sequenzo 0.1.18__cp311-cp311-win_amd64.whl → 0.1.20__cp311-cp311-win_amd64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of sequenzo might be problematic. Click here for more details.

Files changed (399) hide show
  1. sequenzo/__init__.py +39 -7
  2. sequenzo/big_data/clara/utils/get_weighted_diss.c +154 -154
  3. sequenzo/big_data/clara/utils/get_weighted_diss.cp311-win_amd64.pyd +0 -0
  4. sequenzo/clustering/KMedoids.py +39 -0
  5. sequenzo/clustering/clustering_c_code.cp311-win_amd64.pyd +0 -0
  6. sequenzo/clustering/hierarchical_clustering.py +108 -6
  7. sequenzo/define_sequence_data.py +10 -1
  8. sequenzo/dissimilarity_measures/c_code.cp311-win_amd64.pyd +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +2 -3
  10. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  11. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +154 -154
  12. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp311-win_amd64.pyd +0 -0
  13. sequenzo/dissimilarity_measures/utils/seqconc.c +154 -154
  14. sequenzo/dissimilarity_measures/utils/seqconc.cp311-win_amd64.pyd +0 -0
  15. sequenzo/dissimilarity_measures/utils/seqdss.c +154 -154
  16. sequenzo/dissimilarity_measures/utils/seqdss.cp311-win_amd64.pyd +0 -0
  17. sequenzo/dissimilarity_measures/utils/seqdur.c +154 -154
  18. sequenzo/dissimilarity_measures/utils/seqdur.cp311-win_amd64.pyd +0 -0
  19. sequenzo/dissimilarity_measures/utils/seqlength.c +154 -154
  20. sequenzo/dissimilarity_measures/utils/seqlength.cp311-win_amd64.pyd +0 -0
  21. sequenzo/multidomain/cat.py +0 -53
  22. sequenzo/multidomain/dat.py +11 -3
  23. sequenzo/multidomain/idcd.py +0 -3
  24. sequenzo/multidomain/linked_polyad.py +0 -1
  25. sequenzo/openmp_setup.py +233 -0
  26. sequenzo/visualization/plot_transition_matrix.py +21 -22
  27. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/METADATA +71 -10
  28. sequenzo-0.1.20.dist-info/RECORD +272 -0
  29. sequenzo/dissimilarity_measures/setup.py +0 -35
  30. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  31. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  32. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  33. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  34. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  35. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  36. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  37. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  38. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  39. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  40. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  41. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  42. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  43. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  44. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  45. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  46. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  47. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  48. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  49. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  50. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  51. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  52. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  53. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  54. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  55. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  56. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  57. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  58. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  59. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  60. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  61. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  62. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  63. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  64. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  65. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  66. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  67. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  68. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  69. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  70. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  71. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  72. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  73. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  74. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  75. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  76. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  77. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  78. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  79. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  80. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  81. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  82. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  83. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  84. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  85. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  86. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  87. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  88. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  89. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  90. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
  172. sequenzo/dissimilarity_measures/src/eigen/bench/BenchSparseUtil.h +0 -149
  173. sequenzo/dissimilarity_measures/src/eigen/bench/BenchTimer.h +0 -199
  174. sequenzo/dissimilarity_measures/src/eigen/bench/BenchUtil.h +0 -92
  175. sequenzo/dissimilarity_measures/src/eigen/bench/basicbenchmark.h +0 -63
  176. sequenzo/dissimilarity_measures/src/eigen/bench/btl/generic_bench/utils/utilities.h +0 -90
  177. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/blas.h +0 -675
  178. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/c_interface_base.h +0 -73
  179. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemm_common.h +0 -67
  180. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemv_common.h +0 -69
  181. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchsolver.h +0 -573
  182. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchstyle.h +0 -95
  183. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/benchmark.h +0 -49
  184. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/tensor_benchmarks.h +0 -597
  185. sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
  186. sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
  187. sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
  188. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
  189. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
  190. sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
  191. sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
  192. sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
  193. sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
  194. sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
  195. sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
  196. sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
  197. sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
  198. sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
  199. sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
  200. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
  201. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
  202. sequenzo/dissimilarity_measures/src/eigen/demos/mandelbrot/mandelbrot.h +0 -71
  203. sequenzo/dissimilarity_measures/src/eigen/demos/mix_eigen_and_c/binary_library.h +0 -71
  204. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/camera.h +0 -118
  205. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/gpuhelper.h +0 -207
  206. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/icosphere.h +0 -30
  207. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/quaternion_demo.h +0 -114
  208. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/trackball.h +0 -42
  209. sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
  210. sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
  211. sequenzo/dissimilarity_measures/src/eigen/test/AnnoyingScalar.h +0 -165
  212. sequenzo/dissimilarity_measures/src/eigen/test/MovableScalar.h +0 -35
  213. sequenzo/dissimilarity_measures/src/eigen/test/SafeScalar.h +0 -30
  214. sequenzo/dissimilarity_measures/src/eigen/test/bug1213.h +0 -8
  215. sequenzo/dissimilarity_measures/src/eigen/test/evaluator_common.h +0 -0
  216. sequenzo/dissimilarity_measures/src/eigen/test/gpu_common.h +0 -176
  217. sequenzo/dissimilarity_measures/src/eigen/test/main.h +0 -857
  218. sequenzo/dissimilarity_measures/src/eigen/test/packetmath_test_shared.h +0 -275
  219. sequenzo/dissimilarity_measures/src/eigen/test/product.h +0 -259
  220. sequenzo/dissimilarity_measures/src/eigen/test/random_without_cast_overflow.h +0 -152
  221. sequenzo/dissimilarity_measures/src/eigen/test/solverbase.h +0 -36
  222. sequenzo/dissimilarity_measures/src/eigen/test/sparse.h +0 -204
  223. sequenzo/dissimilarity_measures/src/eigen/test/sparse_solver.h +0 -699
  224. sequenzo/dissimilarity_measures/src/eigen/test/split_test_helper.h +0 -5994
  225. sequenzo/dissimilarity_measures/src/eigen/test/svd_common.h +0 -521
  226. sequenzo/dissimilarity_measures/src/eigen/test/svd_fill.h +0 -118
  227. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/Tensor.h +0 -554
  228. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorArgMax.h +0 -329
  229. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorAssign.h +0 -247
  230. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h +0 -1176
  231. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBlock.h +0 -1559
  232. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBroadcasting.h +0 -1093
  233. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h +0 -518
  234. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConcatenation.h +0 -377
  235. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContraction.h +0 -1023
  236. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionBlocking.h +0 -73
  237. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionCuda.h +0 -6
  238. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionGpu.h +0 -1413
  239. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionMapper.h +0 -575
  240. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionSycl.h +0 -1650
  241. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionThreadPool.h +0 -1679
  242. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConversion.h +0 -456
  243. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolution.h +0 -1132
  244. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolutionSycl.h +0 -544
  245. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCostModel.h +0 -214
  246. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCustomOp.h +0 -347
  247. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDevice.h +0 -137
  248. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceCuda.h +0 -6
  249. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceDefault.h +0 -104
  250. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceGpu.h +0 -389
  251. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceSycl.h +0 -1048
  252. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceThreadPool.h +0 -409
  253. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensionList.h +0 -236
  254. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensions.h +0 -490
  255. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvalTo.h +0 -236
  256. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvaluator.h +0 -983
  257. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExecutor.h +0 -703
  258. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExpr.h +0 -388
  259. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFFT.h +0 -669
  260. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFixedSize.h +0 -379
  261. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForcedEval.h +0 -237
  262. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h +0 -191
  263. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFunctors.h +0 -488
  264. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGenerator.h +0 -302
  265. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGlobalFunctions.h +0 -33
  266. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaDefines.h +0 -99
  267. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaUndefines.h +0 -44
  268. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIO.h +0 -79
  269. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorImagePatch.h +0 -603
  270. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIndexList.h +0 -738
  271. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInflation.h +0 -247
  272. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInitializer.h +0 -82
  273. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIntDiv.h +0 -263
  274. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorLayoutSwap.h +0 -216
  275. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMacros.h +0 -98
  276. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMap.h +0 -327
  277. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMeta.h +0 -311
  278. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMorphing.h +0 -1102
  279. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPadding.h +0 -708
  280. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPatch.h +0 -291
  281. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRandom.h +0 -322
  282. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReduction.h +0 -998
  283. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionCuda.h +0 -6
  284. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionGpu.h +0 -966
  285. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionSycl.h +0 -582
  286. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRef.h +0 -454
  287. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReverse.h +0 -465
  288. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScan.h +0 -528
  289. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScanSycl.h +0 -513
  290. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorShuffling.h +0 -471
  291. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStorage.h +0 -161
  292. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStriding.h +0 -346
  293. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTrace.h +0 -303
  294. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTraits.h +0 -264
  295. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorUInt128.h +0 -249
  296. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorVolumePatch.h +0 -629
  297. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/DynamicSymmetry.h +0 -293
  298. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/StaticSymmetry.h +0 -236
  299. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/Symmetry.h +0 -338
  300. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/util/TemplateGroupTheory.h +0 -669
  301. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/Barrier.h +0 -67
  302. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/EventCount.h +0 -249
  303. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/NonBlockingThreadPool.h +0 -486
  304. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/RunQueue.h +0 -236
  305. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadCancel.h +0 -23
  306. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadEnvironment.h +0 -40
  307. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadLocal.h +0 -301
  308. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadPoolInterface.h +0 -48
  309. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadYield.h +0 -20
  310. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Meta.h +0 -537
  311. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Workarounds.h +0 -88
  312. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/EmulateArray.h +0 -261
  313. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/MaxSizeVector.h +0 -158
  314. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffJacobian.h +0 -108
  315. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffScalar.h +0 -730
  316. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffVector.h +0 -220
  317. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/BVAlgorithms.h +0 -293
  318. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/KdBVH.h +0 -223
  319. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Eigenvalues/ArpackSelfAdjointEigenSolver.h +0 -790
  320. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerAngles.h +0 -355
  321. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerSystem.h +0 -305
  322. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_fftw_impl.h +0 -261
  323. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_kissfft_impl.h +0 -449
  324. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h +0 -187
  325. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/DGMRES.h +0 -511
  326. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/GMRES.h +0 -335
  327. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IDRS.h +0 -436
  328. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IncompleteLU.h +0 -90
  329. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IterationController.h +0 -154
  330. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/MINRES.h +0 -267
  331. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/Scaling.h +0 -193
  332. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h +0 -305
  333. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMcovar.h +0 -84
  334. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMonestep.h +0 -202
  335. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMpar.h +0 -160
  336. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMqrsolv.h +0 -188
  337. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  338. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  339. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  340. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  341. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  342. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  343. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  344. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  345. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  346. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  347. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  348. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  349. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  350. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  351. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  352. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  353. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  354. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  355. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  356. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  357. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  358. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  359. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  360. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  361. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  362. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  363. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  364. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  365. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  366. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  367. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  368. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  369. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  370. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  371. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  372. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  373. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  374. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  375. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  376. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  377. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  378. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  379. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  380. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  381. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  382. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  383. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  384. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  385. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  386. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  387. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  388. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  389. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  390. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  391. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  392. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  393. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  394. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  395. sequenzo/dissimilarity_measures/src/eigen/unsupported/test/matrix_functions.h +0 -67
  396. sequenzo-0.1.18.dist-info/RECORD +0 -638
  397. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/WHEEL +0 -0
  398. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/licenses/LICENSE +0 -0
  399. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/top_level.txt +0 -0
@@ -1,302 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2015 Benoit Steiner <benoit.steiner.goog@gmail.com>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_CXX11_TENSOR_TENSOR_GENERATOR_H
11
- #define EIGEN_CXX11_TENSOR_TENSOR_GENERATOR_H
12
-
13
- namespace Eigen {
14
-
15
- /** \class TensorGeneratorOp
16
- * \ingroup CXX11_Tensor_Module
17
- *
18
- * \brief Tensor generator class.
19
- *
20
- *
21
- */
22
- namespace internal {
23
- template<typename Generator, typename XprType>
24
- struct traits<TensorGeneratorOp<Generator, XprType> > : public traits<XprType>
25
- {
26
- typedef typename XprType::Scalar Scalar;
27
- typedef traits<XprType> XprTraits;
28
- typedef typename XprTraits::StorageKind StorageKind;
29
- typedef typename XprTraits::Index Index;
30
- typedef typename XprType::Nested Nested;
31
- typedef typename remove_reference<Nested>::type _Nested;
32
- static const int NumDimensions = XprTraits::NumDimensions;
33
- static const int Layout = XprTraits::Layout;
34
- typedef typename XprTraits::PointerType PointerType;
35
- };
36
-
37
- template<typename Generator, typename XprType>
38
- struct eval<TensorGeneratorOp<Generator, XprType>, Eigen::Dense>
39
- {
40
- typedef const TensorGeneratorOp<Generator, XprType>& type;
41
- };
42
-
43
- template<typename Generator, typename XprType>
44
- struct nested<TensorGeneratorOp<Generator, XprType>, 1, typename eval<TensorGeneratorOp<Generator, XprType> >::type>
45
- {
46
- typedef TensorGeneratorOp<Generator, XprType> type;
47
- };
48
-
49
- } // end namespace internal
50
-
51
-
52
-
53
- template<typename Generator, typename XprType>
54
- class TensorGeneratorOp : public TensorBase<TensorGeneratorOp<Generator, XprType>, ReadOnlyAccessors>
55
- {
56
- public:
57
- typedef typename Eigen::internal::traits<TensorGeneratorOp>::Scalar Scalar;
58
- typedef typename Eigen::NumTraits<Scalar>::Real RealScalar;
59
- typedef typename XprType::CoeffReturnType CoeffReturnType;
60
- typedef typename Eigen::internal::nested<TensorGeneratorOp>::type Nested;
61
- typedef typename Eigen::internal::traits<TensorGeneratorOp>::StorageKind StorageKind;
62
- typedef typename Eigen::internal::traits<TensorGeneratorOp>::Index Index;
63
-
64
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorGeneratorOp(const XprType& expr, const Generator& generator)
65
- : m_xpr(expr), m_generator(generator) {}
66
-
67
- EIGEN_DEVICE_FUNC
68
- const Generator& generator() const { return m_generator; }
69
-
70
- EIGEN_DEVICE_FUNC
71
- const typename internal::remove_all<typename XprType::Nested>::type&
72
- expression() const { return m_xpr; }
73
-
74
- protected:
75
- typename XprType::Nested m_xpr;
76
- const Generator m_generator;
77
- };
78
-
79
-
80
- // Eval as rvalue
81
- template<typename Generator, typename ArgType, typename Device>
82
- struct TensorEvaluator<const TensorGeneratorOp<Generator, ArgType>, Device>
83
- {
84
- typedef TensorGeneratorOp<Generator, ArgType> XprType;
85
- typedef typename XprType::Index Index;
86
- typedef typename TensorEvaluator<ArgType, Device>::Dimensions Dimensions;
87
- static const int NumDims = internal::array_size<Dimensions>::value;
88
- typedef typename XprType::Scalar Scalar;
89
- typedef typename XprType::CoeffReturnType CoeffReturnType;
90
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
91
- typedef StorageMemory<CoeffReturnType, Device> Storage;
92
- typedef typename Storage::Type EvaluatorPointerType;
93
- enum {
94
- IsAligned = false,
95
- PacketAccess = (PacketType<CoeffReturnType, Device>::size > 1),
96
- BlockAccess = true,
97
- PreferBlockAccess = true,
98
- Layout = TensorEvaluator<ArgType, Device>::Layout,
99
- CoordAccess = false, // to be implemented
100
- RawAccess = false
101
- };
102
-
103
- typedef internal::TensorIntDivisor<Index> IndexDivisor;
104
-
105
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
106
- typedef internal::TensorBlockDescriptor<NumDims, Index> TensorBlockDesc;
107
- typedef internal::TensorBlockScratchAllocator<Device> TensorBlockScratch;
108
-
109
- typedef typename internal::TensorMaterializedBlock<CoeffReturnType, NumDims,
110
- Layout, Index>
111
- TensorBlock;
112
- //===--------------------------------------------------------------------===//
113
-
114
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
115
- : m_device(device), m_generator(op.generator())
116
- {
117
- TensorEvaluator<ArgType, Device> argImpl(op.expression(), device);
118
- m_dimensions = argImpl.dimensions();
119
-
120
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
121
- m_strides[0] = 1;
122
- EIGEN_UNROLL_LOOP
123
- for (int i = 1; i < NumDims; ++i) {
124
- m_strides[i] = m_strides[i - 1] * m_dimensions[i - 1];
125
- if (m_strides[i] != 0) m_fast_strides[i] = IndexDivisor(m_strides[i]);
126
- }
127
- } else {
128
- m_strides[NumDims - 1] = 1;
129
- EIGEN_UNROLL_LOOP
130
- for (int i = NumDims - 2; i >= 0; --i) {
131
- m_strides[i] = m_strides[i + 1] * m_dimensions[i + 1];
132
- if (m_strides[i] != 0) m_fast_strides[i] = IndexDivisor(m_strides[i]);
133
- }
134
- }
135
- }
136
-
137
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const { return m_dimensions; }
138
-
139
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType /*data*/) {
140
- return true;
141
- }
142
- EIGEN_STRONG_INLINE void cleanup() {
143
- }
144
-
145
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const
146
- {
147
- array<Index, NumDims> coords;
148
- extract_coordinates(index, coords);
149
- return m_generator(coords);
150
- }
151
-
152
- template<int LoadMode>
153
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packet(Index index) const
154
- {
155
- const int packetSize = PacketType<CoeffReturnType, Device>::size;
156
- EIGEN_STATIC_ASSERT((packetSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
157
- eigen_assert(index+packetSize-1 < dimensions().TotalSize());
158
-
159
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[packetSize];
160
- for (int i = 0; i < packetSize; ++i) {
161
- values[i] = coeff(index+i);
162
- }
163
- PacketReturnType rslt = internal::pload<PacketReturnType>(values);
164
- return rslt;
165
- }
166
-
167
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
168
- internal::TensorBlockResourceRequirements getResourceRequirements() const {
169
- const size_t target_size = m_device.firstLevelCacheSize();
170
- // TODO(ezhulenev): Generator should have a cost.
171
- return internal::TensorBlockResourceRequirements::skewed<Scalar>(
172
- target_size);
173
- }
174
-
175
- struct BlockIteratorState {
176
- Index stride;
177
- Index span;
178
- Index size;
179
- Index count;
180
- };
181
-
182
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorBlock
183
- block(TensorBlockDesc& desc, TensorBlockScratch& scratch,
184
- bool /*root_of_expr_ast*/ = false) const {
185
- static const bool is_col_major =
186
- static_cast<int>(Layout) == static_cast<int>(ColMajor);
187
-
188
- // Compute spatial coordinates for the first block element.
189
- array<Index, NumDims> coords;
190
- extract_coordinates(desc.offset(), coords);
191
- array<Index, NumDims> initial_coords = coords;
192
-
193
- // Offset in the output block buffer.
194
- Index offset = 0;
195
-
196
- // Initialize output block iterator state. Dimension in this array are
197
- // always in inner_most -> outer_most order (col major layout).
198
- array<BlockIteratorState, NumDims> it;
199
- for (int i = 0; i < NumDims; ++i) {
200
- const int dim = is_col_major ? i : NumDims - 1 - i;
201
- it[i].size = desc.dimension(dim);
202
- it[i].stride = i == 0 ? 1 : (it[i - 1].size * it[i - 1].stride);
203
- it[i].span = it[i].stride * (it[i].size - 1);
204
- it[i].count = 0;
205
- }
206
- eigen_assert(it[0].stride == 1);
207
-
208
- // Prepare storage for the materialized generator result.
209
- const typename TensorBlock::Storage block_storage =
210
- TensorBlock::prepareStorage(desc, scratch);
211
-
212
- CoeffReturnType* block_buffer = block_storage.data();
213
-
214
- static const int packet_size = PacketType<CoeffReturnType, Device>::size;
215
-
216
- static const int inner_dim = is_col_major ? 0 : NumDims - 1;
217
- const Index inner_dim_size = it[0].size;
218
- const Index inner_dim_vectorized = inner_dim_size - packet_size;
219
-
220
- while (it[NumDims - 1].count < it[NumDims - 1].size) {
221
- Index i = 0;
222
- // Generate data for the vectorized part of the inner-most dimension.
223
- for (; i <= inner_dim_vectorized; i += packet_size) {
224
- for (Index j = 0; j < packet_size; ++j) {
225
- array<Index, NumDims> j_coords = coords; // Break loop dependence.
226
- j_coords[inner_dim] += j;
227
- *(block_buffer + offset + i + j) = m_generator(j_coords);
228
- }
229
- coords[inner_dim] += packet_size;
230
- }
231
- // Finalize non-vectorized part of the inner-most dimension.
232
- for (; i < inner_dim_size; ++i) {
233
- *(block_buffer + offset + i) = m_generator(coords);
234
- coords[inner_dim]++;
235
- }
236
- coords[inner_dim] = initial_coords[inner_dim];
237
-
238
- // For the 1d tensor we need to generate only one inner-most dimension.
239
- if (NumDims == 1) break;
240
-
241
- // Update offset.
242
- for (i = 1; i < NumDims; ++i) {
243
- if (++it[i].count < it[i].size) {
244
- offset += it[i].stride;
245
- coords[is_col_major ? i : NumDims - 1 - i]++;
246
- break;
247
- }
248
- if (i != NumDims - 1) it[i].count = 0;
249
- coords[is_col_major ? i : NumDims - 1 - i] =
250
- initial_coords[is_col_major ? i : NumDims - 1 - i];
251
- offset -= it[i].span;
252
- }
253
- }
254
-
255
- return block_storage.AsTensorMaterializedBlock();
256
- }
257
-
258
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost
259
- costPerCoeff(bool) const {
260
- // TODO(rmlarsen): This is just a placeholder. Define interface to make
261
- // generators return their cost.
262
- return TensorOpCost(0, 0, TensorOpCost::AddCost<Scalar>() +
263
- TensorOpCost::MulCost<Scalar>());
264
- }
265
-
266
- EIGEN_DEVICE_FUNC EvaluatorPointerType data() const { return NULL; }
267
-
268
- #ifdef EIGEN_USE_SYCL
269
- // binding placeholder accessors to a command group handler for SYCL
270
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler&) const {}
271
- #endif
272
-
273
- protected:
274
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
275
- void extract_coordinates(Index index, array<Index, NumDims>& coords) const {
276
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
277
- for (int i = NumDims - 1; i > 0; --i) {
278
- const Index idx = index / m_fast_strides[i];
279
- index -= idx * m_strides[i];
280
- coords[i] = idx;
281
- }
282
- coords[0] = index;
283
- } else {
284
- for (int i = 0; i < NumDims - 1; ++i) {
285
- const Index idx = index / m_fast_strides[i];
286
- index -= idx * m_strides[i];
287
- coords[i] = idx;
288
- }
289
- coords[NumDims-1] = index;
290
- }
291
- }
292
-
293
- const Device EIGEN_DEVICE_REF m_device;
294
- Dimensions m_dimensions;
295
- array<Index, NumDims> m_strides;
296
- array<IndexDivisor, NumDims> m_fast_strides;
297
- Generator m_generator;
298
- };
299
-
300
- } // end namespace Eigen
301
-
302
- #endif // EIGEN_CXX11_TENSOR_TENSOR_GENERATOR_H
@@ -1,33 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2016 Eugene Brevdo <ebrevdo@gmail.com>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_CXX11_TENSOR_TENSOR_GLOBAL_FUNCTIONS_H
11
- #define EIGEN_CXX11_TENSOR_TENSOR_GLOBAL_FUNCTIONS_H
12
-
13
- namespace Eigen {
14
-
15
- /** \cpp11 \returns an expression of the coefficient-wise betainc(\a x, \a a, \a b) to the given tensors.
16
- *
17
- * This function computes the regularized incomplete beta function (integral).
18
- *
19
- */
20
- template <typename ADerived, typename BDerived, typename XDerived>
21
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const
22
- TensorCwiseTernaryOp<internal::scalar_betainc_op<typename XDerived::Scalar>,
23
- const ADerived, const BDerived, const XDerived>
24
- betainc(const ADerived& a, const BDerived& b, const XDerived& x) {
25
- return TensorCwiseTernaryOp<
26
- internal::scalar_betainc_op<typename XDerived::Scalar>, const ADerived,
27
- const BDerived, const XDerived>(
28
- a, b, x, internal::scalar_betainc_op<typename XDerived::Scalar>());
29
- }
30
-
31
- } // end namespace Eigen
32
-
33
- #endif // EIGEN_CXX11_TENSOR_TENSOR_GLOBAL_FUNCTIONS_H
@@ -1,99 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
5
- // Copyright (C) 2018 Deven Desai <deven.desai.amd@gmail.com>
6
- //
7
- // This Source Code Form is subject to the terms of the Mozilla
8
- // Public License v. 2.0. If a copy of the MPL was not distributed
9
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
-
11
- #if defined(EIGEN_USE_GPU) && !defined(EIGEN_CXX11_TENSOR_GPU_HIP_CUDA_DEFINES_H)
12
- #define EIGEN_CXX11_TENSOR_GPU_HIP_CUDA_DEFINES_H
13
-
14
- // Note that we are using EIGEN_USE_HIP here instead of EIGEN_HIPCC...this is by design
15
- // There is code in the Tensorflow codebase that will define EIGEN_USE_GPU, but
16
- // for some reason gets sent to the gcc/host compiler instead of the gpu/nvcc/hipcc compiler
17
- // When compiling such files, gcc will end up trying to pick up the CUDA headers by
18
- // default (see the code within "unsupported/Eigen/CXX11/Tensor" that is guarded by EIGEN_USE_GPU)
19
- // This will obviously not work when trying to compile tensorflow on a system with no CUDA
20
- // To work around this issue for HIP systems (and leave the default behaviour intact), the
21
- // HIP tensorflow build defines EIGEN_USE_HIP when compiling all source files, and
22
- // "unsupported/Eigen/CXX11/Tensor" has been updated to use HIP header when EIGEN_USE_HIP is
23
- // defined. In continuation of that requirement, the guard here needs to be EIGEN_USE_HIP as well
24
-
25
- #if defined(EIGEN_USE_HIP)
26
-
27
- #define gpuStream_t hipStream_t
28
- #define gpuDeviceProp_t hipDeviceProp_t
29
- #define gpuError_t hipError_t
30
- #define gpuSuccess hipSuccess
31
- #define gpuErrorNotReady hipErrorNotReady
32
- #define gpuGetDeviceCount hipGetDeviceCount
33
- #define gpuGetLastError hipGetLastError
34
- #define gpuPeekAtLastError hipPeekAtLastError
35
- #define gpuGetErrorName hipGetErrorName
36
- #define gpuGetErrorString hipGetErrorString
37
- #define gpuGetDeviceProperties hipGetDeviceProperties
38
- #define gpuStreamDefault hipStreamDefault
39
- #define gpuGetDevice hipGetDevice
40
- #define gpuSetDevice hipSetDevice
41
- #define gpuMalloc hipMalloc
42
- #define gpuFree hipFree
43
- #define gpuMemsetAsync hipMemsetAsync
44
- #define gpuMemcpyAsync hipMemcpyAsync
45
- #define gpuMemcpyDeviceToDevice hipMemcpyDeviceToDevice
46
- #define gpuMemcpyDeviceToHost hipMemcpyDeviceToHost
47
- #define gpuMemcpyHostToDevice hipMemcpyHostToDevice
48
- #define gpuStreamQuery hipStreamQuery
49
- #define gpuSharedMemConfig hipSharedMemConfig
50
- #define gpuDeviceSetSharedMemConfig hipDeviceSetSharedMemConfig
51
- #define gpuStreamSynchronize hipStreamSynchronize
52
- #define gpuDeviceSynchronize hipDeviceSynchronize
53
- #define gpuMemcpy hipMemcpy
54
-
55
- #else
56
-
57
- #define gpuStream_t cudaStream_t
58
- #define gpuDeviceProp_t cudaDeviceProp
59
- #define gpuError_t cudaError_t
60
- #define gpuSuccess cudaSuccess
61
- #define gpuErrorNotReady cudaErrorNotReady
62
- #define gpuGetDeviceCount cudaGetDeviceCount
63
- #define gpuGetLastError cudaGetLastError
64
- #define gpuPeekAtLastError cudaPeekAtLastError
65
- #define gpuGetErrorName cudaGetErrorName
66
- #define gpuGetErrorString cudaGetErrorString
67
- #define gpuGetDeviceProperties cudaGetDeviceProperties
68
- #define gpuStreamDefault cudaStreamDefault
69
- #define gpuGetDevice cudaGetDevice
70
- #define gpuSetDevice cudaSetDevice
71
- #define gpuMalloc cudaMalloc
72
- #define gpuFree cudaFree
73
- #define gpuMemsetAsync cudaMemsetAsync
74
- #define gpuMemcpyAsync cudaMemcpyAsync
75
- #define gpuMemcpyDeviceToDevice cudaMemcpyDeviceToDevice
76
- #define gpuMemcpyDeviceToHost cudaMemcpyDeviceToHost
77
- #define gpuMemcpyHostToDevice cudaMemcpyHostToDevice
78
- #define gpuStreamQuery cudaStreamQuery
79
- #define gpuSharedMemConfig cudaSharedMemConfig
80
- #define gpuDeviceSetSharedMemConfig cudaDeviceSetSharedMemConfig
81
- #define gpuStreamSynchronize cudaStreamSynchronize
82
- #define gpuDeviceSynchronize cudaDeviceSynchronize
83
- #define gpuMemcpy cudaMemcpy
84
-
85
- #endif
86
-
87
- // gpu_assert can be overridden
88
- #ifndef gpu_assert
89
-
90
- #if defined(EIGEN_HIP_DEVICE_COMPILE)
91
- // HIPCC do not support the use of assert on the GPU side.
92
- #define gpu_assert(COND)
93
- #else
94
- #define gpu_assert(COND) assert(COND)
95
- #endif
96
-
97
- #endif // gpu_assert
98
-
99
- #endif // EIGEN_CXX11_TENSOR_GPU_HIP_CUDA_DEFINES_H
@@ -1,44 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
5
- // Copyright (C) 2018 Deven Desai <deven.desai.amd@gmail.com>
6
- //
7
- // This Source Code Form is subject to the terms of the Mozilla
8
- // Public License v. 2.0. If a copy of the MPL was not distributed
9
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
-
11
- #if defined(EIGEN_CXX11_TENSOR_GPU_HIP_CUDA_DEFINES_H)
12
-
13
- #ifndef EIGEN_PERMANENTLY_ENABLE_GPU_HIP_CUDA_DEFINES
14
-
15
- #undef gpuStream_t
16
- #undef gpuDeviceProp_t
17
- #undef gpuError_t
18
- #undef gpuSuccess
19
- #undef gpuErrorNotReady
20
- #undef gpuGetDeviceCount
21
- #undef gpuGetErrorString
22
- #undef gpuGetDeviceProperties
23
- #undef gpuStreamDefault
24
- #undef gpuGetDevice
25
- #undef gpuSetDevice
26
- #undef gpuMalloc
27
- #undef gpuFree
28
- #undef gpuMemsetAsync
29
- #undef gpuMemcpyAsync
30
- #undef gpuMemcpyDeviceToDevice
31
- #undef gpuMemcpyDeviceToHost
32
- #undef gpuMemcpyHostToDevice
33
- #undef gpuStreamQuery
34
- #undef gpuSharedMemConfig
35
- #undef gpuDeviceSetSharedMemConfig
36
- #undef gpuStreamSynchronize
37
- #undef gpuDeviceSynchronize
38
- #undef gpuMemcpy
39
-
40
- #endif // EIGEN_PERMANENTLY_ENABLE_GPU_HIP_CUDA_DEFINES
41
-
42
- #undef EIGEN_CXX11_TENSOR_GPU_HIP_CUDA_DEFINES_H
43
-
44
- #endif // EIGEN_CXX11_TENSOR_GPU_HIP_CUDA_DEFINES_H
@@ -1,79 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_CXX11_TENSOR_TENSOR_IO_H
11
- #define EIGEN_CXX11_TENSOR_TENSOR_IO_H
12
-
13
- namespace Eigen {
14
-
15
- namespace internal {
16
-
17
- // Print the tensor as a 2d matrix
18
- template <typename Tensor, int Rank>
19
- struct TensorPrinter {
20
- static void run (std::ostream& os, const Tensor& tensor) {
21
- typedef typename internal::remove_const<typename Tensor::Scalar>::type Scalar;
22
- typedef typename Tensor::Index Index;
23
- const Index total_size = internal::array_prod(tensor.dimensions());
24
- if (total_size > 0) {
25
- const Index first_dim = Eigen::internal::array_get<0>(tensor.dimensions());
26
- static const int layout = Tensor::Layout;
27
- Map<const Array<Scalar, Dynamic, Dynamic, layout> > matrix(const_cast<Scalar*>(tensor.data()), first_dim, total_size/first_dim);
28
- os << matrix;
29
- }
30
- }
31
- };
32
-
33
-
34
- // Print the tensor as a vector
35
- template <typename Tensor>
36
- struct TensorPrinter<Tensor, 1> {
37
- static void run (std::ostream& os, const Tensor& tensor) {
38
- typedef typename internal::remove_const<typename Tensor::Scalar>::type Scalar;
39
- typedef typename Tensor::Index Index;
40
- const Index total_size = internal::array_prod(tensor.dimensions());
41
- if (total_size > 0) {
42
- Map<const Array<Scalar, Dynamic, 1> > array(const_cast<Scalar*>(tensor.data()), total_size);
43
- os << array;
44
- }
45
- }
46
- };
47
-
48
-
49
- // Print the tensor as a scalar
50
- template <typename Tensor>
51
- struct TensorPrinter<Tensor, 0> {
52
- static void run (std::ostream& os, const Tensor& tensor) {
53
- os << tensor.coeff(0);
54
- }
55
- };
56
- }
57
-
58
- template <typename T>
59
- std::ostream& operator << (std::ostream& os, const TensorBase<T, ReadOnlyAccessors>& expr) {
60
- typedef TensorEvaluator<const TensorForcedEvalOp<const T>, DefaultDevice> Evaluator;
61
- typedef typename Evaluator::Dimensions Dimensions;
62
-
63
- // Evaluate the expression if needed
64
- TensorForcedEvalOp<const T> eval = expr.eval();
65
- Evaluator tensor(eval, DefaultDevice());
66
- tensor.evalSubExprsIfNeeded(NULL);
67
-
68
- // Print the result
69
- static const int rank = internal::array_size<Dimensions>::value;
70
- internal::TensorPrinter<Evaluator, rank>::run(os, tensor);
71
-
72
- // Cleanup.
73
- tensor.cleanup();
74
- return os;
75
- }
76
-
77
- } // end namespace Eigen
78
-
79
- #endif // EIGEN_CXX11_TENSOR_TENSOR_IO_H