datum(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000170)
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"""
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return cls._namespace_CDAO('CDAO_0000170')
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@classmethod
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def has_Descendants(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000171)
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"""
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return cls._namespace_CDAO('CDAO_0000171')
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@classmethod
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def reconciliation_of(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000172)
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"""
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return cls._namespace_CDAO('CDAO_0000172')
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@classmethod
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def belongs_to_Amino_Acid_Character(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000173)
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"""
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return cls._namespace_CDAO('CDAO_0000173')
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@classmethod
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def has_Descendant(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000174)
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"""
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return cls._namespace_CDAO('CDAO_0000174')
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@classmethod
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def has_Continuous_State(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000175)
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"""
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return cls._namespace_CDAO('CDAO_0000175')
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@classmethod
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def has_Type(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000176)
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"""
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return cls._namespace_CDAO('CDAO_0000176')
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@classmethod
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def belongs_to_Edge_as_Parent(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000177)
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"""
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return cls._namespace_CDAO('CDAO_0000177')
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@classmethod
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def has(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000178)
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"""
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return cls._namespace_CDAO('CDAO_0000178')
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@classmethod
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def has_Parent(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000179)
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"""
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return cls._namespace_CDAO('CDAO_0000179')
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@classmethod
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def belongs_to_Compound_Character(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000180)
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"""
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return cls._namespace_CDAO('CDAO_0000180')
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@classmethod
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def homologous_to(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000181)
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"""
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return cls._namespace_CDAO('CDAO_0000181')
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@classmethod
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def has_Change_Component(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000182)
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"""
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return cls._namespace_CDAO('CDAO_0000182')
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@classmethod
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def has_Categorical_Datum(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000183)
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"""
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return cls._namespace_CDAO('CDAO_0000183')
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@classmethod
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def has_State(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000184)
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"""
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return cls._namespace_CDAO('CDAO_0000184')
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@classmethod
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def has_Left_Node(cls):
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"""-- No comment or description provided. --
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(cls, http://purl.obolibrary.org/obo/CDAO_0000185)
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+
"""
|
314
|
+
return cls._namespace_CDAO('CDAO_0000185')
|
315
|
+
|
316
|
+
@classmethod
|
317
|
+
def has_Right_State(cls):
|
318
|
+
"""-- No comment or description provided. --
|
319
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000186)
|
320
|
+
"""
|
321
|
+
return cls._namespace_CDAO('CDAO_0000186')
|
322
|
+
|
323
|
+
@classmethod
|
324
|
+
def represents_TU(cls):
|
325
|
+
"""-- No comment or description provided. --
|
326
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000187)
|
327
|
+
"""
|
328
|
+
return cls._namespace_CDAO('CDAO_0000187')
|
329
|
+
|
330
|
+
@classmethod
|
331
|
+
def exclude_Node(cls):
|
332
|
+
"""-- No comment or description provided. --
|
333
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000188)
|
334
|
+
"""
|
335
|
+
return cls._namespace_CDAO('CDAO_0000188')
|
336
|
+
|
337
|
+
@classmethod
|
338
|
+
def has_Compound_State(cls):
|
339
|
+
"""-- No comment or description provided. --
|
340
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000189)
|
341
|
+
"""
|
342
|
+
return cls._namespace_CDAO('CDAO_0000189')
|
343
|
+
|
344
|
+
@classmethod
|
345
|
+
def belongs_to(cls):
|
346
|
+
"""-- No comment or description provided. --
|
347
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000190)
|
348
|
+
"""
|
349
|
+
return cls._namespace_CDAO('CDAO_0000190')
|
350
|
+
|
351
|
+
@classmethod
|
352
|
+
def belongs_to_TU(cls):
|
353
|
+
"""-- No comment or description provided. --
|
354
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000191)
|
355
|
+
"""
|
356
|
+
return cls._namespace_CDAO('CDAO_0000191')
|
357
|
+
|
358
|
+
@classmethod
|
359
|
+
def belongs_to_Network(cls):
|
360
|
+
"""-- No comment or description provided. --
|
361
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000192)
|
362
|
+
"""
|
363
|
+
return cls._namespace_CDAO('CDAO_0000192')
|
364
|
+
|
365
|
+
@classmethod
|
366
|
+
def has_Annotation(cls):
|
367
|
+
"""-- No comment or description provided. --
|
368
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000193)
|
369
|
+
"""
|
370
|
+
return cls._namespace_CDAO('CDAO_0000193')
|
371
|
+
|
372
|
+
@classmethod
|
373
|
+
def part_of(cls):
|
374
|
+
"""-- No comment or description provided. --
|
375
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000194)
|
376
|
+
"""
|
377
|
+
return cls._namespace_CDAO('CDAO_0000194')
|
378
|
+
|
379
|
+
@classmethod
|
380
|
+
def has_Nucleotide_Datum(cls):
|
381
|
+
"""-- No comment or description provided. --
|
382
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000195)
|
383
|
+
"""
|
384
|
+
return cls._namespace_CDAO('CDAO_0000195')
|
385
|
+
|
386
|
+
@classmethod
|
387
|
+
def represented_by_Node(cls):
|
388
|
+
"""-- No comment or description provided. --
|
389
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000196)
|
390
|
+
"""
|
391
|
+
return cls._namespace_CDAO('CDAO_0000196')
|
392
|
+
|
393
|
+
@classmethod
|
394
|
+
def has_Remaining_Coordinate_List(cls):
|
395
|
+
"""-- No comment or description provided. --
|
396
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000197)
|
397
|
+
"""
|
398
|
+
return cls._namespace_CDAO('CDAO_0000197')
|
399
|
+
|
400
|
+
@classmethod
|
401
|
+
def has_Element(cls):
|
402
|
+
"""-- No comment or description provided. --
|
403
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000198)
|
404
|
+
"""
|
405
|
+
return cls._namespace_CDAO('CDAO_0000198')
|
406
|
+
|
407
|
+
@classmethod
|
408
|
+
def exclude_Subtree(cls):
|
409
|
+
"""-- No comment or description provided. --
|
410
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000199)
|
411
|
+
"""
|
412
|
+
return cls._namespace_CDAO('CDAO_0000199')
|
413
|
+
|
414
|
+
@classmethod
|
415
|
+
def belongs_to_Tree(cls):
|
416
|
+
"""-- No comment or description provided. --
|
417
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000200)
|
418
|
+
"""
|
419
|
+
return cls._namespace_CDAO('CDAO_0000200')
|
420
|
+
|
421
|
+
@classmethod
|
422
|
+
def has_Parent_Node(cls):
|
423
|
+
"""-- No comment or description provided. --
|
424
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000201)
|
425
|
+
"""
|
426
|
+
return cls._namespace_CDAO('CDAO_0000201')
|
427
|
+
|
428
|
+
@classmethod
|
429
|
+
def has_Lineage_node(cls):
|
430
|
+
"""-- No comment or description provided. --
|
431
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000202)
|
432
|
+
"""
|
433
|
+
return cls._namespace_CDAO('CDAO_0000202')
|
434
|
+
|
435
|
+
@classmethod
|
436
|
+
def belongs_to_Tree_as_Root(cls):
|
437
|
+
"""-- No comment or description provided. --
|
438
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000203)
|
439
|
+
"""
|
440
|
+
return cls._namespace_CDAO('CDAO_0000203')
|
441
|
+
|
442
|
+
@classmethod
|
443
|
+
def has_Hereditary_Change(cls):
|
444
|
+
"""-- No comment or description provided. --
|
445
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000204)
|
446
|
+
"""
|
447
|
+
return cls._namespace_CDAO('CDAO_0000204')
|
448
|
+
|
449
|
+
@classmethod
|
450
|
+
def belongs_to_Character(cls):
|
451
|
+
"""-- No comment or description provided. --
|
452
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000205)
|
453
|
+
"""
|
454
|
+
return cls._namespace_CDAO('CDAO_0000205')
|
455
|
+
|
456
|
+
@classmethod
|
457
|
+
def has_Molecular_Datum(cls):
|
458
|
+
"""-- No comment or description provided. --
|
459
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000206)
|
460
|
+
"""
|
461
|
+
return cls._namespace_CDAO('CDAO_0000206')
|
462
|
+
|
463
|
+
@classmethod
|
464
|
+
def has_Continuous_Datum(cls):
|
465
|
+
"""-- No comment or description provided. --
|
466
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000207)
|
467
|
+
"""
|
468
|
+
return cls._namespace_CDAO('CDAO_0000207')
|
469
|
+
|
470
|
+
@classmethod
|
471
|
+
def has_TU(cls):
|
472
|
+
"""-- No comment or description provided. --
|
473
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000208)
|
474
|
+
"""
|
475
|
+
return cls._namespace_CDAO('CDAO_0000208')
|
476
|
+
|
477
|
+
@classmethod
|
478
|
+
def has_Child_Node(cls):
|
479
|
+
"""-- No comment or description provided. --
|
480
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000209)
|
481
|
+
"""
|
482
|
+
return cls._namespace_CDAO('CDAO_0000209')
|
483
|
+
|
484
|
+
@classmethod
|
485
|
+
def has_Right_Node(cls):
|
486
|
+
"""-- No comment or description provided. --
|
487
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000210)
|
488
|
+
"""
|
489
|
+
return cls._namespace_CDAO('CDAO_0000210')
|
490
|
+
|
491
|
+
@classmethod
|
492
|
+
def has_Precision(cls):
|
493
|
+
"""-- No comment or description provided. --
|
494
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000211)
|
495
|
+
"""
|
496
|
+
return cls._namespace_CDAO('CDAO_0000211')
|
497
|
+
|
498
|
+
@classmethod
|
499
|
+
def has_Point_Coordinate_Value(cls):
|
500
|
+
"""-- No comment or description provided. --
|
501
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000212)
|
502
|
+
"""
|
503
|
+
return cls._namespace_CDAO('CDAO_0000212')
|
504
|
+
|
505
|
+
@classmethod
|
506
|
+
def has_Int_Value(cls):
|
507
|
+
"""-- No comment or description provided. --
|
508
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000213)
|
509
|
+
"""
|
510
|
+
return cls._namespace_CDAO('CDAO_0000213')
|
511
|
+
|
512
|
+
@classmethod
|
513
|
+
def has_Support_Value(cls):
|
514
|
+
"""-- No comment or description provided. --
|
515
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000214)
|
516
|
+
"""
|
517
|
+
return cls._namespace_CDAO('CDAO_0000214')
|
518
|
+
|
519
|
+
@classmethod
|
520
|
+
def has_Value(cls):
|
521
|
+
"""-- No comment or description provided. --
|
522
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000215)
|
523
|
+
"""
|
524
|
+
return cls._namespace_CDAO('CDAO_0000215')
|
525
|
+
|
526
|
+
@classmethod
|
527
|
+
def has_Uncertainty_Factor(cls):
|
528
|
+
"""-- No comment or description provided. --
|
529
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000216)
|
530
|
+
"""
|
531
|
+
return cls._namespace_CDAO('CDAO_0000216')
|
532
|
+
|
533
|
+
@classmethod
|
534
|
+
def has_Range_End_Value(cls):
|
535
|
+
"""-- No comment or description provided. --
|
536
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000217)
|
537
|
+
"""
|
538
|
+
return cls._namespace_CDAO('CDAO_0000217')
|
539
|
+
|
540
|
+
@classmethod
|
541
|
+
def has_Float_Value(cls):
|
542
|
+
"""-- No comment or description provided. --
|
543
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000218)
|
544
|
+
"""
|
545
|
+
return cls._namespace_CDAO('CDAO_0000218')
|
546
|
+
|
547
|
+
@classmethod
|
548
|
+
def has_Range_Start_Value(cls):
|
549
|
+
"""-- No comment or description provided. --
|
550
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000219)
|
551
|
+
"""
|
552
|
+
return cls._namespace_CDAO('CDAO_0000219')
|
553
|
+
|
554
|
+
@classmethod
|
555
|
+
def DesoxiRibonucleotideResidueStateDatum(cls):
|
556
|
+
"""-- No comment or description provided. --
|
557
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000002)
|
558
|
+
"""
|
559
|
+
return cls._namespace_CDAO('CDAO_0000002')
|
560
|
+
|
561
|
+
@classmethod
|
562
|
+
def CoordinatePoint(cls):
|
563
|
+
"""-- No comment or description provided. --
|
564
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000003)
|
565
|
+
"""
|
566
|
+
return cls._namespace_CDAO('CDAO_0000003')
|
567
|
+
|
568
|
+
@classmethod
|
569
|
+
def Lineage(cls):
|
570
|
+
"""-- No comment or description provided. --
|
571
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000004)
|
572
|
+
"""
|
573
|
+
return cls._namespace_CDAO('CDAO_0000004')
|
574
|
+
|
575
|
+
@classmethod
|
576
|
+
def Phylo4Tree(cls):
|
577
|
+
"""-- No comment or description provided. --
|
578
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000005)
|
579
|
+
"""
|
580
|
+
return cls._namespace_CDAO('CDAO_0000005')
|
581
|
+
|
582
|
+
@classmethod
|
583
|
+
def Network(cls):
|
584
|
+
"""-- No comment or description provided. --
|
585
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000006)
|
586
|
+
"""
|
587
|
+
return cls._namespace_CDAO('CDAO_0000006')
|
588
|
+
|
589
|
+
@classmethod
|
590
|
+
def ModelDescription(cls):
|
591
|
+
"""This is a non-computible description of a model, not the fully specified mathematical model, which typically relates the probability of a transformation to various parameters.
|
592
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000007)
|
593
|
+
"""
|
594
|
+
return cls._namespace_CDAO('CDAO_0000007')
|
595
|
+
|
596
|
+
@classmethod
|
597
|
+
def StandardStateDatum(cls):
|
598
|
+
"""-- No comment or description provided. --
|
599
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000008)
|
600
|
+
"""
|
601
|
+
return cls._namespace_CDAO('CDAO_0000008')
|
602
|
+
|
603
|
+
@classmethod
|
604
|
+
def ContinuousCharacterLengthType(cls):
|
605
|
+
"""-- No comment or description provided. --
|
606
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000009)
|
607
|
+
"""
|
608
|
+
return cls._namespace_CDAO('CDAO_0000009')
|
609
|
+
|
610
|
+
@classmethod
|
611
|
+
def ContinuousCharBayesianLengthType(cls):
|
612
|
+
"""-- No comment or description provided. --
|
613
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000010)
|
614
|
+
"""
|
615
|
+
return cls._namespace_CDAO('CDAO_0000010')
|
616
|
+
|
617
|
+
@classmethod
|
618
|
+
def NEXUSTreeBlock(cls):
|
619
|
+
"""-- No comment or description provided. --
|
620
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000011)
|
621
|
+
"""
|
622
|
+
return cls._namespace_CDAO('CDAO_0000011')
|
623
|
+
|
624
|
+
@classmethod
|
625
|
+
def RootedTree(cls):
|
626
|
+
"""-- No comment or description provided. --
|
627
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000012)
|
628
|
+
"""
|
629
|
+
return cls._namespace_CDAO('CDAO_0000012')
|
630
|
+
|
631
|
+
@classmethod
|
632
|
+
def Kimura2Parameters(cls):
|
633
|
+
"""-- No comment or description provided. --
|
634
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000013)
|
635
|
+
"""
|
636
|
+
return cls._namespace_CDAO('CDAO_0000013')
|
637
|
+
|
638
|
+
@classmethod
|
639
|
+
def TreeProcedure(cls):
|
640
|
+
"""-- No comment or description provided. --
|
641
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000014)
|
642
|
+
"""
|
643
|
+
return cls._namespace_CDAO('CDAO_0000014')
|
644
|
+
|
645
|
+
@classmethod
|
646
|
+
def Generic_State(cls):
|
647
|
+
"""This class should be renamed. These are not generic states but non-concrete states including gap, unknown and missing.
|
648
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000015)
|
649
|
+
"""
|
650
|
+
return cls._namespace_CDAO('CDAO_0000015')
|
651
|
+
|
652
|
+
@classmethod
|
653
|
+
def UnrootedSubtree(cls):
|
654
|
+
"""-- No comment or description provided. --
|
655
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000016)
|
656
|
+
"""
|
657
|
+
return cls._namespace_CDAO('CDAO_0000016')
|
658
|
+
|
659
|
+
@classmethod
|
660
|
+
def UnresolvedTree(cls):
|
661
|
+
"""-- No comment or description provided. --
|
662
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000017)
|
663
|
+
"""
|
664
|
+
return cls._namespace_CDAO('CDAO_0000017')
|
665
|
+
|
666
|
+
@classmethod
|
667
|
+
def BifurcatingTree(cls):
|
668
|
+
"""-- No comment or description provided. --
|
669
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000018)
|
670
|
+
"""
|
671
|
+
return cls._namespace_CDAO('CDAO_0000018')
|
672
|
+
|
673
|
+
@classmethod
|
674
|
+
def ContinuousStateDatum(cls):
|
675
|
+
"""-- No comment or description provided. --
|
676
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000019)
|
677
|
+
"""
|
678
|
+
return cls._namespace_CDAO('CDAO_0000019')
|
679
|
+
|
680
|
+
@classmethod
|
681
|
+
def SubstitutionModel(cls):
|
682
|
+
"""-- No comment or description provided. --
|
683
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000020)
|
684
|
+
"""
|
685
|
+
return cls._namespace_CDAO('CDAO_0000020')
|
686
|
+
|
687
|
+
@classmethod
|
688
|
+
def JukesKantor(cls):
|
689
|
+
"""-- No comment or description provided. --
|
690
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000021)
|
691
|
+
"""
|
692
|
+
return cls._namespace_CDAO('CDAO_0000021')
|
693
|
+
|
694
|
+
@classmethod
|
695
|
+
def DatumCoordinate(cls):
|
696
|
+
"""drawing from seqloc categories from NCBI at http://www.ncbi.nlm.nih.gov/IEB/ToolBox/SDKDOCS/SEQLOC.HTML#_Seq-loc:_Locations_on
|
697
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000022)
|
698
|
+
"""
|
699
|
+
return cls._namespace_CDAO('CDAO_0000022')
|
700
|
+
|
701
|
+
@classmethod
|
702
|
+
def UnresolvedRootedTree(cls):
|
703
|
+
"""-- No comment or description provided. --
|
704
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000023)
|
705
|
+
"""
|
706
|
+
return cls._namespace_CDAO('CDAO_0000023')
|
707
|
+
|
708
|
+
@classmethod
|
709
|
+
def Branch(cls):
|
710
|
+
"""-- No comment or description provided. --
|
711
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000024)
|
712
|
+
"""
|
713
|
+
return cls._namespace_CDAO('CDAO_0000024')
|
714
|
+
|
715
|
+
@classmethod
|
716
|
+
def CharacterStateDataMatrixAnnotation(cls):
|
717
|
+
"""-- No comment or description provided. --
|
718
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000025)
|
719
|
+
"""
|
720
|
+
return cls._namespace_CDAO('CDAO_0000025')
|
721
|
+
|
722
|
+
@classmethod
|
723
|
+
def AncestralNode(cls):
|
724
|
+
"""-- No comment or description provided. --
|
725
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000026)
|
726
|
+
"""
|
727
|
+
return cls._namespace_CDAO('CDAO_0000026')
|
728
|
+
|
729
|
+
@classmethod
|
730
|
+
def UnresolvedUnrootedTree(cls):
|
731
|
+
"""-- No comment or description provided. --
|
732
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000027)
|
733
|
+
"""
|
734
|
+
return cls._namespace_CDAO('CDAO_0000027')
|
735
|
+
|
736
|
+
@classmethod
|
737
|
+
def UncertainStateDomain(cls):
|
738
|
+
"""-- No comment or description provided. --
|
739
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000029)
|
740
|
+
"""
|
741
|
+
return cls._namespace_CDAO('CDAO_0000029')
|
742
|
+
|
743
|
+
@classmethod
|
744
|
+
def ReconcileTree(cls):
|
745
|
+
"""-- No comment or description provided. --
|
746
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000030)
|
747
|
+
"""
|
748
|
+
return cls._namespace_CDAO('CDAO_0000030')
|
749
|
+
|
750
|
+
@classmethod
|
751
|
+
def Continuous(cls):
|
752
|
+
"""-- No comment or description provided. --
|
753
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000031)
|
754
|
+
"""
|
755
|
+
return cls._namespace_CDAO('CDAO_0000031')
|
756
|
+
|
757
|
+
@classmethod
|
758
|
+
def AlignmentProcedure(cls):
|
759
|
+
"""-- No comment or description provided. --
|
760
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000032)
|
761
|
+
"""
|
762
|
+
return cls._namespace_CDAO('CDAO_0000032')
|
763
|
+
|
764
|
+
@classmethod
|
765
|
+
def Dichotomy(cls):
|
766
|
+
"""-- No comment or description provided. --
|
767
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000033)
|
768
|
+
"""
|
769
|
+
return cls._namespace_CDAO('CDAO_0000033')
|
770
|
+
|
771
|
+
@classmethod
|
772
|
+
def Molecular(cls):
|
773
|
+
"""-- No comment or description provided. --
|
774
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000034)
|
775
|
+
"""
|
776
|
+
return cls._namespace_CDAO('CDAO_0000034')
|
777
|
+
|
778
|
+
@classmethod
|
779
|
+
def ContinuousCharParsimonyLengthType(cls):
|
780
|
+
"""-- No comment or description provided. --
|
781
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000035)
|
782
|
+
"""
|
783
|
+
return cls._namespace_CDAO('CDAO_0000035')
|
784
|
+
|
785
|
+
@classmethod
|
786
|
+
def Categorical(cls):
|
787
|
+
"""-- No comment or description provided. --
|
788
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000039)
|
789
|
+
"""
|
790
|
+
return cls._namespace_CDAO('CDAO_0000039')
|
791
|
+
|
792
|
+
@classmethod
|
793
|
+
def CDAOAnnotation(cls):
|
794
|
+
"""Its possible that this base class should be discarded and that annotations should inherit from an imported base class if one exists.
|
795
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000040)
|
796
|
+
"""
|
797
|
+
return cls._namespace_CDAO('CDAO_0000040')
|
798
|
+
|
799
|
+
@classmethod
|
800
|
+
def originationEvent(cls):
|
801
|
+
"""-- No comment or description provided. --
|
802
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000041)
|
803
|
+
"""
|
804
|
+
return cls._namespace_CDAO('CDAO_0000041')
|
805
|
+
|
806
|
+
@classmethod
|
807
|
+
def Polytomy(cls):
|
808
|
+
"""-- No comment or description provided. --
|
809
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000042)
|
810
|
+
"""
|
811
|
+
return cls._namespace_CDAO('CDAO_0000042')
|
812
|
+
|
813
|
+
@classmethod
|
814
|
+
def PolymorphicStateDomain(cls):
|
815
|
+
"""-- No comment or description provided. --
|
816
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000043)
|
817
|
+
"""
|
818
|
+
return cls._namespace_CDAO('CDAO_0000043')
|
819
|
+
|
820
|
+
@classmethod
|
821
|
+
def TreeAnnotation(cls):
|
822
|
+
"""-- No comment or description provided. --
|
823
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000044)
|
824
|
+
"""
|
825
|
+
return cls._namespace_CDAO('CDAO_0000044')
|
826
|
+
|
827
|
+
@classmethod
|
828
|
+
def Standard(cls):
|
829
|
+
"""-- No comment or description provided. --
|
830
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000045)
|
831
|
+
"""
|
832
|
+
return cls._namespace_CDAO('CDAO_0000045')
|
833
|
+
|
834
|
+
@classmethod
|
835
|
+
def EdgeLength(cls):
|
836
|
+
"""Its possible that this should not be classed as an 'annotation' since it contains data rather than meta-data.
|
837
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000046)
|
838
|
+
"""
|
839
|
+
return cls._namespace_CDAO('CDAO_0000046')
|
840
|
+
|
841
|
+
@classmethod
|
842
|
+
def RibonucleotideResidue(cls):
|
843
|
+
"""-- No comment or description provided. --
|
844
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000047)
|
845
|
+
"""
|
846
|
+
return cls._namespace_CDAO('CDAO_0000047')
|
847
|
+
|
848
|
+
@classmethod
|
849
|
+
def Clade(cls):
|
850
|
+
"""-- No comment or description provided. --
|
851
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000048)
|
852
|
+
"""
|
853
|
+
return cls._namespace_CDAO('CDAO_0000048')
|
854
|
+
|
855
|
+
@classmethod
|
856
|
+
def DiscreteCharParsimonyLengthType(cls):
|
857
|
+
"""-- No comment or description provided. --
|
858
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000049)
|
859
|
+
"""
|
860
|
+
return cls._namespace_CDAO('CDAO_0000049')
|
861
|
+
|
862
|
+
@classmethod
|
863
|
+
def MolecularStateDatum(cls):
|
864
|
+
"""-- No comment or description provided. --
|
865
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000050)
|
866
|
+
"""
|
867
|
+
return cls._namespace_CDAO('CDAO_0000050')
|
868
|
+
|
869
|
+
@classmethod
|
870
|
+
def PolyphyleticGroup(cls):
|
871
|
+
"""-- No comment or description provided. --
|
872
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000051)
|
873
|
+
"""
|
874
|
+
return cls._namespace_CDAO('CDAO_0000051')
|
875
|
+
|
876
|
+
@classmethod
|
877
|
+
def NexusDataBlock(cls):
|
878
|
+
"""-- No comment or description provided. --
|
879
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000052)
|
880
|
+
"""
|
881
|
+
return cls._namespace_CDAO('CDAO_0000052')
|
882
|
+
|
883
|
+
@classmethod
|
884
|
+
def BranchingNode(cls):
|
885
|
+
"""-- No comment or description provided. --
|
886
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000053)
|
887
|
+
"""
|
888
|
+
return cls._namespace_CDAO('CDAO_0000053')
|
889
|
+
|
890
|
+
@classmethod
|
891
|
+
def Compound(cls):
|
892
|
+
"""-- No comment or description provided. --
|
893
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000055)
|
894
|
+
"""
|
895
|
+
return cls._namespace_CDAO('CDAO_0000055')
|
896
|
+
|
897
|
+
@classmethod
|
898
|
+
def CharacterStateDataMatrix(cls):
|
899
|
+
"""-- No comment or description provided. --
|
900
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000056)
|
901
|
+
"""
|
902
|
+
return cls._namespace_CDAO('CDAO_0000056')
|
903
|
+
|
904
|
+
@classmethod
|
905
|
+
def RibonucleotideResidueStateDatum(cls):
|
906
|
+
"""-- No comment or description provided. --
|
907
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000057)
|
908
|
+
"""
|
909
|
+
return cls._namespace_CDAO('CDAO_0000057')
|
910
|
+
|
911
|
+
@classmethod
|
912
|
+
def TimeCalibratedLengthType(cls):
|
913
|
+
"""-- No comment or description provided. --
|
914
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000058)
|
915
|
+
"""
|
916
|
+
return cls._namespace_CDAO('CDAO_0000058')
|
917
|
+
|
918
|
+
@classmethod
|
919
|
+
def SetOfNodes(cls):
|
920
|
+
"""-- No comment or description provided. --
|
921
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000059)
|
922
|
+
"""
|
923
|
+
return cls._namespace_CDAO('CDAO_0000059')
|
924
|
+
|
925
|
+
@classmethod
|
926
|
+
def MRCANode(cls):
|
927
|
+
"""-- No comment or description provided. --
|
928
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000060)
|
929
|
+
"""
|
930
|
+
return cls._namespace_CDAO('CDAO_0000060')
|
931
|
+
|
932
|
+
@classmethod
|
933
|
+
def FASTADataMatrix(cls):
|
934
|
+
"""-- No comment or description provided. --
|
935
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000061)
|
936
|
+
"""
|
937
|
+
return cls._namespace_CDAO('CDAO_0000061')
|
938
|
+
|
939
|
+
@classmethod
|
940
|
+
def evolutionaryTransition(cls):
|
941
|
+
"""-- No comment or description provided. --
|
942
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000062)
|
943
|
+
"""
|
944
|
+
return cls._namespace_CDAO('CDAO_0000062')
|
945
|
+
|
946
|
+
@classmethod
|
947
|
+
def EdgeLengthType(cls):
|
948
|
+
"""-- No comment or description provided. --
|
949
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000063)
|
950
|
+
"""
|
951
|
+
return cls._namespace_CDAO('CDAO_0000063')
|
952
|
+
|
953
|
+
@classmethod
|
954
|
+
def cladogeneticChange(cls):
|
955
|
+
"""-- No comment or description provided. --
|
956
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000064)
|
957
|
+
"""
|
958
|
+
return cls._namespace_CDAO('CDAO_0000064')
|
959
|
+
|
960
|
+
@classmethod
|
961
|
+
def anageneticChange(cls):
|
962
|
+
"""-- No comment or description provided. --
|
963
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000065)
|
964
|
+
"""
|
965
|
+
return cls._namespace_CDAO('CDAO_0000065')
|
966
|
+
|
967
|
+
@classmethod
|
968
|
+
def TUAnnotation(cls):
|
969
|
+
"""-- No comment or description provided. --
|
970
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000066)
|
971
|
+
"""
|
972
|
+
return cls._namespace_CDAO('CDAO_0000066')
|
973
|
+
|
974
|
+
@classmethod
|
975
|
+
def PhyloTree(cls):
|
976
|
+
"""-- No comment or description provided. --
|
977
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000067)
|
978
|
+
"""
|
979
|
+
return cls._namespace_CDAO('CDAO_0000067')
|
980
|
+
|
981
|
+
@classmethod
|
982
|
+
def ContinuousCharacter(cls):
|
983
|
+
"""-- No comment or description provided. --
|
984
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000068)
|
985
|
+
"""
|
986
|
+
return cls._namespace_CDAO('CDAO_0000068')
|
987
|
+
|
988
|
+
@classmethod
|
989
|
+
def PHYLIPTree(cls):
|
990
|
+
"""-- No comment or description provided. --
|
991
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000069)
|
992
|
+
"""
|
993
|
+
return cls._namespace_CDAO('CDAO_0000069')
|
994
|
+
|
995
|
+
@classmethod
|
996
|
+
def Subtree(cls):
|
997
|
+
"""-- No comment or description provided. --
|
998
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000070)
|
999
|
+
"""
|
1000
|
+
return cls._namespace_CDAO('CDAO_0000070')
|
1001
|
+
|
1002
|
+
@classmethod
|
1003
|
+
def Character(cls):
|
1004
|
+
"""Traits shown to be relevant for phylogenetic classification
|
1005
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000071)
|
1006
|
+
"""
|
1007
|
+
return cls._namespace_CDAO('CDAO_0000071')
|
1008
|
+
|
1009
|
+
@classmethod
|
1010
|
+
def GalledTree(cls):
|
1011
|
+
"""-- No comment or description provided. --
|
1012
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000072)
|
1013
|
+
"""
|
1014
|
+
return cls._namespace_CDAO('CDAO_0000072')
|
1015
|
+
|
1016
|
+
@classmethod
|
1017
|
+
def SpeciesTree(cls):
|
1018
|
+
"""-- No comment or description provided. --
|
1019
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000073)
|
1020
|
+
"""
|
1021
|
+
return cls._namespace_CDAO('CDAO_0000073')
|
1022
|
+
|
1023
|
+
@classmethod
|
1024
|
+
def TreeFormat(cls):
|
1025
|
+
"""-- No comment or description provided. --
|
1026
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000074)
|
1027
|
+
"""
|
1028
|
+
return cls._namespace_CDAO('CDAO_0000074')
|
1029
|
+
|
1030
|
+
@classmethod
|
1031
|
+
def StandardCharacter(cls):
|
1032
|
+
"""-- No comment or description provided. --
|
1033
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000075)
|
1034
|
+
"""
|
1035
|
+
return cls._namespace_CDAO('CDAO_0000075')
|
1036
|
+
|
1037
|
+
@classmethod
|
1038
|
+
def AminoAcidResidue(cls):
|
1039
|
+
"""-- No comment or description provided. --
|
1040
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000076)
|
1041
|
+
"""
|
1042
|
+
return cls._namespace_CDAO('CDAO_0000076')
|
1043
|
+
|
1044
|
+
@classmethod
|
1045
|
+
def geneDuplication(cls):
|
1046
|
+
"""-- No comment or description provided. --
|
1047
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000077)
|
1048
|
+
"""
|
1049
|
+
return cls._namespace_CDAO('CDAO_0000077')
|
1050
|
+
|
1051
|
+
@classmethod
|
1052
|
+
def CompoundCharacter(cls):
|
1053
|
+
"""-- No comment or description provided. --
|
1054
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000078)
|
1055
|
+
"""
|
1056
|
+
return cls._namespace_CDAO('CDAO_0000078')
|
1057
|
+
|
1058
|
+
@classmethod
|
1059
|
+
def SIMMAPTree(cls):
|
1060
|
+
"""-- No comment or description provided. --
|
1061
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000079)
|
1062
|
+
"""
|
1063
|
+
return cls._namespace_CDAO('CDAO_0000079')
|
1064
|
+
|
1065
|
+
@classmethod
|
1066
|
+
def CommonAncestralNode(cls):
|
1067
|
+
"""-- No comment or description provided. --
|
1068
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000080)
|
1069
|
+
"""
|
1070
|
+
return cls._namespace_CDAO('CDAO_0000080')
|
1071
|
+
|
1072
|
+
@classmethod
|
1073
|
+
def NewickTree(cls):
|
1074
|
+
"""-- No comment or description provided. --
|
1075
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000081)
|
1076
|
+
"""
|
1077
|
+
return cls._namespace_CDAO('CDAO_0000081')
|
1078
|
+
|
1079
|
+
@classmethod
|
1080
|
+
def TimeProportionalLengthType(cls):
|
1081
|
+
"""-- No comment or description provided. --
|
1082
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000082)
|
1083
|
+
"""
|
1084
|
+
return cls._namespace_CDAO('CDAO_0000082')
|
1085
|
+
|
1086
|
+
@classmethod
|
1087
|
+
def DiscreteCharDistanceLengthType(cls):
|
1088
|
+
"""-- No comment or description provided. --
|
1089
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000083)
|
1090
|
+
"""
|
1091
|
+
return cls._namespace_CDAO('CDAO_0000083')
|
1092
|
+
|
1093
|
+
@classmethod
|
1094
|
+
def StarTree(cls):
|
1095
|
+
"""-- No comment or description provided. --
|
1096
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000084)
|
1097
|
+
"""
|
1098
|
+
return cls._namespace_CDAO('CDAO_0000084')
|
1099
|
+
|
1100
|
+
@classmethod
|
1101
|
+
def FullyResolvedUnrootedTree(cls):
|
1102
|
+
"""-- No comment or description provided. --
|
1103
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000085)
|
1104
|
+
"""
|
1105
|
+
return cls._namespace_CDAO('CDAO_0000085')
|
1106
|
+
|
1107
|
+
@classmethod
|
1108
|
+
def ParaphyleticGroup(cls):
|
1109
|
+
"""-- No comment or description provided. --
|
1110
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000086)
|
1111
|
+
"""
|
1112
|
+
return cls._namespace_CDAO('CDAO_0000086')
|
1113
|
+
|
1114
|
+
@classmethod
|
1115
|
+
def geneticEvent(cls):
|
1116
|
+
"""-- No comment or description provided. --
|
1117
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000087)
|
1118
|
+
"""
|
1119
|
+
return cls._namespace_CDAO('CDAO_0000087')
|
1120
|
+
|
1121
|
+
@classmethod
|
1122
|
+
def UnrootedTree(cls):
|
1123
|
+
"""-- No comment or description provided. --
|
1124
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000088)
|
1125
|
+
"""
|
1126
|
+
return cls._namespace_CDAO('CDAO_0000088')
|
1127
|
+
|
1128
|
+
@classmethod
|
1129
|
+
def CategoricalStateDatum(cls):
|
1130
|
+
"""-- No comment or description provided. --
|
1131
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000089)
|
1132
|
+
"""
|
1133
|
+
return cls._namespace_CDAO('CDAO_0000089')
|
1134
|
+
|
1135
|
+
@classmethod
|
1136
|
+
def DiscreteCharLikelihoodLengthType(cls):
|
1137
|
+
"""-- No comment or description provided. --
|
1138
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000090)
|
1139
|
+
"""
|
1140
|
+
return cls._namespace_CDAO('CDAO_0000090')
|
1141
|
+
|
1142
|
+
@classmethod
|
1143
|
+
def CharacterStateDomain(cls):
|
1144
|
+
"""-- No comment or description provided. --
|
1145
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000091)
|
1146
|
+
"""
|
1147
|
+
return cls._namespace_CDAO('CDAO_0000091')
|
1148
|
+
|
1149
|
+
@classmethod
|
1150
|
+
def CoordinateList(cls):
|
1151
|
+
"""-- No comment or description provided. --
|
1152
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000092)
|
1153
|
+
"""
|
1154
|
+
return cls._namespace_CDAO('CDAO_0000092')
|
1155
|
+
|
1156
|
+
@classmethod
|
1157
|
+
def GammaDistribution(cls):
|
1158
|
+
"""-- No comment or description provided. --
|
1159
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000093)
|
1160
|
+
"""
|
1161
|
+
return cls._namespace_CDAO('CDAO_0000093')
|
1162
|
+
|
1163
|
+
@classmethod
|
1164
|
+
def DesoxiRibonucleotideResidueCharacter(cls):
|
1165
|
+
"""-- No comment or description provided. --
|
1166
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000094)
|
1167
|
+
"""
|
1168
|
+
return cls._namespace_CDAO('CDAO_0000094')
|
1169
|
+
|
1170
|
+
@classmethod
|
1171
|
+
def CoordinateRange(cls):
|
1172
|
+
"""-- No comment or description provided. --
|
1173
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000095)
|
1174
|
+
"""
|
1175
|
+
return cls._namespace_CDAO('CDAO_0000095')
|
1176
|
+
|
1177
|
+
@classmethod
|
1178
|
+
def ReticulateEvolution(cls):
|
1179
|
+
"""-- No comment or description provided. --
|
1180
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000096)
|
1181
|
+
"""
|
1182
|
+
return cls._namespace_CDAO('CDAO_0000096')
|
1183
|
+
|
1184
|
+
@classmethod
|
1185
|
+
def hereditaryChange(cls):
|
1186
|
+
"""-- No comment or description provided. --
|
1187
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000097)
|
1188
|
+
"""
|
1189
|
+
return cls._namespace_CDAO('CDAO_0000097')
|
1190
|
+
|
1191
|
+
@classmethod
|
1192
|
+
def CharacterStateDatum(cls):
|
1193
|
+
"""-- No comment or description provided. --
|
1194
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000098)
|
1195
|
+
"""
|
1196
|
+
return cls._namespace_CDAO('CDAO_0000098')
|
1197
|
+
|
1198
|
+
@classmethod
|
1199
|
+
def Edge(cls):
|
1200
|
+
"""-- No comment or description provided. --
|
1201
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000099)
|
1202
|
+
"""
|
1203
|
+
return cls._namespace_CDAO('CDAO_0000099')
|
1204
|
+
|
1205
|
+
@classmethod
|
1206
|
+
def DiscreteCharacterLengthType(cls):
|
1207
|
+
"""-- No comment or description provided. --
|
1208
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000100)
|
1209
|
+
"""
|
1210
|
+
return cls._namespace_CDAO('CDAO_0000100')
|
1211
|
+
|
1212
|
+
@classmethod
|
1213
|
+
def EdgeAnnotation(cls):
|
1214
|
+
"""-- No comment or description provided. --
|
1215
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000101)
|
1216
|
+
"""
|
1217
|
+
return cls._namespace_CDAO('CDAO_0000101')
|
1218
|
+
|
1219
|
+
@classmethod
|
1220
|
+
def FullyResolvedRootedTree(cls):
|
1221
|
+
"""-- No comment or description provided. --
|
1222
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000102)
|
1223
|
+
"""
|
1224
|
+
return cls._namespace_CDAO('CDAO_0000102')
|
1225
|
+
|
1226
|
+
@classmethod
|
1227
|
+
def GrafenLengthType(cls):
|
1228
|
+
"""-- No comment or description provided. --
|
1229
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000103)
|
1230
|
+
"""
|
1231
|
+
return cls._namespace_CDAO('CDAO_0000103')
|
1232
|
+
|
1233
|
+
@classmethod
|
1234
|
+
def CoordinateSystem(cls):
|
1235
|
+
"""-- No comment or description provided. --
|
1236
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000104)
|
1237
|
+
"""
|
1238
|
+
return cls._namespace_CDAO('CDAO_0000104')
|
1239
|
+
|
1240
|
+
@classmethod
|
1241
|
+
def GenBankDataMatrix(cls):
|
1242
|
+
"""-- No comment or description provided. --
|
1243
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000105)
|
1244
|
+
"""
|
1245
|
+
return cls._namespace_CDAO('CDAO_0000105')
|
1246
|
+
|
1247
|
+
@classmethod
|
1248
|
+
def DataMatrixFormat(cls):
|
1249
|
+
"""-- No comment or description provided. --
|
1250
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000107)
|
1251
|
+
"""
|
1252
|
+
return cls._namespace_CDAO('CDAO_0000107')
|
1253
|
+
|
1254
|
+
@classmethod
|
1255
|
+
def TerminalNode(cls):
|
1256
|
+
"""-- No comment or description provided. --
|
1257
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000108)
|
1258
|
+
"""
|
1259
|
+
return cls._namespace_CDAO('CDAO_0000108')
|
1260
|
+
|
1261
|
+
@classmethod
|
1262
|
+
def RibonucleotideResidueCharacter(cls):
|
1263
|
+
"""-- No comment or description provided. --
|
1264
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000109)
|
1265
|
+
"""
|
1266
|
+
return cls._namespace_CDAO('CDAO_0000109')
|
1267
|
+
|
1268
|
+
@classmethod
|
1269
|
+
def Tree(cls):
|
1270
|
+
"""-- No comment or description provided. --
|
1271
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000110)
|
1272
|
+
"""
|
1273
|
+
return cls._namespace_CDAO('CDAO_0000110')
|
1274
|
+
|
1275
|
+
@classmethod
|
1276
|
+
def CategoricalCharacter(cls):
|
1277
|
+
"""-- No comment or description provided. --
|
1278
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000111)
|
1279
|
+
"""
|
1280
|
+
return cls._namespace_CDAO('CDAO_0000111')
|
1281
|
+
|
1282
|
+
@classmethod
|
1283
|
+
def AminoAcidResidueStateDatum(cls):
|
1284
|
+
"""-- No comment or description provided. --
|
1285
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000112)
|
1286
|
+
"""
|
1287
|
+
return cls._namespace_CDAO('CDAO_0000112')
|
1288
|
+
|
1289
|
+
@classmethod
|
1290
|
+
def PHYLIPDataMatrix(cls):
|
1291
|
+
"""-- No comment or description provided. --
|
1292
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000113)
|
1293
|
+
"""
|
1294
|
+
return cls._namespace_CDAO('CDAO_0000113')
|
1295
|
+
|
1296
|
+
@classmethod
|
1297
|
+
def ContinuousCharLikelihoodLengthType(cls):
|
1298
|
+
"""-- No comment or description provided. --
|
1299
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000114)
|
1300
|
+
"""
|
1301
|
+
return cls._namespace_CDAO('CDAO_0000114')
|
1302
|
+
|
1303
|
+
@classmethod
|
1304
|
+
def MolecularCharacter(cls):
|
1305
|
+
"""-- No comment or description provided. --
|
1306
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000115)
|
1307
|
+
"""
|
1308
|
+
return cls._namespace_CDAO('CDAO_0000115')
|
1309
|
+
|
1310
|
+
@classmethod
|
1311
|
+
def hereditaryPersistance(cls):
|
1312
|
+
"""-- No comment or description provided. --
|
1313
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000116)
|
1314
|
+
"""
|
1315
|
+
return cls._namespace_CDAO('CDAO_0000116')
|
1316
|
+
|
1317
|
+
@classmethod
|
1318
|
+
def SetOfCharacters(cls):
|
1319
|
+
"""-- No comment or description provided. --
|
1320
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000117)
|
1321
|
+
"""
|
1322
|
+
return cls._namespace_CDAO('CDAO_0000117')
|
1323
|
+
|
1324
|
+
@classmethod
|
1325
|
+
def SetOfThings(cls):
|
1326
|
+
"""-- No comment or description provided. --
|
1327
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000118)
|
1328
|
+
"""
|
1329
|
+
return cls._namespace_CDAO('CDAO_0000118')
|
1330
|
+
|
1331
|
+
@classmethod
|
1332
|
+
def Sequence(cls):
|
1333
|
+
"""-- No comment or description provided. --
|
1334
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000120)
|
1335
|
+
"""
|
1336
|
+
return cls._namespace_CDAO('CDAO_0000120')
|
1337
|
+
|
1338
|
+
@classmethod
|
1339
|
+
def speciation(cls):
|
1340
|
+
"""-- No comment or description provided. --
|
1341
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000121)
|
1342
|
+
"""
|
1343
|
+
return cls._namespace_CDAO('CDAO_0000121')
|
1344
|
+
|
1345
|
+
@classmethod
|
1346
|
+
def cladogenesis(cls):
|
1347
|
+
"""-- No comment or description provided. --
|
1348
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000122)
|
1349
|
+
"""
|
1350
|
+
return cls._namespace_CDAO('CDAO_0000122')
|
1351
|
+
|
1352
|
+
@classmethod
|
1353
|
+
def Bifurcation(cls):
|
1354
|
+
"""-- No comment or description provided. --
|
1355
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000124)
|
1356
|
+
"""
|
1357
|
+
return cls._namespace_CDAO('CDAO_0000124')
|
1358
|
+
|
1359
|
+
@classmethod
|
1360
|
+
def DiscreteCharBayesianLengthType(cls):
|
1361
|
+
"""-- No comment or description provided. --
|
1362
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000125)
|
1363
|
+
"""
|
1364
|
+
return cls._namespace_CDAO('CDAO_0000125')
|
1365
|
+
|
1366
|
+
@classmethod
|
1367
|
+
def TaxonomicLink(cls):
|
1368
|
+
"""-- No comment or description provided. --
|
1369
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000126)
|
1370
|
+
"""
|
1371
|
+
return cls._namespace_CDAO('CDAO_0000126')
|
1372
|
+
|
1373
|
+
@classmethod
|
1374
|
+
def MonophyleticGroup(cls):
|
1375
|
+
"""-- No comment or description provided. --
|
1376
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000127)
|
1377
|
+
"""
|
1378
|
+
return cls._namespace_CDAO('CDAO_0000127')
|
1379
|
+
|
1380
|
+
@classmethod
|
1381
|
+
def molecularRecombination(cls):
|
1382
|
+
"""-- No comment or description provided. --
|
1383
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000128)
|
1384
|
+
"""
|
1385
|
+
return cls._namespace_CDAO('CDAO_0000128')
|
1386
|
+
|
1387
|
+
@classmethod
|
1388
|
+
def HolophyleticGroup(cls):
|
1389
|
+
"""-- No comment or description provided. --
|
1390
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000129)
|
1391
|
+
"""
|
1392
|
+
return cls._namespace_CDAO('CDAO_0000129')
|
1393
|
+
|
1394
|
+
@classmethod
|
1395
|
+
def FullyResolvedTree(cls):
|
1396
|
+
"""-- No comment or description provided. --
|
1397
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000130)
|
1398
|
+
"""
|
1399
|
+
return cls._namespace_CDAO('CDAO_0000130')
|
1400
|
+
|
1401
|
+
@classmethod
|
1402
|
+
def AminoAcidResidueCharacter(cls):
|
1403
|
+
"""-- No comment or description provided. --
|
1404
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000131)
|
1405
|
+
"""
|
1406
|
+
return cls._namespace_CDAO('CDAO_0000131')
|
1407
|
+
|
1408
|
+
@classmethod
|
1409
|
+
def recombination(cls):
|
1410
|
+
"""-- No comment or description provided. --
|
1411
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000132)
|
1412
|
+
"""
|
1413
|
+
return cls._namespace_CDAO('CDAO_0000132')
|
1414
|
+
|
1415
|
+
@classmethod
|
1416
|
+
def DesoxiRibonucleotideResidue(cls):
|
1417
|
+
"""-- No comment or description provided. --
|
1418
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000133)
|
1419
|
+
"""
|
1420
|
+
return cls._namespace_CDAO('CDAO_0000133')
|
1421
|
+
|
1422
|
+
@classmethod
|
1423
|
+
def RootedSubtree(cls):
|
1424
|
+
"""-- No comment or description provided. --
|
1425
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000134)
|
1426
|
+
"""
|
1427
|
+
return cls._namespace_CDAO('CDAO_0000134')
|
1428
|
+
|
1429
|
+
@classmethod
|
1430
|
+
def CompoundStateDatum(cls):
|
1431
|
+
"""-- No comment or description provided. --
|
1432
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000136)
|
1433
|
+
"""
|
1434
|
+
return cls._namespace_CDAO('CDAO_0000136')
|
1435
|
+
|
1436
|
+
@classmethod
|
1437
|
+
def GapCost(cls):
|
1438
|
+
"""-- No comment or description provided. --
|
1439
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000137)
|
1440
|
+
"""
|
1441
|
+
return cls._namespace_CDAO('CDAO_0000137')
|
1442
|
+
|
1443
|
+
@classmethod
|
1444
|
+
def TU(cls):
|
1445
|
+
"""-- No comment or description provided. --
|
1446
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000138)
|
1447
|
+
"""
|
1448
|
+
return cls._namespace_CDAO('CDAO_0000138')
|
1449
|
+
|
1450
|
+
@classmethod
|
1451
|
+
def DirectedEdge(cls):
|
1452
|
+
"""-- No comment or description provided. --
|
1453
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000139)
|
1454
|
+
"""
|
1455
|
+
return cls._namespace_CDAO('CDAO_0000139')
|
1456
|
+
|
1457
|
+
@classmethod
|
1458
|
+
def Node(cls):
|
1459
|
+
"""-- No comment or description provided. --
|
1460
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000140)
|
1461
|
+
"""
|
1462
|
+
return cls._namespace_CDAO('CDAO_0000140')
|
1463
|
+
|
1464
|
+
@classmethod
|
1465
|
+
def ContinuousCharDistanceLengthType(cls):
|
1466
|
+
"""-- No comment or description provided. --
|
1467
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000141)
|
1468
|
+
"""
|
1469
|
+
return cls._namespace_CDAO('CDAO_0000141')
|
1470
|
+
|
1471
|
+
@classmethod
|
1472
|
+
def dA(cls):
|
1473
|
+
"""-- No comment or description provided. --
|
1474
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000220)
|
1475
|
+
"""
|
1476
|
+
return cls._namespace_CDAO('CDAO_0000220')
|
1477
|
+
|
1478
|
+
@classmethod
|
1479
|
+
def absent(cls):
|
1480
|
+
"""-- No comment or description provided. --
|
1481
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000221)
|
1482
|
+
"""
|
1483
|
+
return cls._namespace_CDAO('CDAO_0000221')
|
1484
|
+
|
1485
|
+
@classmethod
|
1486
|
+
def unknown(cls):
|
1487
|
+
"""-- No comment or description provided. --
|
1488
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000222)
|
1489
|
+
"""
|
1490
|
+
return cls._namespace_CDAO('CDAO_0000222')
|
1491
|
+
|
1492
|
+
@classmethod
|
1493
|
+
def gap(cls):
|
1494
|
+
"""-- No comment or description provided. --
|
1495
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000223)
|
1496
|
+
"""
|
1497
|
+
return cls._namespace_CDAO('CDAO_0000223')
|
1498
|
+
|
1499
|
+
@classmethod
|
1500
|
+
def dG(cls):
|
1501
|
+
"""-- No comment or description provided. --
|
1502
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000224)
|
1503
|
+
"""
|
1504
|
+
return cls._namespace_CDAO('CDAO_0000224')
|
1505
|
+
|
1506
|
+
@classmethod
|
1507
|
+
def rU(cls):
|
1508
|
+
"""-- No comment or description provided. --
|
1509
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000225)
|
1510
|
+
"""
|
1511
|
+
return cls._namespace_CDAO('CDAO_0000225')
|
1512
|
+
|
1513
|
+
@classmethod
|
1514
|
+
def dC(cls):
|
1515
|
+
"""-- No comment or description provided. --
|
1516
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000226)
|
1517
|
+
"""
|
1518
|
+
return cls._namespace_CDAO('CDAO_0000226')
|
1519
|
+
|
1520
|
+
@classmethod
|
1521
|
+
def dT(cls):
|
1522
|
+
"""-- No comment or description provided. --
|
1523
|
+
(cls, http://purl.obolibrary.org/obo/CDAO_0000227)
|
1524
|
+
"""
|
1525
|
+
return cls._namespace_CDAO('CDAO_0000227')
|
1526
|
+
|
1527
|
+
@classmethod
|
1528
|
+
def is_object_property(cls, uri):
|
1529
|
+
"""Determines whether the given URI is an object property.
|
1530
|
+
|
1531
|
+
uri -- URI that is tested for being an object property
|
1532
|
+
"""
|
1533
|
+
if uri == cls._namespace_CDAO('CDAO_0000142'):
|
1534
|
+
return True
|
1535
|
+
if uri == cls._namespace_CDAO('CDAO_0000143'):
|
1536
|
+
return True
|
1537
|
+
if uri == cls._namespace_CDAO('CDAO_0000144'):
|
1538
|
+
return True
|
1539
|
+
if uri == cls._namespace_CDAO('CDAO_0000145'):
|
1540
|
+
return True
|
1541
|
+
if uri == cls._namespace_CDAO('CDAO_0000146'):
|
1542
|
+
return True
|
1543
|
+
if uri == cls._namespace_CDAO('CDAO_0000147'):
|
1544
|
+
return True
|
1545
|
+
if uri == cls._namespace_CDAO('CDAO_0000148'):
|
1546
|
+
return True
|
1547
|
+
if uri == cls._namespace_CDAO('CDAO_0000149'):
|
1548
|
+
return True
|
1549
|
+
if uri == cls._namespace_CDAO('CDAO_0000150'):
|
1550
|
+
return True
|
1551
|
+
if uri == cls._namespace_CDAO('CDAO_0000151'):
|
1552
|
+
return True
|
1553
|
+
if uri == cls._namespace_CDAO('CDAO_0000152'):
|
1554
|
+
return True
|
1555
|
+
if uri == cls._namespace_CDAO('CDAO_0000153'):
|
1556
|
+
return True
|
1557
|
+
if uri == cls._namespace_CDAO('CDAO_0000154'):
|
1558
|
+
return True
|
1559
|
+
if uri == cls._namespace_CDAO('CDAO_0000155'):
|
1560
|
+
return True
|
1561
|
+
if uri == cls._namespace_CDAO('CDAO_0000156'):
|
1562
|
+
return True
|
1563
|
+
if uri == cls._namespace_CDAO('CDAO_0000157'):
|
1564
|
+
return True
|
1565
|
+
if uri == cls._namespace_CDAO('CDAO_0000158'):
|
1566
|
+
return True
|
1567
|
+
if uri == cls._namespace_CDAO('CDAO_0000159'):
|
1568
|
+
return True
|
1569
|
+
if uri == cls._namespace_CDAO('CDAO_0000160'):
|
1570
|
+
return True
|
1571
|
+
if uri == cls._namespace_CDAO('CDAO_0000161'):
|
1572
|
+
return True
|
1573
|
+
if uri == cls._namespace_CDAO('CDAO_0000162'):
|
1574
|
+
return True
|
1575
|
+
if uri == cls._namespace_CDAO('CDAO_0000163'):
|
1576
|
+
return True
|
1577
|
+
if uri == cls._namespace_CDAO('CDAO_0000164'):
|
1578
|
+
return True
|
1579
|
+
if uri == cls._namespace_CDAO('CDAO_0000165'):
|
1580
|
+
return True
|
1581
|
+
if uri == cls._namespace_CDAO('CDAO_0000166'):
|
1582
|
+
return True
|
1583
|
+
if uri == cls._namespace_CDAO('CDAO_0000167'):
|
1584
|
+
return True
|
1585
|
+
if uri == cls._namespace_CDAO('CDAO_0000168'):
|
1586
|
+
return True
|
1587
|
+
if uri == cls._namespace_CDAO('CDAO_0000169'):
|
1588
|
+
return True
|
1589
|
+
if uri == cls._namespace_CDAO('CDAO_0000170'):
|
1590
|
+
return True
|
1591
|
+
if uri == cls._namespace_CDAO('CDAO_0000171'):
|
1592
|
+
return True
|
1593
|
+
if uri == cls._namespace_CDAO('CDAO_0000172'):
|
1594
|
+
return True
|
1595
|
+
if uri == cls._namespace_CDAO('CDAO_0000173'):
|
1596
|
+
return True
|
1597
|
+
if uri == cls._namespace_CDAO('CDAO_0000174'):
|
1598
|
+
return True
|
1599
|
+
if uri == cls._namespace_CDAO('CDAO_0000175'):
|
1600
|
+
return True
|
1601
|
+
if uri == cls._namespace_CDAO('CDAO_0000176'):
|
1602
|
+
return True
|
1603
|
+
if uri == cls._namespace_CDAO('CDAO_0000177'):
|
1604
|
+
return True
|
1605
|
+
if uri == cls._namespace_CDAO('CDAO_0000178'):
|
1606
|
+
return True
|
1607
|
+
if uri == cls._namespace_CDAO('CDAO_0000179'):
|
1608
|
+
return True
|
1609
|
+
if uri == cls._namespace_CDAO('CDAO_0000180'):
|
1610
|
+
return True
|
1611
|
+
if uri == cls._namespace_CDAO('CDAO_0000181'):
|
1612
|
+
return True
|
1613
|
+
if uri == cls._namespace_CDAO('CDAO_0000182'):
|
1614
|
+
return True
|
1615
|
+
if uri == cls._namespace_CDAO('CDAO_0000183'):
|
1616
|
+
return True
|
1617
|
+
if uri == cls._namespace_CDAO('CDAO_0000184'):
|
1618
|
+
return True
|
1619
|
+
if uri == cls._namespace_CDAO('CDAO_0000185'):
|
1620
|
+
return True
|
1621
|
+
if uri == cls._namespace_CDAO('CDAO_0000186'):
|
1622
|
+
return True
|
1623
|
+
if uri == cls._namespace_CDAO('CDAO_0000187'):
|
1624
|
+
return True
|
1625
|
+
if uri == cls._namespace_CDAO('CDAO_0000188'):
|
1626
|
+
return True
|
1627
|
+
if uri == cls._namespace_CDAO('CDAO_0000189'):
|
1628
|
+
return True
|
1629
|
+
if uri == cls._namespace_CDAO('CDAO_0000190'):
|
1630
|
+
return True
|
1631
|
+
if uri == cls._namespace_CDAO('CDAO_0000191'):
|
1632
|
+
return True
|
1633
|
+
if uri == cls._namespace_CDAO('CDAO_0000192'):
|
1634
|
+
return True
|
1635
|
+
if uri == cls._namespace_CDAO('CDAO_0000193'):
|
1636
|
+
return True
|
1637
|
+
if uri == cls._namespace_CDAO('CDAO_0000194'):
|
1638
|
+
return True
|
1639
|
+
if uri == cls._namespace_CDAO('CDAO_0000195'):
|
1640
|
+
return True
|
1641
|
+
if uri == cls._namespace_CDAO('CDAO_0000196'):
|
1642
|
+
return True
|
1643
|
+
if uri == cls._namespace_CDAO('CDAO_0000197'):
|
1644
|
+
return True
|
1645
|
+
if uri == cls._namespace_CDAO('CDAO_0000198'):
|
1646
|
+
return True
|
1647
|
+
if uri == cls._namespace_CDAO('CDAO_0000199'):
|
1648
|
+
return True
|
1649
|
+
if uri == cls._namespace_CDAO('CDAO_0000200'):
|
1650
|
+
return True
|
1651
|
+
if uri == cls._namespace_CDAO('CDAO_0000201'):
|
1652
|
+
return True
|
1653
|
+
if uri == cls._namespace_CDAO('CDAO_0000202'):
|
1654
|
+
return True
|
1655
|
+
if uri == cls._namespace_CDAO('CDAO_0000203'):
|
1656
|
+
return True
|
1657
|
+
if uri == cls._namespace_CDAO('CDAO_0000204'):
|
1658
|
+
return True
|
1659
|
+
if uri == cls._namespace_CDAO('CDAO_0000205'):
|
1660
|
+
return True
|
1661
|
+
if uri == cls._namespace_CDAO('CDAO_0000206'):
|
1662
|
+
return True
|
1663
|
+
if uri == cls._namespace_CDAO('CDAO_0000207'):
|
1664
|
+
return True
|
1665
|
+
if uri == cls._namespace_CDAO('CDAO_0000208'):
|
1666
|
+
return True
|
1667
|
+
if uri == cls._namespace_CDAO('CDAO_0000209'):
|
1668
|
+
return True
|
1669
|
+
if uri == cls._namespace_CDAO('CDAO_0000210'):
|
1670
|
+
return True
|
1671
|
+
return False
|
1672
|
+
|
1673
|
+
@classmethod
|
1674
|
+
def is_datatype_property(cls, uri):
|
1675
|
+
"""Determines whether the given URI is a datatype property.
|
1676
|
+
|
1677
|
+
uri -- URI that is tested for being a datatype property
|
1678
|
+
"""
|
1679
|
+
if uri == cls._namespace_CDAO('CDAO_0000211'):
|
1680
|
+
return True
|
1681
|
+
if uri == cls._namespace_CDAO('CDAO_0000212'):
|
1682
|
+
return True
|
1683
|
+
if uri == cls._namespace_CDAO('CDAO_0000213'):
|
1684
|
+
return True
|
1685
|
+
if uri == cls._namespace_CDAO('CDAO_0000214'):
|
1686
|
+
return True
|
1687
|
+
if uri == cls._namespace_CDAO('CDAO_0000215'):
|
1688
|
+
return True
|
1689
|
+
if uri == cls._namespace_CDAO('CDAO_0000216'):
|
1690
|
+
return True
|
1691
|
+
if uri == cls._namespace_CDAO('CDAO_0000217'):
|
1692
|
+
return True
|
1693
|
+
if uri == cls._namespace_CDAO('CDAO_0000218'):
|
1694
|
+
return True
|
1695
|
+
if uri == cls._namespace_CDAO('CDAO_0000219'):
|
1696
|
+
return True
|
1697
|
+
return False
|
1698
|
+
|
1699
|
+
@classmethod
|
1700
|
+
def is_class(cls, uri):
|
1701
|
+
"""Determines whether the given URI is a class.
|
1702
|
+
|
1703
|
+
uri -- URI that is tested for being a class
|
1704
|
+
"""
|
1705
|
+
if uri == cls._namespace_CDAO('CDAO_0000002'):
|
1706
|
+
return True
|
1707
|
+
if uri == cls._namespace_CDAO('CDAO_0000003'):
|
1708
|
+
return True
|
1709
|
+
if uri == cls._namespace_CDAO('CDAO_0000004'):
|
1710
|
+
return True
|
1711
|
+
if uri == cls._namespace_CDAO('CDAO_0000005'):
|
1712
|
+
return True
|
1713
|
+
if uri == cls._namespace_CDAO('CDAO_0000006'):
|
1714
|
+
return True
|
1715
|
+
if uri == cls._namespace_CDAO('CDAO_0000007'):
|
1716
|
+
return True
|
1717
|
+
if uri == cls._namespace_CDAO('CDAO_0000008'):
|
1718
|
+
return True
|
1719
|
+
if uri == cls._namespace_CDAO('CDAO_0000009'):
|
1720
|
+
return True
|
1721
|
+
if uri == cls._namespace_CDAO('CDAO_0000010'):
|
1722
|
+
return True
|
1723
|
+
if uri == cls._namespace_CDAO('CDAO_0000011'):
|
1724
|
+
return True
|
1725
|
+
if uri == cls._namespace_CDAO('CDAO_0000012'):
|
1726
|
+
return True
|
1727
|
+
if uri == cls._namespace_CDAO('CDAO_0000013'):
|
1728
|
+
return True
|
1729
|
+
if uri == cls._namespace_CDAO('CDAO_0000014'):
|
1730
|
+
return True
|
1731
|
+
if uri == cls._namespace_CDAO('CDAO_0000015'):
|
1732
|
+
return True
|
1733
|
+
if uri == cls._namespace_CDAO('CDAO_0000016'):
|
1734
|
+
return True
|
1735
|
+
if uri == cls._namespace_CDAO('CDAO_0000017'):
|
1736
|
+
return True
|
1737
|
+
if uri == cls._namespace_CDAO('CDAO_0000018'):
|
1738
|
+
return True
|
1739
|
+
if uri == cls._namespace_CDAO('CDAO_0000019'):
|
1740
|
+
return True
|
1741
|
+
if uri == cls._namespace_CDAO('CDAO_0000020'):
|
1742
|
+
return True
|
1743
|
+
if uri == cls._namespace_CDAO('CDAO_0000021'):
|
1744
|
+
return True
|
1745
|
+
if uri == cls._namespace_CDAO('CDAO_0000022'):
|
1746
|
+
return True
|
1747
|
+
if uri == cls._namespace_CDAO('CDAO_0000023'):
|
1748
|
+
return True
|
1749
|
+
if uri == cls._namespace_CDAO('CDAO_0000024'):
|
1750
|
+
return True
|
1751
|
+
if uri == cls._namespace_CDAO('CDAO_0000025'):
|
1752
|
+
return True
|
1753
|
+
if uri == cls._namespace_CDAO('CDAO_0000026'):
|
1754
|
+
return True
|
1755
|
+
if uri == cls._namespace_CDAO('CDAO_0000027'):
|
1756
|
+
return True
|
1757
|
+
if uri == cls._namespace_CDAO('CDAO_0000029'):
|
1758
|
+
return True
|
1759
|
+
if uri == cls._namespace_CDAO('CDAO_0000030'):
|
1760
|
+
return True
|
1761
|
+
if uri == cls._namespace_CDAO('CDAO_0000031'):
|
1762
|
+
return True
|
1763
|
+
if uri == cls._namespace_CDAO('CDAO_0000032'):
|
1764
|
+
return True
|
1765
|
+
if uri == cls._namespace_CDAO('CDAO_0000033'):
|
1766
|
+
return True
|
1767
|
+
if uri == cls._namespace_CDAO('CDAO_0000034'):
|
1768
|
+
return True
|
1769
|
+
if uri == cls._namespace_CDAO('CDAO_0000035'):
|
1770
|
+
return True
|
1771
|
+
if uri == cls._namespace_CDAO('CDAO_0000039'):
|
1772
|
+
return True
|
1773
|
+
if uri == cls._namespace_CDAO('CDAO_0000040'):
|
1774
|
+
return True
|
1775
|
+
if uri == cls._namespace_CDAO('CDAO_0000041'):
|
1776
|
+
return True
|
1777
|
+
if uri == cls._namespace_CDAO('CDAO_0000042'):
|
1778
|
+
return True
|
1779
|
+
if uri == cls._namespace_CDAO('CDAO_0000043'):
|
1780
|
+
return True
|
1781
|
+
if uri == cls._namespace_CDAO('CDAO_0000044'):
|
1782
|
+
return True
|
1783
|
+
if uri == cls._namespace_CDAO('CDAO_0000045'):
|
1784
|
+
return True
|
1785
|
+
if uri == cls._namespace_CDAO('CDAO_0000046'):
|
1786
|
+
return True
|
1787
|
+
if uri == cls._namespace_CDAO('CDAO_0000047'):
|
1788
|
+
return True
|
1789
|
+
if uri == cls._namespace_CDAO('CDAO_0000048'):
|
1790
|
+
return True
|
1791
|
+
if uri == cls._namespace_CDAO('CDAO_0000049'):
|
1792
|
+
return True
|
1793
|
+
if uri == cls._namespace_CDAO('CDAO_0000050'):
|
1794
|
+
return True
|
1795
|
+
if uri == cls._namespace_CDAO('CDAO_0000051'):
|
1796
|
+
return True
|
1797
|
+
if uri == cls._namespace_CDAO('CDAO_0000052'):
|
1798
|
+
return True
|
1799
|
+
if uri == cls._namespace_CDAO('CDAO_0000053'):
|
1800
|
+
return True
|
1801
|
+
if uri == cls._namespace_CDAO('CDAO_0000055'):
|
1802
|
+
return True
|
1803
|
+
if uri == cls._namespace_CDAO('CDAO_0000056'):
|
1804
|
+
return True
|
1805
|
+
if uri == cls._namespace_CDAO('CDAO_0000057'):
|
1806
|
+
return True
|
1807
|
+
if uri == cls._namespace_CDAO('CDAO_0000058'):
|
1808
|
+
return True
|
1809
|
+
if uri == cls._namespace_CDAO('CDAO_0000059'):
|
1810
|
+
return True
|
1811
|
+
if uri == cls._namespace_CDAO('CDAO_0000060'):
|
1812
|
+
return True
|
1813
|
+
if uri == cls._namespace_CDAO('CDAO_0000061'):
|
1814
|
+
return True
|
1815
|
+
if uri == cls._namespace_CDAO('CDAO_0000062'):
|
1816
|
+
return True
|
1817
|
+
if uri == cls._namespace_CDAO('CDAO_0000063'):
|
1818
|
+
return True
|
1819
|
+
if uri == cls._namespace_CDAO('CDAO_0000064'):
|
1820
|
+
return True
|
1821
|
+
if uri == cls._namespace_CDAO('CDAO_0000065'):
|
1822
|
+
return True
|
1823
|
+
if uri == cls._namespace_CDAO('CDAO_0000066'):
|
1824
|
+
return True
|
1825
|
+
if uri == cls._namespace_CDAO('CDAO_0000067'):
|
1826
|
+
return True
|
1827
|
+
if uri == cls._namespace_CDAO('CDAO_0000068'):
|
1828
|
+
return True
|
1829
|
+
if uri == cls._namespace_CDAO('CDAO_0000069'):
|
1830
|
+
return True
|
1831
|
+
if uri == cls._namespace_CDAO('CDAO_0000070'):
|
1832
|
+
return True
|
1833
|
+
if uri == cls._namespace_CDAO('CDAO_0000071'):
|
1834
|
+
return True
|
1835
|
+
if uri == cls._namespace_CDAO('CDAO_0000072'):
|
1836
|
+
return True
|
1837
|
+
if uri == cls._namespace_CDAO('CDAO_0000073'):
|
1838
|
+
return True
|
1839
|
+
if uri == cls._namespace_CDAO('CDAO_0000074'):
|
1840
|
+
return True
|
1841
|
+
if uri == cls._namespace_CDAO('CDAO_0000075'):
|
1842
|
+
return True
|
1843
|
+
if uri == cls._namespace_CDAO('CDAO_0000076'):
|
1844
|
+
return True
|
1845
|
+
if uri == cls._namespace_CDAO('CDAO_0000077'):
|
1846
|
+
return True
|
1847
|
+
if uri == cls._namespace_CDAO('CDAO_0000078'):
|
1848
|
+
return True
|
1849
|
+
if uri == cls._namespace_CDAO('CDAO_0000079'):
|
1850
|
+
return True
|
1851
|
+
if uri == cls._namespace_CDAO('CDAO_0000080'):
|
1852
|
+
return True
|
1853
|
+
if uri == cls._namespace_CDAO('CDAO_0000081'):
|
1854
|
+
return True
|
1855
|
+
if uri == cls._namespace_CDAO('CDAO_0000082'):
|
1856
|
+
return True
|
1857
|
+
if uri == cls._namespace_CDAO('CDAO_0000083'):
|
1858
|
+
return True
|
1859
|
+
if uri == cls._namespace_CDAO('CDAO_0000084'):
|
1860
|
+
return True
|
1861
|
+
if uri == cls._namespace_CDAO('CDAO_0000085'):
|
1862
|
+
return True
|
1863
|
+
if uri == cls._namespace_CDAO('CDAO_0000086'):
|
1864
|
+
return True
|
1865
|
+
if uri == cls._namespace_CDAO('CDAO_0000087'):
|
1866
|
+
return True
|
1867
|
+
if uri == cls._namespace_CDAO('CDAO_0000088'):
|
1868
|
+
return True
|
1869
|
+
if uri == cls._namespace_CDAO('CDAO_0000089'):
|
1870
|
+
return True
|
1871
|
+
if uri == cls._namespace_CDAO('CDAO_0000090'):
|
1872
|
+
return True
|
1873
|
+
if uri == cls._namespace_CDAO('CDAO_0000091'):
|
1874
|
+
return True
|
1875
|
+
if uri == cls._namespace_CDAO('CDAO_0000092'):
|
1876
|
+
return True
|
1877
|
+
if uri == cls._namespace_CDAO('CDAO_0000093'):
|
1878
|
+
return True
|
1879
|
+
if uri == cls._namespace_CDAO('CDAO_0000094'):
|
1880
|
+
return True
|
1881
|
+
if uri == cls._namespace_CDAO('CDAO_0000095'):
|
1882
|
+
return True
|
1883
|
+
if uri == cls._namespace_CDAO('CDAO_0000096'):
|
1884
|
+
return True
|
1885
|
+
if uri == cls._namespace_CDAO('CDAO_0000097'):
|
1886
|
+
return True
|
1887
|
+
if uri == cls._namespace_CDAO('CDAO_0000098'):
|
1888
|
+
return True
|
1889
|
+
if uri == cls._namespace_CDAO('CDAO_0000099'):
|
1890
|
+
return True
|
1891
|
+
if uri == cls._namespace_CDAO('CDAO_0000100'):
|
1892
|
+
return True
|
1893
|
+
if uri == cls._namespace_CDAO('CDAO_0000101'):
|
1894
|
+
return True
|
1895
|
+
if uri == cls._namespace_CDAO('CDAO_0000102'):
|
1896
|
+
return True
|
1897
|
+
if uri == cls._namespace_CDAO('CDAO_0000103'):
|
1898
|
+
return True
|
1899
|
+
if uri == cls._namespace_CDAO('CDAO_0000104'):
|
1900
|
+
return True
|
1901
|
+
if uri == cls._namespace_CDAO('CDAO_0000105'):
|
1902
|
+
return True
|
1903
|
+
if uri == cls._namespace_CDAO('CDAO_0000107'):
|
1904
|
+
return True
|
1905
|
+
if uri == cls._namespace_CDAO('CDAO_0000108'):
|
1906
|
+
return True
|
1907
|
+
if uri == cls._namespace_CDAO('CDAO_0000109'):
|
1908
|
+
return True
|
1909
|
+
if uri == cls._namespace_CDAO('CDAO_0000110'):
|
1910
|
+
return True
|
1911
|
+
if uri == cls._namespace_CDAO('CDAO_0000111'):
|
1912
|
+
return True
|
1913
|
+
if uri == cls._namespace_CDAO('CDAO_0000112'):
|
1914
|
+
return True
|
1915
|
+
if uri == cls._namespace_CDAO('CDAO_0000113'):
|
1916
|
+
return True
|
1917
|
+
if uri == cls._namespace_CDAO('CDAO_0000114'):
|
1918
|
+
return True
|
1919
|
+
if uri == cls._namespace_CDAO('CDAO_0000115'):
|
1920
|
+
return True
|
1921
|
+
if uri == cls._namespace_CDAO('CDAO_0000116'):
|
1922
|
+
return True
|
1923
|
+
if uri == cls._namespace_CDAO('CDAO_0000117'):
|
1924
|
+
return True
|
1925
|
+
if uri == cls._namespace_CDAO('CDAO_0000118'):
|
1926
|
+
return True
|
1927
|
+
if uri == cls._namespace_CDAO('CDAO_0000120'):
|
1928
|
+
return True
|
1929
|
+
if uri == cls._namespace_CDAO('CDAO_0000121'):
|
1930
|
+
return True
|
1931
|
+
if uri == cls._namespace_CDAO('CDAO_0000122'):
|
1932
|
+
return True
|
1933
|
+
if uri == cls._namespace_CDAO('CDAO_0000124'):
|
1934
|
+
return True
|
1935
|
+
if uri == cls._namespace_CDAO('CDAO_0000125'):
|
1936
|
+
return True
|
1937
|
+
if uri == cls._namespace_CDAO('CDAO_0000126'):
|
1938
|
+
return True
|
1939
|
+
if uri == cls._namespace_CDAO('CDAO_0000127'):
|
1940
|
+
return True
|
1941
|
+
if uri == cls._namespace_CDAO('CDAO_0000128'):
|
1942
|
+
return True
|
1943
|
+
if uri == cls._namespace_CDAO('CDAO_0000129'):
|
1944
|
+
return True
|
1945
|
+
if uri == cls._namespace_CDAO('CDAO_0000130'):
|
1946
|
+
return True
|
1947
|
+
if uri == cls._namespace_CDAO('CDAO_0000131'):
|
1948
|
+
return True
|
1949
|
+
if uri == cls._namespace_CDAO('CDAO_0000132'):
|
1950
|
+
return True
|
1951
|
+
if uri == cls._namespace_CDAO('CDAO_0000133'):
|
1952
|
+
return True
|
1953
|
+
if uri == cls._namespace_CDAO('CDAO_0000134'):
|
1954
|
+
return True
|
1955
|
+
if uri == cls._namespace_CDAO('CDAO_0000136'):
|
1956
|
+
return True
|
1957
|
+
if uri == cls._namespace_CDAO('CDAO_0000137'):
|
1958
|
+
return True
|
1959
|
+
if uri == cls._namespace_CDAO('CDAO_0000138'):
|
1960
|
+
return True
|
1961
|
+
if uri == cls._namespace_CDAO('CDAO_0000139'):
|
1962
|
+
return True
|
1963
|
+
if uri == cls._namespace_CDAO('CDAO_0000140'):
|
1964
|
+
return True
|
1965
|
+
if uri == cls._namespace_CDAO('CDAO_0000141'):
|
1966
|
+
return True
|
1967
|
+
return False
|
1968
|
+
|
1969
|
+
@classmethod
|
1970
|
+
def is_named_individual(cls, uri):
|
1971
|
+
"""Determines whether the given URI is a named individual.
|
1972
|
+
|
1973
|
+
uri -- URI that is tested for being a named individual
|
1974
|
+
"""
|
1975
|
+
if uri == cls._namespace_CDAO('CDAO_0000220'):
|
1976
|
+
return True
|
1977
|
+
if uri == cls._namespace_CDAO('CDAO_0000221'):
|
1978
|
+
return True
|
1979
|
+
if uri == cls._namespace_CDAO('CDAO_0000222'):
|
1980
|
+
return True
|
1981
|
+
if uri == cls._namespace_CDAO('CDAO_0000223'):
|
1982
|
+
return True
|
1983
|
+
if uri == cls._namespace_CDAO('CDAO_0000224'):
|
1984
|
+
return True
|
1985
|
+
if uri == cls._namespace_CDAO('CDAO_0000225'):
|
1986
|
+
return True
|
1987
|
+
if uri == cls._namespace_CDAO('CDAO_0000226'):
|
1988
|
+
return True
|
1989
|
+
if uri == cls._namespace_CDAO('CDAO_0000227'):
|
1990
|
+
return True
|
1991
|
+
return False
|
1992
|
+
|
1993
|
+
@classmethod
|
1994
|
+
def with_parent(cls, uris, parent):
|
1995
|
+
"""Returns only those URIs that fall under a designated parent URI.
|
1996
|
+
|
1997
|
+
uris -- Set of URIs that are tested whether they have the given parent URI.
|
1998
|
+
parent -- Parent URI.
|
1999
|
+
"""
|
2000
|
+
return filter(lambda uri: cls.has_parent(uri, parent), uris)
|
2001
|
+
|
2002
|
+
@classmethod
|
2003
|
+
def has_parent(cls, uri, parent):
|
2004
|
+
"""Recursively tries to determine the parent for a given URI.
|
2005
|
+
|
2006
|
+
uri -- URI that is tested for whether it has the given parent URI.
|
2007
|
+
parent -- Parent URI.
|
2008
|
+
"""
|
2009
|
+
if cls.__parent_properties.has_key(uri):
|
2010
|
+
if cls.__parent_properties[uri] == parent:
|
2011
|
+
return True
|
2012
|
+
return cls.has_parent(cls.__parent_properties[uri], parent)
|
2013
|
+
return False
|
2014
|
+
|
2015
|
+
@classmethod
|
2016
|
+
def _namespace_CDAO(cls, accession):
|
2017
|
+
return Namespace('http://purl.obolibrary.org/obo/')[accession]
|
2018
|
+
|
2019
|
+
__parent_properties = { Namespace('http://purl.obolibrary.org/obo/CDAO_0000142') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000143') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000146') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000144') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000145') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000184') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000146') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000190') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000147') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000190') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000148') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000149') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000174') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000150') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000151') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000152') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000205') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000153') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000154') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000183') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000156') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000184') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000158') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000206') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000159') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000182') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000162') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000166') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000205') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000168') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000206') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000170') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000183') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000171') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000173') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000205') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000174') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000175') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000184') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000176') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000177') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000146') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000179') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000144') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000180') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000205') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000182') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000183') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000153') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000184') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000178') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000185') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000182') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000186') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000182') 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Namespace('http://purl.obolibrary.org/obo/CDAO_0000110') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000074') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000044') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000075') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000111') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000076') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000034') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000077') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000064') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000079') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000074') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000081') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000074') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000082') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000063') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000083') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000100') 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Namespace('http://purl.obolibrary.org/obo/CDAO_0000096') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000006') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000100') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000063') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000103') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000063') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000104') : Namespace('http://purl.obolibrary.org/obo/http://www.w3.org/2002/07/owl#Thing') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000105') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000107') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000107') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000025') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000108') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000140') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000110') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000006') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000111') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000071') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000112') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000050') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000113') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000107') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000114') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000009') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000115') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000111') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000121') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000064') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000122') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000064') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000125') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000100') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000126') 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Namespace('http://purl.obolibrary.org/obo/CDAO_0000089') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000137') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000007') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000138') : Namespace('http://purl.obolibrary.org/obo/http://www.w3.org/2002/07/owl#Thing') , Namespace('http://purl.obolibrary.org/obo/CDAO_0000141') : Namespace('http://purl.obolibrary.org/obo/CDAO_0000009') }
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2020
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+
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2021
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+
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