sequenzo 0.1.18__cp311-cp311-win_amd64.whl → 0.1.20__cp311-cp311-win_amd64.whl

sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h

@@ -1,682 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2008-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_CHOLMODSUPPORT_H
-#define EIGEN_CHOLMODSUPPORT_H
-
-namespace Eigen {
-
-namespace internal {
-
-template<typename Scalar> struct cholmod_configure_matrix;
-
-template<> struct cholmod_configure_matrix<double> {
-  template<typename CholmodType>
-  static void run(CholmodType& mat) {
-    mat.xtype = CHOLMOD_REAL;
-    mat.dtype = CHOLMOD_DOUBLE;
-  }
-};
-
-template<> struct cholmod_configure_matrix<std::complex<double> > {
-  template<typename CholmodType>
-  static void run(CholmodType& mat) {
-    mat.xtype = CHOLMOD_COMPLEX;
-    mat.dtype = CHOLMOD_DOUBLE;
-  }
-};
-
-// Other scalar types are not yet supported by Cholmod
-// template<> struct cholmod_configure_matrix<float> {
-//   template<typename CholmodType>
-//   static void run(CholmodType& mat) {
-//     mat.xtype = CHOLMOD_REAL;
-//     mat.dtype = CHOLMOD_SINGLE;
-//   }
-// };
-//
-// template<> struct cholmod_configure_matrix<std::complex<float> > {
-//   template<typename CholmodType>
-//   static void run(CholmodType& mat) {
-//     mat.xtype = CHOLMOD_COMPLEX;
-//     mat.dtype = CHOLMOD_SINGLE;
-//   }
-// };
-
-} // namespace internal
-
-/** Wraps the Eigen sparse matrix \a mat into a Cholmod sparse matrix object.
-  * Note that the data are shared.
-  */
-template<typename _Scalar, int _Options, typename _StorageIndex>
-cholmod_sparse viewAsCholmod(Ref<SparseMatrix<_Scalar,_Options,_StorageIndex> > mat)
-{
-  cholmod_sparse res;
-  res.nzmax   = mat.nonZeros();
-  res.nrow    = mat.rows();
-  res.ncol    = mat.cols();
-  res.p       = mat.outerIndexPtr();
-  res.i       = mat.innerIndexPtr();
-  res.x       = mat.valuePtr();
-  res.z       = 0;
-  res.sorted  = 1;
-  if(mat.isCompressed())
-  {
-    res.packed  = 1;
-    res.nz = 0;
-  }
-  else
-  {
-    res.packed  = 0;
-    res.nz = mat.innerNonZeroPtr();
-  }
-
-  res.dtype   = 0;
-  res.stype   = -1;
-
-  if (internal::is_same<_StorageIndex,int>::value)
-  {
-    res.itype = CHOLMOD_INT;
-  }
-  else if (internal::is_same<_StorageIndex,SuiteSparse_long>::value)
-  {
-    res.itype = CHOLMOD_LONG;
-  }
-  else
-  {
-    eigen_assert(false && "Index type not supported yet");
-  }
-
-  // setup res.xtype
-  internal::cholmod_configure_matrix<_Scalar>::run(res);
-
-  res.stype = 0;
-
-  return res;
-}
-
-template<typename _Scalar, int _Options, typename _Index>
-const cholmod_sparse viewAsCholmod(const SparseMatrix<_Scalar,_Options,_Index>& mat)
-{
-  cholmod_sparse res = viewAsCholmod(Ref<SparseMatrix<_Scalar,_Options,_Index> >(mat.const_cast_derived()));
-  return res;
-}
-
-template<typename _Scalar, int _Options, typename _Index>
-const cholmod_sparse viewAsCholmod(const SparseVector<_Scalar,_Options,_Index>& mat)
-{
-  cholmod_sparse res = viewAsCholmod(Ref<SparseMatrix<_Scalar,_Options,_Index> >(mat.const_cast_derived()));
-  return res;
-}
-
-/** Returns a view of the Eigen sparse matrix \a mat as Cholmod sparse matrix.
-  * The data are not copied but shared. */
-template<typename _Scalar, int _Options, typename _Index, unsigned int UpLo>
-cholmod_sparse viewAsCholmod(const SparseSelfAdjointView<const SparseMatrix<_Scalar,_Options,_Index>, UpLo>& mat)
-{
-  cholmod_sparse res = viewAsCholmod(Ref<SparseMatrix<_Scalar,_Options,_Index> >(mat.matrix().const_cast_derived()));
-
-  if(UpLo==Upper) res.stype =  1;
-  if(UpLo==Lower) res.stype = -1;
-  // swap stype for rowmajor matrices (only works for real matrices)
-  EIGEN_STATIC_ASSERT((_Options & RowMajorBit) == 0 || NumTraits<_Scalar>::IsComplex == 0, THIS_METHOD_IS_ONLY_FOR_COLUMN_MAJOR_MATRICES);
-  if(_Options & RowMajorBit) res.stype *=-1;
-
-  return res;
-}
-
-/** Returns a view of the Eigen \b dense matrix \a mat as Cholmod dense matrix.
-  * The data are not copied but shared. */
-template<typename Derived>
-cholmod_dense viewAsCholmod(MatrixBase<Derived>& mat)
-{
-  EIGEN_STATIC_ASSERT((internal::traits<Derived>::Flags&RowMajorBit)==0,THIS_METHOD_IS_ONLY_FOR_COLUMN_MAJOR_MATRICES);
-  typedef typename Derived::Scalar Scalar;
-
-  cholmod_dense res;
-  res.nrow   = mat.rows();
-  res.ncol   = mat.cols();
-  res.nzmax  = res.nrow * res.ncol;
-  res.d      = Derived::IsVectorAtCompileTime ? mat.derived().size() : mat.derived().outerStride();
-  res.x      = (void*)(mat.derived().data());
-  res.z      = 0;
-
-  internal::cholmod_configure_matrix<Scalar>::run(res);
-
-  return res;
-}
-
-/** Returns a view of the Cholmod sparse matrix \a cm as an Eigen sparse matrix.
-  * The data are not copied but shared. */
-template<typename Scalar, int Flags, typename StorageIndex>
-MappedSparseMatrix<Scalar,Flags,StorageIndex> viewAsEigen(cholmod_sparse& cm)
-{
-  return MappedSparseMatrix<Scalar,Flags,StorageIndex>
-         (cm.nrow, cm.ncol, static_cast<StorageIndex*>(cm.p)[cm.ncol],
-          static_cast<StorageIndex*>(cm.p), static_cast<StorageIndex*>(cm.i),static_cast<Scalar*>(cm.x) );
-}
-
-namespace internal {
-
-// template specializations for int and long that call the correct cholmod method
-
-#define EIGEN_CHOLMOD_SPECIALIZE0(ret, name) \
-    template<typename _StorageIndex> inline ret cm_ ## name       (cholmod_common &Common) { return cholmod_ ## name   (&Common); } \
-    template<>                       inline ret cm_ ## name<SuiteSparse_long> (cholmod_common &Common) { return cholmod_l_ ## name (&Common); }
-
-#define EIGEN_CHOLMOD_SPECIALIZE1(ret, name, t1, a1) \
-    template<typename _StorageIndex> inline ret cm_ ## name       (t1& a1, cholmod_common &Common) { return cholmod_ ## name   (&a1, &Common); } \
-    template<>                       inline ret cm_ ## name<SuiteSparse_long> (t1& a1, cholmod_common &Common) { return cholmod_l_ ## name (&a1, &Common); }
-
-EIGEN_CHOLMOD_SPECIALIZE0(int, start)
-EIGEN_CHOLMOD_SPECIALIZE0(int, finish)
-
-EIGEN_CHOLMOD_SPECIALIZE1(int, free_factor, cholmod_factor*, L)
-EIGEN_CHOLMOD_SPECIALIZE1(int, free_dense,  cholmod_dense*,  X)
-EIGEN_CHOLMOD_SPECIALIZE1(int, free_sparse, cholmod_sparse*, A)
-
-EIGEN_CHOLMOD_SPECIALIZE1(cholmod_factor*, analyze, cholmod_sparse, A)
-
-template<typename _StorageIndex> inline cholmod_dense*  cm_solve         (int sys, cholmod_factor& L, cholmod_dense&  B, cholmod_common &Common) { return cholmod_solve     (sys, &L, &B, &Common); }
-template<>                       inline cholmod_dense*  cm_solve<SuiteSparse_long>   (int sys, cholmod_factor& L, cholmod_dense&  B, cholmod_common &Common) { return cholmod_l_solve   (sys, &L, &B, &Common); }
-
-template<typename _StorageIndex> inline cholmod_sparse* cm_spsolve       (int sys, cholmod_factor& L, cholmod_sparse& B, cholmod_common &Common) { return cholmod_spsolve   (sys, &L, &B, &Common); }
-template<>                       inline cholmod_sparse* cm_spsolve<SuiteSparse_long> (int sys, cholmod_factor& L, cholmod_sparse& B, cholmod_common &Common) { return cholmod_l_spsolve (sys, &L, &B, &Common); }
-
-template<typename _StorageIndex>
-inline int  cm_factorize_p       (cholmod_sparse*  A, double beta[2], _StorageIndex* fset, std::size_t fsize, cholmod_factor* L, cholmod_common &Common) { return cholmod_factorize_p   (A, beta, fset, fsize, L, &Common); }
-template<>
-inline int  cm_factorize_p<SuiteSparse_long> (cholmod_sparse*  A, double beta[2], SuiteSparse_long* fset,          std::size_t fsize, cholmod_factor* L, cholmod_common &Common) { return cholmod_l_factorize_p (A, beta, fset, fsize, L, &Common); }
-
-#undef EIGEN_CHOLMOD_SPECIALIZE0
-#undef EIGEN_CHOLMOD_SPECIALIZE1
-
-}  // namespace internal
-
-
-enum CholmodMode {
-  CholmodAuto, CholmodSimplicialLLt, CholmodSupernodalLLt, CholmodLDLt
-};
-
-
-/** \ingroup CholmodSupport_Module
-  * \class CholmodBase
-  * \brief The base class for the direct Cholesky factorization of Cholmod
-  * \sa class CholmodSupernodalLLT, class CholmodSimplicialLDLT, class CholmodSimplicialLLT
-  */
-template<typename _MatrixType, int _UpLo, typename Derived>
-class CholmodBase : public SparseSolverBase<Derived>
-{
-  protected:
-    typedef SparseSolverBase<Derived> Base;
-    using Base::derived;
-    using Base::m_isInitialized;
-  public:
-    typedef _MatrixType MatrixType;
-    enum { UpLo = _UpLo };
-    typedef typename MatrixType::Scalar Scalar;
-    typedef typename MatrixType::RealScalar RealScalar;
-    typedef MatrixType CholMatrixType;
-    typedef typename MatrixType::StorageIndex StorageIndex;
-    enum {
-      ColsAtCompileTime = MatrixType::ColsAtCompileTime,
-      MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime
-    };
-
-  public:
-
-    CholmodBase()
-      : m_cholmodFactor(0), m_info(Success), m_factorizationIsOk(false), m_analysisIsOk(false)
-    {
-      EIGEN_STATIC_ASSERT((internal::is_same<double,RealScalar>::value), CHOLMOD_SUPPORTS_DOUBLE_PRECISION_ONLY);
-      m_shiftOffset[0] = m_shiftOffset[1] = 0.0;
-      internal::cm_start<StorageIndex>(m_cholmod);
-    }
-
-    explicit CholmodBase(const MatrixType& matrix)
-      : m_cholmodFactor(0), m_info(Success), m_factorizationIsOk(false), m_analysisIsOk(false)
-    {
-      EIGEN_STATIC_ASSERT((internal::is_same<double,RealScalar>::value), CHOLMOD_SUPPORTS_DOUBLE_PRECISION_ONLY);
-      m_shiftOffset[0] = m_shiftOffset[1] = 0.0;
-      internal::cm_start<StorageIndex>(m_cholmod);
-      compute(matrix);
-    }
-
-    ~CholmodBase()
-    {
-      if(m_cholmodFactor)
-        internal::cm_free_factor<StorageIndex>(m_cholmodFactor, m_cholmod);
-      internal::cm_finish<StorageIndex>(m_cholmod);
-    }
-
-    inline StorageIndex cols() const { return internal::convert_index<StorageIndex, Index>(m_cholmodFactor->n); }
-    inline StorageIndex rows() const { return internal::convert_index<StorageIndex, Index>(m_cholmodFactor->n); }
-
-    /** \brief Reports whether previous computation was successful.
-      *
-      * \returns \c Success if computation was successful,
-      *          \c NumericalIssue if the matrix.appears to be negative.
-      */
-    ComputationInfo info() const
-    {
-      eigen_assert(m_isInitialized && "Decomposition is not initialized.");
-      return m_info;
-    }
-
-    /** Computes the sparse Cholesky decomposition of \a matrix */
-    Derived& compute(const MatrixType& matrix)
-    {
-      analyzePattern(matrix);
-      factorize(matrix);
-      return derived();
-    }
-
-    /** Performs a symbolic decomposition on the sparsity pattern of \a matrix.
-      *
-      * This function is particularly useful when solving for several problems having the same structure.
-      *
-      * \sa factorize()
-      */
-    void analyzePattern(const MatrixType& matrix)
-    {
-      if(m_cholmodFactor)
-      {
-        internal::cm_free_factor<StorageIndex>(m_cholmodFactor, m_cholmod);
-        m_cholmodFactor = 0;
-      }
-      cholmod_sparse A = viewAsCholmod(matrix.template selfadjointView<UpLo>());
-      m_cholmodFactor = internal::cm_analyze<StorageIndex>(A, m_cholmod);
-
-      this->m_isInitialized = true;
-      this->m_info = Success;
-      m_analysisIsOk = true;
-      m_factorizationIsOk = false;
-    }
-
-    /** Performs a numeric decomposition of \a matrix
-      *
-      * The given matrix must have the same sparsity pattern as the matrix on which the symbolic decomposition has been performed.
-      *
-      * \sa analyzePattern()
-      */
-    void factorize(const MatrixType& matrix)
-    {
-      eigen_assert(m_analysisIsOk && "You must first call analyzePattern()");
-      cholmod_sparse A = viewAsCholmod(matrix.template selfadjointView<UpLo>());
-      internal::cm_factorize_p<StorageIndex>(&A, m_shiftOffset, 0, 0, m_cholmodFactor, m_cholmod);
-
-      // If the factorization failed, minor is the column at which it did. On success minor == n.
-      this->m_info = (m_cholmodFactor->minor == m_cholmodFactor->n ? Success : NumericalIssue);
-      m_factorizationIsOk = true;
-    }
-
-    /** Returns a reference to the Cholmod's configuration structure to get a full control over the performed operations.
-     *  See the Cholmod user guide for details. */
-    cholmod_common& cholmod() { return m_cholmod; }
-
-    #ifndef EIGEN_PARSED_BY_DOXYGEN
-    /** \internal */
-    template<typename Rhs,typename Dest>
-    void _solve_impl(const MatrixBase<Rhs> &b, MatrixBase<Dest> &dest) const
-    {
-      eigen_assert(m_factorizationIsOk && "The decomposition is not in a valid state for solving, you must first call either compute() or symbolic()/numeric()");
-      const Index size = m_cholmodFactor->n;
-      EIGEN_UNUSED_VARIABLE(size);
-      eigen_assert(size==b.rows());
-
-      // Cholmod needs column-major storage without inner-stride, which corresponds to the default behavior of Ref.
-      Ref<const Matrix<typename Rhs::Scalar,Dynamic,Dynamic,ColMajor> > b_ref(b.derived());
-
-      cholmod_dense b_cd = viewAsCholmod(b_ref);
-      cholmod_dense* x_cd = internal::cm_solve<StorageIndex>(CHOLMOD_A, *m_cholmodFactor, b_cd, m_cholmod);
-      if(!x_cd)
-      {
-        this->m_info = NumericalIssue;
-        return;
-      }
-      // TODO optimize this copy by swapping when possible (be careful with alignment, etc.)
-      // NOTE Actually, the copy can be avoided by calling cholmod_solve2 instead of cholmod_solve
-      dest = Matrix<Scalar,Dest::RowsAtCompileTime,Dest::ColsAtCompileTime>::Map(reinterpret_cast<Scalar*>(x_cd->x),b.rows(),b.cols());
-      internal::cm_free_dense<StorageIndex>(x_cd, m_cholmod);
-    }
-
-    /** \internal */
-    template<typename RhsDerived, typename DestDerived>
-    void _solve_impl(const SparseMatrixBase<RhsDerived> &b, SparseMatrixBase<DestDerived> &dest) const
-    {
-      eigen_assert(m_factorizationIsOk && "The decomposition is not in a valid state for solving, you must first call either compute() or symbolic()/numeric()");
-      const Index size = m_cholmodFactor->n;
-      EIGEN_UNUSED_VARIABLE(size);
-      eigen_assert(size==b.rows());
-
-      // note: cs stands for Cholmod Sparse
-      Ref<SparseMatrix<typename RhsDerived::Scalar,ColMajor,typename RhsDerived::StorageIndex> > b_ref(b.const_cast_derived());
-      cholmod_sparse b_cs = viewAsCholmod(b_ref);
-      cholmod_sparse* x_cs = internal::cm_spsolve<StorageIndex>(CHOLMOD_A, *m_cholmodFactor, b_cs, m_cholmod);
-      if(!x_cs)
-      {
-        this->m_info = NumericalIssue;
-        return;
-      }
-      // TODO optimize this copy by swapping when possible (be careful with alignment, etc.)
-      // NOTE cholmod_spsolve in fact just calls the dense solver for blocks of 4 columns at a time (similar to Eigen's sparse solver)
-      dest.derived() = viewAsEigen<typename DestDerived::Scalar,ColMajor,typename DestDerived::StorageIndex>(*x_cs);
-      internal::cm_free_sparse<StorageIndex>(x_cs, m_cholmod);
-    }
-    #endif // EIGEN_PARSED_BY_DOXYGEN
-
-
-    /** Sets the shift parameter that will be used to adjust the diagonal coefficients during the numerical factorization.
-      *
-      * During the numerical factorization, an offset term is added to the diagonal coefficients:\n
-      * \c d_ii = \a offset + \c d_ii
-      *
-      * The default is \a offset=0.
-      *
-      * \returns a reference to \c *this.
-      */
-    Derived& setShift(const RealScalar& offset)
-    {
-      m_shiftOffset[0] = double(offset);
-      return derived();
-    }
-
-    /** \returns the determinant of the underlying matrix from the current factorization */
-    Scalar determinant() const
-    {
-      using std::exp;
-      return exp(logDeterminant());
-    }
-
-    /** \returns the log determinant of the underlying matrix from the current factorization */
-    Scalar logDeterminant() const
-    {
-      using std::log;
-      using numext::real;
-      eigen_assert(m_factorizationIsOk && "The decomposition is not in a valid state for solving, you must first call either compute() or symbolic()/numeric()");
-
-      RealScalar logDet = 0;
-      Scalar *x = static_cast<Scalar*>(m_cholmodFactor->x);
-      if (m_cholmodFactor->is_super)
-      {
-        // Supernodal factorization stored as a packed list of dense column-major blocs,
-        // as described by the following structure:
-
-        // super[k] == index of the first column of the j-th super node
-        StorageIndex *super = static_cast<StorageIndex*>(m_cholmodFactor->super);
-        // pi[k] == offset to the description of row indices
-        StorageIndex *pi = static_cast<StorageIndex*>(m_cholmodFactor->pi);
-        // px[k] == offset to the respective dense block
-        StorageIndex *px = static_cast<StorageIndex*>(m_cholmodFactor->px);
-
-        Index nb_super_nodes = m_cholmodFactor->nsuper;
-        for (Index k=0; k < nb_super_nodes; ++k)
-        {
-          StorageIndex ncols = super[k + 1] - super[k];
-          StorageIndex nrows = pi[k + 1] - pi[k];
-
-          Map<const Array<Scalar,1,Dynamic>, 0, InnerStride<> > sk(x + px[k], ncols, InnerStride<>(nrows+1));
-          logDet += sk.real().log().sum();
-        }
-      }
-      else
-      {
-        // Simplicial factorization stored as standard CSC matrix.
-        StorageIndex *p = static_cast<StorageIndex*>(m_cholmodFactor->p);
-        Index size = m_cholmodFactor->n;
-        for (Index k=0; k<size; ++k)
-          logDet += log(real( x[p[k]] ));
-      }
-      if (m_cholmodFactor->is_ll)
-        logDet *= 2.0;
-      return logDet;
-    };
-
-    template<typename Stream>
-    void dumpMemory(Stream& /*s*/)
-    {}
-
-  protected:
-    mutable cholmod_common m_cholmod;
-    cholmod_factor* m_cholmodFactor;
-    double m_shiftOffset[2];
-    mutable ComputationInfo m_info;
-    int m_factorizationIsOk;
-    int m_analysisIsOk;
-};
-
-/** \ingroup CholmodSupport_Module
-  * \class CholmodSimplicialLLT
-  * \brief A simplicial direct Cholesky (LLT) factorization and solver based on Cholmod
-  *
-  * This class allows to solve for A.X = B sparse linear problems via a simplicial LL^T Cholesky factorization
-  * using the Cholmod library.
-  * This simplicial variant is equivalent to Eigen's built-in SimplicialLLT class. Therefore, it has little practical interest.
-  * The sparse matrix A must be selfadjoint and positive definite. The vectors or matrices
-  * X and B can be either dense or sparse.
-  *
-  * \tparam _MatrixType the type of the sparse matrix A, it must be a SparseMatrix<>
-  * \tparam _UpLo the triangular part that will be used for the computations. It can be Lower
-  *               or Upper. Default is Lower.
-  *
-  * \implsparsesolverconcept
-  *
-  * This class supports all kind of SparseMatrix<>: row or column major; upper, lower, or both; compressed or non compressed.
-  *
-  * \warning Only double precision real and complex scalar types are supported by Cholmod.
-  *
-  * \sa \ref TutorialSparseSolverConcept, class CholmodSupernodalLLT, class SimplicialLLT
-  */
-template<typename _MatrixType, int _UpLo = Lower>
-class CholmodSimplicialLLT : public CholmodBase<_MatrixType, _UpLo, CholmodSimplicialLLT<_MatrixType, _UpLo> >
-{
-    typedef CholmodBase<_MatrixType, _UpLo, CholmodSimplicialLLT> Base;
-    using Base::m_cholmod;
-
-  public:
-
-    typedef _MatrixType MatrixType;
-
-    CholmodSimplicialLLT() : Base() { init(); }
-
-    CholmodSimplicialLLT(const MatrixType& matrix) : Base()
-    {
-      init();
-      this->compute(matrix);
-    }
-
-    ~CholmodSimplicialLLT() {}
-  protected:
-    void init()
-    {
-      m_cholmod.final_asis = 0;
-      m_cholmod.supernodal = CHOLMOD_SIMPLICIAL;
-      m_cholmod.final_ll = 1;
-    }
-};
-
-
-/** \ingroup CholmodSupport_Module
-  * \class CholmodSimplicialLDLT
-  * \brief A simplicial direct Cholesky (LDLT) factorization and solver based on Cholmod
-  *
-  * This class allows to solve for A.X = B sparse linear problems via a simplicial LDL^T Cholesky factorization
-  * using the Cholmod library.
-  * This simplicial variant is equivalent to Eigen's built-in SimplicialLDLT class. Therefore, it has little practical interest.
-  * The sparse matrix A must be selfadjoint and positive definite. The vectors or matrices
-  * X and B can be either dense or sparse.
-  *
-  * \tparam _MatrixType the type of the sparse matrix A, it must be a SparseMatrix<>
-  * \tparam _UpLo the triangular part that will be used for the computations. It can be Lower
-  *               or Upper. Default is Lower.
-  *
-  * \implsparsesolverconcept
-  *
-  * This class supports all kind of SparseMatrix<>: row or column major; upper, lower, or both; compressed or non compressed.
-  *
-  * \warning Only double precision real and complex scalar types are supported by Cholmod.
-  *
-  * \sa \ref TutorialSparseSolverConcept, class CholmodSupernodalLLT, class SimplicialLDLT
-  */
-template<typename _MatrixType, int _UpLo = Lower>
-class CholmodSimplicialLDLT : public CholmodBase<_MatrixType, _UpLo, CholmodSimplicialLDLT<_MatrixType, _UpLo> >
-{
-    typedef CholmodBase<_MatrixType, _UpLo, CholmodSimplicialLDLT> Base;
-    using Base::m_cholmod;
-
-  public:
-
-    typedef _MatrixType MatrixType;
-
-    CholmodSimplicialLDLT() : Base() { init(); }
-
-    CholmodSimplicialLDLT(const MatrixType& matrix) : Base()
-    {
-      init();
-      this->compute(matrix);
-    }
-
-    ~CholmodSimplicialLDLT() {}
-  protected:
-    void init()
-    {
-      m_cholmod.final_asis = 1;
-      m_cholmod.supernodal = CHOLMOD_SIMPLICIAL;
-    }
-};
-
-/** \ingroup CholmodSupport_Module
-  * \class CholmodSupernodalLLT
-  * \brief A supernodal Cholesky (LLT) factorization and solver based on Cholmod
-  *
-  * This class allows to solve for A.X = B sparse linear problems via a supernodal LL^T Cholesky factorization
-  * using the Cholmod library.
-  * This supernodal variant performs best on dense enough problems, e.g., 3D FEM, or very high order 2D FEM.
-  * The sparse matrix A must be selfadjoint and positive definite. The vectors or matrices
-  * X and B can be either dense or sparse.
-  *
-  * \tparam _MatrixType the type of the sparse matrix A, it must be a SparseMatrix<>
-  * \tparam _UpLo the triangular part that will be used for the computations. It can be Lower
-  *               or Upper. Default is Lower.
-  *
-  * \implsparsesolverconcept
-  *
-  * This class supports all kind of SparseMatrix<>: row or column major; upper, lower, or both; compressed or non compressed.
-  *
-  * \warning Only double precision real and complex scalar types are supported by Cholmod.
-  *
-  * \sa \ref TutorialSparseSolverConcept
-  */
-template<typename _MatrixType, int _UpLo = Lower>
-class CholmodSupernodalLLT : public CholmodBase<_MatrixType, _UpLo, CholmodSupernodalLLT<_MatrixType, _UpLo> >
-{
-    typedef CholmodBase<_MatrixType, _UpLo, CholmodSupernodalLLT> Base;
-    using Base::m_cholmod;
-
-  public:
-
-    typedef _MatrixType MatrixType;
-
-    CholmodSupernodalLLT() : Base() { init(); }
-
-    CholmodSupernodalLLT(const MatrixType& matrix) : Base()
-    {
-      init();
-      this->compute(matrix);
-    }
-
-    ~CholmodSupernodalLLT() {}
-  protected:
-    void init()
-    {
-      m_cholmod.final_asis = 1;
-      m_cholmod.supernodal = CHOLMOD_SUPERNODAL;
-    }
-};
-
-/** \ingroup CholmodSupport_Module
-  * \class CholmodDecomposition
-  * \brief A general Cholesky factorization and solver based on Cholmod
-  *
-  * This class allows to solve for A.X = B sparse linear problems via a LL^T or LDL^T Cholesky factorization
-  * using the Cholmod library. The sparse matrix A must be selfadjoint and positive definite. The vectors or matrices
-  * X and B can be either dense or sparse.
-  *
-  * This variant permits to change the underlying Cholesky method at runtime.
-  * On the other hand, it does not provide access to the result of the factorization.
-  * The default is to let Cholmod automatically choose between a simplicial and supernodal factorization.
-  *
-  * \tparam _MatrixType the type of the sparse matrix A, it must be a SparseMatrix<>
-  * \tparam _UpLo the triangular part that will be used for the computations. It can be Lower
-  *               or Upper. Default is Lower.
-  *
-  * \implsparsesolverconcept
-  *
-  * This class supports all kind of SparseMatrix<>: row or column major; upper, lower, or both; compressed or non compressed.
-  *
-  * \warning Only double precision real and complex scalar types are supported by Cholmod.
-  *
-  * \sa \ref TutorialSparseSolverConcept
-  */
-template<typename _MatrixType, int _UpLo = Lower>
-class CholmodDecomposition : public CholmodBase<_MatrixType, _UpLo, CholmodDecomposition<_MatrixType, _UpLo> >
-{
-    typedef CholmodBase<_MatrixType, _UpLo, CholmodDecomposition> Base;
-    using Base::m_cholmod;
-
-  public:
-
-    typedef _MatrixType MatrixType;
-
-    CholmodDecomposition() : Base() { init(); }
-
-    CholmodDecomposition(const MatrixType& matrix) : Base()
-    {
-      init();
-      this->compute(matrix);
-    }
-
-    ~CholmodDecomposition() {}
-
-    void setMode(CholmodMode mode)
-    {
-      switch(mode)
-      {
-        case CholmodAuto:
-          m_cholmod.final_asis = 1;
-          m_cholmod.supernodal = CHOLMOD_AUTO;
-          break;
-        case CholmodSimplicialLLt:
-          m_cholmod.final_asis = 0;
-          m_cholmod.supernodal = CHOLMOD_SIMPLICIAL;
-          m_cholmod.final_ll = 1;
-          break;
-        case CholmodSupernodalLLt:
-          m_cholmod.final_asis = 1;
-          m_cholmod.supernodal = CHOLMOD_SUPERNODAL;
-          break;
-        case CholmodLDLt:
-          m_cholmod.final_asis = 1;
-          m_cholmod.supernodal = CHOLMOD_SIMPLICIAL;
-          break;
-        default:
-          break;
-      }
-    }
-  protected:
-    void init()
-    {
-      m_cholmod.final_asis = 1;
-      m_cholmod.supernodal = CHOLMOD_AUTO;
-    }
-};
-
-} // end namespace Eigen
-
-#endif // EIGEN_CHOLMODSUPPORT_H