sequenzo 0.1.18__cp311-cp311-win_amd64.whl → 0.1.20__cp311-cp311-win_amd64.whl

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  1. sequenzo/__init__.py +39 -7
  2. sequenzo/big_data/clara/utils/get_weighted_diss.c +154 -154
  3. sequenzo/big_data/clara/utils/get_weighted_diss.cp311-win_amd64.pyd +0 -0
  4. sequenzo/clustering/KMedoids.py +39 -0
  5. sequenzo/clustering/clustering_c_code.cp311-win_amd64.pyd +0 -0
  6. sequenzo/clustering/hierarchical_clustering.py +108 -6
  7. sequenzo/define_sequence_data.py +10 -1
  8. sequenzo/dissimilarity_measures/c_code.cp311-win_amd64.pyd +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +2 -3
  10. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  11. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +154 -154
  12. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp311-win_amd64.pyd +0 -0
  13. sequenzo/dissimilarity_measures/utils/seqconc.c +154 -154
  14. sequenzo/dissimilarity_measures/utils/seqconc.cp311-win_amd64.pyd +0 -0
  15. sequenzo/dissimilarity_measures/utils/seqdss.c +154 -154
  16. sequenzo/dissimilarity_measures/utils/seqdss.cp311-win_amd64.pyd +0 -0
  17. sequenzo/dissimilarity_measures/utils/seqdur.c +154 -154
  18. sequenzo/dissimilarity_measures/utils/seqdur.cp311-win_amd64.pyd +0 -0
  19. sequenzo/dissimilarity_measures/utils/seqlength.c +154 -154
  20. sequenzo/dissimilarity_measures/utils/seqlength.cp311-win_amd64.pyd +0 -0
  21. sequenzo/multidomain/cat.py +0 -53
  22. sequenzo/multidomain/dat.py +11 -3
  23. sequenzo/multidomain/idcd.py +0 -3
  24. sequenzo/multidomain/linked_polyad.py +0 -1
  25. sequenzo/openmp_setup.py +233 -0
  26. sequenzo/visualization/plot_transition_matrix.py +21 -22
  27. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/METADATA +71 -10
  28. sequenzo-0.1.20.dist-info/RECORD +272 -0
  29. sequenzo/dissimilarity_measures/setup.py +0 -35
  30. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  31. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  32. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  33. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  34. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  35. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  36. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  37. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  38. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  39. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  40. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  41. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  42. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  43. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  44. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  45. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  46. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  47. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  48. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  49. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  50. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  51. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  52. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  53. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  54. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  55. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  56. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  57. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  58. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  59. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  60. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  61. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  62. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  63. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  64. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  65. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  66. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  67. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  68. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  69. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  70. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  71. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  72. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  73. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  74. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  75. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  76. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  77. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  78. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  79. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  80. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  81. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  82. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  83. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  84. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  85. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  86. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  87. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  88. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  89. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  90. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
  172. sequenzo/dissimilarity_measures/src/eigen/bench/BenchSparseUtil.h +0 -149
  173. sequenzo/dissimilarity_measures/src/eigen/bench/BenchTimer.h +0 -199
  174. sequenzo/dissimilarity_measures/src/eigen/bench/BenchUtil.h +0 -92
  175. sequenzo/dissimilarity_measures/src/eigen/bench/basicbenchmark.h +0 -63
  176. sequenzo/dissimilarity_measures/src/eigen/bench/btl/generic_bench/utils/utilities.h +0 -90
  177. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/blas.h +0 -675
  178. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/c_interface_base.h +0 -73
  179. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemm_common.h +0 -67
  180. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemv_common.h +0 -69
  181. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchsolver.h +0 -573
  182. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchstyle.h +0 -95
  183. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/benchmark.h +0 -49
  184. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/tensor_benchmarks.h +0 -597
  185. sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
  186. sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
  187. sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
  188. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
  189. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
  190. sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
  191. sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
  192. sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
  193. sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
  194. sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
  195. sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
  196. sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
  197. sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
  198. sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
  199. sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
  200. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
  201. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
  202. sequenzo/dissimilarity_measures/src/eigen/demos/mandelbrot/mandelbrot.h +0 -71
  203. sequenzo/dissimilarity_measures/src/eigen/demos/mix_eigen_and_c/binary_library.h +0 -71
  204. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/camera.h +0 -118
  205. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/gpuhelper.h +0 -207
  206. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/icosphere.h +0 -30
  207. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/quaternion_demo.h +0 -114
  208. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/trackball.h +0 -42
  209. sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
  210. sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
  211. sequenzo/dissimilarity_measures/src/eigen/test/AnnoyingScalar.h +0 -165
  212. sequenzo/dissimilarity_measures/src/eigen/test/MovableScalar.h +0 -35
  213. sequenzo/dissimilarity_measures/src/eigen/test/SafeScalar.h +0 -30
  214. sequenzo/dissimilarity_measures/src/eigen/test/bug1213.h +0 -8
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  398. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/licenses/LICENSE +0 -0
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@@ -1,518 +0,0 @@
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- // This file is part of Eigen, a lightweight C++ template library
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- // for linear algebra.
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- //
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- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
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- //
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- // This Source Code Form is subject to the terms of the Mozilla
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- // Public License v. 2.0. If a copy of the MPL was not distributed
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- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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-
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- #ifndef EIGEN_CXX11_TENSOR_TENSOR_CHIPPING_H
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- #define EIGEN_CXX11_TENSOR_TENSOR_CHIPPING_H
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-
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- namespace Eigen {
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-
15
- /** \class TensorKChippingReshaping
16
- * \ingroup CXX11_Tensor_Module
17
- *
18
- * \brief A chip is a thin slice, corresponding to a column or a row in a 2-d tensor.
19
- *
20
- *
21
- */
22
-
23
- namespace internal {
24
- template<DenseIndex DimId, typename XprType>
25
- struct traits<TensorChippingOp<DimId, XprType> > : public traits<XprType>
26
- {
27
- typedef typename XprType::Scalar Scalar;
28
- typedef traits<XprType> XprTraits;
29
- typedef typename XprTraits::StorageKind StorageKind;
30
- typedef typename XprTraits::Index Index;
31
- typedef typename XprType::Nested Nested;
32
- typedef typename remove_reference<Nested>::type _Nested;
33
- static const int NumDimensions = XprTraits::NumDimensions - 1;
34
- static const int Layout = XprTraits::Layout;
35
- typedef typename XprTraits::PointerType PointerType;
36
- };
37
-
38
- template<DenseIndex DimId, typename XprType>
39
- struct eval<TensorChippingOp<DimId, XprType>, Eigen::Dense>
40
- {
41
- typedef const TensorChippingOp<DimId, XprType> EIGEN_DEVICE_REF type;
42
- };
43
-
44
- template<DenseIndex DimId, typename XprType>
45
- struct nested<TensorChippingOp<DimId, XprType>, 1, typename eval<TensorChippingOp<DimId, XprType> >::type>
46
- {
47
- typedef TensorChippingOp<DimId, XprType> type;
48
- };
49
-
50
- template <DenseIndex DimId>
51
- struct DimensionId
52
- {
53
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE DimensionId(DenseIndex dim) {
54
- EIGEN_UNUSED_VARIABLE(dim);
55
- eigen_assert(dim == DimId);
56
- }
57
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE DenseIndex actualDim() const {
58
- return DimId;
59
- }
60
- };
61
- template <>
62
- struct DimensionId<Dynamic>
63
- {
64
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE DimensionId(DenseIndex dim) : actual_dim(dim) {
65
- eigen_assert(dim >= 0);
66
- }
67
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE DenseIndex actualDim() const {
68
- return actual_dim;
69
- }
70
- private:
71
- const DenseIndex actual_dim;
72
- };
73
-
74
-
75
- } // end namespace internal
76
-
77
-
78
-
79
- template<DenseIndex DimId, typename XprType>
80
- class TensorChippingOp : public TensorBase<TensorChippingOp<DimId, XprType> >
81
- {
82
- public:
83
- typedef TensorBase<TensorChippingOp<DimId, XprType> > Base;
84
- typedef typename Eigen::internal::traits<TensorChippingOp>::Scalar Scalar;
85
- typedef typename Eigen::NumTraits<Scalar>::Real RealScalar;
86
- typedef typename XprType::CoeffReturnType CoeffReturnType;
87
- typedef typename Eigen::internal::nested<TensorChippingOp>::type Nested;
88
- typedef typename Eigen::internal::traits<TensorChippingOp>::StorageKind StorageKind;
89
- typedef typename Eigen::internal::traits<TensorChippingOp>::Index Index;
90
-
91
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorChippingOp(const XprType& expr, const Index offset, const Index dim)
92
- : m_xpr(expr), m_offset(offset), m_dim(dim) {
93
- }
94
-
95
- EIGEN_DEVICE_FUNC
96
- const Index offset() const { return m_offset; }
97
- EIGEN_DEVICE_FUNC
98
- const Index dim() const { return m_dim.actualDim(); }
99
-
100
- EIGEN_DEVICE_FUNC
101
- const typename internal::remove_all<typename XprType::Nested>::type&
102
- expression() const { return m_xpr; }
103
-
104
- EIGEN_TENSOR_INHERIT_ASSIGNMENT_OPERATORS(TensorChippingOp)
105
-
106
- protected:
107
- typename XprType::Nested m_xpr;
108
- const Index m_offset;
109
- const internal::DimensionId<DimId> m_dim;
110
- };
111
-
112
-
113
- // Eval as rvalue
114
- template<DenseIndex DimId, typename ArgType, typename Device>
115
- struct TensorEvaluator<const TensorChippingOp<DimId, ArgType>, Device>
116
- {
117
- typedef TensorChippingOp<DimId, ArgType> XprType;
118
- static const int NumInputDims = internal::array_size<typename TensorEvaluator<ArgType, Device>::Dimensions>::value;
119
- static const int NumDims = NumInputDims-1;
120
- typedef typename XprType::Index Index;
121
- typedef DSizes<Index, NumDims> Dimensions;
122
- typedef typename XprType::Scalar Scalar;
123
- typedef typename XprType::CoeffReturnType CoeffReturnType;
124
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
125
- static const int PacketSize = PacketType<CoeffReturnType, Device>::size;
126
- typedef StorageMemory<CoeffReturnType, Device> Storage;
127
- typedef typename Storage::Type EvaluatorPointerType;
128
-
129
- enum {
130
- // Alignment can't be guaranteed at compile time since it depends on the
131
- // slice offsets.
132
- IsAligned = false,
133
- Layout = TensorEvaluator<ArgType, Device>::Layout,
134
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
135
- BlockAccess = TensorEvaluator<ArgType, Device>::BlockAccess,
136
- // Chipping of outer-most dimension is a trivial operation, because we can
137
- // read and write directly from the underlying tensor using single offset.
138
- IsOuterChipping = (static_cast<int>(Layout) == ColMajor && DimId == NumInputDims - 1) ||
139
- (static_cast<int>(Layout) == RowMajor && DimId == 0),
140
- // Chipping inner-most dimension.
141
- IsInnerChipping = (static_cast<int>(Layout) == ColMajor && DimId == 0) ||
142
- (static_cast<int>(Layout) == RowMajor && DimId == NumInputDims - 1),
143
- // Prefer block access if the underlying expression prefers it, otherwise
144
- // only if chipping is not trivial.
145
- PreferBlockAccess = TensorEvaluator<ArgType, Device>::PreferBlockAccess ||
146
- !IsOuterChipping,
147
- CoordAccess = false, // to be implemented
148
- RawAccess = false
149
- };
150
-
151
- typedef typename internal::remove_const<Scalar>::type ScalarNoConst;
152
-
153
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
154
- typedef internal::TensorBlockDescriptor<NumDims, Index> TensorBlockDesc;
155
- typedef internal::TensorBlockScratchAllocator<Device> TensorBlockScratch;
156
-
157
- typedef internal::TensorBlockDescriptor<NumInputDims, Index>
158
- ArgTensorBlockDesc;
159
- typedef typename TensorEvaluator<const ArgType, Device>::TensorBlock
160
- ArgTensorBlock;
161
-
162
- typedef typename internal::TensorMaterializedBlock<ScalarNoConst, NumDims,
163
- Layout, Index>
164
- TensorBlock;
165
- //===--------------------------------------------------------------------===//
166
-
167
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
168
- : m_impl(op.expression(), device), m_dim(op.dim()), m_device(device)
169
- {
170
- EIGEN_STATIC_ASSERT((NumInputDims >= 1), YOU_MADE_A_PROGRAMMING_MISTAKE);
171
- eigen_assert(NumInputDims > m_dim.actualDim());
172
-
173
- const typename TensorEvaluator<ArgType, Device>::Dimensions& input_dims = m_impl.dimensions();
174
- eigen_assert(op.offset() < input_dims[m_dim.actualDim()]);
175
-
176
- int j = 0;
177
- for (int i = 0; i < NumInputDims; ++i) {
178
- if (i != m_dim.actualDim()) {
179
- m_dimensions[j] = input_dims[i];
180
- ++j;
181
- }
182
- }
183
-
184
- m_stride = 1;
185
- m_inputStride = 1;
186
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
187
- for (int i = 0; i < m_dim.actualDim(); ++i) {
188
- m_stride *= input_dims[i];
189
- m_inputStride *= input_dims[i];
190
- }
191
- } else {
192
- for (int i = NumInputDims-1; i > m_dim.actualDim(); --i) {
193
- m_stride *= input_dims[i];
194
- m_inputStride *= input_dims[i];
195
- }
196
- }
197
- m_inputStride *= input_dims[m_dim.actualDim()];
198
- m_inputOffset = m_stride * op.offset();
199
- }
200
-
201
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const { return m_dimensions; }
202
-
203
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType) {
204
- m_impl.evalSubExprsIfNeeded(NULL);
205
- return true;
206
- }
207
-
208
- EIGEN_STRONG_INLINE void cleanup() {
209
- m_impl.cleanup();
210
- }
211
-
212
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const
213
- {
214
- return m_impl.coeff(srcCoeff(index));
215
- }
216
-
217
- template<int LoadMode>
218
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packet(Index index) const
219
- {
220
- EIGEN_STATIC_ASSERT((PacketSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
221
- eigen_assert(index+PacketSize-1 < dimensions().TotalSize());
222
-
223
- if (isInnerChipping()) {
224
- // m_stride is equal to 1, so let's avoid the integer division.
225
- eigen_assert(m_stride == 1);
226
- Index inputIndex = index * m_inputStride + m_inputOffset;
227
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[PacketSize];
228
- EIGEN_UNROLL_LOOP
229
- for (int i = 0; i < PacketSize; ++i) {
230
- values[i] = m_impl.coeff(inputIndex);
231
- inputIndex += m_inputStride;
232
- }
233
- PacketReturnType rslt = internal::pload<PacketReturnType>(values);
234
- return rslt;
235
- } else if (isOuterChipping()) {
236
- // m_stride is always greater than index, so let's avoid the integer division.
237
- eigen_assert(m_stride > index);
238
- return m_impl.template packet<LoadMode>(index + m_inputOffset);
239
- } else {
240
- const Index idx = index / m_stride;
241
- const Index rem = index - idx * m_stride;
242
- if (rem + PacketSize <= m_stride) {
243
- Index inputIndex = idx * m_inputStride + m_inputOffset + rem;
244
- return m_impl.template packet<LoadMode>(inputIndex);
245
- } else {
246
- // Cross the stride boundary. Fallback to slow path.
247
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[PacketSize];
248
- EIGEN_UNROLL_LOOP
249
- for (int i = 0; i < PacketSize; ++i) {
250
- values[i] = coeff(index);
251
- ++index;
252
- }
253
- PacketReturnType rslt = internal::pload<PacketReturnType>(values);
254
- return rslt;
255
- }
256
- }
257
- }
258
-
259
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost
260
- costPerCoeff(bool vectorized) const {
261
- double cost = 0;
262
- if ((static_cast<int>(Layout) == static_cast<int>(ColMajor) &&
263
- m_dim.actualDim() == 0) ||
264
- (static_cast<int>(Layout) == static_cast<int>(RowMajor) &&
265
- m_dim.actualDim() == NumInputDims - 1)) {
266
- cost += TensorOpCost::MulCost<Index>() + TensorOpCost::AddCost<Index>();
267
- } else if ((static_cast<int>(Layout) == static_cast<int>(ColMajor) &&
268
- m_dim.actualDim() == NumInputDims - 1) ||
269
- (static_cast<int>(Layout) == static_cast<int>(RowMajor) &&
270
- m_dim.actualDim() == 0)) {
271
- cost += TensorOpCost::AddCost<Index>();
272
- } else {
273
- cost += 3 * TensorOpCost::MulCost<Index>() + TensorOpCost::DivCost<Index>() +
274
- 3 * TensorOpCost::AddCost<Index>();
275
- }
276
-
277
- return m_impl.costPerCoeff(vectorized) +
278
- TensorOpCost(0, 0, cost, vectorized, PacketSize);
279
- }
280
-
281
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
282
- internal::TensorBlockResourceRequirements getResourceRequirements() const {
283
- const size_t target_size = m_device.lastLevelCacheSize();
284
- return internal::TensorBlockResourceRequirements::merge(
285
- internal::TensorBlockResourceRequirements::skewed<Scalar>(target_size),
286
- m_impl.getResourceRequirements());
287
- }
288
-
289
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorBlock
290
- block(TensorBlockDesc& desc, TensorBlockScratch& scratch,
291
- bool root_of_expr_ast = false) const {
292
- const Index chip_dim = m_dim.actualDim();
293
-
294
- DSizes<Index, NumInputDims> input_block_dims;
295
- for (int i = 0; i < NumInputDims; ++i) {
296
- input_block_dims[i]
297
- = i < chip_dim ? desc.dimension(i)
298
- : i > chip_dim ? desc.dimension(i - 1)
299
- : 1;
300
- }
301
-
302
- ArgTensorBlockDesc arg_desc(srcCoeff(desc.offset()), input_block_dims);
303
-
304
- // Try to reuse destination buffer for materializing argument block.
305
- if (desc.HasDestinationBuffer()) {
306
- DSizes<Index, NumInputDims> arg_destination_strides;
307
- for (int i = 0; i < NumInputDims; ++i) {
308
- arg_destination_strides[i]
309
- = i < chip_dim ? desc.destination().strides()[i]
310
- : i > chip_dim ? desc.destination().strides()[i - 1]
311
- : 0; // for dimensions of size `1` stride should never be used.
312
- }
313
-
314
- arg_desc.template AddDestinationBuffer<Layout>(
315
- desc.destination().template data<ScalarNoConst>(),
316
- arg_destination_strides);
317
- }
318
-
319
- ArgTensorBlock arg_block = m_impl.block(arg_desc, scratch, root_of_expr_ast);
320
- if (!arg_desc.HasDestinationBuffer()) desc.DropDestinationBuffer();
321
-
322
- if (arg_block.data() != NULL) {
323
- // Forward argument block buffer if possible.
324
- return TensorBlock(arg_block.kind(), arg_block.data(),
325
- desc.dimensions());
326
-
327
- } else {
328
- // Assign argument block expression to a buffer.
329
-
330
- // Prepare storage for the materialized chipping result.
331
- const typename TensorBlock::Storage block_storage =
332
- TensorBlock::prepareStorage(desc, scratch);
333
-
334
- typedef internal::TensorBlockAssignment<
335
- ScalarNoConst, NumInputDims, typename ArgTensorBlock::XprType, Index>
336
- TensorBlockAssignment;
337
-
338
- TensorBlockAssignment::Run(
339
- TensorBlockAssignment::target(
340
- arg_desc.dimensions(),
341
- internal::strides<Layout>(arg_desc.dimensions()),
342
- block_storage.data()),
343
- arg_block.expr());
344
-
345
- return block_storage.AsTensorMaterializedBlock();
346
- }
347
- }
348
-
349
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE typename Storage::Type data() const {
350
- typename Storage::Type result = constCast(m_impl.data());
351
- if (isOuterChipping() && result) {
352
- return result + m_inputOffset;
353
- } else {
354
- return NULL;
355
- }
356
- }
357
- #ifdef EIGEN_USE_SYCL
358
- // binding placeholder accessors to a command group handler for SYCL
359
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
360
- m_impl.bind(cgh);
361
- }
362
- #endif
363
-
364
- protected:
365
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index srcCoeff(Index index) const
366
- {
367
- Index inputIndex;
368
- if (isInnerChipping()) {
369
- // m_stride is equal to 1, so let's avoid the integer division.
370
- eigen_assert(m_stride == 1);
371
- inputIndex = index * m_inputStride + m_inputOffset;
372
- } else if (isOuterChipping()) {
373
- // m_stride is always greater than index, so let's avoid the integer
374
- // division.
375
- eigen_assert(m_stride > index);
376
- inputIndex = index + m_inputOffset;
377
- } else {
378
- const Index idx = index / m_stride;
379
- inputIndex = idx * m_inputStride + m_inputOffset;
380
- index -= idx * m_stride;
381
- inputIndex += index;
382
- }
383
- return inputIndex;
384
- }
385
-
386
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE bool isInnerChipping() const {
387
- return IsInnerChipping ||
388
- (static_cast<int>(Layout) == ColMajor && m_dim.actualDim() == 0) ||
389
- (static_cast<int>(Layout) == RowMajor && m_dim.actualDim() == NumInputDims - 1);
390
- }
391
-
392
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE bool isOuterChipping() const {
393
- return IsOuterChipping ||
394
- (static_cast<int>(Layout) == ColMajor && m_dim.actualDim() == NumInputDims-1) ||
395
- (static_cast<int>(Layout) == RowMajor && m_dim.actualDim() == 0);
396
- }
397
-
398
- Dimensions m_dimensions;
399
- Index m_stride;
400
- Index m_inputOffset;
401
- Index m_inputStride;
402
- TensorEvaluator<ArgType, Device> m_impl;
403
- const internal::DimensionId<DimId> m_dim;
404
- const Device EIGEN_DEVICE_REF m_device;
405
- };
406
-
407
-
408
- // Eval as lvalue
409
- template<DenseIndex DimId, typename ArgType, typename Device>
410
- struct TensorEvaluator<TensorChippingOp<DimId, ArgType>, Device>
411
- : public TensorEvaluator<const TensorChippingOp<DimId, ArgType>, Device>
412
- {
413
- typedef TensorEvaluator<const TensorChippingOp<DimId, ArgType>, Device> Base;
414
- typedef TensorChippingOp<DimId, ArgType> XprType;
415
- static const int NumInputDims = internal::array_size<typename TensorEvaluator<ArgType, Device>::Dimensions>::value;
416
- static const int NumDims = NumInputDims-1;
417
- typedef typename XprType::Index Index;
418
- typedef DSizes<Index, NumDims> Dimensions;
419
- typedef typename XprType::Scalar Scalar;
420
- typedef typename XprType::CoeffReturnType CoeffReturnType;
421
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
422
- static const int PacketSize = PacketType<CoeffReturnType, Device>::size;
423
-
424
- enum {
425
- IsAligned = false,
426
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
427
- BlockAccess = TensorEvaluator<ArgType, Device>::RawAccess,
428
- Layout = TensorEvaluator<ArgType, Device>::Layout,
429
- RawAccess = false
430
- };
431
-
432
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
433
- typedef internal::TensorBlockDescriptor<NumDims, Index> TensorBlockDesc;
434
- //===--------------------------------------------------------------------===//
435
-
436
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
437
- : Base(op, device)
438
- { }
439
-
440
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType& coeffRef(Index index)
441
- {
442
- return this->m_impl.coeffRef(this->srcCoeff(index));
443
- }
444
-
445
- template <int StoreMode> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
446
- void writePacket(Index index, const PacketReturnType& x)
447
- {
448
- EIGEN_STATIC_ASSERT((PacketSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
449
-
450
- if (this->isInnerChipping()) {
451
- // m_stride is equal to 1, so let's avoid the integer division.
452
- eigen_assert(this->m_stride == 1);
453
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[PacketSize];
454
- internal::pstore<CoeffReturnType, PacketReturnType>(values, x);
455
- Index inputIndex = index * this->m_inputStride + this->m_inputOffset;
456
- EIGEN_UNROLL_LOOP
457
- for (int i = 0; i < PacketSize; ++i) {
458
- this->m_impl.coeffRef(inputIndex) = values[i];
459
- inputIndex += this->m_inputStride;
460
- }
461
- } else if (this->isOuterChipping()) {
462
- // m_stride is always greater than index, so let's avoid the integer division.
463
- eigen_assert(this->m_stride > index);
464
- this->m_impl.template writePacket<StoreMode>(index + this->m_inputOffset, x);
465
- } else {
466
- const Index idx = index / this->m_stride;
467
- const Index rem = index - idx * this->m_stride;
468
- if (rem + PacketSize <= this->m_stride) {
469
- const Index inputIndex = idx * this->m_inputStride + this->m_inputOffset + rem;
470
- this->m_impl.template writePacket<StoreMode>(inputIndex, x);
471
- } else {
472
- // Cross stride boundary. Fallback to slow path.
473
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[PacketSize];
474
- internal::pstore<CoeffReturnType, PacketReturnType>(values, x);
475
- EIGEN_UNROLL_LOOP
476
- for (int i = 0; i < PacketSize; ++i) {
477
- this->coeffRef(index) = values[i];
478
- ++index;
479
- }
480
- }
481
- }
482
- }
483
-
484
- template <typename TensorBlock>
485
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void writeBlock(
486
- const TensorBlockDesc& desc, const TensorBlock& block) {
487
- assert(this->m_impl.data() != NULL);
488
-
489
- const Index chip_dim = this->m_dim.actualDim();
490
-
491
- DSizes<Index, NumInputDims> input_block_dims;
492
- for (int i = 0; i < NumInputDims; ++i) {
493
- input_block_dims[i] = i < chip_dim ? desc.dimension(i)
494
- : i > chip_dim ? desc.dimension(i - 1)
495
- : 1;
496
- }
497
-
498
- typedef TensorReshapingOp<const DSizes<Index, NumInputDims>,
499
- const typename TensorBlock::XprType>
500
- TensorBlockExpr;
501
-
502
- typedef internal::TensorBlockAssignment<Scalar, NumInputDims,
503
- TensorBlockExpr, Index>
504
- TensorBlockAssign;
505
-
506
- TensorBlockAssign::Run(
507
- TensorBlockAssign::target(
508
- input_block_dims,
509
- internal::strides<Layout>(this->m_impl.dimensions()),
510
- this->m_impl.data(), this->srcCoeff(desc.offset())),
511
- block.expr().reshape(input_block_dims));
512
- }
513
- };
514
-
515
-
516
- } // end namespace Eigen
517
-
518
- #endif // EIGEN_CXX11_TENSOR_TENSOR_CHIPPING_H