biointerchange 0.2.2 → 1.0.0

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Files changed (55) hide show
  1. data/Gemfile +1 -0
  2. data/README.md +269 -19
  3. data/VERSION +1 -1
  4. data/examples/bininda_emonds_mammals.new +1 -0
  5. data/examples/rdfization.rb +17 -0
  6. data/examples/tree1.new +1 -0
  7. data/examples/tree2.new +1 -0
  8. data/examples/vocabulary.rb +26 -5
  9. data/generators/javaify.rb +12 -18
  10. data/generators/make_supplement_releases.rb +2 -0
  11. data/generators/pythonify.rb +21 -8
  12. data/generators/rdfxml.rb +15 -1
  13. data/lib/biointerchange/cdao.rb +2014 -0
  14. data/lib/biointerchange/core.rb +70 -77
  15. data/lib/biointerchange/genomics/gff3_rdf_ntriples.rb +16 -0
  16. data/lib/biointerchange/genomics/gff3_reader.rb +18 -4
  17. data/lib/biointerchange/genomics/gvf_reader.rb +14 -0
  18. data/lib/biointerchange/phylogenetics/cdao_rdf_ntriples.rb +108 -0
  19. data/lib/biointerchange/phylogenetics/newick_reader.rb +81 -0
  20. data/lib/biointerchange/phylogenetics/tree_set.rb +50 -0
  21. data/lib/biointerchange/registry.rb +50 -8
  22. data/lib/biointerchange/so.rb +150 -0
  23. data/lib/biointerchange/textmining/pdfx_xml_reader.rb +21 -2
  24. data/lib/biointerchange/textmining/pubannos_json_reader.rb +24 -1
  25. data/lib/biointerchange/textmining/text_mining_rdf_ntriples.rb +9 -0
  26. data/lib/biointerchange/textmining/text_mining_reader.rb +5 -5
  27. data/spec/phylogenetics_spec.rb +79 -0
  28. data/supplemental/java/biointerchange/pom.xml +1 -1
  29. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/CDAO.java +2602 -0
  30. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/FALDO.java +30 -28
  31. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GFF3O.java +136 -104
  32. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GVF1O.java +367 -278
  33. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SIO.java +4388 -3127
  34. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SO.java +5970 -4351
  35. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SOFA.java +733 -544
  36. data/supplemental/java/biointerchange/src/test/java/org/biointerchange/AppTest.java +3 -1
  37. data/supplemental/python/biointerchange/cdao.py +2021 -0
  38. data/supplemental/python/biointerchange/faldo.py +37 -38
  39. data/supplemental/python/biointerchange/gff3o.py +156 -157
  40. data/supplemental/python/biointerchange/goxref.py +172 -172
  41. data/supplemental/python/biointerchange/gvf1o.py +428 -429
  42. data/supplemental/python/biointerchange/sio.py +3133 -3134
  43. data/supplemental/python/biointerchange/so.py +6626 -6527
  44. data/supplemental/python/biointerchange/sofa.py +790 -791
  45. data/supplemental/python/example.py +23 -5
  46. data/supplemental/python/setup.py +2 -2
  47. data/web/about.html +1 -0
  48. data/web/api.html +223 -15
  49. data/web/biointerchange.js +27 -6
  50. data/web/cli.html +8 -3
  51. data/web/index.html +6 -2
  52. data/web/ontologies.html +3 -0
  53. data/web/service/rdfizer.fcgi +7 -15
  54. data/web/webservices.html +6 -2
  55. metadata +30 -3
@@ -9,955 +9,955 @@ class GVF1O:
9
9
  def seqid(cls):
10
10
  """Either:
11
11
  Establishes the landmark (cls, e.g. a chromosome) on which a feature is located.
12
- (GVF1_0004)
12
+ (http://www.biointerchange.org/gvf1o#GVF1_0004)
13
13
  Or:
14
14
  Link to the landmark that establishes the coordinate system for the breakpoint.
15
- (GVF1_0072)
15
+ (http://www.biointerchange.org/gvf1o#GVF1_0072)
16
16
  """
17
- return [ _namespace_GVF1O('GVF1_0004'), _namespace_GVF1O('GVF1_0072') ]
17
+ return [ cls._namespace_GVF1O('GVF1_0004'), cls._namespace_GVF1O('GVF1_0072') ]
18
18
 
19
19
  @classmethod
20
20
  def strand(cls):
21
21
  """Either:
22
22
  Strand of the feature.
23
- (cls, GVF1_0010)
23
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0010)
24
24
  Or:
25
25
  Strand of the breakpoint.
26
- (GVF1_0083)
26
+ (http://www.biointerchange.org/gvf1o#GVF1_0083)
27
27
  Or:
28
28
  Strand of a target -- if applicable.
29
- (GVF1_0091)
29
+ (http://www.biointerchange.org/gvf1o#GVF1_0091)
30
30
  """
31
- return [ _namespace_GVF1O('GVF1_0010'), _namespace_GVF1O('GVF1_0083'), _namespace_GVF1O('GVF1_0091') ]
31
+ return [ cls._namespace_GVF1O('GVF1_0010'), cls._namespace_GVF1O('GVF1_0083'), cls._namespace_GVF1O('GVF1_0091') ]
32
32
 
33
33
  @classmethod
34
34
  def attributes(cls):
35
35
  """Either:
36
36
  Tag name/value pair attributes of a feature.
37
- (cls, GVF1_0012)
37
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0012)
38
38
  Or:
39
39
  Tag name/value pair attributes that are not captured by the GVF specification.
40
- (GVF1_0152)
40
+ (http://www.biointerchange.org/gvf1o#GVF1_0152)
41
41
  """
42
- return [ _namespace_GVF1O('GVF1_0012'), _namespace_GVF1O('GVF1_0152') ]
42
+ return [ cls._namespace_GVF1O('GVF1_0012'), cls._namespace_GVF1O('GVF1_0152') ]
43
43
 
44
44
  @classmethod
45
45
  def parent(cls):
46
46
  """Link out to the parent feature.
47
- (cls, GVF1_0014)
47
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0014)
48
48
  """
49
- return _namespace_GVF1O('GVF1_0014')
49
+ return cls._namespace_GVF1O('GVF1_0014')
50
50
 
51
51
  @classmethod
52
52
  def contains(cls):
53
53
  """Relationship that describes which features belong to a feature set.
54
- (cls, GVF1_0015)
54
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0015)
55
55
  """
56
- return _namespace_GVF1O('GVF1_0015')
56
+ return cls._namespace_GVF1O('GVF1_0015')
57
57
 
58
58
  @classmethod
59
59
  def region(cls):
60
60
  """Either:
61
61
  FALDO "Region" instance replacement for a feature's start, stop, strand properties.
62
- (cls, GVF1_0021)
62
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0021)
63
63
  Or:
64
64
  FALDO "Region" instance replacement for a breakpoint's start, stop, strand properties.
65
- (GVF1_0079)
65
+ (http://www.biointerchange.org/gvf1o#GVF1_0079)
66
66
  Or:
67
67
  FALDO "Region" instance replacement for a target's start, stop, strand properties.
68
- (GVF1_0090)
68
+ (http://www.biointerchange.org/gvf1o#GVF1_0090)
69
69
  """
70
- return [ _namespace_GVF1O('GVF1_0021'), _namespace_GVF1O('GVF1_0079'), _namespace_GVF1O('GVF1_0090') ]
70
+ return [ cls._namespace_GVF1O('GVF1_0021'), cls._namespace_GVF1O('GVF1_0079'), cls._namespace_GVF1O('GVF1_0090') ]
71
71
 
72
72
  @classmethod
73
73
  def species(cls):
74
74
  """NCBI Taxonomy Ontology "NCBITaxon_1" (cls, or sub-classes) instance that denotes the species for a feature set.
75
- (GVF1_0023)
75
+ (http://www.biointerchange.org/gvf1o#GVF1_0023)
76
76
  """
77
- return _namespace_GVF1O('GVF1_0023')
77
+ return cls._namespace_GVF1O('GVF1_0023')
78
78
 
79
79
  @classmethod
80
80
  def variant(cls):
81
81
  """Specific information about the variant(cls, s) of a feature.
82
- (GVF1_0034)
82
+ (http://www.biointerchange.org/gvf1o#GVF1_0034)
83
83
  """
84
- return _namespace_GVF1O('GVF1_0034')
84
+ return cls._namespace_GVF1O('GVF1_0034')
85
85
 
86
86
  @classmethod
87
87
  def individual(cls):
88
88
  """Links to information about an individual.
89
- (cls, GVF1_0036)
89
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0036)
90
90
  """
91
- return _namespace_GVF1O('GVF1_0036')
91
+ return cls._namespace_GVF1O('GVF1_0036')
92
92
 
93
93
  @classmethod
94
94
  def zygosity(cls):
95
95
  """Zygosity of a variant.
96
- (cls, GVF1_0038)
96
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0038)
97
97
  """
98
- return _namespace_GVF1O('GVF1_0038')
98
+ return cls._namespace_GVF1O('GVF1_0038')
99
99
 
100
100
  @classmethod
101
101
  def effect(cls):
102
102
  """An effect of a particular feature variant.
103
- (cls, GVF1_0041)
103
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0041)
104
104
  """
105
- return _namespace_GVF1O('GVF1_0041')
105
+ return cls._namespace_GVF1O('GVF1_0041')
106
106
 
107
107
  @classmethod
108
108
  def sequence_variant(cls):
109
109
  """Effect of a sequence alteration on a sequence feature.
110
- (cls, GVF1_0042)
110
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0042)
111
111
  """
112
- return _namespace_GVF1O('GVF1_0042')
112
+ return cls._namespace_GVF1O('GVF1_0042')
113
113
 
114
114
  @classmethod
115
115
  def feature_type(cls):
116
116
  """A term that is describing the sequence feature that is being affected.
117
- (cls, GVF1_0043)
117
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0043)
118
118
  """
119
- return _namespace_GVF1O('GVF1_0043')
119
+ return cls._namespace_GVF1O('GVF1_0043')
120
120
 
121
121
  @classmethod
122
122
  def start_range(cls):
123
123
  """A coordinate range for ambiguous start coordinates.
124
- (cls, GVF1_0046)
124
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0046)
125
125
  """
126
- return _namespace_GVF1O('GVF1_0046')
126
+ return cls._namespace_GVF1O('GVF1_0046')
127
127
 
128
128
  @classmethod
129
129
  def end_range(cls):
130
130
  """A coordinate range for ambiguous start coordinates.
131
- (cls, GVF1_0047)
131
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0047)
132
132
  """
133
- return _namespace_GVF1O('GVF1_0047')
133
+ return cls._namespace_GVF1O('GVF1_0047')
134
134
 
135
135
  @classmethod
136
136
  def chromosome(cls):
137
137
  """Denotes abstract chromosome representations for capturing variants that appear on the same chromosome of a polyploid organism.
138
- (cls, GVF1_0051)
138
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0051)
139
139
  """
140
- return _namespace_GVF1O('GVF1_0051')
140
+ return cls._namespace_GVF1O('GVF1_0051')
141
141
 
142
142
  @classmethod
143
143
  def genotype(cls):
144
144
  """Determines the genotype as observed in an individual.
145
- (cls, GVF1_0053)
145
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0053)
146
146
  """
147
- return _namespace_GVF1O('GVF1_0053')
147
+ return cls._namespace_GVF1O('GVF1_0053')
148
148
 
149
149
  @classmethod
150
150
  def feature_properties(cls):
151
151
  """Either:
152
152
  Properties that are directly associated with Feature class instances.
153
- (cls, GVF1_0066)
153
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0066)
154
154
  Or:
155
155
  Properties that are directly associated with Feature class instances.
156
- (GVF1_0059)
156
+ (http://www.biointerchange.org/gvf1o#GVF1_0059)
157
157
  """
158
- return [ _namespace_GVF1O('GVF1_0066'), _namespace_GVF1O('GVF1_0059') ]
158
+ return [ cls._namespace_GVF1O('GVF1_0066'), cls._namespace_GVF1O('GVF1_0059') ]
159
159
 
160
160
  @classmethod
161
161
  def sequencedindividual_properties(cls):
162
162
  """Either:
163
163
  Properties that are directly associated with SequencedIndividual class instances.
164
- (cls, GVF1_0067)
164
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0067)
165
165
  Or:
166
166
  Properties that are directly associated with SequencedIndividual class instances.
167
- (GVF1_0065)
167
+ (http://www.biointerchange.org/gvf1o#GVF1_0065)
168
168
  """
169
- return [ _namespace_GVF1O('GVF1_0067'), _namespace_GVF1O('GVF1_0065') ]
169
+ return [ cls._namespace_GVF1O('GVF1_0067'), cls._namespace_GVF1O('GVF1_0065') ]
170
170
 
171
171
  @classmethod
172
172
  def set_properties(cls):
173
173
  """Either:
174
174
  Properties that are directly associated with Set class instances.
175
- (cls, GVF1_0068)
175
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0068)
176
176
  Or:
177
177
  Properties that are directly associated with Set class instances.
178
- (GVF1_0063)
178
+ (http://www.biointerchange.org/gvf1o#GVF1_0063)
179
179
  """
180
- return [ _namespace_GVF1O('GVF1_0068'), _namespace_GVF1O('GVF1_0063') ]
180
+ return [ cls._namespace_GVF1O('GVF1_0068'), cls._namespace_GVF1O('GVF1_0063') ]
181
181
 
182
182
  @classmethod
183
183
  def variant_properties(cls):
184
184
  """Either:
185
185
  Properties that are directly associated with Variant class instances.
186
- (cls, GVF1_0069)
186
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0069)
187
187
  Or:
188
188
  Properties that are directly associated with Variant class instances.
189
- (GVF1_0060)
189
+ (http://www.biointerchange.org/gvf1o#GVF1_0060)
190
190
  """
191
- return [ _namespace_GVF1O('GVF1_0069'), _namespace_GVF1O('GVF1_0060') ]
191
+ return [ cls._namespace_GVF1O('GVF1_0069'), cls._namespace_GVF1O('GVF1_0060') ]
192
192
 
193
193
  @classmethod
194
194
  def effect_properties(cls):
195
195
  """Either:
196
196
  Properties that are directly associated with Effect class instances.
197
- (cls, GVF1_0070)
197
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0070)
198
198
  Or:
199
199
  Properties that are directly associated with Effect class instances.
200
- (GVF1_0158)
200
+ (http://www.biointerchange.org/gvf1o#GVF1_0158)
201
201
  """
202
- return [ _namespace_GVF1O('GVF1_0070'), _namespace_GVF1O('GVF1_0158') ]
202
+ return [ cls._namespace_GVF1O('GVF1_0070'), cls._namespace_GVF1O('GVF1_0158') ]
203
203
 
204
204
  @classmethod
205
205
  def breakpoint_properties(cls):
206
206
  """Either:
207
207
  Properties that are directly associated with Breakpoint class instances.
208
- (cls, GVF1_0075)
208
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0075)
209
209
  Or:
210
210
  Properties that are directly associated with Breakpoint class instances.
211
- (GVF1_0071)
211
+ (http://www.biointerchange.org/gvf1o#GVF1_0071)
212
212
  """
213
- return [ _namespace_GVF1O('GVF1_0075'), _namespace_GVF1O('GVF1_0071') ]
213
+ return [ cls._namespace_GVF1O('GVF1_0075'), cls._namespace_GVF1O('GVF1_0071') ]
214
214
 
215
215
  @classmethod
216
216
  def dbxref(cls):
217
217
  """Either:
218
218
  A database cross-reference to associate a sequence alteration to its representation in another database.
219
- (cls, GVF1_0078)
219
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0078)
220
220
  Or:
221
221
  A database cross-reference to associate a structured pragma to a representation in another database.
222
- (GVF1_0104)
222
+ (http://www.biointerchange.org/gvf1o#GVF1_0104)
223
223
  """
224
- return [ _namespace_GVF1O('GVF1_0078'), _namespace_GVF1O('GVF1_0104') ]
224
+ return [ cls._namespace_GVF1O('GVF1_0078'), cls._namespace_GVF1O('GVF1_0104') ]
225
225
 
226
226
  @classmethod
227
227
  def breakpoint(cls):
228
228
  """Potential source or destination of zero-length sequence alterations.
229
- (cls, GVF1_0080)
229
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0080)
230
230
  """
231
- return _namespace_GVF1O('GVF1_0080')
231
+ return cls._namespace_GVF1O('GVF1_0080')
232
232
 
233
233
  @classmethod
234
234
  def target_properties(cls):
235
235
  """Either:
236
236
  Properties that are directly associated with Target class instances.
237
- (cls, GVF1_0089)
237
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0089)
238
238
  Or:
239
239
  Properties that are directly associated with Target class instances.
240
- (GVF1_0092)
240
+ (http://www.biointerchange.org/gvf1o#GVF1_0092)
241
241
  """
242
- return [ _namespace_GVF1O('GVF1_0089'), _namespace_GVF1O('GVF1_0092') ]
242
+ return [ cls._namespace_GVF1O('GVF1_0089'), cls._namespace_GVF1O('GVF1_0092') ]
243
243
 
244
244
  @classmethod
245
245
  def technologyplatform_properties(cls):
246
246
  """Either:
247
247
  Properties that are directly associated with TechnologyPlatform class instances.
248
- (cls, GVF1_0102)
248
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0102)
249
249
  Or:
250
250
  Properties that are directly associated with TechnologyPlatform class instances.
251
- (GVF1_0107)
251
+ (http://www.biointerchange.org/gvf1o#GVF1_0107)
252
252
  """
253
- return [ _namespace_GVF1O('GVF1_0102'), _namespace_GVF1O('GVF1_0107') ]
253
+ return [ cls._namespace_GVF1O('GVF1_0102'), cls._namespace_GVF1O('GVF1_0107') ]
254
254
 
255
255
  @classmethod
256
256
  def datasource_properties(cls):
257
257
  """Properties that are directly associated with DataSource class instances.
258
- (cls, GVF1_0103)
258
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0103)
259
259
  """
260
- return _namespace_GVF1O('GVF1_0103')
260
+ return cls._namespace_GVF1O('GVF1_0103')
261
261
 
262
262
  @classmethod
263
263
  def structuredpragma_properties(cls):
264
264
  """Either:
265
265
  Properties describing structured pragma properties.
266
- (cls, GVF1_0112)
266
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0112)
267
267
  Or:
268
268
  Properties describing structured pragma properties.
269
- (GVF1_0113)
269
+ (http://www.biointerchange.org/gvf1o#GVF1_0113)
270
270
  """
271
- return [ _namespace_GVF1O('GVF1_0112'), _namespace_GVF1O('GVF1_0113') ]
271
+ return [ cls._namespace_GVF1O('GVF1_0112'), cls._namespace_GVF1O('GVF1_0113') ]
272
272
 
273
273
  @classmethod
274
274
  def read_type(cls):
275
275
  """Types of reads produced by the platform.
276
- (cls, GVF1_0119)
276
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0119)
277
277
  """
278
- return _namespace_GVF1O('GVF1_0119')
278
+ return cls._namespace_GVF1O('GVF1_0119')
279
279
 
280
280
  @classmethod
281
281
  def data_type(cls):
282
282
  """Datatype of this data source.
283
- (cls, GVF1_0120)
283
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0120)
284
284
  """
285
- return _namespace_GVF1O('GVF1_0120')
285
+ return cls._namespace_GVF1O('GVF1_0120')
286
286
 
287
287
  @classmethod
288
288
  def technology_platform(cls):
289
289
  """Technology platform that was used to derive the feature.
290
- (cls, GVF1_0121)
290
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0121)
291
291
  """
292
- return _namespace_GVF1O('GVF1_0121')
292
+ return cls._namespace_GVF1O('GVF1_0121')
293
293
 
294
294
  @classmethod
295
295
  def data_source(cls):
296
296
  """Data source origin of the feature.
297
- (cls, GVF1_0122)
297
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0122)
298
298
  """
299
- return _namespace_GVF1O('GVF1_0122')
299
+ return cls._namespace_GVF1O('GVF1_0122')
300
300
 
301
301
  @classmethod
302
302
  def score_method(cls):
303
303
  """Used scoring method.
304
- (cls, GVF1_0123)
304
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0123)
305
305
  """
306
- return _namespace_GVF1O('GVF1_0123')
306
+ return cls._namespace_GVF1O('GVF1_0123')
307
307
 
308
308
  @classmethod
309
309
  def source_method(cls):
310
310
  """Further information about the algorithm/methodologies used.
311
- (cls, GVF1_0124)
311
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0124)
312
312
  """
313
- return _namespace_GVF1O('GVF1_0124')
313
+ return cls._namespace_GVF1O('GVF1_0124')
314
314
 
315
315
  @classmethod
316
316
  def phenotype_description(cls):
317
317
  """Further information about an individual's phenotype. Applies only to single individual sets.
318
- (cls, GVF1_0125)
318
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0125)
319
319
  """
320
- return _namespace_GVF1O('GVF1_0125')
320
+ return cls._namespace_GVF1O('GVF1_0125')
321
321
 
322
322
  @classmethod
323
323
  def attribute_method(cls):
324
324
  """Either:
325
325
  Further information about the associated attribute(cls, s).
326
- (GVF1_0126)
326
+ (http://www.biointerchange.org/gvf1o#GVF1_0126)
327
327
  Or:
328
328
  Further information about the associated attribute(s).
329
- (GVF1_0127)
329
+ (http://www.biointerchange.org/gvf1o#GVF1_0127)
330
330
  Or:
331
331
  Further information about the associated attribute(s).
332
- (GVF1_0129)
332
+ (http://www.biointerchange.org/gvf1o#GVF1_0129)
333
333
  Or:
334
334
  Further information about the associated attribute(s).
335
- (GVF1_0130)
335
+ (http://www.biointerchange.org/gvf1o#GVF1_0130)
336
336
  Or:
337
337
  Further information about the associated attribute(s).
338
- (GVF1_0131)
338
+ (http://www.biointerchange.org/gvf1o#GVF1_0131)
339
339
  """
340
- return [ _namespace_GVF1O('GVF1_0126'), _namespace_GVF1O('GVF1_0127'), _namespace_GVF1O('GVF1_0129'), _namespace_GVF1O('GVF1_0130'), _namespace_GVF1O('GVF1_0131') ]
340
+ return [ cls._namespace_GVF1O('GVF1_0126'), cls._namespace_GVF1O('GVF1_0127'), cls._namespace_GVF1O('GVF1_0129'), cls._namespace_GVF1O('GVF1_0130'), cls._namespace_GVF1O('GVF1_0131') ]
341
341
 
342
342
  @classmethod
343
343
  def attribute_properties(cls):
344
344
  """Either:
345
345
  Properties about Attribute instances.
346
- (cls, GVF1_0128)
346
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0128)
347
347
  Or:
348
348
  Properties that are directly associated with Attribute class instances.
349
- (GVF1_0064)
349
+ (http://www.biointerchange.org/gvf1o#GVF1_0064)
350
350
  """
351
- return [ _namespace_GVF1O('GVF1_0128'), _namespace_GVF1O('GVF1_0064') ]
351
+ return [ cls._namespace_GVF1O('GVF1_0128'), cls._namespace_GVF1O('GVF1_0064') ]
352
352
 
353
353
  @classmethod
354
354
  def sex(cls):
355
355
  """Denotes the sex of the sequenced individual for single-individual sets.
356
- (cls, GVF1_0147)
356
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0147)
357
357
  """
358
- return _namespace_GVF1O('GVF1_0147')
358
+ return cls._namespace_GVF1O('GVF1_0147')
359
359
 
360
360
  @classmethod
361
361
  def genomic_source(cls):
362
362
  """Denotes the source of genomic data (cls, on a cell-type level).
363
- (GVF1_0148)
363
+ (http://www.biointerchange.org/gvf1o#GVF1_0148)
364
364
  """
365
- return _namespace_GVF1O('GVF1_0148')
365
+ return cls._namespace_GVF1O('GVF1_0148')
366
366
 
367
367
  @classmethod
368
368
  def feature_ontology(cls):
369
369
  """Explicit link-out to one or more ontologies that have been used for describing features. This is a meta comment about the URIs that link out to SO/SOFA or other ontologies.
370
- (cls, GVF1_0150)
370
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0150)
371
371
  """
372
- return _namespace_GVF1O('GVF1_0150')
372
+ return cls._namespace_GVF1O('GVF1_0150')
373
373
 
374
374
  @classmethod
375
375
  def target(cls):
376
376
  """Identifies the target that the features aligns to.
377
- (cls, GVF1_0155)
377
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0155)
378
378
  """
379
- return _namespace_GVF1O('GVF1_0155')
379
+ return cls._namespace_GVF1O('GVF1_0155')
380
380
 
381
381
  @classmethod
382
382
  def source(cls):
383
383
  """A free text qualifier that describes the algorithm or operating procedure that generated this feature. For example, the name of the software that generated this feature or a database name.
384
- (cls, GVF1_0005)
384
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0005)
385
385
  """
386
- return _namespace_GVF1O('GVF1_0005')
386
+ return cls._namespace_GVF1O('GVF1_0005')
387
387
 
388
388
  @classmethod
389
389
  def type(cls):
390
390
  """Type of the feature, which is either an entry the "lite" version of the Sequence Ontology (cls, SOFA) or a child entry of sequence_feature (SO:0000110) of the full Sequence Ontology (SO).
391
- (GVF1_0006)
391
+ (http://www.biointerchange.org/gvf1o#GVF1_0006)
392
392
  """
393
- return _namespace_GVF1O('GVF1_0006')
393
+ return cls._namespace_GVF1O('GVF1_0006')
394
394
 
395
395
  @classmethod
396
396
  def start(cls):
397
397
  """Either:
398
398
  Start coordinate of the feature on the seqid landmark.
399
- (cls, GVF1_0007)
399
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0007)
400
400
  Or:
401
401
  A coordinate that defines the start of an ambiguous coordinate range.
402
- (GVF1_0048)
402
+ (http://www.biointerchange.org/gvf1o#GVF1_0048)
403
403
  Or:
404
404
  Start coordinate of the feature on the seqid landmark.
405
- (GVF1_0073)
405
+ (http://www.biointerchange.org/gvf1o#GVF1_0073)
406
406
  Or:
407
407
  Start coordinate of the target.
408
- (GVF1_0094)
408
+ (http://www.biointerchange.org/gvf1o#GVF1_0094)
409
409
  Or:
410
410
  Genomic start coordinate of the landmark.
411
- (GVF1_0138)
411
+ (http://www.biointerchange.org/gvf1o#GVF1_0138)
412
412
  """
413
- return [ _namespace_GVF1O('GVF1_0007'), _namespace_GVF1O('GVF1_0048'), _namespace_GVF1O('GVF1_0073'), _namespace_GVF1O('GVF1_0094'), _namespace_GVF1O('GVF1_0138') ]
413
+ return [ cls._namespace_GVF1O('GVF1_0007'), cls._namespace_GVF1O('GVF1_0048'), cls._namespace_GVF1O('GVF1_0073'), cls._namespace_GVF1O('GVF1_0094'), cls._namespace_GVF1O('GVF1_0138') ]
414
414
 
415
415
  @classmethod
416
416
  def end(cls):
417
417
  """Either:
418
418
  End coordinate of the feature on the seqid landmark.
419
- (cls, GVF1_0008)
419
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0008)
420
420
  Or:
421
421
  A coordinate that defines the end of an ambiguous coordinate range.
422
- (GVF1_0049)
422
+ (http://www.biointerchange.org/gvf1o#GVF1_0049)
423
423
  Or:
424
424
  End coordinate of the feature on the seqid landmark.
425
- (GVF1_0074)
425
+ (http://www.biointerchange.org/gvf1o#GVF1_0074)
426
426
  Or:
427
427
  End coordinate of the target.
428
- (GVF1_0095)
428
+ (http://www.biointerchange.org/gvf1o#GVF1_0095)
429
429
  Or:
430
430
  Genomic end coordinate of the landmark.
431
- (GVF1_0139)
431
+ (http://www.biointerchange.org/gvf1o#GVF1_0139)
432
432
  """
433
- return [ _namespace_GVF1O('GVF1_0008'), _namespace_GVF1O('GVF1_0049'), _namespace_GVF1O('GVF1_0074'), _namespace_GVF1O('GVF1_0095'), _namespace_GVF1O('GVF1_0139') ]
433
+ return [ cls._namespace_GVF1O('GVF1_0008'), cls._namespace_GVF1O('GVF1_0049'), cls._namespace_GVF1O('GVF1_0074'), cls._namespace_GVF1O('GVF1_0095'), cls._namespace_GVF1O('GVF1_0139') ]
434
434
 
435
435
  @classmethod
436
436
  def score(cls):
437
437
  """Score of the feature. For example, an E-value for sequence similarity features or a P-value for ab initio gene prediction features.
438
- (cls, GVF1_0009)
438
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0009)
439
439
  """
440
- return _namespace_GVF1O('GVF1_0009')
440
+ return cls._namespace_GVF1O('GVF1_0009')
441
441
 
442
442
  @classmethod
443
443
  def tag(cls):
444
444
  """Either:
445
445
  Tag name of a feature attribute.
446
- (cls, GVF1_0013)
446
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0013)
447
447
  Or:
448
448
  Tag name of an user defined structured attribute.
449
- (GVF1_0154)
449
+ (http://www.biointerchange.org/gvf1o#GVF1_0154)
450
450
  """
451
- return [ _namespace_GVF1O('GVF1_0013'), _namespace_GVF1O('GVF1_0154') ]
451
+ return [ cls._namespace_GVF1O('GVF1_0013'), cls._namespace_GVF1O('GVF1_0154') ]
452
452
 
453
453
  @classmethod
454
454
  def gvf_version(cls):
455
455
  """Version of the GVF specification that defines the feature set contents.
456
- (cls, GVF1_0022)
456
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0022)
457
457
  """
458
- return _namespace_GVF1O('GVF1_0022')
458
+ return cls._namespace_GVF1O('GVF1_0022')
459
459
 
460
460
  @classmethod
461
461
  def build(cls):
462
462
  """Name of a genome assembly build that denotes the provenance of features in a feature set. For example, 'NCBI 36' or 'FlyBase r4.1'.
463
- (cls, GVF1_0024)
463
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0024)
464
464
  """
465
- return _namespace_GVF1O('GVF1_0024')
465
+ return cls._namespace_GVF1O('GVF1_0024')
466
466
 
467
467
  @classmethod
468
468
  def variant_seq(cls):
469
469
  """All sequence variations at a locus -- including the reference sequence when appropriate (cls, for example, when the locus is heterozygous). If the feature is on the minus strand, then the sequence is the reverse-compliment of the reference genome for these coordinates.
470
- (GVF1_0025)
470
+ (http://www.biointerchange.org/gvf1o#GVF1_0025)
471
471
  """
472
- return _namespace_GVF1O('GVF1_0025')
472
+ return cls._namespace_GVF1O('GVF1_0025')
473
473
 
474
474
  @classmethod
475
475
  def id(cls):
476
476
  """Either:
477
477
  A unique identifier for the feature within the feature set.
478
- (cls, GVF1_0026)
478
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0026)
479
479
  Or:
480
480
  ID that uniquely establishes the Landmark's identity within a Set.
481
- (GVF1_0137)
481
+ (http://www.biointerchange.org/gvf1o#GVF1_0137)
482
482
  """
483
- return [ _namespace_GVF1O('GVF1_0026'), _namespace_GVF1O('GVF1_0137') ]
483
+ return [ cls._namespace_GVF1O('GVF1_0026'), cls._namespace_GVF1O('GVF1_0137') ]
484
484
 
485
485
  @classmethod
486
486
  def alias(cls):
487
487
  """Secondary name of a feature, which can be HGVS/ISCN nomenclature names, but not cross-references to databases (cls, e.g. dbSNP, OMIM) which should use the dbxref property.
488
- (GVF1_0027)
488
+ (http://www.biointerchange.org/gvf1o#GVF1_0027)
489
489
  """
490
- return _namespace_GVF1O('GVF1_0027')
490
+ return cls._namespace_GVF1O('GVF1_0027')
491
491
 
492
492
  @classmethod
493
493
  def reference_seq(cls):
494
494
  """Sequence from the reference genome.
495
- (cls, GVF1_0031)
495
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0031)
496
496
  """
497
- return _namespace_GVF1O('GVF1_0031')
497
+ return cls._namespace_GVF1O('GVF1_0031')
498
498
 
499
499
  @classmethod
500
500
  def variant_reads(cls):
501
501
  """Number of reads that are supporting this variant.
502
- (cls, GVF1_0032)
502
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0032)
503
503
  """
504
- return _namespace_GVF1O('GVF1_0032')
504
+ return cls._namespace_GVF1O('GVF1_0032')
505
505
 
506
506
  @classmethod
507
507
  def total_reads(cls):
508
508
  """Total number of reads.
509
- (cls, GVF1_0037)
509
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0037)
510
510
  """
511
- return _namespace_GVF1O('GVF1_0037')
511
+ return cls._namespace_GVF1O('GVF1_0037')
512
512
 
513
513
  @classmethod
514
514
  def variant_freq(cls):
515
515
  """Frequency of a variant in a population.
516
- (cls, GVF1_0039)
516
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0039)
517
517
  """
518
- return _namespace_GVF1O('GVF1_0039')
518
+ return cls._namespace_GVF1O('GVF1_0039')
519
519
 
520
520
  @classmethod
521
521
  def feature(cls):
522
522
  """Features that are affected by this sequence alteration effect. This can be an external feature identifier, such as an Ensembl gene/transcript identifier.
523
- (cls, GVF1_0044)
523
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0044)
524
524
  """
525
- return _namespace_GVF1O('GVF1_0044')
525
+ return cls._namespace_GVF1O('GVF1_0044')
526
526
 
527
527
  @classmethod
528
528
  def phased(cls):
529
529
  """Either:
530
530
  Unclear from GVF specification.
531
- (cls, GVF1_0050)
531
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0050)
532
532
  Or:
533
533
  Indicates whether this particular is phased. Used to encode ##phased-genotypes statements.
534
- (GVF1_0101)
534
+ (http://www.biointerchange.org/gvf1o#GVF1_0101)
535
535
  """
536
- return [ _namespace_GVF1O('GVF1_0050'), _namespace_GVF1O('GVF1_0101') ]
536
+ return [ cls._namespace_GVF1O('GVF1_0050'), cls._namespace_GVF1O('GVF1_0101') ]
537
537
 
538
538
  @classmethod
539
539
  def variant_codon(cls):
540
540
  """Describes the codon that overlaps this variant.
541
- (cls, GVF1_0054)
541
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0054)
542
542
  """
543
- return _namespace_GVF1O('GVF1_0054')
543
+ return cls._namespace_GVF1O('GVF1_0054')
544
544
 
545
545
  @classmethod
546
546
  def reference_codon(cls):
547
547
  """Describes the codon from the reference sequence whose coordinates overlap with this variant.
548
- (cls, GVF1_0055)
548
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0055)
549
549
  """
550
- return _namespace_GVF1O('GVF1_0055')
550
+ return cls._namespace_GVF1O('GVF1_0055')
551
551
 
552
552
  @classmethod
553
553
  def variant_aa(cls):
554
554
  """Amino acid that overlaps with the variant.
555
- (cls, GVF1_0056)
555
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0056)
556
556
  """
557
- return _namespace_GVF1O('GVF1_0056')
557
+ return cls._namespace_GVF1O('GVF1_0056')
558
558
 
559
559
  @classmethod
560
560
  def reference_aa(cls):
561
561
  """Amino acid in the reference genome that overlaps with a variant's genome coordinates.
562
- (cls, GVF1_0057)
562
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0057)
563
563
  """
564
- return _namespace_GVF1O('GVF1_0057')
564
+ return cls._namespace_GVF1O('GVF1_0057')
565
565
 
566
566
  @classmethod
567
567
  def range_properties(cls):
568
568
  """Properties that are directly associated with Range class instances.
569
- (cls, GVF1_0061)
569
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0061)
570
570
  """
571
- return _namespace_GVF1O('GVF1_0061')
571
+ return cls._namespace_GVF1O('GVF1_0061')
572
572
 
573
573
  @classmethod
574
574
  def a_context(cls):
575
575
  """Sequence context (cls, positive strand) of a feature on the 5' end.
576
- (GVF1_0076)
576
+ (http://www.biointerchange.org/gvf1o#GVF1_0076)
577
577
  """
578
- return _namespace_GVF1O('GVF1_0076')
578
+ return cls._namespace_GVF1O('GVF1_0076')
579
579
 
580
580
  @classmethod
581
581
  def gff_version(cls):
582
582
  """Version of the GFF specification that defines the feature set contents apart from GVF related definitions.
583
- (cls, GVF1_0081)
583
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0081)
584
584
  """
585
- return _namespace_GVF1O('GVF1_0081')
585
+ return cls._namespace_GVF1O('GVF1_0081')
586
586
 
587
587
  @classmethod
588
588
  def file_date(cls):
589
589
  """Creation date of the GVF file that this set stems from.
590
- (cls, GVF1_0082)
590
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0082)
591
591
  """
592
- return _namespace_GVF1O('GVF1_0082')
592
+ return cls._namespace_GVF1O('GVF1_0082')
593
593
 
594
594
  @classmethod
595
595
  def target_id(cls):
596
596
  """ID or accession of the target alignment.
597
- (cls, GVF1_0093)
597
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0093)
598
598
  """
599
- return _namespace_GVF1O('GVF1_0093')
599
+ return cls._namespace_GVF1O('GVF1_0093')
600
600
 
601
601
  @classmethod
602
602
  def ontology_term(cls):
603
603
  """A cross-reference to an ontology term that is associated with a feature.
604
- (cls, GVF1_0096)
604
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0096)
605
605
  """
606
- return _namespace_GVF1O('GVF1_0096')
606
+ return cls._namespace_GVF1O('GVF1_0096')
607
607
 
608
608
  @classmethod
609
609
  def comment(cls):
610
610
  """An arbitrary comment. Free text.
611
- (cls, GVF1_0105)
611
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0105)
612
612
  """
613
- return _namespace_GVF1O('GVF1_0105')
613
+ return cls._namespace_GVF1O('GVF1_0105')
614
614
 
615
615
  @classmethod
616
616
  def platform_class(cls):
617
617
  """Type of technology used to gather the variant data. Unrestricted range due to open specification.
618
- (cls, GVF1_0106)
618
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0106)
619
619
  """
620
- return _namespace_GVF1O('GVF1_0106')
620
+ return cls._namespace_GVF1O('GVF1_0106')
621
621
 
622
622
  @classmethod
623
623
  def platform_name(cls):
624
624
  """Sequencer or other machine used to collect the variant data. Unrestricted range due to open specification.
625
- (cls, GVF1_0108)
625
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0108)
626
626
  """
627
- return _namespace_GVF1O('GVF1_0108')
627
+ return cls._namespace_GVF1O('GVF1_0108')
628
628
 
629
629
  @classmethod
630
630
  def read_length(cls):
631
631
  """Undocumented in GVF specification.
632
- (cls, GVF1_0132)
632
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0132)
633
633
  """
634
- return _namespace_GVF1O('GVF1_0132')
634
+ return cls._namespace_GVF1O('GVF1_0132')
635
635
 
636
636
  @classmethod
637
637
  def read_pair_span(cls):
638
638
  """Undocumented in GVF specification.
639
- (cls, GVF1_0133)
639
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0133)
640
640
  """
641
- return _namespace_GVF1O('GVF1_0133')
641
+ return cls._namespace_GVF1O('GVF1_0133')
642
642
 
643
643
  @classmethod
644
644
  def average_coverage(cls):
645
645
  """Undocumented in GVF specification.
646
- (cls, GVF1_0134)
646
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0134)
647
647
  """
648
- return _namespace_GVF1O('GVF1_0134')
648
+ return cls._namespace_GVF1O('GVF1_0134')
649
649
 
650
650
  @classmethod
651
651
  def landmark_properties(cls):
652
652
  """Properties that are directly associated with Landmark class instances.
653
- (cls, GVF1_0136)
653
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0136)
654
654
  """
655
- return _namespace_GVF1O('GVF1_0136')
655
+ return cls._namespace_GVF1O('GVF1_0136')
656
656
 
657
657
  @classmethod
658
658
  def file_version(cls):
659
659
  """Version of the GVF file that this set stems from.
660
- (cls, GVF1_0149)
660
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0149)
661
661
  """
662
- return _namespace_GVF1O('GVF1_0149')
662
+ return cls._namespace_GVF1O('GVF1_0149')
663
663
 
664
664
  @classmethod
665
665
  def structuredattribute_properties(cls):
666
666
  """Properties that are directly associated with StructuredAttribute class instances.
667
- (cls, GVF1_0153)
667
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0153)
668
668
  """
669
- return _namespace_GVF1O('GVF1_0153')
669
+ return cls._namespace_GVF1O('GVF1_0153')
670
670
 
671
671
  @classmethod
672
672
  def sequence(cls):
673
673
  """Either:
674
674
  Sequence associated with this feature, if it has been specified using a FASTA string.
675
- (cls, GVF1_0156)
675
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0156)
676
676
  Or:
677
677
  Sequence associated with this feature, if it has been specified using a FASTA string.
678
- (GVF1_0157)
678
+ (http://www.biointerchange.org/gvf1o#GVF1_0157)
679
679
  """
680
- return [ _namespace_GVF1O('GVF1_0156'), _namespace_GVF1O('GVF1_0157') ]
680
+ return [ cls._namespace_GVF1O('GVF1_0156'), cls._namespace_GVF1O('GVF1_0157') ]
681
681
 
682
682
  @classmethod
683
683
  def Set(cls):
684
684
  """Set of genomic sequence features, whose identifiers are unique within the set.
685
- (cls, GVF1_0001)
685
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0001)
686
686
  """
687
- return _namespace_GVF1O('GVF1_0001')
687
+ return cls._namespace_GVF1O('GVF1_0001')
688
688
 
689
689
  @classmethod
690
690
  def Feature(cls):
691
691
  """A genomic sequence feature.
692
- (cls, GVF1_0002)
692
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0002)
693
693
  """
694
- return _namespace_GVF1O('GVF1_0002')
694
+ return cls._namespace_GVF1O('GVF1_0002')
695
695
 
696
696
  @classmethod
697
697
  def Attribute(cls):
698
698
  """Representation of attribute tag/value pairs that are not covered by specific classes such as Effect or Variant.
699
- (cls, GVF1_0003)
699
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0003)
700
700
  """
701
- return _namespace_GVF1O('GVF1_0003')
701
+ return cls._namespace_GVF1O('GVF1_0003')
702
702
 
703
703
  @classmethod
704
704
  def Strand(cls):
705
705
  """Class describing a genomic strand. Instances of the class (cls, individuals) are used to denote forward-/reverse-strands, etc.
706
- (GVF1_0016)
706
+ (http://www.biointerchange.org/gvf1o#GVF1_0016)
707
707
  """
708
- return _namespace_GVF1O('GVF1_0016')
708
+ return cls._namespace_GVF1O('GVF1_0016')
709
709
 
710
710
  @classmethod
711
711
  def Variant(cls):
712
712
  """Describing specific alterations of a feature.
713
- (cls, GVF1_0033)
713
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0033)
714
714
  """
715
- return _namespace_GVF1O('GVF1_0033')
715
+ return cls._namespace_GVF1O('GVF1_0033')
716
716
 
717
717
  @classmethod
718
718
  def SequencedIndividual(cls):
719
719
  """Aggregated sequencing information for a particular individual.
720
- (cls, GVF1_0035)
720
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0035)
721
721
  """
722
- return _namespace_GVF1O('GVF1_0035')
722
+ return cls._namespace_GVF1O('GVF1_0035')
723
723
 
724
724
  @classmethod
725
725
  def Effect(cls):
726
726
  """Describing the effect of a feature variant.
727
- (cls, GVF1_0040)
727
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0040)
728
728
  """
729
- return _namespace_GVF1O('GVF1_0040')
729
+ return cls._namespace_GVF1O('GVF1_0040')
730
730
 
731
731
  @classmethod
732
732
  def Range(cls):
733
733
  """Describe ambiguity in either start or end coordinates.
734
- (cls, GVF1_0045)
734
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0045)
735
735
  """
736
- return _namespace_GVF1O('GVF1_0045')
736
+ return cls._namespace_GVF1O('GVF1_0045')
737
737
 
738
738
  @classmethod
739
739
  def Chromosome(cls):
740
740
  """An abstract representation of a chromosome to represent ploidy.
741
- (cls, GVF1_0052)
741
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0052)
742
742
  """
743
- return _namespace_GVF1O('GVF1_0052')
743
+ return cls._namespace_GVF1O('GVF1_0052')
744
744
 
745
745
  @classmethod
746
746
  def Breakpoint(cls):
747
747
  """Describes the source or destination of a zero-length sequence alteration.
748
- (cls, GVF1_0058)
748
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0058)
749
749
  """
750
- return _namespace_GVF1O('GVF1_0058')
750
+ return cls._namespace_GVF1O('GVF1_0058')
751
751
 
752
752
  @classmethod
753
753
  def Zygosity(cls):
754
754
  """Denotes the zygosity of alleles.
755
- (cls, GVF1_0084)
755
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0084)
756
756
  """
757
- return _namespace_GVF1O('GVF1_0084')
757
+ return cls._namespace_GVF1O('GVF1_0084')
758
758
 
759
759
  @classmethod
760
760
  def Target(cls):
761
761
  """Indicates a feature's "target" of a nucleotide-to-nucleotide or protein-to-nucleotide alignment.
762
- (cls, GVF1_0088)
762
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0088)
763
763
  """
764
- return _namespace_GVF1O('GVF1_0088')
764
+ return cls._namespace_GVF1O('GVF1_0088')
765
765
 
766
766
  @classmethod
767
767
  def TechnologyPlatform(cls):
768
768
  """Details about the sequencing/microarray technology used to gather the data in a set.
769
- (cls, GVF1_0097)
769
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0097)
770
770
  """
771
- return _namespace_GVF1O('GVF1_0097')
771
+ return cls._namespace_GVF1O('GVF1_0097')
772
772
 
773
773
  @classmethod
774
774
  def DataSource(cls):
775
775
  """Provides information about the source of the data. For example, it can link out to actual sequences associated with the Feature individuals in a Set.
776
- (cls, GVF1_0098)
776
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0098)
777
777
  """
778
- return _namespace_GVF1O('GVF1_0098')
778
+ return cls._namespace_GVF1O('GVF1_0098')
779
779
 
780
780
  @classmethod
781
781
  def Method(cls):
782
782
  """Information about the used scoring algorithm or method.
783
- (cls, GVF1_0099)
783
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0099)
784
784
  """
785
- return _namespace_GVF1O('GVF1_0099')
785
+ return cls._namespace_GVF1O('GVF1_0099')
786
786
 
787
787
  @classmethod
788
788
  def PhenotypeDescription(cls):
789
789
  """Additional information about an individual's phenotype.
790
- (cls, GVF1_0100)
790
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0100)
791
791
  """
792
- return _namespace_GVF1O('GVF1_0100')
792
+ return cls._namespace_GVF1O('GVF1_0100')
793
793
 
794
794
  @classmethod
795
795
  def ReadType(cls):
796
796
  """Type of reads obtained for a given technology platform.
797
- (cls, GVF1_0109)
797
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0109)
798
798
  """
799
- return _namespace_GVF1O('GVF1_0109')
799
+ return cls._namespace_GVF1O('GVF1_0109')
800
800
 
801
801
  @classmethod
802
802
  def DataType(cls):
803
803
  """Determines the datatype of a variant sequence.
804
- (cls, GVF1_0114)
804
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0114)
805
805
  """
806
- return _namespace_GVF1O('GVF1_0114')
806
+ return cls._namespace_GVF1O('GVF1_0114')
807
807
 
808
808
  @classmethod
809
809
  def Landmark(cls):
810
810
  """A landmark that establishes the coordinate system for features.
811
- (cls, GVF1_0135)
811
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0135)
812
812
  """
813
- return _namespace_GVF1O('GVF1_0135')
813
+ return cls._namespace_GVF1O('GVF1_0135')
814
814
 
815
815
  @classmethod
816
816
  def Sex(cls):
817
817
  """For single individual sets, the Sex class' OWL-individuals can be used to specify the sex of the sequenced (cls, real-life) individuals.
818
- (GVF1_0140)
818
+ (http://www.biointerchange.org/gvf1o#GVF1_0140)
819
819
  """
820
- return _namespace_GVF1O('GVF1_0140')
820
+ return cls._namespace_GVF1O('GVF1_0140')
821
821
 
822
822
  @classmethod
823
823
  def GenomicSource(cls):
824
824
  """An enumerated class for determining the genomic source (cls, cell type) of sequenced data.
825
- (GVF1_0141)
825
+ (http://www.biointerchange.org/gvf1o#GVF1_0141)
826
826
  """
827
- return _namespace_GVF1O('GVF1_0141')
827
+ return cls._namespace_GVF1O('GVF1_0141')
828
828
 
829
829
  @classmethod
830
830
  def StructuredAttribute(cls):
831
831
  """Representation of attribute tag/value pairs that are specific to particular structured attributes, but which are not covered by the GVF specification.
832
- (cls, GVF1_0151)
832
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0151)
833
833
  """
834
- return _namespace_GVF1O('GVF1_0151')
834
+ return cls._namespace_GVF1O('GVF1_0151')
835
835
 
836
836
  @classmethod
837
837
  def Positive(cls):
838
838
  """Location on the positive (cls, forward) strand.
839
- (GVF1_0017)
839
+ (http://www.biointerchange.org/gvf1o#GVF1_0017)
840
840
  """
841
- return _namespace_GVF1O('GVF1_0017')
841
+ return cls._namespace_GVF1O('GVF1_0017')
842
842
 
843
843
  @classmethod
844
844
  def Negative(cls):
845
845
  """Location on the negative (cls, reverse) strand.
846
- (GVF1_0018)
846
+ (http://www.biointerchange.org/gvf1o#GVF1_0018)
847
847
  """
848
- return _namespace_GVF1O('GVF1_0018')
848
+ return cls._namespace_GVF1O('GVF1_0018')
849
849
 
850
850
  @classmethod
851
851
  def UnknownStrand(cls):
852
852
  """Strand was not determined, which leaves it open whether the location is on the positive (cls, forward) or negative (reverse) strand.
853
- (GVF1_0019)
853
+ (http://www.biointerchange.org/gvf1o#GVF1_0019)
854
854
  """
855
- return _namespace_GVF1O('GVF1_0019')
855
+ return cls._namespace_GVF1O('GVF1_0019')
856
856
 
857
857
  @classmethod
858
858
  def NotStranded(cls):
859
859
  """Strand is not applicable.
860
- (cls, GVF1_0020)
860
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0020)
861
861
  """
862
- return _namespace_GVF1O('GVF1_0020')
862
+ return cls._namespace_GVF1O('GVF1_0020')
863
863
 
864
864
  @classmethod
865
865
  def Heterozygous(cls):
866
866
  """Denotes heterozygous alleles.
867
- (cls, GVF1_0085)
867
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0085)
868
868
  """
869
- return _namespace_GVF1O('GVF1_0085')
869
+ return cls._namespace_GVF1O('GVF1_0085')
870
870
 
871
871
  @classmethod
872
872
  def Homozygous(cls):
873
873
  """Denotes homozygous alleles.
874
- (cls, GVF1_0086)
874
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0086)
875
875
  """
876
- return _namespace_GVF1O('GVF1_0086')
876
+ return cls._namespace_GVF1O('GVF1_0086')
877
877
 
878
878
  @classmethod
879
879
  def Hemizygous(cls):
880
880
  """Denotes hemizygous alleles.
881
- (cls, GVF1_0087)
881
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0087)
882
882
  """
883
- return _namespace_GVF1O('GVF1_0087')
883
+ return cls._namespace_GVF1O('GVF1_0087')
884
884
 
885
885
  @classmethod
886
886
  def Fragment(cls):
887
887
  """Denotes reads that are fragments.
888
- (cls, GVF1_0110)
888
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0110)
889
889
  """
890
- return _namespace_GVF1O('GVF1_0110')
890
+ return cls._namespace_GVF1O('GVF1_0110')
891
891
 
892
892
  @classmethod
893
893
  def Pair(cls):
894
894
  """Denotes reads that are pairs.
895
- (cls, GVF1_0111)
895
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0111)
896
896
  """
897
- return _namespace_GVF1O('GVF1_0111')
897
+ return cls._namespace_GVF1O('GVF1_0111')
898
898
 
899
899
  @classmethod
900
900
  def DNASequence(cls):
901
901
  """Denotes a DNA sequence.
902
- (cls, GVF1_0115)
902
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0115)
903
903
  """
904
- return _namespace_GVF1O('GVF1_0115')
904
+ return cls._namespace_GVF1O('GVF1_0115')
905
905
 
906
906
  @classmethod
907
907
  def RNASequence(cls):
908
908
  """Denotes an RNA sequence.
909
- (cls, GVF1_0116)
909
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0116)
910
910
  """
911
- return _namespace_GVF1O('GVF1_0116')
911
+ return cls._namespace_GVF1O('GVF1_0116')
912
912
 
913
913
  @classmethod
914
914
  def DNAMicroarray(cls):
915
915
  """Denotes a DNA microarray probe.
916
- (cls, GVF1_0117)
916
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0117)
917
917
  """
918
- return _namespace_GVF1O('GVF1_0117')
918
+ return cls._namespace_GVF1O('GVF1_0117')
919
919
 
920
920
  @classmethod
921
921
  def ArrayComparativeGenomicHybridization(cls):
922
922
  """Denotes an array-comparative genomic hybridization.
923
- (cls, GVF1_0118)
923
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0118)
924
924
  """
925
- return _namespace_GVF1O('GVF1_0118')
925
+ return cls._namespace_GVF1O('GVF1_0118')
926
926
 
927
927
  @classmethod
928
928
  def Female(cls):
929
929
  """Denotes that a Set contains features of a female.
930
- (cls, GVF1_0142)
930
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0142)
931
931
  """
932
- return _namespace_GVF1O('GVF1_0142')
932
+ return cls._namespace_GVF1O('GVF1_0142')
933
933
 
934
934
  @classmethod
935
935
  def Male(cls):
936
936
  """Denotes that a Set contains features of a male.
937
- (cls, GVF1_0143)
937
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0143)
938
938
  """
939
- return _namespace_GVF1O('GVF1_0143')
939
+ return cls._namespace_GVF1O('GVF1_0143')
940
940
 
941
941
  @classmethod
942
942
  def Prenatal(cls):
943
943
  """Denotes that a set contains features of prenatal cells.
944
- (cls, GVF1_0144)
944
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0144)
945
945
  """
946
- return _namespace_GVF1O('GVF1_0144')
946
+ return cls._namespace_GVF1O('GVF1_0144')
947
947
 
948
948
  @classmethod
949
949
  def Germline(cls):
950
950
  """Denotes that a set contains features of germline cells.
951
- (cls, GVF1_0145)
951
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0145)
952
952
  """
953
- return _namespace_GVF1O('GVF1_0145')
953
+ return cls._namespace_GVF1O('GVF1_0145')
954
954
 
955
955
  @classmethod
956
956
  def Somatic(cls):
957
957
  """Denotes that a set contains features of somatic cells.
958
- (cls, GVF1_0146)
958
+ (cls, http://www.biointerchange.org/gvf1o#GVF1_0146)
959
959
  """
960
- return _namespace_GVF1O('GVF1_0146')
960
+ return cls._namespace_GVF1O('GVF1_0146')
961
961
 
962
962
  @classmethod
963
963
  def is_object_property(cls, uri):
@@ -965,111 +965,111 @@ class GVF1O:
965
965
 
966
966
  uri -- URI that is tested for being an object property
967
967
  """
968
- if uri == _namespace_GVF1O('GVF1_0004'):
968
+ if uri == cls._namespace_GVF1O('GVF1_0004'):
969
969
  return True
970
- if uri == _namespace_GVF1O('GVF1_0010'):
970
+ if uri == cls._namespace_GVF1O('GVF1_0010'):
971
971
  return True
972
- if uri == _namespace_GVF1O('GVF1_0012'):
972
+ if uri == cls._namespace_GVF1O('GVF1_0012'):
973
973
  return True
974
- if uri == _namespace_GVF1O('GVF1_0014'):
974
+ if uri == cls._namespace_GVF1O('GVF1_0014'):
975
975
  return True
976
- if uri == _namespace_GVF1O('GVF1_0015'):
976
+ if uri == cls._namespace_GVF1O('GVF1_0015'):
977
977
  return True
978
- if uri == _namespace_GVF1O('GVF1_0021'):
978
+ if uri == cls._namespace_GVF1O('GVF1_0021'):
979
979
  return True
980
- if uri == _namespace_GVF1O('GVF1_0023'):
980
+ if uri == cls._namespace_GVF1O('GVF1_0023'):
981
981
  return True
982
- if uri == _namespace_GVF1O('GVF1_0034'):
982
+ if uri == cls._namespace_GVF1O('GVF1_0034'):
983
983
  return True
984
- if uri == _namespace_GVF1O('GVF1_0036'):
984
+ if uri == cls._namespace_GVF1O('GVF1_0036'):
985
985
  return True
986
- if uri == _namespace_GVF1O('GVF1_0038'):
986
+ if uri == cls._namespace_GVF1O('GVF1_0038'):
987
987
  return True
988
- if uri == _namespace_GVF1O('GVF1_0041'):
988
+ if uri == cls._namespace_GVF1O('GVF1_0041'):
989
989
  return True
990
- if uri == _namespace_GVF1O('GVF1_0042'):
990
+ if uri == cls._namespace_GVF1O('GVF1_0042'):
991
991
  return True
992
- if uri == _namespace_GVF1O('GVF1_0043'):
992
+ if uri == cls._namespace_GVF1O('GVF1_0043'):
993
993
  return True
994
- if uri == _namespace_GVF1O('GVF1_0046'):
994
+ if uri == cls._namespace_GVF1O('GVF1_0046'):
995
995
  return True
996
- if uri == _namespace_GVF1O('GVF1_0047'):
996
+ if uri == cls._namespace_GVF1O('GVF1_0047'):
997
997
  return True
998
- if uri == _namespace_GVF1O('GVF1_0051'):
998
+ if uri == cls._namespace_GVF1O('GVF1_0051'):
999
999
  return True
1000
- if uri == _namespace_GVF1O('GVF1_0053'):
1000
+ if uri == cls._namespace_GVF1O('GVF1_0053'):
1001
1001
  return True
1002
- if uri == _namespace_GVF1O('GVF1_0066'):
1002
+ if uri == cls._namespace_GVF1O('GVF1_0066'):
1003
1003
  return True
1004
- if uri == _namespace_GVF1O('GVF1_0067'):
1004
+ if uri == cls._namespace_GVF1O('GVF1_0067'):
1005
1005
  return True
1006
- if uri == _namespace_GVF1O('GVF1_0068'):
1006
+ if uri == cls._namespace_GVF1O('GVF1_0068'):
1007
1007
  return True
1008
- if uri == _namespace_GVF1O('GVF1_0069'):
1008
+ if uri == cls._namespace_GVF1O('GVF1_0069'):
1009
1009
  return True
1010
- if uri == _namespace_GVF1O('GVF1_0070'):
1010
+ if uri == cls._namespace_GVF1O('GVF1_0070'):
1011
1011
  return True
1012
- if uri == _namespace_GVF1O('GVF1_0072'):
1012
+ if uri == cls._namespace_GVF1O('GVF1_0072'):
1013
1013
  return True
1014
- if uri == _namespace_GVF1O('GVF1_0075'):
1014
+ if uri == cls._namespace_GVF1O('GVF1_0075'):
1015
1015
  return True
1016
- if uri == _namespace_GVF1O('GVF1_0078'):
1016
+ if uri == cls._namespace_GVF1O('GVF1_0078'):
1017
1017
  return True
1018
- if uri == _namespace_GVF1O('GVF1_0079'):
1018
+ if uri == cls._namespace_GVF1O('GVF1_0079'):
1019
1019
  return True
1020
- if uri == _namespace_GVF1O('GVF1_0080'):
1020
+ if uri == cls._namespace_GVF1O('GVF1_0080'):
1021
1021
  return True
1022
- if uri == _namespace_GVF1O('GVF1_0083'):
1022
+ if uri == cls._namespace_GVF1O('GVF1_0083'):
1023
1023
  return True
1024
- if uri == _namespace_GVF1O('GVF1_0089'):
1024
+ if uri == cls._namespace_GVF1O('GVF1_0089'):
1025
1025
  return True
1026
- if uri == _namespace_GVF1O('GVF1_0090'):
1026
+ if uri == cls._namespace_GVF1O('GVF1_0090'):
1027
1027
  return True
1028
- if uri == _namespace_GVF1O('GVF1_0091'):
1028
+ if uri == cls._namespace_GVF1O('GVF1_0091'):
1029
1029
  return True
1030
- if uri == _namespace_GVF1O('GVF1_0102'):
1030
+ if uri == cls._namespace_GVF1O('GVF1_0102'):
1031
1031
  return True
1032
- if uri == _namespace_GVF1O('GVF1_0103'):
1032
+ if uri == cls._namespace_GVF1O('GVF1_0103'):
1033
1033
  return True
1034
- if uri == _namespace_GVF1O('GVF1_0104'):
1034
+ if uri == cls._namespace_GVF1O('GVF1_0104'):
1035
1035
  return True
1036
- if uri == _namespace_GVF1O('GVF1_0112'):
1036
+ if uri == cls._namespace_GVF1O('GVF1_0112'):
1037
1037
  return True
1038
- if uri == _namespace_GVF1O('GVF1_0119'):
1038
+ if uri == cls._namespace_GVF1O('GVF1_0119'):
1039
1039
  return True
1040
- if uri == _namespace_GVF1O('GVF1_0120'):
1040
+ if uri == cls._namespace_GVF1O('GVF1_0120'):
1041
1041
  return True
1042
- if uri == _namespace_GVF1O('GVF1_0121'):
1042
+ if uri == cls._namespace_GVF1O('GVF1_0121'):
1043
1043
  return True
1044
- if uri == _namespace_GVF1O('GVF1_0122'):
1044
+ if uri == cls._namespace_GVF1O('GVF1_0122'):
1045
1045
  return True
1046
- if uri == _namespace_GVF1O('GVF1_0123'):
1046
+ if uri == cls._namespace_GVF1O('GVF1_0123'):
1047
1047
  return True
1048
- if uri == _namespace_GVF1O('GVF1_0124'):
1048
+ if uri == cls._namespace_GVF1O('GVF1_0124'):
1049
1049
  return True
1050
- if uri == _namespace_GVF1O('GVF1_0125'):
1050
+ if uri == cls._namespace_GVF1O('GVF1_0125'):
1051
1051
  return True
1052
- if uri == _namespace_GVF1O('GVF1_0126'):
1052
+ if uri == cls._namespace_GVF1O('GVF1_0126'):
1053
1053
  return True
1054
- if uri == _namespace_GVF1O('GVF1_0127'):
1054
+ if uri == cls._namespace_GVF1O('GVF1_0127'):
1055
1055
  return True
1056
- if uri == _namespace_GVF1O('GVF1_0128'):
1056
+ if uri == cls._namespace_GVF1O('GVF1_0128'):
1057
1057
  return True
1058
- if uri == _namespace_GVF1O('GVF1_0129'):
1058
+ if uri == cls._namespace_GVF1O('GVF1_0129'):
1059
1059
  return True
1060
- if uri == _namespace_GVF1O('GVF1_0130'):
1060
+ if uri == cls._namespace_GVF1O('GVF1_0130'):
1061
1061
  return True
1062
- if uri == _namespace_GVF1O('GVF1_0131'):
1062
+ if uri == cls._namespace_GVF1O('GVF1_0131'):
1063
1063
  return True
1064
- if uri == _namespace_GVF1O('GVF1_0147'):
1064
+ if uri == cls._namespace_GVF1O('GVF1_0147'):
1065
1065
  return True
1066
- if uri == _namespace_GVF1O('GVF1_0148'):
1066
+ if uri == cls._namespace_GVF1O('GVF1_0148'):
1067
1067
  return True
1068
- if uri == _namespace_GVF1O('GVF1_0150'):
1068
+ if uri == cls._namespace_GVF1O('GVF1_0150'):
1069
1069
  return True
1070
- if uri == _namespace_GVF1O('GVF1_0152'):
1070
+ if uri == cls._namespace_GVF1O('GVF1_0152'):
1071
1071
  return True
1072
- if uri == _namespace_GVF1O('GVF1_0155'):
1072
+ if uri == cls._namespace_GVF1O('GVF1_0155'):
1073
1073
  return True
1074
1074
  return False
1075
1075
 
@@ -1079,125 +1079,125 @@ class GVF1O:
1079
1079
 
1080
1080
  uri -- URI that is tested for being a datatype property
1081
1081
  """
1082
- if uri == _namespace_GVF1O('GVF1_0005'):
1082
+ if uri == cls._namespace_GVF1O('GVF1_0005'):
1083
1083
  return True
1084
- if uri == _namespace_GVF1O('GVF1_0006'):
1084
+ if uri == cls._namespace_GVF1O('GVF1_0006'):
1085
1085
  return True
1086
- if uri == _namespace_GVF1O('GVF1_0007'):
1086
+ if uri == cls._namespace_GVF1O('GVF1_0007'):
1087
1087
  return True
1088
- if uri == _namespace_GVF1O('GVF1_0008'):
1088
+ if uri == cls._namespace_GVF1O('GVF1_0008'):
1089
1089
  return True
1090
- if uri == _namespace_GVF1O('GVF1_0009'):
1090
+ if uri == cls._namespace_GVF1O('GVF1_0009'):
1091
1091
  return True
1092
- if uri == _namespace_GVF1O('GVF1_0013'):
1092
+ if uri == cls._namespace_GVF1O('GVF1_0013'):
1093
1093
  return True
1094
- if uri == _namespace_GVF1O('GVF1_0022'):
1094
+ if uri == cls._namespace_GVF1O('GVF1_0022'):
1095
1095
  return True
1096
- if uri == _namespace_GVF1O('GVF1_0024'):
1096
+ if uri == cls._namespace_GVF1O('GVF1_0024'):
1097
1097
  return True
1098
- if uri == _namespace_GVF1O('GVF1_0025'):
1098
+ if uri == cls._namespace_GVF1O('GVF1_0025'):
1099
1099
  return True
1100
- if uri == _namespace_GVF1O('GVF1_0026'):
1100
+ if uri == cls._namespace_GVF1O('GVF1_0026'):
1101
1101
  return True
1102
- if uri == _namespace_GVF1O('GVF1_0027'):
1102
+ if uri == cls._namespace_GVF1O('GVF1_0027'):
1103
1103
  return True
1104
- if uri == _namespace_GVF1O('GVF1_0031'):
1104
+ if uri == cls._namespace_GVF1O('GVF1_0031'):
1105
1105
  return True
1106
- if uri == _namespace_GVF1O('GVF1_0032'):
1106
+ if uri == cls._namespace_GVF1O('GVF1_0032'):
1107
1107
  return True
1108
- if uri == _namespace_GVF1O('GVF1_0037'):
1108
+ if uri == cls._namespace_GVF1O('GVF1_0037'):
1109
1109
  return True
1110
- if uri == _namespace_GVF1O('GVF1_0039'):
1110
+ if uri == cls._namespace_GVF1O('GVF1_0039'):
1111
1111
  return True
1112
- if uri == _namespace_GVF1O('GVF1_0044'):
1112
+ if uri == cls._namespace_GVF1O('GVF1_0044'):
1113
1113
  return True
1114
- if uri == _namespace_GVF1O('GVF1_0048'):
1114
+ if uri == cls._namespace_GVF1O('GVF1_0048'):
1115
1115
  return True
1116
- if uri == _namespace_GVF1O('GVF1_0049'):
1116
+ if uri == cls._namespace_GVF1O('GVF1_0049'):
1117
1117
  return True
1118
- if uri == _namespace_GVF1O('GVF1_0050'):
1118
+ if uri == cls._namespace_GVF1O('GVF1_0050'):
1119
1119
  return True
1120
- if uri == _namespace_GVF1O('GVF1_0054'):
1120
+ if uri == cls._namespace_GVF1O('GVF1_0054'):
1121
1121
  return True
1122
- if uri == _namespace_GVF1O('GVF1_0055'):
1122
+ if uri == cls._namespace_GVF1O('GVF1_0055'):
1123
1123
  return True
1124
- if uri == _namespace_GVF1O('GVF1_0056'):
1124
+ if uri == cls._namespace_GVF1O('GVF1_0056'):
1125
1125
  return True
1126
- if uri == _namespace_GVF1O('GVF1_0057'):
1126
+ if uri == cls._namespace_GVF1O('GVF1_0057'):
1127
1127
  return True
1128
- if uri == _namespace_GVF1O('GVF1_0059'):
1128
+ if uri == cls._namespace_GVF1O('GVF1_0059'):
1129
1129
  return True
1130
- if uri == _namespace_GVF1O('GVF1_0060'):
1130
+ if uri == cls._namespace_GVF1O('GVF1_0060'):
1131
1131
  return True
1132
- if uri == _namespace_GVF1O('GVF1_0061'):
1132
+ if uri == cls._namespace_GVF1O('GVF1_0061'):
1133
1133
  return True
1134
- if uri == _namespace_GVF1O('GVF1_0063'):
1134
+ if uri == cls._namespace_GVF1O('GVF1_0063'):
1135
1135
  return True
1136
- if uri == _namespace_GVF1O('GVF1_0064'):
1136
+ if uri == cls._namespace_GVF1O('GVF1_0064'):
1137
1137
  return True
1138
- if uri == _namespace_GVF1O('GVF1_0065'):
1138
+ if uri == cls._namespace_GVF1O('GVF1_0065'):
1139
1139
  return True
1140
- if uri == _namespace_GVF1O('GVF1_0071'):
1140
+ if uri == cls._namespace_GVF1O('GVF1_0071'):
1141
1141
  return True
1142
- if uri == _namespace_GVF1O('GVF1_0073'):
1142
+ if uri == cls._namespace_GVF1O('GVF1_0073'):
1143
1143
  return True
1144
- if uri == _namespace_GVF1O('GVF1_0074'):
1144
+ if uri == cls._namespace_GVF1O('GVF1_0074'):
1145
1145
  return True
1146
- if uri == _namespace_GVF1O('GVF1_0076'):
1146
+ if uri == cls._namespace_GVF1O('GVF1_0076'):
1147
1147
  return True
1148
- if uri == _namespace_GVF1O('GVF1_0077'):
1148
+ if uri == cls._namespace_GVF1O('GVF1_0077'):
1149
1149
  return True
1150
- if uri == _namespace_GVF1O('GVF1_0081'):
1150
+ if uri == cls._namespace_GVF1O('GVF1_0081'):
1151
1151
  return True
1152
- if uri == _namespace_GVF1O('GVF1_0082'):
1152
+ if uri == cls._namespace_GVF1O('GVF1_0082'):
1153
1153
  return True
1154
- if uri == _namespace_GVF1O('GVF1_0092'):
1154
+ if uri == cls._namespace_GVF1O('GVF1_0092'):
1155
1155
  return True
1156
- if uri == _namespace_GVF1O('GVF1_0093'):
1156
+ if uri == cls._namespace_GVF1O('GVF1_0093'):
1157
1157
  return True
1158
- if uri == _namespace_GVF1O('GVF1_0094'):
1158
+ if uri == cls._namespace_GVF1O('GVF1_0094'):
1159
1159
  return True
1160
- if uri == _namespace_GVF1O('GVF1_0095'):
1160
+ if uri == cls._namespace_GVF1O('GVF1_0095'):
1161
1161
  return True
1162
- if uri == _namespace_GVF1O('GVF1_0096'):
1162
+ if uri == cls._namespace_GVF1O('GVF1_0096'):
1163
1163
  return True
1164
- if uri == _namespace_GVF1O('GVF1_0101'):
1164
+ if uri == cls._namespace_GVF1O('GVF1_0101'):
1165
1165
  return True
1166
- if uri == _namespace_GVF1O('GVF1_0105'):
1166
+ if uri == cls._namespace_GVF1O('GVF1_0105'):
1167
1167
  return True
1168
- if uri == _namespace_GVF1O('GVF1_0106'):
1168
+ if uri == cls._namespace_GVF1O('GVF1_0106'):
1169
1169
  return True
1170
- if uri == _namespace_GVF1O('GVF1_0107'):
1170
+ if uri == cls._namespace_GVF1O('GVF1_0107'):
1171
1171
  return True
1172
- if uri == _namespace_GVF1O('GVF1_0108'):
1172
+ if uri == cls._namespace_GVF1O('GVF1_0108'):
1173
1173
  return True
1174
- if uri == _namespace_GVF1O('GVF1_0113'):
1174
+ if uri == cls._namespace_GVF1O('GVF1_0113'):
1175
1175
  return True
1176
- if uri == _namespace_GVF1O('GVF1_0132'):
1176
+ if uri == cls._namespace_GVF1O('GVF1_0132'):
1177
1177
  return True
1178
- if uri == _namespace_GVF1O('GVF1_0133'):
1178
+ if uri == cls._namespace_GVF1O('GVF1_0133'):
1179
1179
  return True
1180
- if uri == _namespace_GVF1O('GVF1_0134'):
1180
+ if uri == cls._namespace_GVF1O('GVF1_0134'):
1181
1181
  return True
1182
- if uri == _namespace_GVF1O('GVF1_0136'):
1182
+ if uri == cls._namespace_GVF1O('GVF1_0136'):
1183
1183
  return True
1184
- if uri == _namespace_GVF1O('GVF1_0137'):
1184
+ if uri == cls._namespace_GVF1O('GVF1_0137'):
1185
1185
  return True
1186
- if uri == _namespace_GVF1O('GVF1_0138'):
1186
+ if uri == cls._namespace_GVF1O('GVF1_0138'):
1187
1187
  return True
1188
- if uri == _namespace_GVF1O('GVF1_0139'):
1188
+ if uri == cls._namespace_GVF1O('GVF1_0139'):
1189
1189
  return True
1190
- if uri == _namespace_GVF1O('GVF1_0149'):
1190
+ if uri == cls._namespace_GVF1O('GVF1_0149'):
1191
1191
  return True
1192
- if uri == _namespace_GVF1O('GVF1_0153'):
1192
+ if uri == cls._namespace_GVF1O('GVF1_0153'):
1193
1193
  return True
1194
- if uri == _namespace_GVF1O('GVF1_0154'):
1194
+ if uri == cls._namespace_GVF1O('GVF1_0154'):
1195
1195
  return True
1196
- if uri == _namespace_GVF1O('GVF1_0156'):
1196
+ if uri == cls._namespace_GVF1O('GVF1_0156'):
1197
1197
  return True
1198
- if uri == _namespace_GVF1O('GVF1_0157'):
1198
+ if uri == cls._namespace_GVF1O('GVF1_0157'):
1199
1199
  return True
1200
- if uri == _namespace_GVF1O('GVF1_0158'):
1200
+ if uri == cls._namespace_GVF1O('GVF1_0158'):
1201
1201
  return True
1202
1202
  return False
1203
1203
 
@@ -1207,49 +1207,49 @@ class GVF1O:
1207
1207
 
1208
1208
  uri -- URI that is tested for being a class
1209
1209
  """
1210
- if uri == _namespace_GVF1O('GVF1_0001'):
1210
+ if uri == cls._namespace_GVF1O('GVF1_0001'):
1211
1211
  return True
1212
- if uri == _namespace_GVF1O('GVF1_0002'):
1212
+ if uri == cls._namespace_GVF1O('GVF1_0002'):
1213
1213
  return True
1214
- if uri == _namespace_GVF1O('GVF1_0003'):
1214
+ if uri == cls._namespace_GVF1O('GVF1_0003'):
1215
1215
  return True
1216
- if uri == _namespace_GVF1O('GVF1_0016'):
1216
+ if uri == cls._namespace_GVF1O('GVF1_0016'):
1217
1217
  return True
1218
- if uri == _namespace_GVF1O('GVF1_0033'):
1218
+ if uri == cls._namespace_GVF1O('GVF1_0033'):
1219
1219
  return True
1220
- if uri == _namespace_GVF1O('GVF1_0035'):
1220
+ if uri == cls._namespace_GVF1O('GVF1_0035'):
1221
1221
  return True
1222
- if uri == _namespace_GVF1O('GVF1_0040'):
1222
+ if uri == cls._namespace_GVF1O('GVF1_0040'):
1223
1223
  return True
1224
- if uri == _namespace_GVF1O('GVF1_0045'):
1224
+ if uri == cls._namespace_GVF1O('GVF1_0045'):
1225
1225
  return True
1226
- if uri == _namespace_GVF1O('GVF1_0052'):
1226
+ if uri == cls._namespace_GVF1O('GVF1_0052'):
1227
1227
  return True
1228
- if uri == _namespace_GVF1O('GVF1_0058'):
1228
+ if uri == cls._namespace_GVF1O('GVF1_0058'):
1229
1229
  return True
1230
- if uri == _namespace_GVF1O('GVF1_0084'):
1230
+ if uri == cls._namespace_GVF1O('GVF1_0084'):
1231
1231
  return True
1232
- if uri == _namespace_GVF1O('GVF1_0088'):
1232
+ if uri == cls._namespace_GVF1O('GVF1_0088'):
1233
1233
  return True
1234
- if uri == _namespace_GVF1O('GVF1_0097'):
1234
+ if uri == cls._namespace_GVF1O('GVF1_0097'):
1235
1235
  return True
1236
- if uri == _namespace_GVF1O('GVF1_0098'):
1236
+ if uri == cls._namespace_GVF1O('GVF1_0098'):
1237
1237
  return True
1238
- if uri == _namespace_GVF1O('GVF1_0099'):
1238
+ if uri == cls._namespace_GVF1O('GVF1_0099'):
1239
1239
  return True
1240
- if uri == _namespace_GVF1O('GVF1_0100'):
1240
+ if uri == cls._namespace_GVF1O('GVF1_0100'):
1241
1241
  return True
1242
- if uri == _namespace_GVF1O('GVF1_0109'):
1242
+ if uri == cls._namespace_GVF1O('GVF1_0109'):
1243
1243
  return True
1244
- if uri == _namespace_GVF1O('GVF1_0114'):
1244
+ if uri == cls._namespace_GVF1O('GVF1_0114'):
1245
1245
  return True
1246
- if uri == _namespace_GVF1O('GVF1_0135'):
1246
+ if uri == cls._namespace_GVF1O('GVF1_0135'):
1247
1247
  return True
1248
- if uri == _namespace_GVF1O('GVF1_0140'):
1248
+ if uri == cls._namespace_GVF1O('GVF1_0140'):
1249
1249
  return True
1250
- if uri == _namespace_GVF1O('GVF1_0141'):
1250
+ if uri == cls._namespace_GVF1O('GVF1_0141'):
1251
1251
  return True
1252
- if uri == _namespace_GVF1O('GVF1_0151'):
1252
+ if uri == cls._namespace_GVF1O('GVF1_0151'):
1253
1253
  return True
1254
1254
  return False
1255
1255
 
@@ -1259,41 +1259,41 @@ class GVF1O:
1259
1259
 
1260
1260
  uri -- URI that is tested for being a named individual
1261
1261
  """
1262
- if uri == _namespace_GVF1O('GVF1_0017'):
1262
+ if uri == cls._namespace_GVF1O('GVF1_0017'):
1263
1263
  return True
1264
- if uri == _namespace_GVF1O('GVF1_0018'):
1264
+ if uri == cls._namespace_GVF1O('GVF1_0018'):
1265
1265
  return True
1266
- if uri == _namespace_GVF1O('GVF1_0019'):
1266
+ if uri == cls._namespace_GVF1O('GVF1_0019'):
1267
1267
  return True
1268
- if uri == _namespace_GVF1O('GVF1_0020'):
1268
+ if uri == cls._namespace_GVF1O('GVF1_0020'):
1269
1269
  return True
1270
- if uri == _namespace_GVF1O('GVF1_0085'):
1270
+ if uri == cls._namespace_GVF1O('GVF1_0085'):
1271
1271
  return True
1272
- if uri == _namespace_GVF1O('GVF1_0086'):
1272
+ if uri == cls._namespace_GVF1O('GVF1_0086'):
1273
1273
  return True
1274
- if uri == _namespace_GVF1O('GVF1_0087'):
1274
+ if uri == cls._namespace_GVF1O('GVF1_0087'):
1275
1275
  return True
1276
- if uri == _namespace_GVF1O('GVF1_0110'):
1276
+ if uri == cls._namespace_GVF1O('GVF1_0110'):
1277
1277
  return True
1278
- if uri == _namespace_GVF1O('GVF1_0111'):
1278
+ if uri == cls._namespace_GVF1O('GVF1_0111'):
1279
1279
  return True
1280
- if uri == _namespace_GVF1O('GVF1_0115'):
1280
+ if uri == cls._namespace_GVF1O('GVF1_0115'):
1281
1281
  return True
1282
- if uri == _namespace_GVF1O('GVF1_0116'):
1282
+ if uri == cls._namespace_GVF1O('GVF1_0116'):
1283
1283
  return True
1284
- if uri == _namespace_GVF1O('GVF1_0117'):
1284
+ if uri == cls._namespace_GVF1O('GVF1_0117'):
1285
1285
  return True
1286
- if uri == _namespace_GVF1O('GVF1_0118'):
1286
+ if uri == cls._namespace_GVF1O('GVF1_0118'):
1287
1287
  return True
1288
- if uri == _namespace_GVF1O('GVF1_0142'):
1288
+ if uri == cls._namespace_GVF1O('GVF1_0142'):
1289
1289
  return True
1290
- if uri == _namespace_GVF1O('GVF1_0143'):
1290
+ if uri == cls._namespace_GVF1O('GVF1_0143'):
1291
1291
  return True
1292
- if uri == _namespace_GVF1O('GVF1_0144'):
1292
+ if uri == cls._namespace_GVF1O('GVF1_0144'):
1293
1293
  return True
1294
- if uri == _namespace_GVF1O('GVF1_0145'):
1294
+ if uri == cls._namespace_GVF1O('GVF1_0145'):
1295
1295
  return True
1296
- if uri == _namespace_GVF1O('GVF1_0146'):
1296
+ if uri == cls._namespace_GVF1O('GVF1_0146'):
1297
1297
  return True
1298
1298
  return False
1299
1299
 
@@ -1319,11 +1319,10 @@ class GVF1O:
1319
1319
  return cls.has_parent(cls.__parent_properties[uri], parent)
1320
1320
  return False
1321
1321
 
1322
- __namespace_GVF1O = Namespace('http://www.biointerchange.org/gvf1o#')
1323
-
1324
- def _namespace_GVF1O(accession):
1325
- return __namespace_GVF1O[accession]
1322
+ @classmethod
1323
+ def _namespace_GVF1O(cls, accession):
1324
+ return Namespace('http://www.biointerchange.org/gvf1o#')[accession]
1326
1325
 
1327
- __parent_properties = { _namespace_GVF1O('GVF1_0004') : _namespace_GVF1O('GVF1_0066') , _namespace_GVF1O('GVF1_0010') : _namespace_GVF1O('GVF1_0066') , _namespace_GVF1O('GVF1_0012') : _namespace_GVF1O('GVF1_0066') , _namespace_GVF1O('GVF1_0014') : _namespace_GVF1O('GVF1_0066') , _namespace_GVF1O('GVF1_0015') : _namespace_GVF1O('GVF1_0068') , _namespace_GVF1O('GVF1_0021') : _namespace_GVF1O('GVF1_0066') , _namespace_GVF1O('GVF1_0023') : _namespace_GVF1O('GVF1_0068') , _namespace_GVF1O('GVF1_0034') : _namespace_GVF1O('GVF1_0066') , _namespace_GVF1O('GVF1_0036') : _namespace_GVF1O('GVF1_0066') , _namespace_GVF1O('GVF1_0038') : _namespace_GVF1O('GVF1_0069') , _namespace_GVF1O('GVF1_0041') : _namespace_GVF1O('GVF1_0069') , _namespace_GVF1O('GVF1_0042') : _namespace_GVF1O('GVF1_0070') , _namespace_GVF1O('GVF1_0043') : _namespace_GVF1O('GVF1_0070') , _namespace_GVF1O('GVF1_0046') : _namespace_GVF1O('GVF1_0070') , _namespace_GVF1O('GVF1_0047') : _namespace_GVF1O('GVF1_0070') , _namespace_GVF1O('GVF1_0051') : _namespace_GVF1O('GVF1_0067') , _namespace_GVF1O('GVF1_0053') : _namespace_GVF1O('GVF1_0069') , _namespace_GVF1O('GVF1_0072') : _namespace_GVF1O('GVF1_0075') , _namespace_GVF1O('GVF1_0078') : _namespace_GVF1O('GVF1_0066') , _namespace_GVF1O('GVF1_0079') : _namespace_GVF1O('GVF1_0075') , _namespace_GVF1O('GVF1_0080') : _namespace_GVF1O('GVF1_0066') , _namespace_GVF1O('GVF1_0083') : _namespace_GVF1O('GVF1_0075') , _namespace_GVF1O('GVF1_0090') : _namespace_GVF1O('GVF1_0089') , _namespace_GVF1O('GVF1_0091') : _namespace_GVF1O('GVF1_0089') , _namespace_GVF1O('GVF1_0102') : _namespace_GVF1O('GVF1_0112') , _namespace_GVF1O('GVF1_0103') : _namespace_GVF1O('GVF1_0112') , _namespace_GVF1O('GVF1_0104') : _namespace_GVF1O('GVF1_0112') , _namespace_GVF1O('GVF1_0119') : _namespace_GVF1O('GVF1_0102') , _namespace_GVF1O('GVF1_0120') : _namespace_GVF1O('GVF1_0103') , _namespace_GVF1O('GVF1_0121') : _namespace_GVF1O('GVF1_0066') , _namespace_GVF1O('GVF1_0122') : _namespace_GVF1O('GVF1_0066') , _namespace_GVF1O('GVF1_0123') : _namespace_GVF1O('GVF1_0066') , _namespace_GVF1O('GVF1_0124') : _namespace_GVF1O('GVF1_0066') , _namespace_GVF1O('GVF1_0125') : _namespace_GVF1O('GVF1_0068') , _namespace_GVF1O('GVF1_0126') : _namespace_GVF1O('GVF1_0070') , _namespace_GVF1O('GVF1_0127') : _namespace_GVF1O('GVF1_0075') , _namespace_GVF1O('GVF1_0129') : _namespace_GVF1O('GVF1_0128') , _namespace_GVF1O('GVF1_0130') : _namespace_GVF1O('GVF1_0089') , _namespace_GVF1O('GVF1_0131') : _namespace_GVF1O('GVF1_0069') , _namespace_GVF1O('GVF1_0147') : _namespace_GVF1O('GVF1_0068') , _namespace_GVF1O('GVF1_0148') : _namespace_GVF1O('GVF1_0068') , _namespace_GVF1O('GVF1_0150') : _namespace_GVF1O('GVF1_0068') , _namespace_GVF1O('GVF1_0152') : _namespace_GVF1O('GVF1_0112') , _namespace_GVF1O('GVF1_0155') : _namespace_GVF1O('GVF1_0066') , _namespace_GVF1O('GVF1_0005') : _namespace_GVF1O('GVF1_0059') , _namespace_GVF1O('GVF1_0006') : _namespace_GVF1O('GVF1_0059') , _namespace_GVF1O('GVF1_0007') : _namespace_GVF1O('GVF1_0059') , _namespace_GVF1O('GVF1_0008') : _namespace_GVF1O('GVF1_0059') , _namespace_GVF1O('GVF1_0009') : _namespace_GVF1O('GVF1_0059') , _namespace_GVF1O('GVF1_0013') : _namespace_GVF1O('GVF1_0064') , _namespace_GVF1O('GVF1_0022') : _namespace_GVF1O('GVF1_0063') , _namespace_GVF1O('GVF1_0024') : _namespace_GVF1O('GVF1_0063') , _namespace_GVF1O('GVF1_0025') : _namespace_GVF1O('GVF1_0060') , _namespace_GVF1O('GVF1_0026') : _namespace_GVF1O('GVF1_0059') , _namespace_GVF1O('GVF1_0027') : _namespace_GVF1O('GVF1_0059') , _namespace_GVF1O('GVF1_0031') : _namespace_GVF1O('GVF1_0059') , _namespace_GVF1O('GVF1_0032') : _namespace_GVF1O('GVF1_0060') , _namespace_GVF1O('GVF1_0037') : _namespace_GVF1O('GVF1_0065') , _namespace_GVF1O('GVF1_0039') : _namespace_GVF1O('GVF1_0060') , _namespace_GVF1O('GVF1_0044') : _namespace_GVF1O('GVF1_0158') , _namespace_GVF1O('GVF1_0048') : _namespace_GVF1O('GVF1_0061') , _namespace_GVF1O('GVF1_0049') : _namespace_GVF1O('GVF1_0061') , _namespace_GVF1O('GVF1_0050') : _namespace_GVF1O('GVF1_0060') , _namespace_GVF1O('GVF1_0054') : _namespace_GVF1O('GVF1_0060') , _namespace_GVF1O('GVF1_0055') : _namespace_GVF1O('GVF1_0059') , _namespace_GVF1O('GVF1_0056') : _namespace_GVF1O('GVF1_0060') , _namespace_GVF1O('GVF1_0057') : _namespace_GVF1O('GVF1_0059') , _namespace_GVF1O('GVF1_0073') : _namespace_GVF1O('GVF1_0071') , _namespace_GVF1O('GVF1_0074') : _namespace_GVF1O('GVF1_0071') , _namespace_GVF1O('GVF1_0076') : _namespace_GVF1O('GVF1_0059') , _namespace_GVF1O('GVF1_0077') : _namespace_GVF1O('GVF1_0059') , _namespace_GVF1O('GVF1_0081') : _namespace_GVF1O('GVF1_0063') , _namespace_GVF1O('GVF1_0082') : _namespace_GVF1O('GVF1_0063') , _namespace_GVF1O('GVF1_0093') : _namespace_GVF1O('GVF1_0092') , _namespace_GVF1O('GVF1_0094') : _namespace_GVF1O('GVF1_0092') , _namespace_GVF1O('GVF1_0095') : _namespace_GVF1O('GVF1_0092') , _namespace_GVF1O('GVF1_0096') : _namespace_GVF1O('GVF1_0059') , _namespace_GVF1O('GVF1_0101') : _namespace_GVF1O('GVF1_0059') , _namespace_GVF1O('GVF1_0105') : _namespace_GVF1O('GVF1_0113') , _namespace_GVF1O('GVF1_0106') : _namespace_GVF1O('GVF1_0107') , _namespace_GVF1O('GVF1_0107') : _namespace_GVF1O('GVF1_0113') , _namespace_GVF1O('GVF1_0108') : _namespace_GVF1O('GVF1_0107') , _namespace_GVF1O('GVF1_0132') : _namespace_GVF1O('GVF1_0107') , _namespace_GVF1O('GVF1_0133') : _namespace_GVF1O('GVF1_0107') , _namespace_GVF1O('GVF1_0134') : _namespace_GVF1O('GVF1_0107') , _namespace_GVF1O('GVF1_0137') : _namespace_GVF1O('GVF1_0136') , _namespace_GVF1O('GVF1_0138') : _namespace_GVF1O('GVF1_0136') , _namespace_GVF1O('GVF1_0139') : _namespace_GVF1O('GVF1_0136') , _namespace_GVF1O('GVF1_0149') : _namespace_GVF1O('GVF1_0063') , _namespace_GVF1O('GVF1_0154') : _namespace_GVF1O('GVF1_0153') , _namespace_GVF1O('GVF1_0156') : _namespace_GVF1O('GVF1_0059') , _namespace_GVF1O('GVF1_0157') : _namespace_GVF1O('GVF1_0136') , _namespace_GVF1O('GVF1_0088') : _namespace_GVF1O('http://www.w3.org/2002/07/owl#Thing') , _namespace_GVF1O('GVF1_0151') : _namespace_GVF1O('http://www.w3.org/2002/07/owl#Thing') }
1326
+ __parent_properties = { Namespace('http://www.biointerchange.org/gvf1o#GVF1_0004') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0066') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0010') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0066') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0012') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0066') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0014') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0066') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0015') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0068') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0021') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0066') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0023') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0068') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0034') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0066') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0036') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0066') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0038') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0069') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0041') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0069') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0042') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0070') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0043') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0070') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0046') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0070') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0047') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0070') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0051') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0067') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0053') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0069') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0072') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0075') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0078') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0066') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0079') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0075') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0080') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0066') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0083') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0075') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0090') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0089') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0091') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0089') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0102') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0112') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0103') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0112') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0104') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0112') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0119') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0102') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0120') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0103') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0121') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0066') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0122') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0066') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0123') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0066') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0124') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0066') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0125') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0068') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0126') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0070') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0127') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0075') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0129') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0128') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0130') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0089') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0131') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0069') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0147') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0068') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0148') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0068') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0150') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0068') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0152') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0112') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0155') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0066') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0005') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0059') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0006') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0059') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0007') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0059') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0008') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0059') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0009') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0059') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0013') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0064') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0022') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0063') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0024') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0063') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0025') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0060') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0026') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0059') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0027') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0059') , Namespace('http://www.biointerchange.org/gvf1o#GVF1_0031') : Namespace('http://www.biointerchange.org/gvf1o#GVF1_0059') , 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