snappy 3.1.1__cp39-cp39-win_amd64.whl → 3.2__cp39-cp39-win_amd64.whl

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Files changed (476) hide show
  1. snappy/CyOpenGL.cp39-win_amd64.pyd +0 -0
  2. snappy/SnapPy.cp39-win_amd64.pyd +0 -0
  3. snappy/SnapPyHP.cp39-win_amd64.pyd +0 -0
  4. snappy/__init__.py +299 -402
  5. snappy/app.py +70 -20
  6. snappy/browser.py +18 -17
  7. snappy/canonical.py +249 -0
  8. snappy/{verify/cusp_shapes.py → cusps/__init__.py} +8 -18
  9. snappy/cusps/cusp_area_matrix.py +101 -0
  10. snappy/{verify/cusp_areas.py → cusps/cusp_areas_from_matrix.py} +23 -39
  11. snappy/cusps/maximal_cusp_area_matrix.py +136 -0
  12. snappy/cusps/test.py +21 -0
  13. snappy/cusps/trig_cusp_area_matrix.py +63 -0
  14. snappy/database.py +10 -9
  15. snappy/decorated_isosig.py +337 -114
  16. snappy/dev/extended_ptolemy/complexVolumesClosed.py +40 -7
  17. snappy/dev/extended_ptolemy/extended.py +3 -3
  18. snappy/dev/extended_ptolemy/phc_wrapper.py +10 -10
  19. snappy/dev/vericlosed/oneVertexTruncatedComplex.py +1 -1
  20. snappy/doc/_images/m004_paper_plane_on_systole.jpg +0 -0
  21. snappy/doc/_images/m125_paper_plane.jpg +0 -0
  22. snappy/doc/_images/o9_00000_systole_paper_plane.jpg +0 -0
  23. snappy/doc/_images/o9_00000_systole_paper_plane_closer.jpg +0 -0
  24. snappy/doc/_sources/additional_classes.rst.txt +40 -40
  25. snappy/doc/_sources/bugs.rst.txt +14 -14
  26. snappy/doc/_sources/censuses.rst.txt +51 -51
  27. snappy/doc/_sources/credits.rst.txt +75 -75
  28. snappy/doc/_sources/development.rst.txt +259 -239
  29. snappy/doc/_sources/index.rst.txt +182 -115
  30. snappy/doc/_sources/installing.rst.txt +247 -264
  31. snappy/doc/_sources/manifold.rst.txt +6 -6
  32. snappy/doc/_sources/manifoldhp.rst.txt +46 -46
  33. snappy/doc/_sources/news.rst.txt +355 -283
  34. snappy/doc/_sources/other.rst.txt +25 -25
  35. snappy/doc/_sources/platonic_census.rst.txt +20 -20
  36. snappy/doc/_sources/plink.rst.txt +102 -102
  37. snappy/doc/_sources/ptolemy.rst.txt +66 -66
  38. snappy/doc/_sources/ptolemy_classes.rst.txt +42 -42
  39. snappy/doc/_sources/ptolemy_examples1.rst.txt +298 -297
  40. snappy/doc/_sources/ptolemy_examples2.rst.txt +363 -363
  41. snappy/doc/_sources/ptolemy_examples3.rst.txt +301 -301
  42. snappy/doc/_sources/ptolemy_examples4.rst.txt +61 -61
  43. snappy/doc/_sources/ptolemy_prelim.rst.txt +105 -105
  44. snappy/doc/_sources/screenshots.rst.txt +21 -21
  45. snappy/doc/_sources/snap.rst.txt +87 -87
  46. snappy/doc/_sources/snappy.rst.txt +28 -28
  47. snappy/doc/_sources/spherogram.rst.txt +103 -103
  48. snappy/doc/_sources/todo.rst.txt +47 -47
  49. snappy/doc/_sources/triangulation.rst.txt +11 -11
  50. snappy/doc/_sources/tutorial.rst.txt +49 -49
  51. snappy/doc/_sources/verify.rst.txt +210 -150
  52. snappy/doc/_sources/verify_internals.rst.txt +79 -90
  53. snappy/doc/_static/basic.css +924 -902
  54. snappy/doc/_static/css/badge_only.css +1 -1
  55. snappy/doc/_static/css/theme.css +1 -1
  56. snappy/doc/_static/doctools.js +1 -1
  57. snappy/doc/_static/documentation_options.js +12 -13
  58. snappy/doc/_static/fonts/Lato/lato-bold.eot +0 -0
  59. snappy/doc/_static/fonts/Lato/lato-bold.ttf +0 -0
  60. snappy/doc/_static/fonts/Lato/lato-bold.woff +0 -0
  61. snappy/doc/_static/fonts/Lato/lato-bold.woff2 +0 -0
  62. snappy/doc/_static/fonts/Lato/lato-bolditalic.eot +0 -0
  63. snappy/doc/_static/fonts/Lato/lato-bolditalic.ttf +0 -0
  64. snappy/doc/_static/fonts/Lato/lato-bolditalic.woff +0 -0
  65. snappy/doc/_static/fonts/Lato/lato-bolditalic.woff2 +0 -0
  66. snappy/doc/_static/fonts/Lato/lato-italic.eot +0 -0
  67. snappy/doc/_static/fonts/Lato/lato-italic.ttf +0 -0
  68. snappy/doc/_static/fonts/Lato/lato-italic.woff +0 -0
  69. snappy/doc/_static/fonts/Lato/lato-italic.woff2 +0 -0
  70. snappy/doc/_static/fonts/Lato/lato-regular.eot +0 -0
  71. snappy/doc/_static/fonts/Lato/lato-regular.ttf +0 -0
  72. snappy/doc/_static/fonts/Lato/lato-regular.woff +0 -0
  73. snappy/doc/_static/fonts/Lato/lato-regular.woff2 +0 -0
  74. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.eot +0 -0
  75. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.ttf +0 -0
  76. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff +0 -0
  77. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff2 +0 -0
  78. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.eot +0 -0
  79. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.ttf +0 -0
  80. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff +0 -0
  81. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2 +0 -0
  82. snappy/doc/_static/js/versions.js +228 -0
  83. snappy/doc/_static/language_data.js +199 -199
  84. snappy/doc/_static/pygments.css +74 -73
  85. snappy/doc/_static/searchtools.js +125 -71
  86. snappy/doc/_static/snappy_furo.css +33 -33
  87. snappy/doc/_static/snappy_sphinx_rtd_theme.css +42 -42
  88. snappy/doc/_static/sphinx_highlight.js +13 -3
  89. snappy/doc/additional_classes.html +1499 -1330
  90. snappy/doc/bugs.html +131 -134
  91. snappy/doc/censuses.html +426 -445
  92. snappy/doc/credits.html +180 -183
  93. snappy/doc/development.html +383 -363
  94. snappy/doc/genindex.html +1330 -1409
  95. snappy/doc/index.html +261 -206
  96. snappy/doc/installing.html +345 -363
  97. snappy/doc/manifold.html +3451 -2839
  98. snappy/doc/manifoldhp.html +179 -182
  99. snappy/doc/news.html +387 -329
  100. snappy/doc/objects.inv +0 -0
  101. snappy/doc/other.html +160 -162
  102. snappy/doc/platonic_census.html +374 -377
  103. snappy/doc/plink.html +209 -212
  104. snappy/doc/ptolemy.html +253 -255
  105. snappy/doc/ptolemy_classes.html +1143 -1146
  106. snappy/doc/ptolemy_examples1.html +408 -410
  107. snappy/doc/ptolemy_examples2.html +470 -473
  108. snappy/doc/ptolemy_examples3.html +413 -416
  109. snappy/doc/ptolemy_examples4.html +194 -197
  110. snappy/doc/ptolemy_prelim.html +247 -250
  111. snappy/doc/py-modindex.html +164 -167
  112. snappy/doc/screenshots.html +140 -142
  113. snappy/doc/search.html +134 -137
  114. snappy/doc/searchindex.js +1 -1
  115. snappy/doc/snap.html +201 -204
  116. snappy/doc/snappy.html +180 -182
  117. snappy/doc/spherogram.html +1210 -1213
  118. snappy/doc/todo.html +165 -168
  119. snappy/doc/triangulation.html +1583 -1474
  120. snappy/doc/tutorial.html +158 -161
  121. snappy/doc/verify.html +329 -275
  122. snappy/doc/verify_internals.html +1234 -1691
  123. snappy/drilling/__init__.py +153 -235
  124. snappy/drilling/barycentric.py +103 -0
  125. snappy/drilling/constants.py +0 -2
  126. snappy/drilling/crush.py +56 -130
  127. snappy/drilling/cusps.py +12 -6
  128. snappy/drilling/debug.py +2 -1
  129. snappy/drilling/exceptions.py +7 -40
  130. snappy/drilling/moves.py +302 -243
  131. snappy/drilling/perturb.py +63 -37
  132. snappy/drilling/shorten.py +36 -0
  133. snappy/drilling/subdivide.py +0 -5
  134. snappy/drilling/test.py +23 -0
  135. snappy/drilling/test_cases.py +126 -0
  136. snappy/drilling/tracing.py +9 -37
  137. snappy/exceptions.py +18 -5
  138. snappy/exterior_to_link/barycentric_geometry.py +2 -4
  139. snappy/exterior_to_link/main.py +8 -7
  140. snappy/exterior_to_link/mcomplex_with_link.py +2 -2
  141. snappy/exterior_to_link/rational_linear_algebra.py +1 -1
  142. snappy/exterior_to_link/rational_linear_algebra_wrapped.py +1 -1
  143. snappy/exterior_to_link/test.py +21 -33
  144. snappy/geometric_structure/__init__.py +212 -0
  145. snappy/geometric_structure/cusp_neighborhood/__init__.py +3 -0
  146. snappy/geometric_structure/cusp_neighborhood/complex_cusp_cross_section.py +697 -0
  147. snappy/geometric_structure/cusp_neighborhood/cusp_cross_section_base.py +484 -0
  148. snappy/geometric_structure/cusp_neighborhood/exceptions.py +42 -0
  149. snappy/geometric_structure/cusp_neighborhood/real_cusp_cross_section.py +298 -0
  150. snappy/geometric_structure/cusp_neighborhood/tiles_for_cusp_neighborhood.py +159 -0
  151. snappy/geometric_structure/cusp_neighborhood/vertices.py +32 -0
  152. snappy/geometric_structure/geodesic/__init__.py +0 -0
  153. snappy/geometric_structure/geodesic/add_core_curves.py +152 -0
  154. snappy/geometric_structure/geodesic/avoid_core_curves.py +369 -0
  155. snappy/geometric_structure/geodesic/canonical_keys.py +52 -0
  156. snappy/geometric_structure/geodesic/check_away_from_core_curve.py +60 -0
  157. snappy/geometric_structure/geodesic/constants.py +6 -0
  158. snappy/geometric_structure/geodesic/exceptions.py +22 -0
  159. snappy/{drilling → geometric_structure/geodesic}/fixed_points.py +34 -9
  160. snappy/{drilling/geodesic_info.py → geometric_structure/geodesic/geodesic_start_point_info.py} +139 -180
  161. snappy/geometric_structure/geodesic/graph_trace_helper.py +67 -0
  162. snappy/geometric_structure/geodesic/line.py +30 -0
  163. snappy/geometric_structure/geodesic/multiplicity.py +127 -0
  164. snappy/geometric_structure/geodesic/tiles_for_geodesic.py +101 -0
  165. snappy/geometric_structure/test.py +22 -0
  166. snappy/gui.py +23 -13
  167. snappy/horoviewer.py +7 -7
  168. snappy/hyperboloid/__init__.py +96 -31
  169. snappy/hyperboloid/distances.py +245 -0
  170. snappy/hyperboloid/horoball.py +19 -0
  171. snappy/hyperboloid/line.py +35 -0
  172. snappy/hyperboloid/point.py +9 -0
  173. snappy/hyperboloid/triangle.py +29 -0
  174. snappy/isometry_signature.py +382 -0
  175. snappy/len_spec/__init__.py +596 -0
  176. snappy/len_spec/geodesic_info.py +110 -0
  177. snappy/len_spec/geodesic_key_info_dict.py +117 -0
  178. snappy/len_spec/geodesic_piece.py +143 -0
  179. snappy/len_spec/geometric_structure.py +182 -0
  180. snappy/len_spec/geometry.py +80 -0
  181. snappy/len_spec/length_spectrum_geodesic_info.py +170 -0
  182. snappy/len_spec/spine.py +206 -0
  183. snappy/len_spec/test.py +24 -0
  184. snappy/len_spec/test_cases.py +69 -0
  185. snappy/len_spec/tile.py +275 -0
  186. snappy/len_spec/word.py +86 -0
  187. snappy/math_basics.py +39 -13
  188. snappy/matrix.py +52 -9
  189. snappy/number.py +12 -6
  190. snappy/numeric_output_checker.py +2 -3
  191. snappy/pari.py +8 -4
  192. snappy/phone_home.py +2 -1
  193. snappy/polyviewer.py +8 -8
  194. snappy/ptolemy/__init__.py +1 -1
  195. snappy/ptolemy/component.py +2 -2
  196. snappy/ptolemy/coordinates.py +25 -25
  197. snappy/ptolemy/findLoops.py +9 -9
  198. snappy/ptolemy/manifoldMethods.py +27 -29
  199. snappy/ptolemy/polynomial.py +50 -57
  200. snappy/ptolemy/processFileBase.py +60 -0
  201. snappy/ptolemy/ptolemyVariety.py +109 -41
  202. snappy/ptolemy/reginaWrapper.py +4 -4
  203. snappy/ptolemy/rur.py +1 -1
  204. snappy/ptolemy/solutionsToPrimeIdealGroebnerBasis.py +9 -9
  205. snappy/ptolemy/test.py +99 -54
  206. snappy/ptolemy/utilities.py +1 -1
  207. snappy/raytracing/__init__.py +64 -0
  208. snappy/raytracing/additional_horospheres.py +64 -0
  209. snappy/raytracing/additional_len_spec_choices.py +63 -0
  210. snappy/raytracing/cohomology_fractal.py +0 -3
  211. snappy/raytracing/eyeball.py +123 -0
  212. snappy/raytracing/finite_raytracing_data.py +17 -17
  213. snappy/raytracing/finite_viewer.py +15 -15
  214. snappy/raytracing/geodesic_tube_info.py +93 -63
  215. snappy/raytracing/geodesics.py +94 -64
  216. snappy/raytracing/geodesics_window.py +56 -34
  217. snappy/raytracing/gui_utilities.py +21 -6
  218. snappy/raytracing/hyperboloid_navigation.py +29 -4
  219. snappy/raytracing/hyperboloid_utilities.py +73 -73
  220. snappy/raytracing/ideal_raytracing_data.py +121 -91
  221. snappy/raytracing/inside_viewer.py +199 -66
  222. snappy/raytracing/pack.py +22 -0
  223. snappy/raytracing/raytracing_data.py +37 -25
  224. snappy/raytracing/raytracing_view.py +70 -65
  225. snappy/raytracing/shaders/Eye.png +0 -0
  226. snappy/raytracing/shaders/NonGeometric.png +0 -0
  227. snappy/raytracing/shaders/__init__.py +39 -3
  228. snappy/raytracing/shaders/fragment.glsl +451 -133
  229. snappy/raytracing/test.py +29 -0
  230. snappy/raytracing/tooltip.py +146 -0
  231. snappy/raytracing/upper_halfspace_utilities.py +42 -9
  232. snappy/sage_helper.py +67 -134
  233. snappy/settings.py +90 -77
  234. snappy/shell.py +2 -0
  235. snappy/snap/character_varieties.py +2 -2
  236. snappy/snap/find_field.py +4 -3
  237. snappy/snap/fundamental_polyhedron.py +2 -2
  238. snappy/snap/kernel_structures.py +5 -1
  239. snappy/snap/nsagetools.py +9 -8
  240. snappy/snap/peripheral/dual_cellulation.py +4 -3
  241. snappy/snap/peripheral/peripheral.py +2 -2
  242. snappy/snap/peripheral/surface.py +5 -5
  243. snappy/snap/peripheral/test.py +1 -1
  244. snappy/snap/polished_reps.py +8 -8
  245. snappy/snap/slice_obs_HKL.py +16 -14
  246. snappy/snap/t3mlite/arrow.py +3 -3
  247. snappy/snap/t3mlite/edge.py +3 -3
  248. snappy/snap/t3mlite/homology.py +2 -2
  249. snappy/snap/t3mlite/mcomplex.py +3 -3
  250. snappy/snap/t3mlite/simplex.py +12 -0
  251. snappy/snap/t3mlite/spun.py +18 -17
  252. snappy/snap/t3mlite/test_vs_regina.py +4 -4
  253. snappy/snap/test.py +37 -53
  254. snappy/snap/utilities.py +4 -5
  255. snappy/test.py +121 -138
  256. snappy/test_cases.py +263 -0
  257. snappy/testing.py +131 -0
  258. snappy/tiling/__init__.py +2 -0
  259. snappy/tiling/canonical_key_dict.py +59 -0
  260. snappy/tiling/dict_based_set.py +79 -0
  261. snappy/tiling/floor.py +49 -0
  262. snappy/tiling/hyperboloid_dict.py +54 -0
  263. snappy/tiling/iter_utils.py +78 -0
  264. snappy/tiling/lifted_tetrahedron.py +22 -0
  265. snappy/tiling/lifted_tetrahedron_set.py +54 -0
  266. snappy/tiling/real_hash_dict.py +164 -0
  267. snappy/tiling/test.py +23 -0
  268. snappy/tiling/tile.py +215 -0
  269. snappy/tiling/triangle.py +33 -0
  270. snappy/tkterminal.py +113 -84
  271. snappy/twister/main.py +1 -7
  272. snappy/twister/twister_core.cp39-win_amd64.pyd +0 -0
  273. snappy/upper_halfspace/__init__.py +78 -17
  274. snappy/verify/__init__.py +3 -7
  275. snappy/verify/{verifyCanonical.py → canonical.py} +78 -70
  276. snappy/verify/complex_volume/adjust_torsion.py +1 -2
  277. snappy/verify/complex_volume/closed.py +13 -13
  278. snappy/verify/complex_volume/cusped.py +6 -6
  279. snappy/verify/complex_volume/extended_bloch.py +5 -8
  280. snappy/verify/{cuspTranslations.py → cusp_translations.py} +1 -1
  281. snappy/verify/edge_equations.py +80 -0
  282. snappy/verify/exceptions.py +0 -55
  283. snappy/verify/{verifyHyperbolicity.py → hyperbolicity.py} +3 -3
  284. snappy/verify/interval_newton_shapes_engine.py +7 -5
  285. snappy/verify/interval_tree.py +5 -5
  286. snappy/verify/krawczyk_shapes_engine.py +17 -18
  287. snappy/verify/maximal_cusp_area_matrix/__init__.py +7 -74
  288. snappy/verify/maximal_cusp_area_matrix/cusp_tiling_engine.py +3 -4
  289. snappy/verify/maximal_cusp_area_matrix/cusp_translate_engine.py +1 -1
  290. snappy/verify/{realAlgebra.py → real_algebra.py} +1 -1
  291. snappy/verify/shapes.py +5 -3
  292. snappy/verify/short_slopes.py +39 -41
  293. snappy/verify/{squareExtensions.py → square_extensions.py} +14 -11
  294. snappy/verify/test.py +57 -60
  295. snappy/verify/upper_halfspace/extended_matrix.py +1 -1
  296. snappy/verify/upper_halfspace/finite_point.py +3 -4
  297. snappy/verify/upper_halfspace/ideal_point.py +9 -9
  298. snappy/verify/volume.py +2 -2
  299. snappy/version.py +2 -2
  300. {snappy-3.1.1.dist-info → snappy-3.2.dist-info}/METADATA +26 -11
  301. snappy-3.2.dist-info/RECORD +503 -0
  302. {snappy-3.1.1.dist-info → snappy-3.2.dist-info}/WHEEL +1 -1
  303. {snappy-3.1.1.dist-info → snappy-3.2.dist-info}/top_level.txt +6 -1
  304. snappy/__pycache__/__init__.cpython-39.pyc +0 -0
  305. snappy/__pycache__/browser.cpython-39.pyc +0 -0
  306. snappy/__pycache__/cache.cpython-39.pyc +0 -0
  307. snappy/__pycache__/database.cpython-39.pyc +0 -0
  308. snappy/__pycache__/db_utilities.cpython-39.pyc +0 -0
  309. snappy/__pycache__/decorated_isosig.cpython-39.pyc +0 -0
  310. snappy/__pycache__/exceptions.cpython-39.pyc +0 -0
  311. snappy/__pycache__/export_stl.cpython-39.pyc +0 -0
  312. snappy/__pycache__/filedialog.cpython-39.pyc +0 -0
  313. snappy/__pycache__/gui.cpython-39.pyc +0 -0
  314. snappy/__pycache__/horoviewer.cpython-39.pyc +0 -0
  315. snappy/__pycache__/math_basics.cpython-39.pyc +0 -0
  316. snappy/__pycache__/matrix.cpython-39.pyc +0 -0
  317. snappy/__pycache__/number.cpython-39.pyc +0 -0
  318. snappy/__pycache__/numeric_output_checker.cpython-39.pyc +0 -0
  319. snappy/__pycache__/pari.cpython-39.pyc +0 -0
  320. snappy/__pycache__/polyviewer.cpython-39.pyc +0 -0
  321. snappy/__pycache__/sage_helper.cpython-39.pyc +0 -0
  322. snappy/__pycache__/version.cpython-39.pyc +0 -0
  323. snappy/doc/_sources/verify_canon.rst.txt +0 -90
  324. snappy/doc/_static/jquery-3.6.0.js +0 -10881
  325. snappy/doc/_static/js/html5shiv-printshiv.min.js +0 -4
  326. snappy/doc/_static/js/html5shiv.min.js +0 -4
  327. snappy/doc/_static/underscore-1.13.1.js +0 -2042
  328. snappy/doc/_static/underscore.js +0 -6
  329. snappy/doc/verify_canon.html +0 -304
  330. snappy/drilling/__pycache__/__init__.cpython-39.pyc +0 -0
  331. snappy/drilling/__pycache__/constants.cpython-39.pyc +0 -0
  332. snappy/drilling/__pycache__/crush.cpython-39.pyc +0 -0
  333. snappy/drilling/__pycache__/cusps.cpython-39.pyc +0 -0
  334. snappy/drilling/__pycache__/debug.cpython-39.pyc +0 -0
  335. snappy/drilling/__pycache__/epsilons.cpython-39.pyc +0 -0
  336. snappy/drilling/__pycache__/exceptions.cpython-39.pyc +0 -0
  337. snappy/drilling/__pycache__/fixed_points.cpython-39.pyc +0 -0
  338. snappy/drilling/__pycache__/geodesic_info.cpython-39.pyc +0 -0
  339. snappy/drilling/__pycache__/geodesic_tube.cpython-39.pyc +0 -0
  340. snappy/drilling/__pycache__/geometric_structure.cpython-39.pyc +0 -0
  341. snappy/drilling/__pycache__/line.cpython-39.pyc +0 -0
  342. snappy/drilling/__pycache__/moves.cpython-39.pyc +0 -0
  343. snappy/drilling/__pycache__/peripheral_curves.cpython-39.pyc +0 -0
  344. snappy/drilling/__pycache__/perturb.cpython-39.pyc +0 -0
  345. snappy/drilling/__pycache__/quotient_space.cpython-39.pyc +0 -0
  346. snappy/drilling/__pycache__/spatial_dict.cpython-39.pyc +0 -0
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- <h1>Development Basics<a class="headerlink" href="#development-basics" title="Permalink to this heading"></a></h1>
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- <h2>Submitting patches<a class="headerlink" href="#submitting-patches" title="Permalink to this heading"></a></h2>
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- <p>The source code for SnapPy and its various parts are <a class="reference external" href="https://github.com/3-manifolds">hosted on GitHub</a> as <a class="reference external" href="https://git-scm.com/">Git repositories</a>. To contribute a patch, create a free
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- <p>Here is how to get a clean development setup under macOS.</p>
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- <ul>
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- <li><p>Install the latest Python 3.8 from Python.org using the <a class="reference external" href="http://www.python.org/download/">Mac
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- path so that “python3” is:</p>
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- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="o">/</span><span class="n">Library</span><span class="o">/</span><span class="n">Frameworks</span><span class="o">/</span><span class="n">Python</span><span class="o">.</span><span class="n">framework</span><span class="o">/</span><span class="n">Versions</span><span class="o">/</span><span class="mf">3.8</span><span class="o">/</span><span class="nb">bin</span><span class="o">/</span><span class="n">python3</span>
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- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="o">--</span><span class="n">upgrade</span> <span class="n">setuptools</span> <span class="n">virtualenv</span> <span class="n">wheel</span> <span class="n">pip</span>
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- <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">cython</span> <span class="c1"># Used for Python-C interfacing</span>
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- <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">sphinx</span> <span class="c1"># For building the documentation</span>
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- <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">ipython</span> <span class="c1"># Improved Python shell</span>
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- <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">py2app</span> <span class="c1"># For making app bundles</span>
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- <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">pyx</span> <span class="n">FXrays</span> <span class="n">low_index</span>
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- <span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">spherogram</span><span class="o">.</span><span class="n">git</span>
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- <span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">snappy</span><span class="o">.</span><span class="n">git</span>
131
- </pre></div>
132
- </div>
133
- </li>
134
- <li><p>Test the stand-alone link editor:</p>
135
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="n">plink</span>
136
- <span class="n">python3</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
137
- <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">plink</span><span class="o">.</span><span class="n">app</span> <span class="c1"># Link editor appears!</span>
138
- </pre></div>
139
- </div>
140
- <p>This last command runs the script “plink/app.py”; the real code for
141
- the link editor is in “plink/__init__.py”.</p>
142
- </li>
143
- <li><p>Build and install Spherogram:</p>
144
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="o">../</span><span class="n">spherogram</span>
145
- <span class="n">python3</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
146
- <span class="n">python3</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">test</span>
147
- </pre></div>
148
- </div>
149
- </li>
150
- <li><p>Now build SnapPy itself. One builds it twice to generate the
151
- documentation, much of which is extracted from the installed module:</p>
152
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="o">../</span><span class="n">snappy</span>
153
- <span class="n">python3</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
154
- <span class="n">python3</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">test</span> <span class="c1"># Run the tests; pretty picture should appear.</span>
155
- <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">snappy</span><span class="o">.</span><span class="n">app</span> <span class="c1">#SnapPy starts!</span>
156
- </pre></div>
157
- </div>
158
- <p>To build the clickable app, just do the following:</p>
159
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="n">mac_osx_app</span>
160
- <span class="n">python3</span> <span class="n">release</span><span class="o">.</span><span class="n">py</span> <span class="o">--</span><span class="n">manual</span>
161
- </pre></div>
162
- </div>
163
- <p>though for general development purposes <code class="docutils literal notranslate"><span class="pre">python3</span> <span class="pre">-m</span> <span class="pre">snappy.app</span></code> is
164
- usually the way to go.</p>
165
- </li>
166
- </ul>
167
- <p>Some major parts of the SnapPy codebase are:</p>
168
- <ul class="simple">
169
- <li><p>“SnapPy.pyx”, “SnapPycore.pxi”, “SnapPy.pxi”: The Cython interface
170
- to the SnapPea kernel</p></li>
171
- <li><p>“opengl/CyOpenGL*.pyx”: The Cython interface to OpenGL*</p></li>
172
- <li><p>“snappy/app.py”: The core GUI code</p></li>
173
- <li><p>“snappy/polyviewer.py”: The GUI code for Dirichlet domains</p></li>
174
- <li><p>“snappy/horoviewer.py”: The GUI code for horoball pictures</p></li>
175
- <li><p>“snappy/database.py”: Interacts with the sqlite3 manifold database</p></li>
176
- </ul>
177
- <p>In addition, Jeff’s old prototype for a Tk-based UI can be found in
178
- “misc/JeffsOldUI/SnapPeaGUI.py”; just run Python on this file to try it
179
- out, after installing <a class="reference external" href="http://pmw.sf.net">PythonMegaWidgets</a>.</p>
180
- </section>
181
- <section id="windows">
182
- <h2>Windows<a class="headerlink" href="#windows" title="Permalink to this heading"></a></h2>
183
- <p>These instructions have been tested on Windows 10, and describe
184
- setting up a development environment using the (free) MSVC
185
- compiler. To build the CyPari subcomponent, which few will want or
186
- need to do, one must install additional tools.</p>
187
- <ul>
188
- <li><p>Install <a class="reference external" href="https://www.python.org/downloads/windows/">Python 3.7</a>,
189
- specifically the 32 bit version (Windows x86 not Windows x86-64).
190
- These instructions assume it has been installed in the directory
191
- <code class="docutils literal notranslate"><span class="pre">C:\Python37</span></code> which is not the default.</p></li>
192
- <li><p>With Python 3.7.4, you need the MSVC command line tools. You can
193
- get them by using Microsoft’s free <a class="reference external" href="https://visualstudio.microsoft.com/thank-you-downloading-visual-studio/?sku=BuildTools&amp;rel=16">Build Tools for Visual Studio 2019</a>
194
- installer and selecting the “C++ command line tools” and installing
195
- the following subpackages: “MSVC v142 - VS 2019 C++ build tools”,
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- “Testing tools core features”, “C++/CLI support for v142”, and
197
- Windows 10 SDK (most recent version)”.</p>
198
- <p>If you would like to make your own installer you will also need
199
- <a class="reference external" href="http://www.jrsoftware.org/isdl.php">Inno Setup</a>, specifically the
200
- unicode version; tested with version 5.5.9.</p>
201
- </li>
202
- <li><p>Install whichever version of <a class="reference external" href="http://msys2.github.io">MSYS2</a> is
203
- appropriate for your version Windows. Most commonly, you will have
204
- a 64-bit Windows and hence want the “x86_64” installer; for
205
- concreteness the rest of these instructions assume this. (Technical
206
- note: even if you want to build 32-bit binaries, if your Windows is
207
- 64-bit you want the x86_64 installer.) Follow the instructions on
208
- the webpage to update everything to the very latest MSYS2
209
- (<code class="docutils literal notranslate"><span class="pre">pacman</span> <span class="pre">-Sy</span> <span class="pre">pacman;</span> <span class="pre">pacman</span> <span class="pre">-Syu;</span> <span class="pre">pacman</span> <span class="pre">-Su</span></code> etc.).</p></li>
210
- <li><p>Make a shortcut to <code class="docutils literal notranslate"><span class="pre">c:\msys64\msys2.exe</span></code> as you will be using it all
211
- the time; alternatively, pin <code class="docutils literal notranslate"><span class="pre">mys2.exe</span></code> to your taskbar.</p></li>
212
- <li><p>Install some additional packages:</p>
213
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">pacman</span> <span class="o">-</span><span class="n">S</span> <span class="n">git</span> <span class="n">make</span> <span class="n">nano</span> <span class="n">openssh</span> <span class="n">perl</span> <span class="n">tar</span> <span class="n">unzip</span> <span class="n">wget</span> <span class="n">winpty</span> <span class="n">patch</span>
214
- </pre></div>
215
- </div>
216
- </li>
217
- <li><p>Install your favorite text editor, for example you can install Emacs
218
- via:</p>
219
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">pacman</span> <span class="o">-</span><span class="n">S</span> <span class="n">mingw</span><span class="o">-</span><span class="n">w64</span><span class="o">-</span><span class="n">x86_64</span><span class="o">-</span><span class="n">emacs</span>
220
- </pre></div>
221
- </div>
222
- </li>
223
- <li><p>Make it so that MinGW, Python, and Inno Setup are all in your PATH,
224
- as well as work around some stupid bug, by making the end of your
225
- “~/.bash_profile” file to read:</p>
226
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span>PATH=/c/Python37:/c/Python37/Scripts:$PATH
227
- PATH=$PATH:&#39;/c/Program Files (x86)/Inno Setup 5&#39;
228
- export PATH
229
- alias emacs=&quot;/mingw64/bin/emacs&quot;
230
- winpty bash; exit
231
- </pre></div>
232
- </div>
233
- <p>For example, do:</p>
234
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">nano</span> <span class="o">~/.</span><span class="n">bash_profile</span>
235
- </pre></div>
236
- </div>
237
- </li>
238
- <li><p>Make sure you have the right version of Python in your path by
239
- typing:</p>
240
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python</span> <span class="o">--</span><span class="n">version</span>
241
- </pre></div>
242
- </div>
243
- <p>You should see something like <code class="docutils literal notranslate"><span class="pre">Python</span> <span class="pre">3.7.4</span></code>.</p>
244
- </li>
245
- <li><p>Use pip to install some basic tools:</p>
246
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="o">--</span><span class="n">upgrade</span> <span class="n">pip</span> <span class="n">setuptools</span> <span class="n">wheel</span> <span class="c1"># Upgrades pip to the current version.</span>
247
- <span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">pyreadline</span> <span class="n">sphinx</span> <span class="n">cython</span> <span class="n">cypari</span> <span class="n">pyx</span> <span class="n">FXrays</span> <span class="n">low_index</span>
248
- </pre></div>
249
- </div>
250
- </li>
251
- <li><p>Fetch the latest development versions of the source straight from
252
- the t3m repository:</p>
253
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">plink</span><span class="o">.</span><span class="n">git</span>
254
- <span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">spherogram</span><span class="o">.</span><span class="n">git</span>
255
- <span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">snappy</span><span class="o">.</span><span class="n">git</span>
256
- </pre></div>
257
- </div>
258
- </li>
259
- <li><p>Build the components, from easiest to hardest, and then test:</p>
260
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="n">plink</span>
261
- <span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
262
- <span class="n">cd</span> <span class="o">../</span><span class="n">Spherogram</span>
263
- <span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
264
- <span class="n">cd</span> <span class="o">../</span><span class="n">SnapPy</span>
265
- <span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
266
- <span class="n">cd</span> <span class="o">..</span>
267
- <span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">SnapPy</span><span class="o">.</span><span class="n">test</span>
268
- </pre></div>
269
- </div>
270
- </li>
271
- <li><p>To run the app, you can just do:</p>
272
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">snappy</span><span class="o">.</span><span class="n">app</span>
273
- </pre></div>
274
- </div>
275
- </li>
276
- <li><p>To build the binary installer, you need PyInstaller:</p>
277
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">pyinstaller</span>
278
- </pre></div>
279
- </div>
280
- <p>To build the binary installer do:</p>
281
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="n">windows_exe</span>
282
- <span class="n">python</span> <span class="n">make</span><span class="o">.</span><span class="n">py</span>
283
- </pre></div>
284
- </div>
285
- <p>You will need to close the SnapPy window that pops up here to
286
- complete the build process.</p>
287
- </li>
288
- <li><p>Useful tips for those coming from Unix. In MSYS2, your home
289
- directory is really something like:</p>
290
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">c</span><span class="p">:</span>\<span class="n">msys2</span>\<span class="n">home</span>\<span class="n">Nathan</span> <span class="n">Dunfield</span>
291
- </pre></div>
292
- </div>
293
- <p>whereas your Windows 10 home directory is:</p>
294
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">c</span><span class="p">:</span>\<span class="n">Users</span>\<span class="n">Nathan</span> <span class="n">Dunfield</span>
295
- </pre></div>
296
- </div>
297
- <p>It is handy to have symbolic links from your MSYS2 home directory to
298
- the Downloads and Desktop folders on the Windows side. <a class="reference external" href="http://www.howtogeek.com/howto/16226/">See this
299
- discussion</a>, but basically
300
- you start a “Command Prompt” as Administrator and do:</p>
301
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="s2">&quot;C:\msys64\home\Nathan Dunfield&quot;</span>
302
- <span class="n">mklink</span> <span class="o">/</span><span class="n">D</span> <span class="n">Desktop</span> <span class="s2">&quot;C:\Users\Nathan Dunfield\Desktop&quot;</span>
303
- <span class="n">mklink</span> <span class="o">/</span><span class="n">D</span> <span class="n">Downloads</span> <span class="s2">&quot;C:\Users\Nathan Dunfield\Downloads&quot;</span>
304
- </pre></div>
305
- </div>
306
- </li>
307
- <li><p>To build CyPari, first install the 32-bit gcc compiler:</p>
308
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">pacman</span> <span class="o">-</span><span class="n">S</span> <span class="n">mingw</span><span class="o">-</span><span class="n">w64</span><span class="o">-</span><span class="n">i686</span><span class="o">-</span><span class="n">gcc</span>
309
- </pre></div>
310
- </div>
311
- <p>Then open a <em>MinGW32 terminal window</em>, which is <strong>different</strong> than a
312
- MSYS2 terminal, and can be started via <cite>c:msys64mingw32.exe</cite>.
313
- This will put the 32-bit gcc in your path and set the correct
314
- “uname”. Now do:</p>
315
- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">CyPari</span><span class="o">.</span><span class="n">git</span>
316
- <span class="n">cd</span> <span class="n">CyPari</span>
317
- <span class="n">sh</span> <span class="n">build_pari</span><span class="o">.</span><span class="n">sh</span>
318
- <span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">build</span> <span class="o">--</span><span class="n">compiler</span><span class="o">=</span><span class="n">mingw32</span>
319
- <span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">install</span>
320
- <span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">cypari</span><span class="o">.</span><span class="n">test</span> <span class="c1"># About 30 tests will fail.</span>
321
- </pre></div>
322
- </div>
323
- <p>Warning: CyPari will not build if there are spaces in the path to
324
- the CyPari directory.</p>
325
- </li>
326
- </ul>
327
- </section>
328
- <section id="linux">
329
- <h2>Linux<a class="headerlink" href="#linux" title="Permalink to this heading"></a></h2>
330
- <p>See the <a class="reference internal" href="installing.html#generic-unix"><span class="std std-ref">installation instructions on generic Unix</span></a> for how to build SnapPy from source.</p>
331
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332
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+ <input type="hidden" name="area" value="default" />
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+ </form>
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+ </div>
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+ </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
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+ <ul class="current">
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+ <li class="toctree-l1"><a class="reference internal" href="installing.html">Installing SnapPy</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="screenshots.html">Screenshots: SnapPy in action</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="tutorial.html">Tutorial</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="snappy.html">The snappy module and its classes</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="plink.html">Using SnapPy’s link editor</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="spherogram.html">Links: planar diagrams and invariants</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="snap.html">Number theory of hyperbolic 3-manifolds</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="verify.html">Verified computations</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="other.html">Other components</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="news.html">News</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="credits.html">Credits</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="bugs.html">Reporting bugs and other problems</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="todo.html">To Do List</a></li>
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+ <li class="toctree-l1 current"><a class="current reference internal" href="#">Development Basics</a><ul>
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+ <li class="toctree-l2"><a class="reference internal" href="#submitting-patches">Submitting patches</a></li>
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+ <li class="toctree-l2"><a class="reference internal" href="#macos">macOS</a></li>
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+ <li class="toctree-l2"><a class="reference internal" href="#windows">Windows</a></li>
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+ <li class="toctree-l2"><a class="reference internal" href="#linux">Linux</a></li>
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+ </ul>
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+ </li>
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+ </ul>
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+
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+ </div>
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+ </div>
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+ </nav>
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+
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+ <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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+ <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
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+ <a href="index.html">SnapPy</a>
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+ </nav>
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+
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+ <div class="wy-nav-content">
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+ <div class="rst-content">
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+ <div role="navigation" aria-label="Page navigation">
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+ <ul class="wy-breadcrumbs">
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+ <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
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+ <li class="breadcrumb-item active">Development Basics</li>
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+ <li class="wy-breadcrumbs-aside">
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+ </li>
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+ </ul>
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+ <hr/>
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+ </div>
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+ <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
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+ <div itemprop="articleBody">
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+
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+ <section id="development-basics">
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+ <h1>Development Basics<a class="headerlink" href="#development-basics" title="Link to this heading"></a></h1>
95
+ <section id="submitting-patches">
96
+ <h2>Submitting patches<a class="headerlink" href="#submitting-patches" title="Link to this heading"></a></h2>
97
+ <p>The source code for SnapPy and its various parts are <a class="reference external" href="https://github.com/3-manifolds">hosted on GitHub</a> as <a class="reference external" href="https://git-scm.com/">Git repositories</a>. To contribute a patch, create a free
98
+ GitHub account, fork the appropriate repository, and then send us a
99
+ pull request, as described in <a class="reference external" href="https://help.github.com/en/github/collaborating-with-issues-and-pull-requests/creating-a-pull-request">here</a>.</p>
100
+ </section>
101
+ <section id="macos">
102
+ <h2>macOS<a class="headerlink" href="#macos" title="Link to this heading"></a></h2>
103
+ <p>Here is how to get a clean development setup under macOS.</p>
104
+ <ul>
105
+ <li><p>Install the latest Python 3.13 from Python.org using the <a class="reference external" href="http://www.python.org/download/">Mac
106
+ Installer Disk Image</a>. Set your
107
+ path so that “python3” is:</p>
108
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="o">/</span><span class="n">Library</span><span class="o">/</span><span class="n">Frameworks</span><span class="o">/</span><span class="n">Python</span><span class="o">.</span><span class="n">framework</span><span class="o">/</span><span class="n">Versions</span><span class="o">/</span><span class="mf">3.13</span><span class="o">/</span><span class="nb">bin</span><span class="o">/</span><span class="n">python3</span>
109
+ </pre></div>
110
+ </div>
111
+ </li>
112
+ <li><p>Use <a class="reference external" href="https://pip.pypa.io/en/latest/index.html">pip</a> to install the
113
+ following packages:</p>
114
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="o">--</span><span class="n">upgrade</span> <span class="n">setuptools</span> <span class="n">virtualenv</span> <span class="n">wheel</span> <span class="n">pip</span>
115
+ <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">cython</span> <span class="c1"># Used for Python-C interfacing</span>
116
+ <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">sphinx</span> <span class="c1"># For building the documentation</span>
117
+ <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">ipython</span> <span class="c1"># Improved Python shell</span>
118
+ <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">py2app</span> <span class="c1"># For making app bundles</span>
119
+ <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">pyx</span> <span class="n">FXrays</span> <span class="n">low_index</span>
120
+ </pre></div>
121
+ </div>
122
+ </li>
123
+ <li><p>Get the source code from the repository, using Git. For
124
+ example you can install Git via its <a class="reference external" href="https://www.git-scm.org/">package installer</a>. Now do:</p>
125
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">plink</span><span class="o">.</span><span class="n">git</span>
126
+ <span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">spherogram</span><span class="o">.</span><span class="n">git</span>
127
+ <span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">snappy</span><span class="o">.</span><span class="n">git</span>
128
+ </pre></div>
129
+ </div>
130
+ </li>
131
+ <li><p>Test the stand-alone link editor:</p>
132
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="n">plink</span>
133
+ <span class="n">python3</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
134
+ <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">plink</span><span class="o">.</span><span class="n">app</span> <span class="c1"># Link editor appears!</span>
135
+ </pre></div>
136
+ </div>
137
+ <p>This last command runs the script <code class="docutils literal notranslate"><span class="pre">plink/app.py</span></code>; the real code for
138
+ the link editor is in <code class="docutils literal notranslate"><span class="pre">plink/__init__.py</span></code>.</p>
139
+ </li>
140
+ <li><p>Build and install Spherogram:</p>
141
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="o">../</span><span class="n">spherogram</span>
142
+ <span class="n">python3</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
143
+ <span class="n">python3</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">test</span>
144
+ </pre></div>
145
+ </div>
146
+ </li>
147
+ <li><p>Now build SnapPy itself. One builds it twice to generate the
148
+ documentation, much of which is extracted from the installed module:</p>
149
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="o">../</span><span class="n">snappy</span>
150
+ <span class="n">python3</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
151
+ <span class="n">python3</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">test</span> <span class="c1"># Run the tests; pretty picture should appear.</span>
152
+ <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">snappy</span><span class="o">.</span><span class="n">app</span> <span class="c1">#SnapPy starts!</span>
153
+ </pre></div>
154
+ </div>
155
+ <p>To build the clickable app, just do the following:</p>
156
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="n">mac_osx_app</span>
157
+ <span class="n">python3</span> <span class="n">release</span><span class="o">.</span><span class="n">py</span> <span class="o">--</span><span class="n">manual</span>
158
+ </pre></div>
159
+ </div>
160
+ <p>though for general development purposes <code class="docutils literal notranslate"><span class="pre">python3</span> <span class="pre">-m</span> <span class="pre">snappy.app</span></code> is
161
+ usually the way to go.</p>
162
+ </li>
163
+ </ul>
164
+ <p>Some major parts of the SnapPy codebase are:</p>
165
+ <ul class="simple">
166
+ <li><p><code class="docutils literal notranslate"><span class="pre">SnapPy.pyx</span></code>, <code class="docutils literal notranslate"><span class="pre">SnapPycore.pxi</span></code>, <code class="docutils literal notranslate"><span class="pre">SnapPy.pxi</span></code>: The Cython interface
167
+ to the SnapPea kernel</p></li>
168
+ <li><p><code class="docutils literal notranslate"><span class="pre">opengl/CyOpenGL*.pyx</span></code>: The Cython interface to OpenGL*</p></li>
169
+ <li><p><code class="docutils literal notranslate"><span class="pre">snappy/app.py</span></code>: The core GUI code</p></li>
170
+ <li><p><code class="docutils literal notranslate"><span class="pre">snappy/polyviewer.py</span></code>: The GUI code for Dirichlet domains</p></li>
171
+ <li><p><code class="docutils literal notranslate"><span class="pre">snappy/horoviewer.py</span></code>: The GUI code for horoball pictures</p></li>
172
+ <li><p><code class="docutils literal notranslate"><span class="pre">snappy/database.py</span></code>: Interacts with the sqlite3 manifold database</p></li>
173
+ </ul>
174
+ </section>
175
+ <section id="windows">
176
+ <h2>Windows<a class="headerlink" href="#windows" title="Link to this heading"></a></h2>
177
+ <p>These instructions have been tested on Windows 10, and describe
178
+ setting up a development environment using the (free) MSVC
179
+ compiler. To build the CyPari subcomponent, which few will want or
180
+ need to do, one must install additional tools.</p>
181
+ <ul>
182
+ <li><p>Install <a class="reference external" href="https://www.python.org/downloads/windows/">Python 3.13.1</a>, specifically the
183
+ default 64-bit version (the file name will end in <code class="docutils literal notranslate"><span class="pre">amd64.exe</span></code>).
184
+ These instructions assume it has been installed in the directory
185
+ <code class="docutils literal notranslate"><span class="pre">C:\Python313</span></code> which is not the default.</p></li>
186
+ <li><p>With Python 3.13.1, you need the MSVC command line tools. You can
187
+ get them by using Microsoft’s free <a class="reference external" href="https://visualstudio.microsoft.com/thank-you-downloading-visual-studio/?sku=BuildTools&amp;rel=16">Build Tools for Visual Studio 2019</a>
188
+ installer and selecting the “C++ command line tools” and installing
189
+ the following subpackages: “MSVC v142 - VS 2019 C++ build tools”,
190
+ “Testing tools core features”, “C++/CLI support for v142”, and
191
+ “Windows 10 SDK (most recent version)”.</p>
192
+ <p>If you would like to make your own installer you will also need
193
+ <a class="reference external" href="http://www.jrsoftware.org/isdl.php">Inno Setup</a>, specifically the
194
+ unicode version; tested with version 5.5.9.</p>
195
+ </li>
196
+ <li><p>Install <a class="reference external" href="http://msys2.github.io">MSYS2</a> as appropriate for your
197
+ version Windows. Follow the instructions on the webpage to update
198
+ everything to the very latest MSYS2 (<code class="docutils literal notranslate"><span class="pre">pacman</span> <span class="pre">-Sy</span> <span class="pre">pacman;</span> <span class="pre">pacman</span>
199
+ <span class="pre">-Syu;</span> <span class="pre">pacman</span> <span class="pre">-Su</span></code> etc.). You should also install the ucrt toolchain:</p>
200
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">pacman</span> <span class="o">-</span><span class="n">S</span> <span class="n">mingw</span><span class="o">-</span><span class="n">w64</span><span class="o">-</span><span class="n">ucrt</span><span class="o">-</span><span class="n">x86_64</span><span class="o">-</span><span class="n">toolchain</span>
201
+ </pre></div>
202
+ </div>
203
+ </li>
204
+ <li><p>Make a shortcut to <code class="docutils literal notranslate"><span class="pre">c:\msys64\msys2.exe</span></code> as you will be using it all
205
+ the time; alternatively, pin <code class="docutils literal notranslate"><span class="pre">mys2.exe</span></code> to your taskbar.</p></li>
206
+ <li><p>Install some additional packages:</p>
207
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">pacman</span> <span class="o">-</span><span class="n">S</span> <span class="n">git</span> <span class="n">make</span> <span class="n">nano</span> <span class="n">openssh</span> <span class="n">perl</span> <span class="n">tar</span> <span class="n">unzip</span> <span class="n">wget</span> <span class="n">winpty</span> <span class="n">patch</span>
208
+ </pre></div>
209
+ </div>
210
+ </li>
211
+ <li><p>Install your favorite text editor, for example you can install Emacs
212
+ via:</p>
213
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">pacman</span> <span class="o">-</span><span class="n">S</span> <span class="n">mingw</span><span class="o">-</span><span class="n">w64</span><span class="o">-</span><span class="n">x86_64</span><span class="o">-</span><span class="n">emacs</span>
214
+ </pre></div>
215
+ </div>
216
+ </li>
217
+ <li><p>Make it so that MinGW, Python, and Inno Setup are all in your PATH,
218
+ as well as work around some stupid bug, by making the end of your
219
+ “~/.bash_profile” file to read:</p>
220
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span>PATH=/c/Python313:/c/Python313/Scripts:$PATH
221
+ PATH=$PATH:&#39;/c/Program Files (x86)/Inno Setup 5&#39;
222
+ export PATH
223
+ alias emacs=&quot;/mingw64/bin/emacs&quot;
224
+ winpty bash; exit
225
+ </pre></div>
226
+ </div>
227
+ <p>For example, do:</p>
228
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">nano</span> <span class="o">~/.</span><span class="n">bash_profile</span>
229
+ </pre></div>
230
+ </div>
231
+ </li>
232
+ <li><p>Make sure you have the right version of Python in your path by
233
+ typing:</p>
234
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python</span> <span class="o">--</span><span class="n">version</span>
235
+ </pre></div>
236
+ </div>
237
+ <p>You should see something like <code class="docutils literal notranslate"><span class="pre">Python</span> <span class="pre">3.13.1</span></code>.</p>
238
+ </li>
239
+ <li><p>Use pip to install some basic tools:</p>
240
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="o">--</span><span class="n">upgrade</span> <span class="n">pip</span> <span class="n">setuptools</span> <span class="n">wheel</span> <span class="c1"># Upgrades pip to the current version.</span>
241
+ <span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">pyreadline</span> <span class="n">sphinx</span> <span class="n">cython</span> <span class="n">cypari</span> <span class="n">pyx</span> <span class="n">FXrays</span> <span class="n">low_index</span>
242
+ </pre></div>
243
+ </div>
244
+ </li>
245
+ <li><p>Fetch the latest development versions of the source straight from
246
+ the t3m repository:</p>
247
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">plink</span><span class="o">.</span><span class="n">git</span>
248
+ <span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">spherogram</span><span class="o">.</span><span class="n">git</span>
249
+ <span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">snappy</span><span class="o">.</span><span class="n">git</span>
250
+ </pre></div>
251
+ </div>
252
+ </li>
253
+ <li><p>Build the components, from easiest to hardest, and then test:</p>
254
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="n">plink</span>
255
+ <span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
256
+ <span class="n">cd</span> <span class="o">../</span><span class="n">Spherogram</span>
257
+ <span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
258
+ <span class="n">cd</span> <span class="o">../</span><span class="n">SnapPy</span>
259
+ <span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
260
+ <span class="n">cd</span> <span class="o">..</span>
261
+ <span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">SnapPy</span><span class="o">.</span><span class="n">test</span>
262
+ </pre></div>
263
+ </div>
264
+ </li>
265
+ <li><p>To run the app, you can just do:</p>
266
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">snappy</span><span class="o">.</span><span class="n">app</span>
267
+ </pre></div>
268
+ </div>
269
+ </li>
270
+ <li><p>To build the binary installer, you need PyInstaller:</p>
271
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">pyinstaller</span>
272
+ </pre></div>
273
+ </div>
274
+ <p>To build the binary installer do:</p>
275
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="n">windows_exe</span>
276
+ <span class="n">python</span> <span class="n">make</span><span class="o">.</span><span class="n">py</span>
277
+ </pre></div>
278
+ </div>
279
+ <p>You will need to close the SnapPy window that pops up here to
280
+ complete the build process.</p>
281
+ </li>
282
+ <li><p>Useful tips for those coming from Unix. In MSYS2, your home
283
+ directory is really something like:</p>
284
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">c</span><span class="p">:</span>\<span class="n">msys2</span>\<span class="n">home</span>\<span class="n">Nathan</span> <span class="n">Dunfield</span>
285
+ </pre></div>
286
+ </div>
287
+ <p>whereas your Windows 10 home directory is:</p>
288
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">c</span><span class="p">:</span>\<span class="n">Users</span>\<span class="n">Nathan</span> <span class="n">Dunfield</span>
289
+ </pre></div>
290
+ </div>
291
+ <p>It is handy to have symbolic links from your MSYS2 home directory to
292
+ the Downloads and Desktop folders on the Windows side. <a class="reference external" href="http://www.howtogeek.com/howto/16226/">See this
293
+ discussion</a>, but basically
294
+ you start a “Command Prompt” as Administrator and do:</p>
295
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="s2">&quot;C:\msys64\home\Nathan Dunfield&quot;</span>
296
+ <span class="n">mklink</span> <span class="o">/</span><span class="n">D</span> <span class="n">Desktop</span> <span class="s2">&quot;C:\Users\Nathan Dunfield\Desktop&quot;</span>
297
+ <span class="n">mklink</span> <span class="o">/</span><span class="n">D</span> <span class="n">Downloads</span> <span class="s2">&quot;C:\Users\Nathan Dunfield\Downloads&quot;</span>
298
+ </pre></div>
299
+ </div>
300
+ </li>
301
+ </ul>
302
+ </section>
303
+ <section id="linux">
304
+ <h2>Linux<a class="headerlink" href="#linux" title="Link to this heading"></a></h2>
305
+ <p>Things you’ll need:</p>
306
+ <ul>
307
+ <li><p>Python 3 with Tkinter: You’ll need to have <a class="reference external" href="http://python.org">Python</a> (version 3.9 or newer) and <a class="reference external" href="http://tcl.tk">Tk</a> (at least version 8.5) with <a class="reference external" href="http://wiki.python.org/moin/TkInter">Tkinter</a> to connect them, including
308
+ the header files. For instance, on Debian or Ubuntu, install the
309
+ packages “python3-tk”, “python3-pip”, and “python3-dev”. On Fedora,
310
+ you’ll want e.g. “python3-tkinter”, “python3-pip”, and
311
+ “python3-devel”, and “python3-wheel”.</p></li>
312
+ <li><p>Test that Python is in order by installing PLink from source:</p>
313
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="o">--</span><span class="n">user</span> <span class="n">plink</span>
314
+ <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">plink</span><span class="o">.</span><span class="n">app</span> <span class="c1"># Should start the link editor!</span>
315
+ </pre></div>
316
+ </div>
317
+ </li>
318
+ </ul>
319
+ <ul id="openglmesa">
320
+ <li><p>Support for OpenGL (3D graphics): This is built in on OS X and the
321
+ most installations of Fedora and Ubuntu. But you’ll need the <a class="reference external" href="http://www.mesa3d.org/">MESA</a> header files “gl.h” and “glu.h” to compile
322
+ SnapPy. On Debian and Ubuntu, install “libglu1-mesa-dev”; On Fedora install
323
+ “mesa-libGLU-devel”.</p></li>
324
+ <li><p><a class="reference external" href="http://cython.org">Cython</a>, which you can install via:</p>
325
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="o">--</span><span class="n">user</span> <span class="n">cython</span>
326
+ </pre></div>
327
+ </div>
328
+ </li>
329
+ <li><p>The gcc C++ compiler, g++.</p></li>
330
+ <li><p>Fetch the latest development versions of the source straight from
331
+ the repository:</p>
332
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">PLink</span><span class="o">.</span><span class="n">git</span>
333
+ <span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">Spherogram</span><span class="o">.</span><span class="n">git</span>
334
+ <span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">Snappy</span><span class="o">.</span><span class="n">git</span>
335
+ </pre></div>
336
+ </div>
337
+ </li>
338
+ <li><p>Build the components, from easiest to hardest, and then test:</p>
339
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="n">PLink</span>
340
+ <span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
341
+ <span class="n">cd</span> <span class="o">../</span><span class="n">Spherogram</span>
342
+ <span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
343
+ <span class="n">cd</span> <span class="o">../</span><span class="n">SnapPy</span>
344
+ <span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
345
+ <span class="n">cd</span> <span class="o">..</span>
346
+ <span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">SnapPy</span><span class="o">.</span><span class="n">test</span>
347
+ </pre></div>
348
+ </div>
349
+ </li>
350
+ </ul>
351
+ </section>
352
+ </section>
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+
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+
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+ <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
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